Skip to content

@CNS-OIST Computational Neuroscience Unit, OIST

Change the repository type filter

All

    Repositories list

    21 repositories

    • STEPS

      Public
      Public release repository for STochastic Engine of Pathway Simulation (STEPS)
      C++
      •
      Other
      •11•39•2•0•Updated Dec 11, 2024Dec 11, 2024

    • STEPS4ModelRelease

      Public
      Validation and performance models for STEPS4
      Jupyter Notebook
      •0•0•1•1•Updated Nov 20, 2024Nov 20, 2024

    • STEPS_Example

      Public
      Example and tutorial scripts for STEPS simulator
      Roff
      •
      GNU General Public License v2.0
      •5•3•4•2•Updated Nov 11, 2024Nov 11, 2024

    • STEPS_Validation

      Public
      Validation Repository for STEPS
      Python
      •2•2•3•0•Updated Nov 1, 2024Nov 1, 2024

    • STEPS_Docker

      Public
      Docker image for STEPS release
      Dockerfile
      •
      Other
      •0•3•0•0•Updated Aug 19, 2024Aug 19, 2024

    • ocnc

      Public
      General software repository for OIST Computational Neuroscience Course (OCNC)
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •2•4•0•0•Updated Jun 19, 2024Jun 19, 2024

    • ocnc_steps

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 8, 2024Jun 8, 2024

    • ocnc2023brian

      Public
      Repository for OCNC2023 brian2 tutorial
      Jupyter Notebook
      •0•0•0•0•Updated Jun 23, 2023Jun 23, 2023

    • ocnc2023python

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 19, 2023Jun 19, 2023

    • ivy_np_prod

      Public
      The Unified Machine Learning Framework
      Python
      •
      Other
      •5.7k•0•0•0•Updated Feb 16, 2023Feb 16, 2023

    • NeuroDevSim

      Public
      Python
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated Oct 19, 2022Oct 19, 2022

    • pycabnn

      Public
      Python tool for constructing an anatomical basis of a neural network
      Jupyter Notebook
      •
      MIT License
      •3•2•2•0•Updated Oct 9, 2022Oct 9, 2022

    • MultiCompMesher

      Public
      Multi component mesh generator using CGAL
      C++
      •
      Other
      •0•3•0•0•Updated Jul 21, 2021Jul 21, 2021

    • STEPS_PolyhedronROI

      Public
      Create Regions of Interest (ROI) in STEPS Tetmesh object using Polyhedral surface boundaries.
      Python
      •
      Other
      •0•0•0•0•Updated Mar 11, 2021Mar 11, 2021

    • SWCTetMesher

      Public
      This program reads a SWC morphology file and generate a tetrahedral mesh using CGAL meshing functionality.
      C++
      •
      Other
      •1•1•0•0•Updated Jun 6, 2020Jun 6, 2020

    • SWCIntersectDetect

      Public
      Detect branch intersections in SWC morphology data file
      Python
      •
      Other
      •0•0•0•0•Updated May 21, 2020May 21, 2020

    • meshing

      Public
      A collection of mesh utilities for neuron morphology reconstruction
      0•2•0•0•Updated May 21, 2020May 21, 2020

    • a310_cns_2018

      Public
      Modeling class materials/homework for A310 Computational Neuroscience course at OIST
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •6•3•0•0•Updated Jan 7, 2019Jan 7, 2019

    • omega_h

      Public
      Simplex mesh adaptivity for HPC
      C++
      •
      Other
      •54•0•0•0•Updated Oct 1, 2018Oct 1, 2018

    • NeuroMaC

      Public
      NeuroMaC: simulator of the development of Neuronal Morphologies & Circuits
      Python
      •
      GNU General Public License v3.0
      •1•11•1•0•Updated Aug 29, 2017Aug 29, 2017

    • channeltune

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 16, 2016May 16, 2016