forked from MartinVogel/ALPTool
-
Notifications
You must be signed in to change notification settings - Fork 2
/
alpseqtool.m
971 lines (787 loc) · 40.2 KB
/
alpseqtool.m
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
function varargout = alpseqtool(varargin)
% ALPSEQTOOL M-file for alpseqtool.fig
% ALPSEQTOOL, by itself, creates a new ALPSEQTOOL or raises the existing
% singleton*.
%
% H = ALPSEQTOOL returns the handle to a new ALPSEQTOOL or the handle to
% the existing singleton*.
%
% ALPSEQTOOL('CALLBACK',hObject,eventData,handles,...) calls the local
% function named CALLBACK in ALPSEQTOOL.M with the given input arguments.
%
% ALPSEQTOOL('Property','Value',...) creates a new ALPSEQTOOL or raises the
% existing singleton*. Starting from the left, property value pairs are
% applied to the GUI before alpseqtool_OpeningFcn gets called. An
% unrecognized property name or invalid value makes property application
% stop. All inputs are passed to alpseqtool_OpeningFcn via varargin.
%
% *See GUI Options on GUIDE's Tools menu. Choose "GUI allows only one
% instance to run (singleton)".
%
% See also: GUIDE, GUIDATA, GUIHANDLES
% Edit the above text to modify the response to help alpseqtool
% Last Modified by GUIDE v2.5 20-Feb-2014 11:38:24
% Begin initialization code - DO NOT EDIT
gui_Singleton = 0;
gui_State = struct('gui_Name', mfilename, ...
'gui_Singleton', gui_Singleton, ...
'gui_OpeningFcn', @alpseqtool_OpeningFcn, ...
'gui_OutputFcn', @alpseqtool_OutputFcn, ...
'gui_LayoutFcn', [] , ...
'gui_Callback', []);
if nargin && ischar(varargin{1})
gui_State.gui_Callback = str2func(varargin{1});
end
if nargout
[varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
else
gui_mainfcn(gui_State, varargin{:});
end
% End initialization code - DO NOT EDIT
% ========================================================================
% --- Executes just before alpseqtool is made visible.
function alpseqtool_OpeningFcn(hObject, eventdata, handles, varargin) %#ok<*INUSL,*DEFNU,*INUSD>
% This function has no output args, see OutputFcn.
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% varargin command line arguments to alpseqtool (see VARARGIN)
% Choose default command line output for alpseqtool
handles.output = hObject;
% check parameter
if size(varargin,2) >= 2 && isa(varargin{1}, 'alpdevice') && ...
isa(varargin{2}, 'alpsequence')
device = varargin{1};
sequence = varargin{2};
else
delete(hObject);
return;
end
% store device in this figure's "deviceid" control
set(handles.deviceid, 'UserData', device);
set(handles.deviceid, 'String', sprintf('Device ID: %i', device.deviceid));
% store sequence in this figure's "deviceid" control
set(handles.sequenceid, 'UserData', sequence);
set(handles.sequenceid, 'String', sprintf('Sequence ID: %i', sequence.sequenceid));
set(handles.binarymode, 'String', {'Normal(D)', 'Uninterrupted'});
set(handles.binarymode, 'UserData', {device.api.DEFAULT, device.api.BIN_UNINTERRUPTED});
set(handles.dataformat, 'String', {'MSB(D)', 'LSB', 'TopDown', 'BottomUp'});
set(handles.dataformat, 'UserData', {device.api.DEFAULT, device.api.DATA_LSB_ALIGN, device.api.DATA_BINARY_TOPDOWN, device.api.DATA_BINARY_BOTTOMUP});
% Update handles structure
guidata(hObject, handles);
% inquire sequence settings
inquire_Callback(handles.inquire, eventdata, handles);
% set binary mode to "Uninterrupted"
set(handles.binarymode, 'Value', 2);
binarymode_Callback(handles.binarymode, eventdata, handles);
% UIWAIT makes alpseqtool wait for user response (see UIRESUME)
% uiwait(handles.alpseqtoolfigure);
% ========================================================================
% --- Executes when user attempts to close alpseqtoolfigure.
function alpseqtoolfigure_CloseRequestFcn(hObject, eventdata, handles)
% hObject handle to alpseqtoolfigure (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% device & sequence handle
device = get(handles.deviceid, 'UserData');
sequence = get(handles.sequenceid, 'UserData');
% remove sequence
retval = sequence.free();
if retval == device.api.SEQ_IN_USE
answer = questdlg('Sequence is currently in use. Stop playback and delete sequence?', 'Please specify', 'Yes', 'No');
if ~strcmp(answer, 'Yes')
return;
else
device.stop();
retval = sequence.free();
end
end
if (retval == device.api.NOT_IDLE) || (retval == device.api.NOT_READY)
answer = questdlg('ALP device is currently not idle/not ready. Stop playback and delete sequence?', 'Please specify', 'Yes', 'No');
if ~strcmp(answer, 'Yes')
return;
else
device.stop();
retval = sequence.free();
end
end
if retval ~= device.api.OK
uiwait(msgbox(sprintf('Error freeing sequence, return value was %i.', retval)));
end
% Hint: delete(hObject) closes the figure
delete(hObject);
% ========================================================================
% --- Outputs from this function are returned to the command line.
function varargout = alpseqtool_OutputFcn(hObject, eventdata, handles)
% varargout cell array for returning output args (see VARARGOUT);
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Get default command line output from handles structure
varargout{1} = handles.output;
% ========================================================================
% --- Executes on button press in inquire.
function inquire_Callback(hObject, eventdata, handles)
% hObject handle to inquire (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% device & sequence handle
device = get(handles.deviceid, 'UserData');
sequence = get(handles.sequenceid, 'UserData');
% bit planes
[ret, uservar] = sequence.inquire(device.api.BITPLANES);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not inquire bit planes of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error inquiring sequence', 'modal'));
return;
else
set(handles.bitplanes, 'String', sprintf('Bit Planes: %i', uservar));
set(handles.bitplanes, 'UserData', uservar);
end
% frame number
[ret, uservar] = sequence.inquire(device.api.PICNUM);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not inquire frame number of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error inquiring sequence', 'modal'));
return;
else
set(handles.framecount, 'String', sprintf('Frame Count: %i', uservar));
set(handles.framecount, 'UserData', uservar);
end
% on time
[ret, uservar] = sequence.inquire(device.api.ON_TIME);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not inquire on time of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error inquiring sequence', 'modal'));
return;
else
set(handles.ontime, 'String', sprintf('On Time: %i', uservar));
set(handles.ontime, 'UserData', uservar);
end
% off time
[ret, uservar] = sequence.inquire(device.api.OFF_TIME);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not inquire off time of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error inquiring sequence', 'modal'));
return;
else
set(handles.offtime, 'String', sprintf('Off Time: %i', uservar));
set(handles.offtime, 'UserData', uservar);
end
% first frame
[ret, uservar] = sequence.inquire(device.api.FIRSTFRAME);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not inquire first frame of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error inquiring sequence', 'modal'));
return;
else
set(handles.firstframe, 'String', sprintf('%i', uservar));
set(handles.firstframe, 'UserData', uservar);
end
% last frame
[ret, uservar] = sequence.inquire(device.api.LASTFRAME);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not inquire last frame of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error inquiring sequence', 'modal'));
return;
else
set(handles.lastframe, 'String', sprintf('%i', uservar));
set(handles.lastframe, 'UserData', uservar);
end
% display bits
[ret, uservar] = sequence.inquire(device.api.BITNUM);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not inquire bit depth for display of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error inquiring sequence', 'modal'));
return;
else
set(handles.displaybits, 'String', sprintf('%i', uservar));
set(handles.displaybits, 'UserData', uservar);
end
% sequence repeat
[ret, uservar] = sequence.inquire(device.api.SEQ_REPEAT);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not inquire repetition count of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error inquiring sequence', 'modal'));
return;
else
set(handles.repetitions, 'String', sprintf('%i', uservar));
set(handles.repetitions, 'UserData', uservar);
end
% binary dark phase mode
[ret, uservar] = sequence.inquire(device.api.BIN_MODE);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not inquire binary dark phase status of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error inquiring device', 'modal'));
return;
else
entries = get(handles.binarymode, 'UserData');
for i=1:size(entries,2)
if uservar == entries{i}
set(handles.binarymode, 'Value', i);
end
end
end
% data format
[ret, uservar] = sequence.inquire(device.api.DATA_FORMAT);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not inquire data format of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error inquiring device', 'modal'));
return;
else
entries = get(handles.dataformat, 'UserData');
for i=1:size(entries,2)
if uservar == entries{i}
set(handles.dataformat, 'Value', i);
end
end
end
% picture(frame) time & min picture time
[ret, uservar] = sequence.inquire(device.api.PICTURE_TIME);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not inquire frame time of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error inquiring sequence', 'modal'));
return;
else
set(handles.picturetime, 'String', sprintf('%i', uservar));
end
[ret, uservar] = sequence.inquire(device.api.MIN_PICTURE_TIME);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not inquire minimum frame time of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error inquiring sequence', 'modal'));
return;
else
set(handles.minpicturetime, 'String', sprintf('(min %i us)', uservar));
end
% display(illumination) time & min display time
[ret, uservar] = sequence.inquire(device.api.ILLUMINATE_TIME);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not inquire display time of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error inquiring sequence', 'modal'));
return;
else
set(handles.illuminatetime, 'String', sprintf('%i', uservar));
end
[ret, uservar] = sequence.inquire(device.api.MIN_ILLUMINATE_TIME);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not inquire minimum display time of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error inquiring sequence', 'modal'));
return;
else
set(handles.minilluminatetime, 'String', sprintf('(min %i us)', uservar));
end
% trigger delay and max trigger delay
[ret, uservar] = sequence.inquire(device.api.TRIGGER_DELAY);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not inquire trigger delay of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error inquiring sequence', 'modal'));
return;
else
set(handles.triggerdelay, 'String', sprintf('%i', uservar));
end
[ret, uservar] = sequence.inquire(device.api.MAX_TRIGGER_DELAY);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not inquire maximum trigger delay of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error inquiring sequence', 'modal'));
return;
else
set(handles.maxtriggerdelay, 'String', sprintf('(max %i us)', uservar));
end
% VD trigger delay and max VD trigger delay
[ret, uservar] = sequence.inquire(device.api.VD_DELAY);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not inquire VD trigger delay of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error inquiring sequence', 'modal'));
return;
else
set(handles.vddelay, 'String', sprintf('%i', uservar));
end
[ret, uservar] = sequence.inquire(device.api.MAX_VD_DELAY);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not inquire maximum VD trigger delay of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error inquiring sequence', 'modal'));
return;
else
set(handles.maxvddelay, 'String', sprintf('(max %i us)', uservar));
end
set(handles.set, 'Enable', 'on');
% ========================================================================
function firstframe_Callback(hObject, eventdata, handles)
% hObject handle to firstframe (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of firstframe as text
% str2double(get(hObject,'String')) returns contents of firstframe as a double
device = get(handles.deviceid, 'UserData');
sequence = get(handles.sequenceid, 'UserData');
try
entry = str2double(get(hObject, 'String'));
catch
entry = 0;
end
ret = sequence.control(device.api.FIRSTFRAME, entry);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not set first frame of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error controlling sequence', 'modal'));
return;
end
% ========================================================================
% --- Executes during object creation, after setting all properties.
function firstframe_CreateFcn(hObject, eventdata, handles)
% hObject handle to firstframe (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
set(hObject, 'String', '0');
% ========================================================================
function lastframe_Callback(hObject, eventdata, handles)
% hObject handle to lastframe (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of lastframe as text
% str2double(get(hObject,'String')) returns contents of lastframe as a double
device = get(handles.deviceid, 'UserData');
sequence = get(handles.sequenceid, 'UserData');
try
entry = str2double(get(hObject, 'String'));
catch
picnum = get(handles.framecount, 'UserData');
if ~isempty(picnum)
entry = picnum;
else
entry = 1;
end
end
ret = sequence.control(device.api.LASTFRAME, entry);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not set last frame of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error controlling sequence', 'modal'));
return;
end
% ========================================================================
% --- Executes during object creation, after setting all properties.
function lastframe_CreateFcn(hObject, eventdata, handles)
% hObject handle to lastframe (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
set(hObject, 'String', '0');
% ========================================================================
function displaybits_Callback(hObject, eventdata, handles)
% hObject handle to displaybits (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of displaybits as text
% str2double(get(hObject,'String')) returns contents of displaybits as a double
device = get(handles.deviceid, 'UserData');
sequence = get(handles.sequenceid, 'UserData');
try
entry = str2double(get(hObject, 'String'));
catch
bitplanes = get(handles.bitplanes, 'UserData');
if ~isempty(picnum)
entry = bitplanes;
else
entry = 1;
end
end
ret = sequence.control(device.api.BITNUM, entry);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not set display bit depth of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error controlling sequence', 'modal'));
return;
end
% ========================================================================
% --- Executes during object creation, after setting all properties.
function displaybits_CreateFcn(hObject, eventdata, handles)
% hObject handle to displaybits (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
set(hObject, 'String', '0');
% ========================================================================
function repetitions_Callback(hObject, eventdata, handles)
% hObject handle to repetitions (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of repetitions as text
% str2double(get(hObject,'String')) returns contents of repetitions as a double
device = get(handles.deviceid, 'UserData');
sequence = get(handles.sequenceid, 'UserData');
try
entry = str2double(get(hObject, 'String'));
catch
entry = 1;
end
ret = sequence.control(device.api.SEQ_REPEAT, entry);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not set sequence repetitions of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error controlling sequence', 'modal'));
return;
end
% ========================================================================
% --- Executes during object creation, after setting all properties.
function repetitions_CreateFcn(hObject, eventdata, handles)
% hObject handle to repetitions (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
set(hObject, 'String', '0');
% ========================================================================
% --- Executes on selection change in binarymode.
function binarymode_Callback(hObject, eventdata, handles)
% hObject handle to binarymode (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: contents = get(hObject,'String') returns binarymode contents as cell array
% contents{get(hObject,'Value')} returns selected item from binarymode
device = get(handles.deviceid, 'UserData');
sequence = get(handles.sequenceid, 'UserData');
entries = get(hObject, 'UserData');
entry = entries{get(hObject, 'Value')};
ret = sequence.control(device.api.BIN_MODE, entry);
if ret == device.api.NOT_IDLE
uiwait(msgbox(sprintf('ALP device %i is not in IDLE state - abort setting parameters...', device.deviceid)));
return;
elseif ret == device.api.SEQ_IN_USE
uiwait(msgbox(sprintf('Sequence %i on ALP device %i is currently running. Stop playback and retry.', ...
sequence.sequenceid, device.deviceid)));
return;
elseif ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not set binary dark phase mode of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error controlling sequence', 'modal'));
return;
end
% ========================================================================
% --- Executes during object creation, after setting all properties.
function binarymode_CreateFcn(hObject, eventdata, handles)
% hObject handle to binarymode (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: popupmenu controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
% ========================================================================
% --- Executes on selection change in dataformat.
function dataformat_Callback(hObject, eventdata, handles)
% hObject handle to dataformat (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: contents = get(hObject,'String') returns dataformat contents as cell array
% contents{get(hObject,'Value')} returns selected item from dataformat
device = get(handles.deviceid, 'UserData');
sequence = get(handles.sequenceid, 'UserData');
entries = get(hObject, 'UserData');
entry = entries{get(hObject, 'Value')};
ret = sequence.control(device.api.DATA_FORMAT, entry);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not set data format of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error controlling sequence', 'modal'));
return;
end
% ========================================================================
% --- Executes during object creation, after setting all properties.
function dataformat_CreateFcn(hObject, eventdata, handles)
% hObject handle to dataformat (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: popupmenu controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
% ========================================================================
function picturetime_Callback(hObject, eventdata, handles)
% hObject handle to picturetime (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of picturetime as text
% str2double(get(hObject,'String')) returns contents of picturetime as a double
setseqtiming(handles);
% ========================================================================
% --- Executes during object creation, after setting all properties.
function picturetime_CreateFcn(hObject, eventdata, handles)
% hObject handle to picturetime (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
set(hObject, 'String', '0');
% ========================================================================
function triggerdelay_Callback(hObject, eventdata, handles)
% hObject handle to triggerdelay (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of triggerdelay as text
% str2double(get(hObject,'String')) returns contents of triggerdelay as a double
setseqtiming(handles);
% ========================================================================
% --- Executes during object creation, after setting all properties.
function triggerdelay_CreateFcn(hObject, eventdata, handles)
% hObject handle to triggerdelay (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
set(hObject, 'String', '0');
% ========================================================================
function illuminatetime_Callback(hObject, eventdata, handles)
% hObject handle to illuminatetime (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of illuminatetime as text
% str2double(get(hObject,'String')) returns contents of illuminatetime as a double
setseqtiming(handles);
% ========================================================================
% --- Executes during object creation, after setting all properties.
function illuminatetime_CreateFcn(hObject, eventdata, handles)
% hObject handle to illuminatetime (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
set(hObject, 'String', '0');
% ========================================================================
function vddelay_Callback(hObject, eventdata, handles)
% hObject handle to vddelay (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of vddelay as text
% str2double(get(hObject,'String')) returns contents of vddelay as a double
setseqtiming(handles);
% ========================================================================
% --- Executes during object creation, after setting all properties.
function vddelay_CreateFcn(hObject, eventdata, handles)
% hObject handle to vddelay (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
set(hObject, 'String', '0');
% ========================================================================
function setseqtiming(handles)
device = get(handles.deviceid, 'UserData');
sequence = get(handles.sequenceid, 'UserData');
try
illuminatetime = str2double(get(handles.illuminatetime, 'String'));
picturetime = str2double(get(handles.picturetime, 'String'));
triggerdelay = str2double(get(handles.triggerdelay, 'String'));
vddelay = str2double(get(handles.vddelay, 'String'));
catch
illuminatetime = device.api.DEFAULT;
picturetime = device.api.DEFAULT;
triggerdelay = device.api.DEFAULT;
vddelay = device.api.DEFAULT;
end
triggerpulsewidth = triggerdelay + illuminatetime;
ret = sequence.timing(illuminatetime, picturetime, triggerdelay, triggerpulsewidth, vddelay);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not set sequence timing parameters of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error controlling sequence', 'modal'));
return;
end
% ========================================================================
% --- Executes on button press in set.
function set_Callback(hObject, eventdata, handles)
% hObject handle to set (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% device and sequence handle
device = get(handles.deviceid, 'UserData');
sequence = get(handles.sequenceid, 'UserData');
% binary dark phase mode
entries = get(handles.binarymode, 'UserData');
entry = entries{get(handles.binarymode, 'Value')};
ret = sequence.control(device.api.BIN_MODE, entry);
if ret == device.api.NOT_IDLE
uiwait(msgbox(sprintf('ALP device %i is not in IDLE state - abort setting parameters...', ...
device.deviceid)));
return;
elseif ret == device.api.SEQ_IN_USE
uiwait(msgbox(sprintf('Sequence %i on ALP device %i is currently running. Stop playback and retry.', ...
sequence.sequenceid, device.deviceid)));
return;
elseif ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not set binary dark phase mode of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error controlling sequence', 'modal'));
end
% data format
entries = get(handles.dataformat, 'UserData');
entry = entries{get(handles.dataformat, 'Value')};
ret = sequence.control(device.api.DATA_FORMAT, entry);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not set data format of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error controlling sequence', 'modal'));
end
% first frame
try
entry = str2double(get(handles.firstframe, 'String'));
catch
entry = 0;
end
ret = sequence.control(device.api.FIRSTFRAME, entry);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not set first frame of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error controlling sequence', 'modal'));
end
% last frame
try
entry = str2double(get(handles.lastframe, 'String'));
catch
picnum = get(handles.framecount, 'UserData');
if ~isempty(picnum)
entry = picnum;
else
entry = 1;
end
end
ret = sequence.control(device.api.LASTFRAME, entry);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not set last frame of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error controlling sequence', 'modal'));
end
% display bits
try
entry = str2double(get(handles.displaybits, 'String'));
catch
bitplanes = get(handles.bitplanes, 'UserData');
if ~isempty(picnum)
entry = bitplanes;
else
entry = 1;
end
end
ret = sequence.control(device.api.BITNUM, entry);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not set display bit depth of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error controlling sequence', 'modal'));
end
% sequence repeat
try
entry = str2double(get(handles.repetitions, 'String'));
catch
entry = 1;
end
ret = sequence.control(device.api.SEQ_REPEAT, entry);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not set sequence repetitions of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error controlling sequence', 'modal'));
end
% timing data
try
illuminatetime = str2double(get(handles.illuminatetime, 'String'));
picturetime = str2double(get(handles.picturetime, 'String'));
triggerdelay = str2double(get(handles.triggerdelay, 'String'));
vddelay = str2double(get(handles.vddelay, 'String'));
catch
illuminatetime = device.api.DEFAULT;
picturetime = device.api.DEFAULT;
triggerdelay = device.api.DEFAULT;
vddelay = device.api.DEFAULT;
end
triggerpulsewidth = triggerdelay + illuminatetime;
ret = sequence.timing(illuminatetime, picturetime, triggerdelay, triggerpulsewidth, vddelay);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not set sequence timing parameters of device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Error controlling sequence', 'modal'));
end
% ========================================================================
% --- Executes during object creation, after setting all properties.
function set_CreateFcn(hObject, eventdata, handles)
% hObject handle to set (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
set(hObject, 'Enable', 'off');
set(hObject, 'Visible', 'off');
% ========================================================================
% --- Executes on button press in startcont.
function startcont_Callback(hObject, eventdata, handles)
% hObject handle to startcont (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% device and sequence handle
device = get(handles.deviceid, 'UserData');
sequence = get(handles.sequenceid, 'UserData');
ret = device.startcont(sequence);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not play back device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Playback error', 'modal'));
end
% ========================================================================
% --- Executes on button press in start.
function start_Callback(hObject, eventdata, handles)
% hObject handle to start (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% device and sequence handle
device = get(handles.deviceid, 'UserData');
sequence = get(handles.sequenceid, 'UserData');
ret = device.start(sequence);
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not play back device/sequence %i/%i, return value was %i', ...
device.deviceid, sequence.sequenceid, ret), 'Playback error', 'modal'));
end
% ========================================================================
% --- Executes on button press in stop.
function stop_Callback(hObject, eventdata, handles)
% hObject handle to stop (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% device and sequence handle
device = get(handles.deviceid, 'UserData');
ret = device.stop();
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not stop device %i, return value was %i', ...
device.deviceid, ret), 'Stop error', 'modal'));
end
ret = device.halt();
if ret ~= device.api.OK
uiwait(msgbox(sprintf ('Can not stop device %i, return value was %i', ...
device.deviceid, ret), 'Stop error', 'modal'));
end
% ========================================================================
% --- Executes on button press in close.
function close_Callback(hObject, eventdata, handles)
% hObject handle to close (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
close(handles.alpseqtoolfigure);
% ========================================================================
% --- Executes on button press in sequencetows.
function sequencetows_Callback(hObject, eventdata, handles)
% hObject handle to sequencetows (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
sequence = get(handles.sequenceid, 'UserData');
seqvarname = sprintf('galpseq%i', sequence.sequenceid);
assignin('base', seqvarname, sequence);