diff --git a/pyproject.toml b/pyproject.toml index fb39ff3..cd54085 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -3,47 +3,47 @@ name = "oneroof" version = "0.1.0" description = "Base-, Variant-, and Consensus-calling under One Proverbial Roof. Work in progress!" authors = [ - { name = "Nicholas R. Minor", email = "nrminor@wisc.edu" }, - { name = "Andrew J. Lail", email = "ajlail@wisc.edu" }, - { name = "Annabelle Kalweit", email = "akalweit@wisc.edu" }, + { name = "Nicholas R. Minor", email = "nrminor@wisc.edu" }, + { name = "Andrew J. Lail", email = "ajlail@wisc.edu" }, + { name = "Annabelle Kalweit", email = "akalweit@wisc.edu" }, ] requires-python = ">= 3.10" keywords = [ - "science", - "biology", - "research", - "bioinformatics", - "sequencing", - "genomics", - "virus", - "SARS-CoV-2", - "H5N1", - "influenze", - "haplotyping", + "science", + "biology", + "research", + "bioinformatics", + "sequencing", + "genomics", + "virus", + "SARS-CoV-2", + "H5N1", + "influenze", + "haplotyping", ] classifiers = [ - "Development Status :: 3 - Alpha", + "Development Status :: 3 - Alpha", - "Intended Audience :: Science/Research", - "Topic :: Scientific/Engineering :: Bio-Informatics", + "Intended Audience :: Science/Research", + "Topic :: Scientific/Engineering :: Bio-Informatics", - "License :: OSI Approved :: MIT License", + "License :: OSI Approved :: MIT License", - "Programming Language :: Python :: 3", - "Programming Language :: Python :: 3.10", - "Programming Language :: Python :: 3.11", - "Programming Language :: Python :: 3.12", + "Programming Language :: Python :: 3", + "Programming Language :: Python :: 3.10", + "Programming Language :: Python :: 3.11", + "Programming Language :: Python :: 3.12", ] dependencies = [ - "polars-lts-cpu", - "xlsxwriter", - "xlsx2csv", - "biopython", - "pysam", - "marimo", - "numpy", - "scipy", - "paramiko", + "polars-lts-cpu", + "xlsxwriter", + "xlsx2csv", + "biopython", + "pysam", + "marimo", + "numpy", + "scipy", + "paramiko", ] [build-system] @@ -53,6 +53,9 @@ build-backend = "setuptools.build_meta:__legacy__" [tool.setuptools] py-modules = ["bin"] +[project.scripts] +"oneroof" = "bin.__main__:main" + [tool.pixi.project] channels = ["conda-forge", "bioconda", "anaconda"] platforms = ["osx-64", "linux-64"] @@ -90,20 +93,21 @@ cffi = ">=1.15.0,<1.17.0" [tool.uv] dev-dependencies = [ - "ipykernel>=6.29.5", - "ipython>=8.12.3", - "jupyter>=0.6.4", - "just>=0.8.162", - "mamba>=0.11.3", - "marimo[sql]>=0.8.14", - "pip>=24.2", - "pre-commit>=3.8.0", - "pytest>=8.3.3", - "quarto>=0.1.0", - "ruff>=0.6.4", - "tox>=4.18.1", + "ipykernel>=6.29.5", + "ipython>=8.12.3", + "jupyter>=0.6.4", + "just>=0.8.162", + "mamba>=0.11.3", + "marimo[sql]>=0.8.14", + "pip>=24.2", + "pre-commit>=3.8.0", + "pytest>=8.3.3", + "quarto>=0.1.0", + "ruff>=0.6.4", + "tox>=4.18.1", ] compile-bytecode = true -[project.scripts] -"oneroof" = "bin.__main__:main" +[tool.pyright] +venvPath = "." +venv = ".venv"