Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

How to get fastq header information of spliced and unspliced 10X short reads #396

Open
wenhu0701 opened this issue Jun 25, 2024 · 0 comments

Comments

@wenhu0701
Copy link

Hi Gioele,

Thanks for making this wonderful package!
I used velocyto to get the spliced and unspliced UMI count matrix of 10X samples.
Now I'm trying to retrieve the spliced and unspliced short reads alignment results out of the gex_possorted_bam.bam. I wonder if there's a way to get the fastq header of spliced/unspliced reads from velocyto output?

Thanks!
Wen

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant