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I want to download a remote file behind a proxy with authentication, but the authentication part in http(s)_proxy variables seem to not be interpreted.
Steps to reproduce the problem
main.nf:
process test {
input:
path cute_file
script:
"""
ls $cute_file >result_ls
"""
}
workflow {
cute_file = file("https://files.rcsb.org/header/5FID.pdb")
test(
cute_file
)
}
nextflow main.nf
Program output
WARN: Unable to stage foreign file: https://files.rcsb.org/header/5FID.pdb (try 1 of 3) -- Cause: Unable to access path: https://files.rcsb.org/header/5FID.pdb
WARN: Unable to stage foreign file: https://files.rcsb.org/header/5FID.pdb (try 2 of 3) -- Cause: Unable to access path: https://files.rcsb.org/header/5FID.pdb
WARN: Unable to stage foreign file: https://files.rcsb.org/header/5FID.pdb (try 3 of 3) -- Cause: Unable to access path: https://files.rcsb.org/header/5FID.pdb
ERROR ~ Error executing process > 'test'
Caused by:
Can't stage file https://files.rcsb.org/header/5FID.pdb -- reason: Unable to access path: https://files.rcsb.org/header/5FID.pdb
Bug report
Expected behavior and actual behavior
I want to download a remote file behind a proxy with authentication, but the authentication part in http(s)_proxy variables seem to not be interpreted.
Steps to reproduce the problem
main.nf:
nextflow main.nf
Program output
nextflow.log
Environment
Additional context
On the proxy side, it always returns http code : 407 Proxy Authentication Required
The variable NO_PROXY also seems to not be interpreted by nextflow.
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