You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Error:: below error is occured when running velocyto with cellranger-5.0.1-dirty. with cellranger 7.0.0 version is OK.
OSError: truncated file
[E::bgzf_uncompress] CRC32 checksum mismatch
[E::bgzf_read_block] BGZF decode jobs returned error 1 for block offset 17210303020
[E::bgzf_read] Read block operation failed with error 1 after 0 of 4 bytes
samtools sort: truncated file. Aborting
I don't know why this Error occured..
please give me any advice for this.
version ::
samtools 1.19.2
Using htslib 1.19.1
velocyto : 0.17.17
I used like this.
velocyto run -b /mypath/outs/filtered_feature_bc_matrix/barcodes.tsv.gz -o /mypath/result/ /mypath/outs/possorted_genome_bam.bam /mypath/refdata-gex-GRCh38-2020-A/genes/genes.gtf
The text was updated successfully, but these errors were encountered:
Error:: below error is occured when running velocyto with cellranger-5.0.1-dirty. with cellranger 7.0.0 version is OK.
OSError: truncated file
[E::bgzf_uncompress] CRC32 checksum mismatch
[E::bgzf_read_block] BGZF decode jobs returned error 1 for block offset 17210303020
[E::bgzf_read] Read block operation failed with error 1 after 0 of 4 bytes
samtools sort: truncated file. Aborting
I don't know why this Error occured..
please give me any advice for this.
version ::
samtools 1.19.2
Using htslib 1.19.1
velocyto : 0.17.17
I used like this.
velocyto run -b /mypath/outs/filtered_feature_bc_matrix/barcodes.tsv.gz -o /mypath/result/ /mypath/outs/possorted_genome_bam.bam /mypath/refdata-gex-GRCh38-2020-A/genes/genes.gtf
The text was updated successfully, but these errors were encountered: