the Poisot lab

All

69 repositories

BiodiversityObservationNetworks.jl
Public
Methods for optimizing the spatial location of biodiversity-observation-networks
spatial-analysis biodiversity sampling-methods conservation-bio geobon
Julia
•
MIT License
•0•2•5•1•Updated Dec 21, 2024Dec 21, 2024
SpeciesDistributionToolkit.jl
Public
Work with species distributions in Julia
ecology biodiversity biogeography bioclim species-distribution-models chelsa earthenv
Julia
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Other
•2•16•15•5•Updated Dec 21, 2024Dec 21, 2024
SpeciesInteractionNetworks.jl
Public
Work on species interaction networks in Julia
Julia
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Other
•1•11•3•2•Updated Dec 12, 2024Dec 12, 2024
manuscript-template
Public template
TeX
•10•49•1•0•Updated Dec 6, 2024Dec 6, 2024
manuscript-typesetter
Public
This is the code that builds the manuscripts
Julia
•
MIT License
•2•0•1•0•Updated Dec 6, 2024Dec 6, 2024
website
Public
Hugo sources for the lab's website
hugo academic-website
TeX
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GNU General Public License v3.0
•8•7•0•0•Updated Nov 27, 2024Nov 27, 2024
ms_sdt_software
Public
TeX
•0•0•0•0•Updated Nov 24, 2024Nov 24, 2024
Mangal.jl
Public
Get data*. Make science*. (*: only if it's about ecological networks tho)
Julia
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MIT License
•3•9•1•0•Updated Oct 13, 2024Oct 13, 2024
SpatialBoundaries.jl
Public
https://poisotlab.github.io/SpatialBoundaries.jl/
Julia
•
MIT License
•0•2•1•0•Updated Sep 18, 2024Sep 18, 2024
ms_network_prediction
Public
Making better network predictions through ML - done right!
TeX
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Other
•2•1•1•1•Updated Sep 3, 2024Sep 3, 2024
SpatialProbabilisticMetaweb
Public
Downscaling metawebs and playing with uncertainty in space. Published in Philosophical Transactions of the Royal Society B at https://doi.org/10.1098/rstb.2023.0166
Julia
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MIT License
•0•2•0•0•Updated Aug 22, 2024Aug 22, 2024
Omnomnomivores
Public
Sadly no omnomnomivores will be featured 😔
Julia
•
MIT License
•0•0•5•1•Updated Jul 5, 2024Jul 5, 2024
ms_ncbitaxonomy_softwarenote
Public
https://poisotlab.github.io/ms_ncbitaxonomy_softwarenote/
TeX
•0•0•2•0•Updated May 31, 2024May 31, 2024
ms_womble_ya_net
Public
Check out my gravel pit, A mystery unravel'n
TeX
•0•0•1•0•Updated Apr 4, 2024Apr 4, 2024
ms_metaweb_perspectives
Public
Jupyter Notebook
•0•0•0•0•Updated Sep 19, 2023Sep 19, 2023
ms_betacov_mapping
Public
TeX
•0•1•0•0•Updated Sep 1, 2023Sep 1, 2023
EcologicalNetworks.jl
Public archive
Everything you've never dreamed about measuring on ecological networks.
networks ecology julia
Julia
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Other
•20•69•1•0•Updated Jun 23, 2023Jun 23, 2023
NCBITaxonomy.jl
Public
Wrapper around the NCBI taxonomy files
taxonomy ncbi-taxonomy biodiversity ncbi biodiversity-data ivado verena
Julia
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MIT License
•2•7•1•1•Updated Mar 5, 2023Mar 5, 2023
ms_networks_boundaries
Public
Where do networks stop?
TeX
•0•1•0•0•Updated Feb 28, 2023Feb 28, 2023
ms_networkary_classifiers
Public
Guidelines for binary classifiers applied to ecological networks
TeX
•0•0•0•0•Updated Jan 27, 2023Jan 27, 2023
EcologicalNetworksPlots.jl
Public
Networks. Boil 'em mash 'em stick 'em in a stew. And now, plot 'em.
graph-algorithms force-layout ecology force-directed-graphs ecological-network
Julia
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Other
•0•4•1•2•Updated Dec 12, 2022Dec 12, 2022
Fauxcurrences.jl
Public archive
Generates null models for species occurrence data
biodiversity occurrences species-distribution-models
Julia
•
MIT License
•0•3•2•1•Updated Dec 11, 2022Dec 11, 2022
SimpleSDMLayers.jl
Public archive
Simple layers for species distribution modeling and bioclimatic data
raster geotiff climate-change bioclim species-distribution-models landcover
Julia
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MIT License
•2•19•7•2•Updated Dec 11, 2022Dec 11, 2022
GBIF.jl
Public archive
Functions and types to access GBIF data from Julia
api ecology macroecology biogeography julia gbif
Julia
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Other
•4•19•0•1•Updated Dec 11, 2022Dec 11, 2022
SimpleSDMDatasets.jl
Public
julia raster-data biogeography species-distribution-models
Julia
•0•0•0•1•Updated Oct 30, 2022Oct 30, 2022
BioEnergeticFoodWebs.jl
Public
A unified interface for simulations of the Bio-Energetic model on food webs
ecological-models ecology population-dynamics biomass food-webs
Julia
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Other
•14•28•6•4•Updated Mar 16, 2022Mar 16, 2022
ms_metaweb_transfer
Public
Transferring networks across space through network embedding
TeX
•2•0•0•0•Updated Feb 24, 2022Feb 24, 2022
trefle
Public
LV-SVD application to Virionette
R
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Creative Commons Attribution 4.0 International
•1•0•0•0•Updated Feb 2, 2022Feb 2, 2022
MetawebTransferLearning
Public
Julia
•0•8•0•0•Updated Dec 23, 2021Dec 23, 2021
ms_betadiversity_response
Public
TeX
•0•0•0•0•Updated Dec 13, 2021Dec 13, 2021