clustermq via Job Launcher

[michaelmayer2]

When using singularity and clustermq and launching clustermq jobs from the Job Launcher, the jobs are not properly run and the pre-processed template listed in the .out file, e.g.

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ZS51YnVudHUyMDA0LmltZzs=
* The library is already synchronized with the lockfile.
[1] "#!/bin/sh\n#SBATCH --job-name=cmq9120\n#SBATCH --output=cmq9120-%a.log # yo
u can add .%a for array index\n#SBATCH --error=cmq9120-%a.log\n#SBATCH --mem-per
-cpu=1024\n#SBATCH --array=1-4\n#SBATCH --cpus-per-task=1\n#SBATCH --singularity
-container=r-session-complete.ubuntu2004.img\n###SBATCH --singularity-bind=/var/
spool/slurmd\n\nulimit -v $(( 1024 * 1024 ))\nCMQ_AUTH=kcruv R --no-save --no-re
store -e 'clustermq:::worker(\"tcp://all-dy-rstudio-1:9120\")'\n"

a517ba9a76e048d9907316b37bad4c1a