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bugged collect.sh #2

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ghost opened this issue Jun 20, 2023 · 0 comments
Open

bugged collect.sh #2

ghost opened this issue Jun 20, 2023 · 0 comments

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@ghost
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ghost commented Jun 20, 2023

there is extra code in L6 and L8 which leads to errors. see image below (chm13 and grch38 should be removed)

image

example error:

[W::fai_get_val] Reference chm13 not found in FASTA file, returning empty sequence
[W::fai_get_val] Reference chm13 not found in FASTA file, returning empty sequence
[faidx] Failed to fetch sequence in chm13
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