DESCRIPTION

Package: SeuratWrappers
Title: Community-Provided Methods and Extensions for the Seurat Object
Version: 0.4.0
Date: 2024-11-20
Authors@R: c(
  person(given = 'Andrew', family = 'Butler', email = 'abutler@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0003-3608-0463')),
  person(given = "Saket", family = "Choudhary", email = "schoudhary@nygenome.org", role = "ctb", comment = c(ORCID = "0000-0001-5202-7633")),
  person(given = 'David', family = 'Collins', email = 'dcollins@nygenome.org', role = 'ctb', comment = c(ORCID = '0000-0001-9243-7821')),
  person(given = "Yuhan", family = "Hao", email = "yhao@nygenome.org", role = "ctb", comment = c(ORCID = "0000-0002-1810-0822")),
  person(given = "Austin", family = "Hartman", email = "ahartman@nygenome.org", role = "ctb", comment = c(ORCID = "0000-0001-7278-1852")),
  person(given = 'Paul', family = 'Hoffman', email = 'nygcSatijalab@nygenome.org', role = c('aut', 'cre'), comment = c(ORCID = '0000-0002-7693-8957')),
  person(given = "Gesmira", family = "Molla", email = 'gmolla@nygenome.org', role = 'ctb', comment = c(ORCID = '0000-0002-8628-5056')),
  person(given = 'Rahul', family = 'Satija', email = 'rsatija@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0001-9448-8833')),
  person(given = 'Tim', family = 'Stuart', email = 'tstuart@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0002-3044-0897'))
  )
Description: SeuratWrappers is a collection of community-provided methods and
    extensions for Seurat, curated by the Satija Lab at NYGC. These methods
    comprise functionality not presently found in Seurat, and are able to be
    updated much more frequently.
License: GPL-3 | file LICENSE
Remotes: welch-lab/liger,
    hms-dbmi/conos,
    immunogenomics/harmony,
    immunogenomics/presto,
    satijalab/seurat-data,
    velocyto-team/velocyto.R,
    SaskiaFreytag/schex@031320d,
    cole-trapnell-lab/monocle3,
    mojaveazure/seurat-disk,
    powellgenomicslab/Nebulosa,
    atakanekiz/CIPR-Package,
    prabhakarlab/Banksy
Depends:
    R (>= 3.5.0)
biocViews:
Imports:
    BiocManager,
    cowplot,
    ggplot2,
    igraph,
    Matrix,
    methods,
    remotes,
    rsvd,
    Seurat (>= 5.0.0),
    stats,
    utils,
    rlang
Collate:
    'internal.R'
    'alevin.R'
    'alra.R'
    'banksy.R'
    'cellbrowser.R'
    'cogaps.R'
    'conos.R'
    'fast_mnn.R'
    'fast_mnn_v5.R'
    'glmpca.R'
    'liger.R'
    'miqc.R'
    'monocle3.R'
    'pacmap.R'
    'presto.R'
    'scVI.R'
    'tricycle.R'
    'velocity.R'
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
Suggests:
    cipr,
    conos,
    rliger (>= 0.5.0),
    harmony,
    batchelor,
    SeuratData,
    SeuratDisk,
    velocyto.R,
    schex,
    tximport,
    fishpond,
    monocle3,
    CoGAPS,
    glmpca,
    Nebulosa,
    presto,
    flexmix,
    tricycle,
    Banksy