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How to create an IntegratedDS1.txt file. #4

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HeewonChung92 opened this issue Jul 4, 2022 · 0 comments
Open

How to create an IntegratedDS1.txt file. #4

HeewonChung92 opened this issue Jul 4, 2022 · 0 comments

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@HeewonChung92
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HeewonChung92 commented Jul 4, 2022

Thank you for your research.
I read your paper.
It's very interesting!!!

However, I don't know the order of the code.
I wonder how you made the IntegratedDS1.txt file with which file of DS1.

image

Step 1.
vEntropy, vExclude, vRound = read_Sim_Calc_Entropy(fname='./NDD/DS1/offsideeffect_Jacarrd_sim.csv', cutoff=0.6)
Q1. What files should be included in the fname?
Q2. Is the cutoff value 0.6 correct?

Next Step 2.
removeRedundancy(ranked_entropy_simType, all_euclideanDist_Sim)

Final Step 3.
SNF(Wall, K, t, ALPHA=1)

Q3.
The order I understood is read_Sim_Calc_Entropy-> removeRedundancy -> SNF.
If I turn it around like this, will the IntegratedDS1.txt file be created?

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