in_out.rst

Input and Output Functions (:py:mod:`violin.in_out`)

This page details the functions which handle the input files and output of VIOLIN.

For more information on the types of accepted inputs, see :doc:`files`.

Functions

.. currentmodule:: in_out

.. autofunction:: input_biorecipes

.. currentmodule:: in_out

.. autofunction:: input_reading

.. currentmodule:: in_out

.. autofunction:: output

Dependencies

Python: pandas and NumPy libraries, and os.path module

VIOLIN: formatting and network modules.

Defaults

Default Reading Columns

.. literalinclude:: ../src/violin/in_out.py
    :language: python
    :lines: 34-37
    :lineno-start: 34

Default Model Columns (From BioRECIPES format)

.. literalinclude:: ../src/violin/in_out.py
    :language: python
    :lines: 38-40
    :lineno-start: 38