setup.py

#!/usr/bin/env python

# Note: To use the 'upload' functionality of this file, you must:
#   $ pipenv install twine --dev

import os
import sys
from datetime import datetime
from shutil import rmtree

from setuptools import Command, find_packages, setup

# Package meta-data.
NAME = "dexp"
DESCRIPTION = "Light-sheet Dataset EXploration and Processing"
URL = "https://github.com/royerlab/dexp"
EMAIL = "jordao.bragantini@czbiohub.org, ahmetcan.solak@czbiohub.org, bin.yang@czbiohub.org, loic.royer@czbiohub.org"
AUTHOR = "Jordao Bragantini, Ahmet Can Solak, Bin Yang, Loic A Royer"
REQUIRES_PYTHON = ">=3.7.0"

now = datetime.now()
seconds_since_midnight = (now - now.replace(hour=0, minute=0, second=0, microsecond=0)).total_seconds()
minutes_since_midnight = int(seconds_since_midnight // 60)
ten_minutes_since_midnight = int(seconds_since_midnight // 600)
VERSION = datetime.today().strftime("%Y.%m.%d") + f".{minutes_since_midnight}"
print(f"Version: {VERSION}")

CUPY_VERSION = "10.1.0"

# What packages are required for this module to be executed?
REQUIRED = [
    "numpy>=1.20",
    "scipy>=1.8.0",
    "numcodecs",
    "scikit-image",
    "tifffile",
    "tqdm",
    "numexpr",
    "joblib",
    "pytest",
    "click>=8.0.0",
    "dask",
    "dask-image",
    "dask-cuda",
    "distributed",
    "zarr",
    "cachey",
    "gputil",
    "gpustat",
    "arbol",
    "colorcet",
    "PyYAML",
    "cairocffi",
    "blosc",
    "seaborn",
    "ome-zarr",
]

# What packages are optional?
EXTRAS = {
    "source": [
        f"cupy=={CUPY_VERSION}",
    ],
    "cuda114": [
        f"cupy-cuda114=={CUPY_VERSION}",
    ],
    "cuda113": [
        f"cupy-cuda113=={CUPY_VERSION}",
    ],
    "cuda112": [
        f"cupy-cuda112=={CUPY_VERSION}",
    ],
    "cuda111": [
        f"cupy-cuda111=={CUPY_VERSION}",
    ],
    "cuda110": [
        f"cupy-cuda110=={CUPY_VERSION}",
    ],
    "cuda102": [
        f"cupy-cuda102=={CUPY_VERSION}",
    ],
    "cuda101": [
        f"cupy-cuda101=={CUPY_VERSION}",
    ],
    "cuda100": [
        f"cupy-cuda100=={CUPY_VERSION}",
    ],
    "color": [
        "colorama",
        "ansicolors",
    ],
    "napari": [
        "napari[all]",
    ],
    "optional": [
        "edt",
        "higra",
        "pyotf",
        "pyift",
        "tensorstore==0.1.16",
    ],
    "gpu": [
        "gputools",
        "cucim",
    ],
    "dev": [
        "flake8",
        "pytest",
        "coverage",
    ],
}


# The rest you shouldn't have to touch too much :)
# ------------------------------------------------
# Except, perhaps the License and Trove Classifiers!
# If you do change the License, remember to change the Trove Classifier for that!

here = os.path.abspath(os.path.dirname(__file__))

# Import the README and use it as the long-description.
# Note: this will only work if 'README.md' is present in your MANIFEST.in file!
try:
    with open(os.path.join(here, "README.md"), encoding="utf-8") as f:
        long_description = "\n" + f.read()
except FileNotFoundError:
    long_description = DESCRIPTION

# Load the package's __version__.py module as a dictionary.
about = {}
if not VERSION:
    project_slug = NAME.lower().replace("-", "_").replace(" ", "_")
    with open(os.path.join(here, project_slug, "__version__.py")) as f:
        exec(f.read(), about)
else:
    about["__version__"] = VERSION


class UploadCommand(Command):
    """Support setup.py upload."""

    description = "Build and publish the package."
    user_options = []

    @staticmethod
    def status(s):
        """Prints things in bold."""
        print(f"\033[1m{s}\033[0m")

    def initialize_options(self):
        pass

    def finalize_options(self):
        pass

    def run(self):

        # install twine if not
        os.system("pip install -y twine --dev")

        try:
            self.status("Removing previous builds…")
            rmtree(os.path.join(here, "dist"))
        except OSError:
            pass

        self.status("Building Source and Wheel (universal) distribution…")
        os.system(f"{sys.executable} setup.py sdist bdist_wheel --universal")

        self.status(f'Uploading version `{about["__version__"]}` of the package to PyPI via Twine…')
        os.system("twine upload dist/*")

        self.status("Pushing git tags…")
        os.system("git tag v{}".format(about["__version__"]))
        os.system("git push --tags")

        sys.exit()


# Where the magic happens:
setup(
    name=NAME,
    version=about["__version__"],
    description=DESCRIPTION,
    long_description=long_description,
    long_description_content_type="text/markdown",
    author=AUTHOR,
    author_email=EMAIL,
    python_requires=REQUIRES_PYTHON,
    url=URL,
    packages=find_packages(exclude=["tests", "*.tests", "*.tests.*", "tests.*"]),
    # If your package is a single module, use this instead of 'packages':
    # py_modules=['mypackage'],
    entry_points={
        "console_scripts": [
            "dexp=dexp.cli.dexp_main:cli",
            "dexp-video=dexp.cli.video_main:cli",
            "dexp-install=dexp.cli.install_main:cli",
        ]
    },
    install_requires=REQUIRED,
    extras_require=EXTRAS,
    include_package_data=True,
    license="BSD 3-Clause",
    license_file="LICENSE.txt",
    classifiers=[
        # Trove classifiers
        # Full list: https://pypi.python.org/pypi?%3Aaction=list_classifiers
        "License :: OSI Approved :: BSD License",
        "Programming Language :: Python",
        "Programming Language :: Python :: 3",
        "Programming Language :: Python :: 3.8",
        "Environment :: GPU :: NVIDIA CUDA :: 11.1",
        "Development Status :: 3 - Alpha",
        "Intended Audience :: Science/Research",
        "Topic :: Scientific/Engineering :: Image Processing",
        "Topic :: Scientific/Engineering :: Visualization",
    ],
    # $ setup.py publish support.
    cmdclass={"upload": UploadCommand},
)