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seurat_to_spatialexperiment changing name of spatialCoords #145

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RolantusdataExp opened this issue Apr 16, 2024 · 0 comments
Open

seurat_to_spatialexperiment changing name of spatialCoords #145

RolantusdataExp opened this issue Apr 16, 2024 · 0 comments
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@RolantusdataExp
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Hi devs,

I have encountered a rather small "bug":

When using the seurat_to_spatialexperiment it automatically adapts the nomenclature used in seurat - for instance the spatialCoords dataframe gets the names used in seurat (imagerow & imagecol), however it seems like functions like plot_celltype are dependent on this nomenclature: "pxl_col_in_fullres","pxl_row_in_fullres".

Best,
Peter
@RolantusdataExp RolantusdataExp added the bug Something isn't working label Apr 16, 2024
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@RolantusdataExp