diff --git a/src/common/transformations/src/transformations/sdpa_to_paged_attention/position_ids_replacer.cpp b/src/common/transformations/src/transformations/sdpa_to_paged_attention/position_ids_replacer.cpp
index 1cc9be37606950..397746c75bb84d 100644
--- a/src/common/transformations/src/transformations/sdpa_to_paged_attention/position_ids_replacer.cpp
+++ b/src/common/transformations/src/transformations/sdpa_to_paged_attention/position_ids_replacer.cpp
@@ -61,16 +61,19 @@ ov::pass::PositionIDsReplacerQwen::PositionIDsReplacerQwen(const Output<Node>& p
     auto p_opt_convert = optional<v0::Convert>(p_max_context_len);
     auto p_opt_reshape = optional<v1::Reshape>({p_opt_convert, any_input()});
 
-    // current seg len
-    auto p_input_ids = wrap_type<v0::Parameter>();
-    auto p_unsqueeze = wrap_type<v0::Unsqueeze>({p_input_ids, _const()});
-    auto p_shape_of = wrap_type<v3::ShapeOf>({p_unsqueeze});
+    // current seq len:
+    // it might be present in 2 different ways:
+    // input_ids -> unsqueeze -> reshape -> convert -> shape_of -> gather
+    // QKV -> variadic_split(Q or K) -> rope Q/K -> shape_of -> gather
+    // Probably we can use the symbols to re-use one of these ways.
+    // Currently, "any_input" is used to detect the both places.
+    auto p_shape_of = wrap_type<v3::ShapeOf>({any_input()});
     auto p_current_len = wrap_type<v8::Gather>({p_shape_of, _const(), _const()});
 
-    auto p_rotary_emb_sincos = wrap_type<v0::Constant>();
     auto p_neg_const = wrap_type<v0::Constant>();
     auto p_neg_mul = wrap_type<v1::Multiply>({p_current_len, p_neg_const});
     // the rotary_emb_cos/rotary_emb_sin are sliced by the total length [1,..4096,1,128]
+    auto p_rotary_emb_sincos = wrap_type<v0::Constant>();
     auto p_slice_1 = wrap_type<v8::Slice>({p_rotary_emb_sincos, _const(), p_opt_reshape, _const(), _const()});
     auto p_slice_2 = wrap_type<v8::Slice>({p_slice_1, p_neg_mul, _const(), _const(), _const()});
 
diff --git a/tests/constraints.txt b/tests/constraints.txt
index 4f46cd0cc8b2e9..c339ac3c65d56f 100644
--- a/tests/constraints.txt
+++ b/tests/constraints.txt
@@ -21,11 +21,8 @@ pytest>=5.0,<8.4
 pytest-dependency==0.5.1
 pytest-html==4.1.1
 pytest-timeout==2.3.1
-jax<=0.4.36
-jaxlib<=0.4.36
 kornia==0.7.0
 networkx<=3.3
-flax<=0.10.2
 
 --extra-index-url https://download.pytorch.org/whl/cpu
 torch~=2.5.1; platform_system != "Darwin" or platform_machine != "x86_64"
diff --git a/tests/layer_tests/requirements.txt b/tests/layer_tests/requirements.txt
index 04889ebce10a39..2ba12cc5e2bece 100644
--- a/tests/layer_tests/requirements.txt
+++ b/tests/layer_tests/requirements.txt
@@ -16,5 +16,3 @@ pytest
 defusedxml
 tensorflow
 tensorflow-addons; python_version <= '3.10'
-jax; sys_platform == "linux" and platform_machine == "x86_64" # https://jax.readthedocs.io/en/latest/installation.html#pip-installation-cpu - wheels are for "x86_64" only
-jaxlib; sys_platform == "linux" and platform_machine == "x86_64" # https://jax.readthedocs.io/en/latest/installation.html#pip-installation-cpu - wheels are for "x86_64" only