tools_iuc.yaml.lock

install_repository_dependencies: true
install_resolver_dependencies: true
install_tool_dependencies: false
tools:
- name: anndata_import
  owner: iuc
  revisions:
  - 00712416fdaa
  - 080eab96d846
  - 6f143dfe902a
  - 93dd15e13e6a
  - d330b3082107
  - fb9e030ffae4
  tool_panel_section_label: Single-cell
- name: anndata_export
  owner: iuc
  revisions:
  - 016308443041
  - 0cb889db0910
  - 7a6655aa6eb2
  - cfaf5a405371
  - e1c3c2f2a834
  tool_panel_section_label: Single-cell
- name: anndata_manipulate
  owner: iuc
  revisions:
  - 0ef28c0963c8
  - 3d748954434b
  - 7e8c677a7b71
  - c4209ea387d4
  - ed4996a16f7f
  tool_panel_section_label: Single-cell
- name: anndata_inspect
  owner: iuc
  revisions:
  - 038e32885fec
  - 05304c5c195d
  - 0bf7fddf90c7
  - 14c576ea6148
  - 6f0d0c784f09
  - ee98d611afc6
  tool_panel_section_label: Single-cell
- name: bedtools
  owner: iuc
  revisions:
  - 07e8b80f278c
  - 0a5c785ac6db
  - 4f7a5ccd2ae9
  - 64e2edfe7a2c
  tool_panel_section_label: Operate on Genomic Intervals
- name: collection_element_identifiers
  owner: iuc
  revisions:
  - 220ee3518f19
  - d3c07d270a50
  tool_panel_section_label: Collection Operations
- name: crosscontamination_barcode_filter
  owner: iuc
  revisions:
  - 253c9448f524
  - 5ade5cf200da
  tool_panel_section_label: RNA Analysis
- name: deg_annotate
  owner: iuc
  revisions:
  - b42373cddb77
  - e98d4ab5b5bc
  tool_panel_section_label: RNA Analysis
- name: dropletutils
  owner: iuc
  revisions:
  - 1797cbe967d1
  - a9caad671439
  tool_panel_section_label: Single-cell
- name: raceid_inspectclusters
  owner: iuc
  revisions:
  - 0fa80752a314
  - c7ddb719554d
  - f3eb2291da05
  tool_panel_section_label: Single-cell
- name: raceid_filtnormconf
  owner: iuc
  revisions:
  - 56a093c2a3f9
  - 8b917923f7d4
  - b83fbc90161e
  tool_panel_section_label: Single-cell
- name: raceid_clustering
  owner: iuc
  revisions:
  - 0bff0ee0683a
  - 49776718ae90
  - 4ea021bd7513
  tool_panel_section_label: Single-cell
- name: raceid_trajectory
  owner: iuc
  revisions:
  - 2af7c5086a96
  - 2bfd55b87af3
  - 3e5bb16abb55
  tool_panel_section_label: Single-cell
- name: raceid_inspecttrajectory
  owner: iuc
  revisions:
  - 4164c0da0a5d
  - 6e90c8adf84f
  - a6821f856a1e
  tool_panel_section_label: Single-cell
- name: kallisto_quant
  owner: iuc
  revisions:
  - 10c98fab6c5a
  - 4f9c4e6566e5
  - c971db6f0fe5
  tool_panel_section_label: RNA Analysis
- name: slamdunk
  owner: iuc
  revisions:
  - 24657d5edede
  - 5a26589d95ad
  tool_panel_section_label: RNA Analysis
- name: plasflow
  owner: iuc
  revisions:
  - 1d2a91ab28b7
  - bda6012394f7
  tool_panel_section_label: Metagenomic analyses
- name: pipelign
  owner: iuc
  revisions:
  - cd9d1eccda7e
  tool_panel_section_label: Multiple Alignments
- name: ruvseq
  owner: iuc
  revisions:
  - 3a083c78896e
  - 61dffb20b6f9
  - d1f7fa5bb3cb
  tool_panel_section_label: RNA Analysis
- name: kallisto_pseudo
  owner: iuc
  revisions:
  - 1c75aa5de15e
  - 87c11c05d238
  - ce5d418183c5
  tool_panel_section_label: RNA Analysis
- name: scpipe
  owner: iuc
  revisions:
  - 3ffca09599ca
  - 4ec6717872b1
  - a3b3ec00bf8f
  tool_panel_section_label: RNA Analysis
- name: seurat
  owner: iuc
  revisions:
  - 06ed31cf52ed
  - 321bdd834266
  - 8c28affc7c48
  - fab6ff46e019
  tool_panel_section_label: RNA Analysis
- name: feelnc
  owner: iuc
  revisions:
  - 095162ba8e90
  - 17a77824c8e4
  - 55daa4712413
  - 67af24676bd6
  tool_panel_section_label: RNA Analysis
- name: volcanoplot
  owner: iuc
  revisions:
  - 2f557f6abbfb
  - 59ebf2c42c0e
  - 83c573f2e73c
  tool_panel_section_label: Graph/Display Data
- name: nanoplot
  owner: iuc
  revisions:
  - 4c172a4a4c9e
  - a02b8b3f5a0c
  - a38bdcec9e4c
  - a3c4fe6f49ab
  tool_panel_section_label: Nanopore
- name: intervene
  owner: iuc
  revisions:
  - 21beb30956c2
  - 33b8c5eedc04
  - f5fa293605ca
  tool_panel_section_label: Graph/Display Data
- name: charts
  owner: iuc
  revisions:
  - 344ac3ca7557
  - a87a3773d8ed
  tool_panel_section_label: Graph/Display Data
- name: ggplot2_pca
  owner: iuc
  revisions:
  - 1b9406a1a769
  - ae344ccf9d62
  - b1268b7544d3
  - fcb6a19960c6
  tool_panel_section_label: Graph/Display Data
- name: pygenometracks
  owner: iuc
  revisions:
  - 0ea86f6bf2a1
  - 2824d77cd8f8
  - 36b848d5f3ec
  - a1abfa420d9d
  tool_panel_section_label: Graph/Display Data
- name: ggplot2_heatmap
  owner: iuc
  revisions:
  - 10515715c940
  - 1a72f938213e
  - a4d83ba2a1bc
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  tool_panel_section_label: Graph/Display Data
- name: ggplot2_violin
  owner: iuc
  revisions:
  - 0e7290688b50
  - 17b666467c32
  - 3a270cee1239
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  tool_panel_section_label: Graph/Display Data
- name: ggplot2_heatmap2
  owner: iuc
  revisions:
  - 374e9062d874
  - 48b42ee61bc5
  - 4955e9bb96d1
  - '566197475670'
  tool_panel_section_label: Graph/Display Data
- name: ggplot2_point
  owner: iuc
  revisions:
  - 1acf88921176
  - 1bff6682e780
  - 3b12bf9b4b87
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  tool_panel_section_label: Graph/Display Data
- name: ggplot2_histogram
  owner: iuc
  revisions:
  - 1f0242e49a58
  - 355a82227003
  - 6fc8bab811da
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  tool_panel_section_label: Graph/Display Data
- name: tsne
  owner: iuc
  revisions:
  - 53cfe6f313b3
  tool_panel_section_label: Graph/Display Data
- name: idr
  owner: iuc
  revisions:
  - d3ebbf39b1c5
  - de7795890bc5
  tool_panel_section_label: RNA Analysis
- name: circos
  owner: iuc
  revisions:
  - 014a21767ac4
  - 290a11559985
  - c4bde687c846
  tool_panel_section_label: Graph/Display Data
- name: ebi_search_rest_results
  owner: iuc
  revisions:
  - 42d5e40fcd0b
  tool_panel_section_label: Get Data
- name: ebi_metagenomics_run_downloader
  owner: iuc
  revisions:
  - a1ef6c88ee37
  tool_panel_section_label: Get Data
- name: table_compute
  owner: iuc
  revisions:
  - 02c3e335a695
  - 3bf5661c0280
  - 93a3ce78ce55
  tool_panel_section_label: Text Manipulation
- name: column_maker
  owner: devteam
  revisions:
  - 13b6f0007d9e
  - 464b9305180e
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  tool_panel_section_label: Text Manipulation
- name: reshape2_melt
  owner: iuc
  revisions:
  - 317ed0ee8bf2
  tool_panel_section_label: Text Manipulation
- name: reshape2_cast
  owner: iuc
  revisions:
  - d3b66a3a08ca
  tool_panel_section_label: Text Manipulation
- name: sra_tools
  owner: iuc
  revisions:
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  tool_panel_section_label: Get Data
- name: codeml
  owner: iuc
  revisions:
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  - dba114391c98
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  tool_panel_section_label: Evolution
- name: prinseq
  owner: iuc
  revisions:
  - 02befcb391f5
  - 1ee282794de3
  tool_panel_section_label: Text Manipulation
- name: add_value
  owner: devteam
  revisions:
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  tool_panel_section_label: Text Manipulation
- name: dwt_var_perfeature
  owner: devteam
  revisions:
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  tool_panel_section_label: Statistics
- name: merge_cols
  owner: devteam
  revisions:
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  tool_panel_section_label: Text Manipulation
- name: jq
  owner: iuc
  revisions:
  - 5ff75eb1a893
  tool_panel_section_label: Text Manipulation
- name: coverage
  owner: devteam
  revisions:
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  tool_panel_section_label: Text Manipulation
- name: tables_arithmetic_operations
  owner: devteam
  revisions:
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  tool_panel_section_label: Text Manipulation
- name: merge
  owner: devteam
  revisions:
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  tool_panel_section_label: Text Manipulation
- name: intersect
  owner: devteam
  revisions:
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  tool_panel_section_label: Text Manipulation
- name: flanking_features
  owner: devteam
  revisions:
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  tool_panel_section_label: Text Manipulation
- name: join
  owner: devteam
  revisions:
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  tool_panel_section_label: Text Manipulation
- name: cluster
  owner: devteam
  revisions:
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  tool_panel_section_label: Operate on Genomic Intervals
- name: get_flanks
  owner: devteam
  revisions:
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  tool_panel_section_label: Text Manipulation
- name: complement
  owner: devteam
  revisions:
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  tool_panel_section_label: Operate on Genomic Intervals
- name: subtract
  owner: devteam
  revisions:
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  tool_panel_section_label: Join, Subtract and Group
- name: basecoverage
  owner: devteam
  revisions:
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  tool_panel_section_label: Operate on Genomic Intervals
- name: subtract_query
  owner: devteam
  revisions:
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  tool_panel_section_label: Text Manipulation
- name: dna_filtering
  owner: devteam
  revisions:
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  tool_panel_section_label: Text Manipulation
- name: collection_column_join
  owner: iuc
  revisions:
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  tool_panel_section_label: Join, Subtract and Group
- name: bam_to_scidx
  owner: iuc
  revisions:
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  tool_panel_section_label: Convert Formats
- name: resize_coordinate_window
  owner: iuc
  revisions:
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  tool_panel_section_label: Convert Formats
- name: gffread
  owner: devteam
  revisions:
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  tool_panel_section_label: Convert Formats
- name: ucsc_twobittofa
  owner: iuc
  revisions:
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  tool_panel_section_label: Convert Formats
- name: tabular_to_fasta
  owner: devteam
  revisions:
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  tool_panel_section_label: FASTA/FASTQ manipulation
- name: filtlong
  owner: iuc
  revisions:
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  tool_panel_section_label: FASTA/FASTQ manipulation
- name: fasta_to_tabular
  owner: devteam
  revisions:
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  tool_panel_section_label: FASTA/FASTQ manipulation
- name: fastqtofasta
  owner: devteam
  revisions:
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  tool_panel_section_label: FASTA/FASTQ manipulation
- name: fastq_to_fasta
  owner: devteam
  revisions:
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  tool_panel_section_label: FASTA/FASTQ manipulation
- name: fastp
  owner: iuc
  revisions:
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  tool_panel_section_label: FASTA/FASTQ manipulation
- name: fasta_stats
  owner: iuc
  revisions:
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  tool_panel_section_label: FASTA/FASTQ manipulation
- name: length_and_gc_content
  owner: iuc
  revisions:
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  tool_panel_section_label: Extract Features
- name: extract_genomic_dna
  owner: iuc
  revisions:
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  tool_panel_section_label: Other Tools
- name: concat
  owner: devteam
  revisions:
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  tool_panel_section_label: Operate on Genomic Intervals
- name: annotation_profiler
  owner: devteam
  revisions:
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  tool_panel_section_label: Operate on Genomic Intervals
- name: t_test_two_samples
  owner: devteam
  revisions:
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  tool_panel_section_label: Statistics
- name: plot_from_lda
  owner: devteam
  revisions:
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  tool_panel_section_label: Statistics
- name: mine
  owner: devteam
  revisions:
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  tool_panel_section_label: Statistics
- name: lda_analysis
  owner: devteam
  revisions:
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  tool_panel_section_label: Statistics
- name: generate_pc_lda_matrix
  owner: devteam
  revisions:
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  tool_panel_section_label: Statistics
- name: count_gff_features
  owner: devteam
  revisions:
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  tool_panel_section_label: Statistics
- name: correlation
  owner: devteam
  revisions:
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  tool_panel_section_label: Statistics
- name: fasta_nucleotide_color_plot
  owner: iuc
  revisions:
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  tool_panel_section_label: Graph/Display Data
- name: jbrowse
  owner: iuc
  revisions:
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  tool_panel_section_label: Graph/Display Data
- name: ucsc_custom_track
  owner: devteam
  revisions:
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  tool_panel_section_label: Graph/Display Data
- name: scatterplot
  owner: devteam
  revisions:
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  tool_panel_section_label: Graph/Display Data
- name: histogram
  owner: devteam
  revisions:
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  tool_panel_section_label: Graph/Display Data
- name: gmaj
  owner: devteam
  revisions:
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  tool_panel_section_label: Graph/Display Data
- name: xy_plot
  owner: devteam
  revisions:
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  tool_panel_section_label: Graph/Display Data
- name: featurecounter
  owner: devteam
  revisions:
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  tool_panel_section_label: Regional Variation
- name: indels_3way
  owner: devteam
  revisions:
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  tool_panel_section_label: Regional Variation
- name: draw_stacked_barplots
  owner: devteam
  revisions:
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  tool_panel_section_label: Regional Variation
- name: delete_overlapping_indels
  owner: devteam
  revisions:
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  tool_panel_section_label: Regional Variation
- name: compute_motifs_frequency
  owner: devteam
  revisions:
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  tool_panel_section_label: Regional Variation
- name: compute_motif_frequencies_for_all_motifs
  owner: devteam
  revisions:
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  tool_panel_section_label: Regional Variation
- name: categorize_elements_satisfying_criteria
  owner: devteam
  revisions:
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  tool_panel_section_label: Regional Variation
- name: best_regression_subsets
  owner: devteam
  revisions:
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  tool_panel_section_label: Statistics
- name: principal_component_analysis
  owner: devteam
  revisions:
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  tool_panel_section_label: Statistics
- name: kernel_principal_component_analysis
  owner: devteam
  revisions:
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  tool_panel_section_label: Statistics
- name: kernel_canonical_correlation_analysis
  owner: devteam
  revisions:
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  tool_panel_section_label: Statistics
- name: canonical_correlation_analysis
  owner: devteam
  revisions:
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  tool_panel_section_label: Statistics
- name: mutate_snp_codon
  owner: devteam
  revisions:
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  tool_panel_section_label: Evolution
- name: iqtree
  owner: iuc
  revisions:
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  tool_panel_section_label: Evolution
- name: structure
  owner: iuc
  revisions:
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  tool_panel_section_label: Evolution
- name: meme_meme
  owner: iuc
  revisions:
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  tool_panel_section_label: Motif Tools
- name: meme_fimo
  owner: iuc
  revisions:
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  tool_panel_section_label: Motif Tools
- name: meme_psp_gen
  owner: iuc
  revisions:
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  tool_panel_section_label: Motif Tools
- name: meme_chip
  owner: iuc
  revisions:
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  tool_panel_section_label: Motif Tools
- name: weblogo3
  owner: devteam
  revisions:
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  tool_panel_section_label: Motif Tools
- name: mummer_mummer
  owner: iuc
  revisions:
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  tool_panel_section_label: Multiple Alignments
- name: mummer_show_coords
  owner: iuc
  revisions:
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  tool_panel_section_label: Multiple Alignments
- name: mummer_dnadiff
  owner: iuc
  revisions:
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  tool_panel_section_label: Multiple Alignments
- name: mummer_nucmer
  owner: iuc
  revisions:
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  tool_panel_section_label: Multiple Alignments
- name: mummer_delta_filter
  owner: iuc
  revisions:
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  tool_panel_section_label: Multiple Alignments
- name: mummer_mummerplot
  owner: iuc
  revisions:
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  tool_panel_section_label: Multiple Alignments
- name: msaboot
  owner: iuc
  revisions:
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  tool_panel_section_label: Multiple Alignments
- name: clustalw
  owner: devteam
  revisions:
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  tool_panel_section_label: Multiple Alignments
- name: bio_hansel
  owner: iuc
  revisions:
  - 1b88c1cf803d
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  tool_panel_section_label: Metagenomic analyses
- name: crispr_studio
  owner: iuc
  revisions:
  - 7346619ad005
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  tool_panel_section_label: Genome editing
- name: vegan_diversity
  owner: iuc
  revisions:
  - a1b80a746054
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  tool_panel_section_label: Metagenomic analyses
- name: vegan_fisher_alpha
  owner: iuc
  revisions:
  - 0148e5cf20b2
  - a5a453f92273
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  tool_panel_section_label: Metagenomic analyses
- name: vegan_rarefaction
  owner: iuc
  revisions:
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  tool_panel_section_label: Metagenomic analyses
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  tool_panel_section_label: Metagenomic analyses
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  tool_panel_section_label: Metagenomic analyses
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  tool_panel_section_label: Metagenomic analyses
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  tool_panel_section_label: Metagenomic analyses
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  tool_panel_section_label: Metagenomic analyses
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  tool_panel_section_label: Metagenomic analyses
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  tool_panel_section_label: Metagenomic analyses
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  tool_panel_section_label: Metagenomic analyses
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  tool_panel_section_label: Metagenomic analyses
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  tool_panel_section_label: Metagenomic analyses
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  tool_panel_section_label: Metagenomic analyses
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  tool_panel_section_label: Metagenomic analyses
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  tool_panel_section_label: FASTA/FASTQ manipulation
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  tool_panel_section_label: FASTA/FASTQ manipulation
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  tool_panel_section_label: FASTA/FASTQ manipulation
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  tool_panel_section_label: FASTA/FASTQ manipulation
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  tool_panel_section_label: FASTA/FASTQ manipulation
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  tool_panel_section_label: FASTA/FASTQ manipulation
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  tool_panel_section_label: FASTA/FASTQ manipulation
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  tool_panel_section_label: FASTA/FASTQ manipulation
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  tool_panel_section_label: FASTA/FASTQ manipulation
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  tool_panel_section_label: FASTA/FASTQ manipulation
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  tool_panel_section_label: FASTA/FASTQ manipulation
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  tool_panel_section_label: FASTA/FASTQ manipulation
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  tool_panel_section_label: FASTA/FASTQ manipulation
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  tool_panel_section_label: FASTA/FASTQ manipulation
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  tool_panel_section_label: FASTA/FASTQ manipulation
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  tool_panel_section_label: FASTA/FASTQ manipulation
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  tool_panel_section_label: FASTA/FASTQ manipulation
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  tool_panel_section_label: FASTA/FASTQ manipulation
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  tool_panel_section_label: FASTA/FASTQ manipulation
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  tool_panel_section_label: FASTA/FASTQ manipulation
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  tool_panel_section_label: FASTA/FASTQ manipulation
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  tool_panel_section_label: FASTA/FASTQ manipulation
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