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index-imaging.html
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<!DOCTYPE html>
<html lang="en">
<head>
<title>Galaxy Europe</title>
<meta property="og:title" content="" />
<meta property="og:description" content="" />
<meta property="og:image" content="/assets/media/galaxy-eu-logo.512.png" />
<meta name="description" content="The European Galaxy Instance">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<link rel="stylesheet" href="/assets/css/bootstrap.min.css">
<link rel="stylesheet" href="/assets/css/main.css">
<link rel="canonical" href="https://galaxyproject.eu/index-imaging.html">
<link rel="shortcut icon" href="/assets/media/galaxy-eu-logo.64.png" type="image/x-icon" />
<link rel="alternate" type="application/rss+xml" title="Galaxy Europe" href="/feed.xml">
<link href="/assets/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-wvfXpqpZZVQGK6TAh5PVlGOfQNHSoD2xbE+QkPxCAFlNEevoEH3Sl0sibVcOQVnN" crossorigin="anonymous">
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</head>
<body>
<div id="wrap">
<div id="main">
<div class="container" id="maincontainer">
<div class="home">
<h1 class="no_toc" id="welcome-to-the-imaging-flavour-of-galaxy">Welcome to the Imaging flavour of Galaxy</h1>
<p>The imaging flavor of Galaxy offers a filtered set of tools that you can assemble into workflows to manage image data, and perform image analysis and processing.</p>
<ol id="markdown-toc">
<li><a href="#get-started" id="markdown-toc-get-started">Get started</a></li>
<li><a href="#training" id="markdown-toc-training">Training</a></li>
<li><a href="#partners" id="markdown-toc-partners">Partners</a></li>
</ol>
<h1 id="get-started">Get started</h1>
<p>Are you new to Galaxy, or returning after a long time, and looking for help to get started? Take <a href="https://imaging.usegalaxy.eu/tours/core.galaxy_ui" target="_blank">a guided tour</a> through Galaxy’s user interface.</p>
<p><br /></p>
<h1 id="training">Training</h1>
<p><a href="https://training.galaxyproject.org/training-material/topics/imaging/" target="_blank">Several image analysis tutorials</a> avalable in the <a href="https://training.galaxyproject.org" target="_blank"><strong>Galaxy Training Network (GTN)</strong></a>:</p>
<iframe src="https://training.galaxyproject.org/training-material/tags/imaging/embed.html" height="600px" width="100%" class="gtn-embed" frameborder="0"></iframe>
<p>To know more about the GTN, check the video below!</p>
<p><br /></p>
<iframe width="560" height="315" src="https://www.youtube.com/embed/lDqWxzWNk1k" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen="">
</iframe>
<p><br /></p>
<h1 id="partners">Partners</h1>
<p>The imaging flavour of Galaxy is a joint effort between different partners including EOSC-Life and its associated Research Infrastructures (<a href="https://www.eurobioimaging.eu/" target="_blank">Euro-Bioimaging</a>, <a href="https://elixir-europe.org/" target="_blank">ELIXIR</a>), <a href="http://www.bioquant.uni-heidelberg.de/research/groups/biomedical_computer_vision.html" target="_blank">BMCV (Heidelberg University)</a> and the <a href="https://galaxyproject.eu/freiburg/" target="_blank">University of Freiburg</a>.</p>
<p>The service is part of the European Galaxy server and is maintained by the <a href="https://www.denbi.de/network/rna-bioinformatics-center-rbc" target="_blank">RNA Bioinformatics Center (RBC)</a> as part of <a href="https://www.denbi.de" target="_blank">de.NBI</a> and <a href="http://elixir-europe.org" target="_blank">ELIXIR</a>.</p>
<table border="0"><tr>
<td width="9%">
<img alt="EOSC-Life" src="/assets/media/EOSC_logo.png" />
</td>
<td width="10%">
<img alt="Galaxy Freiburg" src="/assets/media/freiburg-galaxy.svg" />
</td>
<td width="12%">
<img alt="BMCV" src="/assets/media/logo_BMCV.png" />
</td>
<td width="14%">
<img alt="BMCV" src="/assets/media/Logo_UHD.png" />
</td>
<td width="28%">
<img alt="Euro-Bioimaging" src="/assets/media/eubi_logo.png" />
</td>
<td width="8%">
<img alt="ELIXIR" src="/assets/media/elixir_logo.png" />
</td>
<td width="11%">
<img alt="EMBL" src="/assets/media/logo_EMBL.png" />
</td>
<td width="8%">
<img alt="IDR" src="/assets/media/idr_logo.png" />
</td>
</tr></table>
<h2>Our Data Policy</h2>
<table class="table table-striped">
<thead>
<tr>
<th>Registered Users</th><th>Unregistered Users</th><th>FTP Data</th><th>GDPR Compliance</th>
</tr>
</thead>
<tbody>
<tr>
<td>User data on UseGalaxy.eu (i.e. datasets, histories) will be available as long
as they are not deleted by the user. Once marked as deleted the datasets will
be permanently removed within 14 days. If the user "purges" the dataset in the
Galaxy, it will be removed immediately, permanently.
An <a href="https://docs.google.com/forms/d/e/1FAIpQLSf9w2MOS6KOlu9XdhRSDqWnCDkzoVBqHJ3zH_My4p8D8ZgkIQ/viewform" target="_blank">extended quota can be requested</a>
for a limited time period in special cases.
</td>
<td>Processed data will only be accessible during one browser session, using a
cookie to identify your data. This cookie is not used for any other purposes
(e.g. tracking or analytics).
If UseGalaxy.eu service is not accessed for 90 days, those datasets will be
permanently deleted.
</td>
<td>Any user data uploaded to our <a href="https://galaxyproject.eu/ftp/">FTP server</a> should be imported into Galaxy as soon
as possible. Data left in FTP folders for more than 3 months, will be deleted.
</td>
<td>The Galaxy service complies with the EU General Data Protection Regulation
(GDPR). You can read more about this on our
<a href="https://usegalaxy.eu/terms/">Terms and Conditions</a>.</td>
</tr>
</tbody>
</table>
<!-- <h4>Registered Users</h4>
User data on UseGalaxy.eu (i.e. datasets, histories) will be available as long
as they are not deleted by the user. Once marked as deleted the datasets will
be permanently removed within 14 days. If the user "purges" the dataset in the
Galaxy, it will be removed immediately, permanently.
An <a href="https://docs.google.com/forms/d/e/1FAIpQLSf9w2MOS6KOlu9XdhRSDqWnCDkzoVBqHJ3zH_My4p8D8ZgkIQ/viewform" target="_blank">extended quota can be requested</a>
for a limited time period in special cases.
<h4>Unregistered Users</h4>
Processed data will only be accessible during one browser session, using a
cookie to identify your data. This cookie is not used for any other purposes
(e.g. tracking or analytics).
If UseGalaxy.eu service is not accessed for 90 days, those datasets will be
permanently deleted.
<h4>FTP Data</h4>
Any user data uploaded to our <a href="https://galaxyproject.eu/ftp/">FTP server</a> should be imported into Galaxy as soon
as possible. Data left in FTP folders for more than 3 months, will be deleted.
<h4>GDPR Compliance</h4>
The Galaxy service complies with the EU General Data Protection Regulation
(GDPR). You can read more about this on our
<a href="https://usegalaxy.eu/terms/">Terms and Conditions</a>.
-->
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<p>UseGalaxy.eu is maintained largely by the <a href="/freiburg/">Freiburg Galaxy Team</a> but also collectively by groups and individuals from across Europe. All of the member sites in this repository contribute to the European Galaxy Project.
For <strong>acknowledgement</strong>, please refer to the <a href="/about">About</a> section.
All content on this site is available under <a href="https://creativecommons.org/share-your-work/public-domain/cc0/">CC0-1.0</a> unless otherwise specified.</p>
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