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This document provides instructions on how to install Cassiopee and its dependencies.
sudo apt update
sudo apt install -y gpg-agent wget
wget -O- https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | gpg --dearmor | sudo tee /usr/share/keyrings/oneapi-archive-keyring.gpg > /dev/null
echo "deb [signed-by=/usr/share/keyrings/oneapi-archive-keyring.gpg] https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list
sudo apt update
sudo apt install intel-hpckitwget https://registrationcenter-download.intel.com/akdlm/IRC_NAS/9a98af19-1c68-46ce-9fdd-e249240c7c42/l_BaseKit_p_2024.2.0.634_offline.sh
wget https://registrationcenter-download.intel.com/akdlm/IRC_NAS/d4e49548-1492-45c9-b678-8268cb0f1b05/l_HPCKit_p_2024.2.0.635_offline.sh
sh ./l_BaseKit_p_2024.2.0.634_offline.sh -a --silent --cli --eula accept
sh ./l_HPCKit_p_2024.2.0.635_offline.sh -a --silent --cli --eula acceptsudo apt-get install intel-opencl-icd
wget https://registrationcenter-download.intel.com/akdlm/IRC_NAS/992857b9-624c-45de-9701-f6445d845359/l_BaseKit_p_2023.2.0.49397_offline.sh
wget https://registrationcenter-download.intel.com/akdlm/IRC_NAS/0722521a-34b5-4c41-af3f-d5d14e88248d/l_HPCKit_p_2023.2.0.49440_offline.sh
sudo sh ./l_BaseKit_p_2023.2.0.49397_offline.sh
sudo sh ./l_HPCKit_p_2023.2.0.49440_offline.shThis script removes any directory in the home directory that contains 'conda3' in its name, deletes the base directory of the current conda installation, and removes conda configuration files.
rm -rf ~/*conda3*
rm -rf $(conda info --base)
rm -f "${HOME}/.condarc"
rm -fr "${HOME}/.conda"Miniforge is a minimal conda installer. It is recommended over Anaconda or Miniconda for managing conda environments. This is because Miniforge is a smaller, more lightweight solution that is focused on providing conda and Python, making it faster and easier to install. It also supports more platforms compared to Anaconda and Miniconda and conda-forge comes as the default channel.
wget "https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-$(uname)-$(uname -m).sh"
bash Miniforge3-$(uname)-$(uname -m).shPlease note that, as of now, we need to use setuptools up to version 58.0.4 due to the deprecation of certain functions that have not yet been updated in Cassiopee.
Here are the steps to set up the environment to deactivate any currently active environment, remove the 'dnami' environment if it exists, create a new conda environment and activate it.
conda config --set auto_activate_base false
conda deactivate
conda remove --name dnami --all
conda create --name dnami
conda activate dnami
conda install setuptools=58.0 scons sympy scipy matplotlib hdf5
conda install openjdk
conda install slepc4py petscc4py
conda install openmpi openmpi-mpicc openmpi-mpicxx openmpi-mpifort cxx-compiler cython # python-devtoolsUpdate your package lists for upgrades and new package installations This ensures you have the latest versions of all packages Remove all unused packages and keep your system clean Install the necessary packages build-essential: contains references to all the packages needed to compile a Debian package. It generally includes the gcc/g++ compilers and libraries and some other utilities. python3-dev: contains the header files you need to build Python extensions. python3-numpy: is the fundamental package for array computing with Python. scons: is a software construction tool. gfortran: the GNU Fortran compiler. xorg-dev: X.Org X Window System development libraries. They are needed for GUI applications. libhdf5-dev: contains the header files and static libraries for developing programs that will use Hierarchical Data Format 5 (HDF5). libglfw3-dev: is the development files for GLFW 3 library, which is a free, open source, multi-platform library for creating windows with OpenGL contexts. libgl1-mesa-dev, libglu1-mesa-dev: are the development files for the Mesa 3D graphics library. default-jdk bison
sudo apt update
sudo apt -y autoremove
sudo apt install -y build-essential python3-dev python3-numpy scons gfortran xorg-dev libhdf5-dev libglfw3-dev libgl1-mesa-dev libglu1-mesa-dev default-jdk bisonInstall Command Line Tools for XCode:
xcode-select --installInstall Homebrew:
/bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/HEAD/install.sh)"and then
brew update
brew install gcc openmpi numpy scons hdf5 glfw Install XQuartz
- Visit XQuartz website.
- Download the latest
.dmgfile. - Open the
.dmgfile and runXQuartz.pkg.
The following instructions will guide you through the process of installing Cassiopee.
First, you need to set up some environment variables. Add the following lines to your .bashrc or .bash_profile file:
This is the directory where the Cassiopee source code will be stored
This is the directory where Cassiopee will be installed
Also add an alias
export CASSIOPEE_SOURCE_ROOT="$HOME/cassiopee"
export CASSIOPEE=$CASSIOPEE_SOURCE_ROOT/3.6
alias c='cassiopee'After adding these lines, you need to reload your .bashrc or .bash_profile file. You can do this by closing and reopening your terminal, or by running the source command:
source ~/.bashrc
# or
source ~/.bash_profileNext, you need to clone the Cassiopee repository and navigate into it:
git clone --depth 1 https://github.com/ricardofrantz/cassiopee.git
cd cassiopeeFinally, you can install Cassiopee by running the installation script:
./install.shThis will compile and install Cassiopee in the directory specified by the CASSIOPEE environment variable.
Once Cassiopee is installed, you can run it directly from the terminal:
cassiopeeor
cgit clone --depth 1 https://gitlab.inria.fr/tapenade/tapenade.git
cd tapenade
javac -version
./gradlew clean
./gradlew/bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/ricardofrantz/cassiopee/main/cassiopee.sh)"/bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/ricardofrantz/cassiopee/main/tapenade.sh)"=======
Computational Fluid Dynamics pre- and post-processing python modules.
-- Under construction --
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Tutorials
upstream/main