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Probabilistic Inference of Short-term Synaptic Plasticity - inference code
Paper: https://doi.org/10.3389/fncom.2013.00075 (Costa et al. 2013)


Model: Tsodyks-Markram (2-4 parameters)
Version: v0.1 (06/2013)
Author: Rui Ponte Costa ([email protected])


How to install:

1 - Install Matlab (with Statistical Toolbox).
2 - Open Matlab > Go to STPInference folder

How to run:

1 - Type TM_GUI in the command line
2 - Open a XLS file (example given in data/examplePCPC.xls) Options: Age, frequency and minimum number of pulses.
3 - Press Run (should take approximately one minute per datapoint)
4 - The maximum a posterior (MAP) solutions are given in the main window and the respective coefficient of determination (R^2). This is a subset of the information in the paper's Fig. 4b and Fig. 6a, only for one of the connection types (PC-PC) and a subset of the datapoints (n=3):

screenshot

screenshot


5 - Finally, the plots (posterior and MAP solutions) can be saved in PDF format

Problems: