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Hi @leexgh - these are integrated h5ad files for which we are releasing under OtherAssay with the understanding that upstream CODEX level 2&3 data remains unreleased (I don't see codex_level2 and codex_level3 for HTA1_213_6752 on the portal, nor any CSVs for codex. Can you let me know where you're seeing these?)
As the integrated data files are annotated under the minimal template, only HTAN Parent Biospecimen ID is provided. We can use this as the link to biospecimen/clinical data.
MBC metadata is not correct, especially for cvs files.
E.g. Looking at the codex data, in htan portal for
HTA1_213_6752303
, the data file id is HTA1_213_6752303111.https://humantumoratlas.org/explore?selectedFilters=%5B%7B%22group%22%3A%22AtlasName%22%2C%22value%22%3A%22HTAN+HTAPP%22%7D%2C%7B%22value%22%3A%22CODEX%22%2C%22group%22%3A%22assayName%22%2C%22count%22%3A13%2C%22isSelected%22%3Afalse%7D%5D&tab=file#
But for
HTA1_213_6752
there are codex_level2 and codex_level3 available, the parent Id should not point to biospecimen idThe text was updated successfully, but these errors were encountered: