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_quarto_EN_epub_word.yml
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project:
type: book
output-dir: _epub_word_EN
resources:
- "CITATION.cff"
- images
- screenshots
- files
- "script.js"
- "webpages.js"
- "webpages.txt"
- "headerEN.html"
execute:
freeze: auto
lang: en
book:
title: "Histopathology Atlas"
subtitle: "Atlas of Pathology with Whole Slide Images"
author:
- name: "Serdar Balcı"
url: "https://www.serdarbalci.com"
affiliation: "Memorial Pathology"
affiliation-url: "https://patoloji.memorial.com.tr/"
orcid: "0000-0002-7852-3851"
- name: Pathologists, Assistants and Technicians
affiliation: "Memorial Pathology & Other Institutions"
affiliation-url: "https://www.histopathologyatlas.com/authors.html"
description: |
Atlas of Pathology with Whole Slide Images
Histopathology Atlas and Notes for Medical Students
Atlas of Histopathology
Notes for Pathology
Virtual Microscope
Virtual Microscopy
Pathology Lecture Notes and Histopathology Atlas is being prepared from Memorial Pathology Archive and collaborators from other institutions.
abstract: |
Atlas of Pathology with Whole Slide Images
Histopathology Atlas and Notes for Medical Students
Pathology Lecture Notes and Histopathology Atlas is being prepared from Memorial Pathology Archive and collaborators from other institutions.
If you want to contribute, please [contact us](https://www.patolojiatlasi.com/contributions.html).
date: last-modified
image: images/coverEN.png
output-file: "HistoPatology-Atlas"
cover-image: images/Histopathology-Atlas-ebook-cover.png
site-url: https://histopathologyatlas.com/
# repo-url: https://github.com/histopathologyatlas/histopathologyatlas.github.io
# google-analytics: "G-7BT7Q4FLT9"
# repo-branch: main
# repo-actions: [edit, issue, source]
sharing: [twitter, facebook, linkedin]
# downloads: [epub, pdf, docx]
search:
location: navbar
type: overlay
copy-button: true
sidebar:
style: floating
search: true
# navbar:
# title: "Pathology Atlas"
# logo: images/coverEN.png
# search: true
# pinned: false
# collapse: true
# right:
# - icon: github
# href: https://github.com/patolojiatlasi
open-graph: true
# locale: tr_TR
# site-name: Pathology Atlas
twitter-card:
creator: "%40serdarbalci"
site: "%40patolojinotlari"
page-navigation: true
page-footer:
border: true
background: light
left: "Copyright 2022, patolojiAI"
# right:
# - icon: github
# href: https://github.com/patolojiatlasi
# - icon: github
# href: https://github.com/pathologyatlas
# - icon: twitter
# href: https://twitter.com/patolojinotlari
# - icon: globe2
# href: https://www.patolojinotlari.com
# - icon: globe2
# href: https://serdarbalci.com
chapters:
- text: "Home Page"
href: index.qmd
- text: "Introduction"
href: introduction_epub_word_EN.qmd
- part: "---"
- part: "General Pathology"
chapters:
- text: "Techniques Used in Pathology"
href: techniques_epub_word_EN.qmd
- text: "Intracellular Accumulations"
href: intracellular-accumulations_epub_word_EN.qmd
- text: "Extracellular Accumulations"
href: extracellular-accumulations_epub_word_EN.qmd
- text: "Cellular Injury"
href: cell-injury_epub_word_EN.qmd
# - text: "Hemodynamic Disorders"
# href: hemodinamik-bozukluklar_epub_word_EN.qmd
- text: "Ischemia and Necrosis"
href: ischemia-necrosis_epub_word_EN.qmd
- text: "Congestion"
href: congestion_epub_word_EN.qmd
# - text: "Inflammation"
# href: inflamasyon_epub_word_EN.qmd
- text: "Amyloidosis"
href: amyloidosis_epub_word_EN.qmd
- text: "Repair Mechanisms"
href: repair_epub_word_EN.qmd
- text: "Erosion"
href: erosion_epub_word_EN.qmd
- part: "Inflamation"
chapters:
- text: "Acute inflammation"
href: acute-inflammation_epub_word_EN.qmd
- text: "Chronic inflammation"
href: chronic-inflammation_epub_word_EN.qmd
- text: "Granulamatous inflammation"
href: granulamatous-inflammation_epub_word_EN.qmd
# - inflamasyon_epub_word_EN.qmd
# - part: "Infectious Diseases"
# chapters:
# - text: "Viruses"
# href: virus_epub_word_EN.qmd
# - text: "Bacteria"
# href: bacteria_epub_word_EN.qmd
# - text: "Fungi"
# href: fungi_epub_word_EN.qmd
# - text: "Parasites"
# href: parasites_epub_word_EN.qmd
# - part: "Neoplasia, Tumor Pathology Basics"
# chapters:
# - text: "Benign Tumors"
# href: benign_epub_word_EN.qmd
# - text: "Hamartoma"
# href: hamartoma_epub_word_EN.qmd
# - text: "Heterotopia"
# href: heterotopia_epub_word_EN.qmd
# - text: "Metaplasia"
# href: metaplasia_epub_word_EN.qmd
# - text: "Carcinogenesis"
# href: carcinogenesis_epub_word_EN.qmd
# - text: "The properties of Malignant Tumors"
# href: malignant_epub_word_EN.qmd
# - text: "Metastasis"
# href: metastasis_epub_word_EN.qmd
# - text: "Tumor Spread to Other Organs"
# href: tumor-spread_epub_word_EN.qmd
# - part: "Prognostic Morphologic Features of Neoplasms"
# chapters:
# - text: "Venous Invasion"
# href: venous-invasion_epub_word_EN.qmd
# - text: "Extramural Venous Invaasion"
# href: extramural-venous-invasion_epub_word_EN.qmd
# - part: "Hematopathology"
# chapters:
# # - hematopatoloji_epub_word_EN.qmd
# - text: "Hodgkin Lymphoma"
# href: hodgkin_epub_word_EN.qmd
# - part: "Gastrointestinal System"
# chapters:
# - gastro_epub_word_EN.qmd
# - text: "Esophagus"
# href: esophagus_epub_word_EN.qmd
# - text: "Stomach"
# href: stomach_epub_word_EN.qmd
# - text: "Gastritis"
# href: gastritis_epub_word_EN.qmd
# - text: "Duodenum"
# href: duodenum_epub_word_EN.qmd
# - text: "Colon"
# href: colon_epub_word_EN.qmd
# - text: "Crohn's Disease"
# href: crohn_epub_word_EN.qmd
# - part: "Liver"
# chapters:
# - text: "Liver Tumors"
# href: liver_epub_word_EN.qmd
# - text: "Benign Liver Tumors"
# href: benign-liver-tumors_epub_word_EN.qmd
# - part: "Pancreatobiliary system"
# chapters:
# - text: "Pancreas"
# href: pancreas_epub_word_EN.qmd
# - text: "Pancreas Ductal Adenocarcinoma"
# href: pdac_epub_word_EN.qmd
# - text: "Gallbladder"
# href: gallbladder_epub_word_EN.qmd
# - text: "Ampulla of Vater"
# href: ampulla-vater_epub_word_EN.qmd
# - part: "Lung"
# chapters:
# - text: "Neuroendocrine"
# href: neuroendocrine_epub_word_EN.qmd
# - part: "Mezotel"
# chapters:
# - text: "Abdomen"
# href: mesothelial_epub_word_EN.qmd
# - part: "Gynecopathology"
# chapters:
# - text: "Gynecopathology"
# href: gynecologic_epub_word_EN.qmd
# - text: "Genital System"
# href: genital_epub_word_EN.qmd
# - text: "Cervix"
# href: cervix_epub_word_EN.qmd
# - text: "Endometrium"
# href: endometrium_epub_word_EN.qmd
# - text: "Endometriosis"
# href: endometriosis_epub_word_EN.qmd
# - part: "Uropathology"
# chapters:
# - text: "Uropathology"
# href: urinary_epub_word_EN.qmd
# - text: "Kidney Tumors / Renal Tumors"
# href: kidney_epub_word_EN.qmd
# - text: "Prostate"
# href: prostate_epub_word_EN.qmd
# - part: "Endocrine System"
# chapters:
# - text: "Pituitary Adenoma"
# href: pituitary_epub_word_EN.qmd
# # - part: "Breast"
# # chapters:
# # - text: "Breast Tumors"
# # href: meme.md
# - part: "Head and Neck"
# chapters:
# - text: "Nasopharynx"
# href: nasopharynx_epub_word_EN.qmd
# - text: "Ear"
# href: ear_epub_word_EN.qmd
# - text: "Salivary Gland"
# href: salivary_epub_word_EN.qmd
# - part: "Central Nervous System"
# chapters:
# - text: "Glioma"
# href: glioma_epub_word_EN.qmd
# - text: "Meningioma"
# href: meningioma_epub_word_EN.qmd
# - text: "Vascular Lesions"
# href: cns-vascular_epub_word_EN.qmd
# - part: "Bone"
# chapters:
# - text: "Bone Tumors"
# href: bone_epub_word_EN.qmd
# - part: "Soft Tissue"
# chapters:
# - text: "Adipose Tissue"
# href: adipose_epub_word_EN.qmd
# - part: "Pediatric and Perinatal"
# chapters:
# - text: "Placenta"
# href: placenta_epub_word_EN.qmd
# - part: "---"
# - part: "Special Collections"
# chapters:
# - text: "GBDAtlas"
# href: gbd_epub_word_EN.qmd
# - text: "Hacettepe Case of Month"
# href: hacettepecom_epub_word_EN.qmd
# - text: "BSAtlas"
# href: bs_epub_word_EN.qmd
# - text: "ICEtlas"
# href: ice_epub_word_EN.qmd
# - text: "Similar Websites"
# href: wsi_epub_word_EN.qmd
- part: "---"
- references_epub_word_EN.qmd
- part: "---"
appendices:
- text: "Authors and Contributors"
href: authors_epub_word_EN.qmd
# - yonetim-gelistirme.md
- text: "Contributions are welcome"
href: contributions_epub_word_EN.qmd
- text: "Comments are welcome"
href: comments_epub_word_EN.qmd
# - text: "List"
# href: listing_epub_word_EN.qmd
# - listing2_epub_word_EN.qmd
format:
epub:
toc: true
epub-cover-image: images/coverEN.png
execute:
warning: false
css:
epub.css
theme:
light: flatly
dark: darkly
page-layout: full
# grid:
# body-width: 1800px # default 900px
# self-contained: false
# anchor-sections: true
# link-external-icon: true
# link-external-newwindow: true
# link-external-filter: '(^(?:http:|https:)\/\/www\.histopathologyatlas\.com\/)|(^(?:http:|https:)\/\/www\.patolojiatlasi\.com\/)|(^(?:http:|https:)\/\/images.patolojiatlasi\.com\/)|(^(?:http:|https:)\/\/pathologyatlas\.github\.io\/)|(^(?:http:|https:)\/\/patolojiatlasi\.github\.io\/)'
# citations-hover: true
# footnotes-hover: true
# number-depth: 2
# include-in-header:
# - text: |
# <script src="script.js"></script>
# <script src="webpages.js"></script>
# - file: "./headerTR.html"
# https://quarto.org/docs/reference/formats/epub.html
docx:
toc: true
section-numbers: true
highlight-style: github
toc-depth: 2
toc-title: "İçindekiler"
number-sections: true
number-depth: 2
execute:
warning: false
# theme:
# light: flatly
# dark: darkly
# page-layout: full
# grid:
# body-width: 1800px # default 900px
# cover-image: images/coverTR.png
# css: styles.css
# self-contained: false
# anchor-sections: true
# link-external-icon: true
# link-external-newwindow: true
# link-external-filter: '(^(?:http:|https:)\/\/www\.histopathologyatlas\.com\/)|(^(?:http:|https:)\/\/www\.patolojiatlasi\.com\/)|(^(?:http:|https:)\/\/images.patolojiatlasi\.com\/)|(^(?:http:|https:)\/\/pathologyatlas\.github\.io\/)|(^(?:http:|https:)\/\/patolojiatlasi\.github\.io\/)'
# citations-hover: true
# footnotes-hover: true
# include-in-header:
# - text: |
# <script src="script.js"></script>
# <script src="webpages.js"></script>
# - file: "./headerTR.html"
# https://quarto.org/docs/output-formats/ms-word.html
# https://quarto.org/docs/reference/formats/docx.html
citation:
type: webpage
container-title: Patoloji Atlası
url: "https://www.histopathologyatlas.com/"
editor: source