requirements.txt

#
# This file is autogenerated by pip-compile with Python 3.11
# by the following command:
#
#    pip-compile --extra=container --output-file=requirements.txt --strip-extras pyproject.toml
#
acres==0.2.0
    # via
    #   nibabies (pyproject.toml)
    #   nipype
    #   niworkflows
    #   smriprep
annexremote==1.6.6
    # via
    #   datalad
    #   datalad-next
    #   datalad-osf
astor==0.8.1
    # via formulaic
attrs==24.3.0
    # via
    #   jsonschema
    #   niworkflows
    #   referencing
    #   sdcflows
backports-tarfile==1.2.0
    # via jaraco-context
bids-validator==1.14.7.post0
    # via pybids
bidsschematools==1.0.0
    # via bids-validator
bokeh==3.5.2
    # via tedana
boto3==1.35.83
    # via datalad
botocore==1.35.83
    # via
    #   boto3
    #   s3transfer
certifi==2024.12.14
    # via requests
chardet==5.2.0
    # via datalad
charset-normalizer==3.4.0
    # via requests
ci-info==0.3.0
    # via
    #   etelemetry
    #   migas
click==8.1.7
    # via
    #   bidsschematools
    #   nipype
    #   pybids
contourpy==1.3.1
    # via
    #   bokeh
    #   matplotlib
cycler==0.12.1
    # via matplotlib
datalad==1.1.5
    # via
    #   datalad-next
    #   datalad-osf
    #   nibabies (pyproject.toml)
datalad-next==1.5.0
    # via datalad-osf
datalad-osf==0.3.0
    # via nibabies (pyproject.toml)
distro==1.9.0
    # via datalad
docopt==0.6.2
    # via num2words
etelemetry==0.3.1
    # via nipype
fasteners==0.19
    # via datalad
filelock==3.16.1
    # via nipype
fonttools==4.55.3
    # via matplotlib
formulaic==0.5.2
    # via pybids
fsspec==2024.10.0
    # via universal-pathlib
h5py==3.12.1
    # via nitransforms
humanize==4.11.0
    # via
    #   datalad
    #   datalad-next
idna==3.10
    # via requests
imageio==2.36.1
    # via scikit-image
importlib-metadata==8.5.0
    # via keyring
importlib-resources==6.4.5
    # via
    #   nibabel
    #   nireports
indexed-gzip==1.9.4
    # via smriprep
interface-meta==1.3.0
    # via formulaic
iso8601==2.1.0
    # via datalad
isodate==0.6.1
    # via rdflib
jaraco-classes==3.4.0
    # via
    #   keyring
    #   keyrings-alt
jaraco-context==6.0.1
    # via
    #   keyring
    #   keyrings-alt
jaraco-functools==4.1.0
    # via keyring
jinja2==3.1.4
    # via
    #   bokeh
    #   niworkflows
jmespath==1.0.1
    # via
    #   boto3
    #   botocore
joblib==1.4.2
    # via
    #   nilearn
    #   robustica
    #   scikit-learn
jsonschema==4.23.0
    # via bidsschematools
jsonschema-specifications==2024.10.1
    # via jsonschema
keyring==25.5.0
    # via datalad
keyrings-alt==5.0.2
    # via datalad
kiwisolver==1.4.7
    # via matplotlib
latexcodec==3.0.0
    # via pybtex
lazy-loader==0.4
    # via scikit-image
lockfile==0.12.2
    # via smriprep
looseversion==1.3.0
    # via
    #   datalad
    #   nipype
    #   niworkflows
    #   smriprep
lxml==5.3.0
    # via
    #   nilearn
    #   prov
    #   svgutils
mapca==0.0.5
    # via tedana
markupsafe==3.0.2
    # via jinja2
matplotlib==3.10.0
    # via
    #   nireports
    #   nitime
    #   niworkflows
    #   seaborn
    #   smriprep
    #   tedana
migas==0.4.0
    # via
    #   nibabies (pyproject.toml)
    #   sdcflows
more-itertools==10.5.0
    # via
    #   datalad-next
    #   jaraco-classes
    #   jaraco-functools
msgpack==1.1.0
    # via datalad
networkx==3.4.2
    # via
    #   nipype
    #   prov
    #   scikit-image
nibabel==5.2.1
    # via
    #   mapca
    #   nibabies (pyproject.toml)
    #   nilearn
    #   nipype
    #   nireports
    #   nitransforms
    #   niworkflows
    #   pybids
    #   sdcflows
    #   smriprep
    #   tedana
nilearn==0.10.4
    # via
    #   mapca
    #   nireports
    #   niworkflows
    #   tedana
nipype==1.9.2
    # via
    #   nibabies (pyproject.toml)
    #   nireports
    #   niworkflows
    #   sdcflows
    #   smriprep
nireports==24.0.3
    # via nibabies (pyproject.toml)
nitime==0.11
    # via nibabies (pyproject.toml)
nitransforms==24.1.1
    # via
    #   nibabies (pyproject.toml)
    #   niworkflows
    #   sdcflows
niworkflows==1.12.1
    # via
    #   nibabies (pyproject.toml)
    #   sdcflows
    #   smriprep
num2words==0.5.14
    # via pybids
numpy==2.1.1
    # via
    #   bokeh
    #   contourpy
    #   formulaic
    #   h5py
    #   imageio
    #   mapca
    #   matplotlib
    #   nibabel
    #   nibabies (pyproject.toml)
    #   nilearn
    #   nipype
    #   nireports
    #   nitime
    #   nitransforms
    #   niworkflows
    #   pandas
    #   pybids
    #   robustica
    #   scikit-image
    #   scikit-learn
    #   scipy
    #   sdcflows
    #   seaborn
    #   smriprep
    #   tedana
    #   tifffile
    #   transforms3d
osfclient==0.0.5
    # via datalad-osf
packaging==24.2
    # via
    #   bokeh
    #   datalad
    #   etelemetry
    #   lazy-loader
    #   matplotlib
    #   nibabel
    #   nibabies (pyproject.toml)
    #   nilearn
    #   nipype
    #   niworkflows
    #   pooch
    #   scikit-image
    #   smriprep
pandas==2.2.2
    # via
    #   bokeh
    #   formulaic
    #   nibabies (pyproject.toml)
    #   nilearn
    #   nireports
    #   niworkflows
    #   pybids
    #   robustica
    #   seaborn
    #   tedana
patool==3.1.0
    # via datalad
pillow==11.0.0
    # via
    #   bokeh
    #   imageio
    #   matplotlib
    #   scikit-image
platformdirs==4.3.6
    # via
    #   datalad
    #   pooch
pooch==1.8.2
    # via nibabies (pyproject.toml)
prov==2.0.1
    # via nipype
psutil==6.1.0
    # via nibabies (pyproject.toml)
puremagic==1.28
    # via nipype
pybids==0.18.1
    # via
    #   nibabies (pyproject.toml)
    #   nireports
    #   niworkflows
    #   sdcflows
    #   smriprep
    #   templateflow
pybtex==0.24.0
    # via tedana
pybtex-apa-style==1.3
    # via tedana
pydot==3.0.3
    # via nipype
pyparsing==3.2.0
    # via
    #   matplotlib
    #   pydot
    #   rdflib
python-dateutil==2.9.0.post0
    # via
    #   botocore
    #   matplotlib
    #   nipype
    #   pandas
    #   prov
python-gitlab==5.2.0
    # via datalad
pytz==2024.2
    # via pandas
pyyaml==6.0.2
    # via
    #   bidsschematools
    #   bokeh
    #   nireports
    #   niworkflows
    #   pybtex
    #   smriprep
rdflib==6.3.2
    # via
    #   nipype
    #   prov
referencing==0.35.1
    # via
    #   jsonschema
    #   jsonschema-specifications
requests==2.32.3
    # via
    #   datalad
    #   etelemetry
    #   nibabies (pyproject.toml)
    #   nilearn
    #   osfclient
    #   pooch
    #   python-gitlab
    #   requests-toolbelt
    #   templateflow
requests-toolbelt==1.0.0
    # via python-gitlab
robustica==0.1.4
    # via tedana
rpds-py==0.22.3
    # via
    #   jsonschema
    #   referencing
s3transfer==0.10.4
    # via boto3
scikit-image==0.25.0
    # via
    #   niworkflows
    #   sdcflows
scikit-learn==1.5.2
    # via
    #   mapca
    #   nilearn
    #   robustica
    #   tedana
scipy==1.14.1
    # via
    #   formulaic
    #   mapca
    #   nilearn
    #   nipype
    #   nitime
    #   nitransforms
    #   niworkflows
    #   pybids
    #   robustica
    #   scikit-image
    #   scikit-learn
    #   sdcflows
    #   tedana
sdcflows==2.10.0
    # via nibabies (pyproject.toml)
seaborn==0.13.2
    # via
    #   nireports
    #   niworkflows
simplejson==3.19.3
    # via nipype
six==1.17.0
    # via
    #   isodate
    #   osfclient
    #   pybtex
    #   python-dateutil
smriprep @ git+https://github.com/nipreps/smriprep.git@dev-nibabies
    # via nibabies (pyproject.toml)
sqlalchemy==2.0.36
    # via pybids
svgutils==0.3.4
    # via
    #   nireports
    #   niworkflows
tedana==24.0.2
    # via nibabies (pyproject.toml)
templateflow==24.2.2
    # via
    #   nibabies (pyproject.toml)
    #   nireports
    #   niworkflows
    #   sdcflows
    #   smriprep
threadpoolctl==3.5.0
    # via
    #   scikit-learn
    #   tedana
tifffile==2024.12.12
    # via scikit-image
toml==0.10.2
    # via
    #   nibabies (pyproject.toml)
    #   sdcflows
tornado==6.4.2
    # via bokeh
tqdm==4.67.1
    # via
    #   datalad
    #   osfclient
    #   robustica
    #   tedana
    #   templateflow
traits==6.3.2
    # via
    #   nipype
    #   sdcflows
transforms3d==0.4.2
    # via niworkflows
typing-extensions==4.12.2
    # via
    #   formulaic
    #   nibabel
    #   sqlalchemy
tzdata==2024.2
    # via pandas
universal-pathlib==0.2.6
    # via pybids
urllib3==2.2.3
    # via
    #   botocore
    #   requests
wrapt==1.17.0
    # via formulaic
xyzservices==2024.9.0
    # via bokeh
zipp==3.21.0
    # via importlib-metadata