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Penguin performance for ITS/18S assembly and potential implementation for metagenome binning? #51

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metaganal opened this issue Dec 20, 2024 · 0 comments
Open

Penguin performance for ITS/18S assembly and potential implementation for metagenome binning? #51

metaganal opened this issue Dec 20, 2024 · 0 comments

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@metaganal
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Dear Plass/Penguin team

I'm curious if it is possible to assemble 18S/ITS genes from metagenomes with penguin or does the problem with ambiguous extension will not allow this?

My second question, although the penguin paper mentioned suboptimal assembly for prokaryote genome, have you tried utilizing penguin assembly as input to metagenome binning pipeline (e.g. metabat2) or is it not recommended to do so?
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