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title marp theme paginate license date author
DataHUB concepts and terminology
true
marp-theme_dataplant-ceplas-mibinet-ccby
true
2023-12-05
name orcid github
Dominik Brilhaus
brilator

DataHUB concepts and terminology

Where do I store my ARC?

ARC storage and sharing

w:600

  • DataHUB as "ground truth" / original clone
  • You can sync and communicate all changes to your ARC via the DataHUB

💡 ARCitect and ARC commander provide options to avoid syncing large files (LFS = Large file storage)

Example setup to store and use ARCs

Personal computer

  • work on small files
  • annotate metadata
  • add scripts, protocols

Workstation / Server

  • work on large files
  • run computations

FileShare

  • mount to local machine, sync ARC from there

HPC

  • direct connection HPC to DataHUB (depends on security settings)
  • or mount to local machine and sync, ARC from there

Projects and Groups are not the same

  • "Project" = ARC
  • "Groups" = Group of users

Project = ARC

  • In the DataHUB, ARCs are called "projects"; they are the same.
  • An ARC can be shared with individual users (invited as "members") or a group.

DataHUB Groups

  • A "Group" is a group of users with specific permissions
  • A group can share ARCs
  • A group can be invited to an ARC
  • Groups can have subgroups

Options to share an ARC via the DataHUB

Namespaces

  • Every user has a personal namespace, where they can upload or create new ARCs
  • Every group and subgroup has its own namespace
Type  URL Namespace Name
A personal ARC https://git.nfdi4plants.org/brilator/Facultative-CAM-in-Talinum brilator Dominik Brilhaus
An group-shared ARC https://git.nfdi4plants.org/hhu-plant-biochemistry/Samuilov-2018-BOU-PSP  hhu-plant-biochemistry HHU Plant Biochemistry

💡 Personal is not the same as private

Visibility

The visibility of ARCs and groups can be managed individually for each ARC or group

💡 By default every ARC and every group is set to private.

Permissions & Roles

When inviting new members to an ARC or group, you can choose between different levels.

💡 By default you are Owner of an ARC you create or upload to the DataHUB.

ARC DataHUB members // ARC Investigation contacts

💡 Investigation contacts are not automatically invited as members to the ARC.