From 5ac4c80a5f9bf2d991bea211243b2fcac07cfe30 Mon Sep 17 00:00:00 2001
From: Annika Jochheim <annika.jochheim@mpinat.mpg.de>
Date: Wed, 12 Jun 2024 22:58:36 +0200
Subject: [PATCH] added shellcheck disable line

---
 data/guidedNuclAssemble.sh | 1 +
 1 file changed, 1 insertion(+)

diff --git a/data/guidedNuclAssemble.sh b/data/guidedNuclAssemble.sh
index 2fbfc69a..bfc5308e 100644
--- a/data/guidedNuclAssemble.sh
+++ b/data/guidedNuclAssemble.sh
@@ -103,6 +103,7 @@ while [ $STEP -lt $NUM_IT ]; do
 
     # 3. Ungapped alignment protein 2 nucl
     if notExists "${TMP_PATH_GUIDED_ASSEMBLY}/aln_nucl_$STEP.done"; then
+        # shellcheck disable=SC2086
         "$MMSEQS" proteinaln2nucl "$INPUT_NUCL" "$INPUT_NUCL" "$INPUT_AA" "$INPUT_AA" "${TMP_PATH_GUIDED_ASSEMBLY}/aln_$STEP" "${TMP_PATH_GUIDED_ASSEMBLY}/aln_nucl_$STEP" ${PROTEIN_ALN_2_NUCL_PAR} \
             || fail "Ungapped alignment 2 nucl step died"
         deleteIncremental "$PREV_ALN_NUCL"