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velocyto on filtered or raw matrix or from matrix corrected ? #389

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Sirin24 opened this issue Apr 8, 2024 · 0 comments
Open

velocyto on filtered or raw matrix or from matrix corrected ? #389

Sirin24 opened this issue Apr 8, 2024 · 0 comments

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@Sirin24
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Sirin24 commented Apr 8, 2024

Hello,
I have a question regarding how to run velocyto. if i plan to take raw counts from veloctyo and use some matrix correction tools such as soupX, do I run velocyto on this resulting matrix and bam file? or can I use the loom file generated from filtered cellranger matrix.
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@Sirin24