index.md

rSubmitter - R and SLURM!

An interface between R and a SLURM cluster

rSubmitter is a package that allows simple communication between R and a SLURM cluster to achieve three main tasks:

1. Easy submission, monitoring and management of individual cluster jobs.
2. Easy and fast submission of many jobs, by implementing SLURM arrays.
3. Seamlessly lapply (loop) parallelization.

Installation

Currently you can only install rSubmitter via the R devtools package:

library("devtools")
install_github("pablo-gar/rSubmitter")

Usage

• quick-start guide

• Documention of the main rSubmitter functions online:

  • Job
  • JobArray
  • superApply

• Documention of the main rSubmitter functions from R:

library("rSubmitter")
?Job
?JobArray
?superApply