From 1702100ab3f8dcb4843ab9da184612b372ec1854 Mon Sep 17 00:00:00 2001 From: Doug Newman Date: Mon, 21 Aug 2023 14:15:34 -0400 Subject: [PATCH 1/9] Issue 19 Use preferred CMR-Search-After method for iterating through results (#22) * Added vcr tests * Added uniquess test * More comments * Updated dependencies * Refatored fixture location * Remove DSStore files * Remove ds store files * Removed CMR-Search-After header once get method completes * Removed unnecessary reference to requests_mock --------- Co-authored-by: Doug Newman --- .DS_Store | Bin 0 -> 6148 bytes .gitignore | 3 +- cmr/queries.py | 26 +- poetry.lock | 367 +- pyproject.toml | 1 + tests/fixtures/.DS_Store | Bin 0 -> 8196 bytes tests/fixtures/vcr_cassettes/CYGNSS.yaml | 20399 ++++++++++++++++ tests/fixtures/vcr_cassettes/MOD02QKM.yaml | 18136 ++++++++++++++ .../fixtures/vcr_cassettes/MOD02QKM_2000.yaml | 12068 +++++++++ tests/fixtures/vcr_cassettes/TELLUS_GRAC.yaml | 2088 ++ tests/test_multiple_queries.py | 95 + 11 files changed, 53164 insertions(+), 19 deletions(-) create mode 100644 .DS_Store create mode 100644 tests/fixtures/.DS_Store create mode 100644 tests/fixtures/vcr_cassettes/CYGNSS.yaml create mode 100644 tests/fixtures/vcr_cassettes/MOD02QKM.yaml create mode 100644 tests/fixtures/vcr_cassettes/MOD02QKM_2000.yaml create mode 100644 tests/fixtures/vcr_cassettes/TELLUS_GRAC.yaml create mode 100644 tests/test_multiple_queries.py diff --git a/.DS_Store b/.DS_Store new file mode 100644 index 0000000000000000000000000000000000000000..cada8c39c7a09595857773e89083418cee984413 GIT binary patch literal 6148 zcmeHK%}T>S5Z<+|-BN@e6vWel*Md!Jd+`!#eE}nSP^k$i8jRV}r1nq>c>sMOAH?Tz zW_JTE29F|k26n&M`Pt2Uko{qd@!>pl7;7=c1T;jBN{OJk)U{)S5xJft4HoG%h*eNB z&EGWPx7S$4CM<=1{rf+HX&j|lr}N2oD%ILa7DhygsA9iiiR_z9kT)Mb~0(5Ii8< zqym~$Zl4(3q=Q}BIM-rs(4;f2SB81)%EjY_>(#+7bvWa$LF$PCVqlYjiW#=>{J(%- zru31&nL;CCfEf5^4Djm68x5f-d$xWn56@Z&?ExAJ#^tDhfWC1FfC26!huUfU5_O1k XE#?Ms7PRYhK)MKMLZ~AKeu056dKF87 literal 0 HcmV?d00001 diff --git a/.gitignore b/.gitignore index d9b5c9d..6aeee23 100644 --- a/.gitignore +++ b/.gitignore @@ -4,4 +4,5 @@ venv/ tags .venv *.egg-info -dist \ No newline at end of file +dist +.vscode/* \ No newline at end of file diff --git a/cmr/queries.py b/cmr/queries.py index 04412ad..e23696c 100644 --- a/cmr/queries.py +++ b/cmr/queries.py @@ -51,10 +51,15 @@ def get(self, limit=2000): url = self._build_url() results = [] - page = 1 - while len(results) < limit: + more_results = True + while more_results == True: - response = get(url, headers=self.headers, params={'page_size': page_size, 'page_num': page}) + # Only get what we need + page_size = min(limit - len(results), page_size) + response = get(url, headers=self.headers, params={'page_size': page_size}) + if self.headers == None: + self.headers = {} + self.headers['cmr-search-after'] = response.headers['cmr-search-after'] try: response.raise_for_status() @@ -65,13 +70,16 @@ def get(self, limit=2000): latest = response.json()['feed']['entry'] else: latest = [response.text] - - if len(latest) == 0: - break - + results.extend(latest) - page += 1 - + + if page_size > len(response.json()['feed']['entry']) or len(results) >= limit: + more_results = False + + # This header is transient. 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+ headers: + Access-Control-Allow-Origin: + - '*' + Access-Control-Expose-Headers: + - CMR-Hits, CMR-Request-Id, X-Request-Id, CMR-Scroll-Id, CMR-Search-After, CMR-Timed-Out, + CMR-Shapefile-Original-Point-Count, CMR-Shapefile-Simplified-Point-Count + CMR-Hits: + - '163' + CMR-Request-Id: + - 60eb29b2-95e1-453c-8efe-6e59cf649eb5 + CMR-Search-After: + - '["pocloud",1495497600000,2658328520]' + CMR-Took: + - '4959' + Connection: + - keep-alive + Content-Type: + - application/json;charset=utf-8 + Date: + - Mon, 14 Aug 2023 17:02:42 GMT + Server: + - ServerTokens ProductOnly + Strict-Transport-Security: + - max-age=31536000 + Transfer-Encoding: + - chunked + Vary: + - Accept-Encoding, User-Agent + Via: + - 1.1 44933b72098305e9c31fc50b2e6554a0.cloudfront.net (CloudFront) + X-Amz-Cf-Id: + - 9TJ3JRMGc6mUxKegR4f2HSLC_1Cfwei5QHZuicg_aLsWEJS3T6XCNg== + X-Amz-Cf-Pop: + - SFO53-C1 + X-Cache: + - Miss from cloudfront + X-Content-Type-Options: + - nosniff + X-Frame-Options: + - SAMEORIGIN + X-Request-Id: + - 9TJ3JRMGc6mUxKegR4f2HSLC_1Cfwei5QHZuicg_aLsWEJS3T6XCNg== + X-XSS-Protection: + - 1; mode=block + content-length: + - '726816' + status: + code: 200 + message: OK +version: 1 diff --git a/tests/test_multiple_queries.py b/tests/test_multiple_queries.py new file mode 100644 index 0000000..5022d40 --- /dev/null +++ b/tests/test_multiple_queries.py @@ -0,0 +1,95 @@ +import unittest +import json + +import vcr +import urllib.request + +from cmr.queries import GranuleQuery + +my_vcr = vcr.VCR( + record_mode='once', + decode_compressed_response=True, + # Header matching is not set by default, we need that to test the + # search-after functionality is performing correctly. + match_on=['method', 'scheme', 'host', 'port', 'path', 'query', 'headers'] +) + +def assert_unique_granules_from_results(granules): + """ + When we invoke a search request multiple times we want to ensure that we don't + get the same results back. This is a one shot test as the results are preserved + by VCR but still useful. + """ + granule_ids = [] + for granule in granules: + granule_ids.append(granule['title']) + + unique_granules = set(granule_ids) + return len(unique_granules) == len(granule_ids) + +class TestMultipleQueries(unittest.TestCase): + + def test_get_more_than_2000(self): + """ + If we execute a get with a limit of more than 2000 + then we expect multiple invocations of a cmr granule search and + to not fetch back more results than we ask for + """ + with my_vcr.use_cassette('tests/fixtures/vcr_cassettes/MOD02QKM.yaml') as cass: + api = GranuleQuery() + + granules = api.short_name("MOD02QKM").get(3000) + self.assertEqual(len(granules), 3000) + # Assert all 3000 qranule results have unique granule ids + assert_unique_granules_from_results(granules) + # Assert that we performed two search results queries + self.assertEqual(len(cass), 2) + self.assertIsNone(api.headers.get('cmr-search-after')) + + def test_get(self): + """ + If we execute a get with no arguments then we expect + to get the maximum no. of granules from a single CMR call (2000) + in a single request + """ + with my_vcr.use_cassette('tests/fixtures/vcr_cassettes/MOD02QKM_2000.yaml') as cass: + api = GranuleQuery() + granules = api.short_name("MOD02QKM").get() + self.assertEqual(len(granules), 2000) + # Assert all 2000 qranule results have unique granule ids + assert_unique_granules_from_results(granules) + # Assert that we performed one search results query + self.assertEqual(len(cass), 1) + self.assertIsNone(api.headers.get('cmr-search-after')) + + def test_get_all_less_than_2k(self): + """ + If we execute a get_all then we expect multiple + invocations of a cmr granule search and + to not fetch back more results than we ask for + """ + with my_vcr.use_cassette('tests/fixtures/vcr_cassettes/TELLUS_GRAC.yaml') as cass: + api = GranuleQuery() + granules = api.short_name("TELLUS_GRAC_L3_JPL_RL06_LND_v04").get_all() + self.assertEqual(len(granules), 163) + # Assert all 163 qranule results have unique granule ids + assert_unique_granules_from_results(granules) + # Assert that we performed a hits query and one search results query + self.assertEqual(len(cass), 2) + self.assertIsNone(api.headers.get('cmr-search-after')) + + def test_get_all_more_than_2k(self): + """ + If we execute a get_all then we expect multiple + invocations of a cmr granule search and + to not fetch back more results than we ask for + """ + with my_vcr.use_cassette('tests/fixtures/vcr_cassettes/CYGNSS.yaml') as cass: + api = GranuleQuery() + granules = api.short_name("CYGNSS_NOAA_L2_SWSP_25KM_V1.2").get_all() + self.assertEqual(len(granules), 2285) + # Assert all 2285 qranule results have unique granule ids + assert_unique_granules_from_results(granules) + # Assert that we performed a hits query and two search results queries + self.assertEqual(len(cass), 3) + self.assertIsNone(api.headers.get('cmr-search-after')) \ No newline at end of file From 22b8d01d1c67bc3646f4a97b511c532361f89a08 Mon Sep 17 00:00:00 2001 From: Tyler Anderson <54593691+tyler-c2s@users.noreply.github.com> Date: Wed, 10 Apr 2024 13:58:10 -0400 Subject: [PATCH 2/9] add readable_granule_name option to GranuleQuery (#27) * add readable_granule_name to GranuleQuery * add readable_granule_name to tests * Update CHANGELOG.md * Update README.md * Update CHANGELOG.md --------- Co-authored-by: Frank Greguska <89428916+frankinspace@users.noreply.github.com> --- CHANGELOG.md | 4 ++++ README.md | 2 ++ cmr/queries.py | 23 ++++++++++++++++++++++- tests/test_granule.py | 16 ++++++++++++++++ 4 files changed, 44 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 8c5a58a..b9f36f4 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -6,6 +6,10 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). ## [Unreleased] +### Added +- [pull/27](https://github.com/nasa/python_cmr/pull/27) New feature to search by `readable_granlue_name` https://cmr.earthdata.nasa.gov/search/site/docs/search/api.html#g-granule-ur-or-producer-granule-id +### Fixed +- [pull/27](https://github.com/nasa/python_cmr/pull/27) Fixed bug with constructing the `options` sent to CMR which was causing filters to not get applied correctly. ## [0.9.0] ### Added diff --git a/README.md b/README.md index 1b94645..202cf57 100644 --- a/README.md +++ b/README.md @@ -110,6 +110,8 @@ Granule searches support these methods (in addition to the shared methods above) >>> api.granule_ur("SC:AST_L1T.003:2150315169") # search for granules from a specific orbit >>> api.orbit_number(5000) + # search for a granule by name + >>> api.short_name("MOD09GA").readable_granule_name(["*h32v08*","*h30v13*"]) # filter by the day/night flag >>> api.day_night_flag("day") diff --git a/cmr/queries.py b/cmr/queries.py index e23696c..790b9a1 100644 --- a/cmr/queries.py +++ b/cmr/queries.py @@ -203,7 +203,7 @@ def _build_url(self): formatted_options.append("options[{}][{}]={}".format( param_key, option_key, - val + str(val).lower() )) options_as_string = "&".join(formatted_options) @@ -741,6 +741,27 @@ def granule_ur(self, granule_ur=""): self.params['granule_ur'] = granule_ur return self + + def readable_granule_name(self, readable_granule_name=""): + """ + Filter by the readable granule name (producer_granule_id if present, otherwise producer_granule_id). + + Can use wildcards for substring matching: + + asterisk (*) will match any number of characters. + question mark (?) will match exactly one character. + + :param readable_granule_name: granule name or substring + :returns: Query instance + """ + + if isinstance(readable_granule_name, str): + readable_granule_name = [readable_granule_name] + + self.params["readable_granule_name"] = readable_granule_name + self.options["readable_granule_name"] = {"pattern": True} + + return self def _valid_state(self): diff --git a/tests/test_granule.py b/tests/test_granule.py index 3b5b380..2a1e88b 100644 --- a/tests/test_granule.py +++ b/tests/test_granule.py @@ -22,6 +22,7 @@ class TestGranuleClass(unittest.TestCase): instrument = "instrument" platform = "platform" granule_ur = "granule_ur" + readable_granule_name = "readable_granule_name" sort_key="sort_key" @@ -448,6 +449,11 @@ def test_lowercase_bool_url(self): self.assertNotIn("True", url) self.assertNotIn("False", url) + # ensure True is not found with parameters that add to options + query.parameters(readable_granule_name="A") + url = query._build_url() + self.assertNotIn("True", url) + def test_valid_concept_id(self): query = GranuleQuery() @@ -472,3 +478,13 @@ def bearer_test_token(self): self.assertIn("Authorization", query.headers) self.assertEqual(query.headers["Authorization"], "Bearer 123TOKEN") + def test_readable_granule_name(self): + query = GranuleQuery() + + query.readable_granule_name("*a*") + self.assertEqual(query.params[self.readable_granule_name], ["*a*"]) + self.assertIn("pattern", query.options["readable_granule_name"]) + self.assertEqual(query.options["readable_granule_name"]["pattern"], True) + + query.readable_granule_name(["*a*", "*b*"]) + self.assertEqual(query.params[self.readable_granule_name], ["*a*", "*b*"]) \ No newline at end of file From a826830f8296a392aec901cdbe9becd95497a045 Mon Sep 17 00:00:00 2001 From: Frank Greguska <89428916+frankinspace@users.noreply.github.com> Date: Wed, 10 Apr 2024 11:00:54 -0700 Subject: [PATCH 3/9] /version 0.9.0-a1 --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 8e29b2d..929019e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "python-cmr" -version = "0.9.0-a0" +version = "0.9.0-a1" description = "Python wrapper to the NASA Common Metadata Repository (CMR) API." authors = ["python_cmr "] license = "MIT" From 755a91ea1cad054f5a732de09113b5699c68a95a Mon Sep 17 00:00:00 2001 From: Tyler Anderson <54593691+tyler-c2s@users.noreply.github.com> Date: Wed, 10 Apr 2024 14:07:19 -0400 Subject: [PATCH 4/9] Fix cmr search after key error (#28) * fix cmr-search-after key error * add tests * Update CHANGELOG.md --------- Co-authored-by: Frank Greguska <89428916+frankinspace@users.noreply.github.com> --- CHANGELOG.md | 1 + cmr/queries.py | 2 +- .../vcr_cassettes/MOD09GA061_nohits.yaml | 66 +++++++++++++++++++ tests/test_multiple_queries.py | 18 +++++ 4 files changed, 86 insertions(+), 1 deletion(-) create mode 100644 tests/fixtures/vcr_cassettes/MOD09GA061_nohits.yaml diff --git a/CHANGELOG.md b/CHANGELOG.md index b9f36f4..de86f6e 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -10,6 +10,7 @@ to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). - [pull/27](https://github.com/nasa/python_cmr/pull/27) New feature to search by `readable_granlue_name` https://cmr.earthdata.nasa.gov/search/site/docs/search/api.html#g-granule-ur-or-producer-granule-id ### Fixed - [pull/27](https://github.com/nasa/python_cmr/pull/27) Fixed bug with constructing the `options` sent to CMR which was causing filters to not get applied correctly. +- [pull/28](https://github.com/nasa/python_cmr/pull/28) Fixed bug where `KeyError` was thrown if search result contained 0 hits ## [0.9.0] ### Added diff --git a/cmr/queries.py b/cmr/queries.py index 790b9a1..e129470 100644 --- a/cmr/queries.py +++ b/cmr/queries.py @@ -59,7 +59,7 @@ def get(self, limit=2000): response = get(url, headers=self.headers, params={'page_size': page_size}) if self.headers == None: self.headers = {} - self.headers['cmr-search-after'] = response.headers['cmr-search-after'] + self.headers['cmr-search-after'] = response.headers.get('cmr-search-after') try: response.raise_for_status() diff --git a/tests/fixtures/vcr_cassettes/MOD09GA061_nohits.yaml b/tests/fixtures/vcr_cassettes/MOD09GA061_nohits.yaml new file mode 100644 index 0000000..4ebbbe9 --- /dev/null +++ b/tests/fixtures/vcr_cassettes/MOD09GA061_nohits.yaml @@ -0,0 +1,66 @@ +interactions: +- request: + body: null + headers: + Accept: + - '*/*' + Accept-Encoding: + - gzip, deflate + Connection: + - keep-alive + User-Agent: + - python-requests/2.31.0 + method: GET + uri: https://cmr.earthdata.nasa.gov/search/granules.json?short_name=MOD09GA&version=061&temporal%5B%5D=1990-01-01T00:00:00Z,1990-01-02T00:00:00Z&page_size=2000 + response: + body: + string: '{"feed":{"updated":"2024-03-19T01:45:43.818Z","id":"https://cmr.earthdata.nasa.gov:443/search/granules.json?short_name=MOD09GA&version=061&temporal%5B%5D=1990-01-01T00:00:00Z,1990-01-02T00:00:00Z&page_size=2000","title":"ECHO + granule metadata","entry":[]}}' + headers: + Access-Control-Allow-Origin: + - '*' + Access-Control-Expose-Headers: + - CMR-Hits, CMR-Request-Id, X-Request-Id, CMR-Scroll-Id, CMR-Search-After, CMR-Timed-Out, + CMR-Shapefile-Original-Point-Count, CMR-Shapefile-Simplified-Point-Count + CMR-Hits: + - '0' + CMR-Request-Id: + - 211cef0c-67e7-4233-86c4-716bb79ae77d + CMR-Took: + - '17' + Connection: + - keep-alive + Content-Type: + - application/json;charset=utf-8 + Date: + - Tue, 19 Mar 2024 01:45:43 GMT + Server: + - ServerTokens ProductOnly + Strict-Transport-Security: + - max-age=31536000; includeSubDomains; preload + Transfer-Encoding: + - chunked + Vary: + - Accept-Encoding, User-Agent + Via: + - 1.1 c8c9787916110356915bbdbddd0a32d6.cloudfront.net (CloudFront) + X-Amz-Cf-Id: + - B1Ro_QV_1jxT6j_JD9v_vH0uJaxzpwS1-wYiLga59S08cpmZuuNNXQ== + X-Amz-Cf-Pop: + - IAD89-C2 + X-Cache: + - Miss from cloudfront + X-Content-Type-Options: + - nosniff + X-Frame-Options: + - SAMEORIGIN + X-Request-Id: + - B1Ro_QV_1jxT6j_JD9v_vH0uJaxzpwS1-wYiLga59S08cpmZuuNNXQ== + X-XSS-Protection: + - 1; mode=block + content-length: + - '256' + status: + code: 200 + message: OK +version: 1 diff --git a/tests/test_multiple_queries.py b/tests/test_multiple_queries.py index 5022d40..f9cc479 100644 --- a/tests/test_multiple_queries.py +++ b/tests/test_multiple_queries.py @@ -1,5 +1,6 @@ import unittest import json +from datetime import datetime import vcr import urllib.request @@ -92,4 +93,21 @@ def test_get_all_more_than_2k(self): assert_unique_granules_from_results(granules) # Assert that we performed a hits query and two search results queries self.assertEqual(len(cass), 3) + self.assertIsNone(api.headers.get('cmr-search-after')) + + def test_zero_hits_query(self): + """ + If we execute a get that has zero + hits, cmr-search-after is not sent in + the response headers + """ + with my_vcr.use_cassette('tests/fixtures/vcr_cassettes/MOD09GA061_nohits.yaml') as cass: + api = GranuleQuery() + granules = ( + api.short_name("MOD09GA") + .version("061") + .temporal(datetime(1990,1,1),datetime(1990,1,2)) + .get() + ) + self.assertEqual(len(granules), 0) self.assertIsNone(api.headers.get('cmr-search-after')) \ No newline at end of file From d88120b2c99af9de54cb3b31e7593c5fa2e48dae Mon Sep 17 00:00:00 2001 From: Ian Carroll Date: Wed, 10 Apr 2024 14:11:59 -0400 Subject: [PATCH 5/9] allow more flexible date handling (#30) * housekeeping * more flexible date handling * Update CHANGELOG.md --------- Co-authored-by: Frank Greguska <89428916+frankinspace@users.noreply.github.com> --- .DS_Store | Bin 6148 -> 0 bytes .gitignore | 3 ++- CHANGELOG.md | 2 ++ cmr/queries.py | 39 +++++++++++++++++++++------------- poetry.lock | 48 ++++++++++++++++++++++++------------------ pyproject.toml | 1 + tests/test_granule.py | 41 ++++++++++++++++++++++++++++++------ 7 files changed, 91 insertions(+), 43 deletions(-) delete mode 100644 .DS_Store diff --git a/.DS_Store b/.DS_Store deleted file mode 100644 index cada8c39c7a09595857773e89083418cee984413..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 6148 zcmeHK%}T>S5Z<+|-BN@e6vWel*Md!Jd+`!#eE}nSP^k$i8jRV}r1nq>c>sMOAH?Tz zW_JTE29F|k26n&M`Pt2Uko{qd@!>pl7;7=c1T;jBN{OJk)U{)S5xJft4HoG%h*eNB z&EGWPx7S$4CM<=1{rf+HX&j|lr}N2oD%ILa7DhygsA9iiiR_z9kT)Mb~0(5Ii8< zqym~$Zl4(3q=Q}BIM-rs(4;f2SB81)%EjY_>(#+7bvWa$LF$PCVqlYjiW#=>{J(%- zru31&nL;CCfEf5^4Djm68x5f-d$xWn56@Z&?ExAJ#^tDhfWC1FfC26!huUfU5_O1k XE#?Ms7PRYhK)MKMLZ~AKeu056dKF87 diff --git a/.gitignore b/.gitignore index 6aeee23..2b3ea9b 100644 --- a/.gitignore +++ b/.gitignore @@ -5,4 +5,5 @@ tags .venv *.egg-info dist -.vscode/* \ No newline at end of file +.vscode/* +.DS_Store diff --git a/CHANGELOG.md b/CHANGELOG.md index de86f6e..614a7e3 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -6,6 +6,8 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). ## [Unreleased] +### Changed +- [issues/29](https://github.com/nasa/python_cmr/issues/29) - Date parsing has been improved to accept more ISO-8601 string formats as well as timezone-aware datetime objects ### Added - [pull/27](https://github.com/nasa/python_cmr/pull/27) New feature to search by `readable_granlue_name` https://cmr.earthdata.nasa.gov/search/site/docs/search/api.html#g-granule-ur-or-producer-granule-id ### Fixed diff --git a/cmr/queries.py b/cmr/queries.py index e129470..ce5cbff 100644 --- a/cmr/queries.py +++ b/cmr/queries.py @@ -7,11 +7,12 @@ except ImportError: from urllib import pathname2url as quote -from datetime import datetime +from datetime import datetime, timezone from inspect import getmembers, ismethod from re import search from requests import get, exceptions +from dateutil.parser import parse as dateutil_parse CMR_OPS = "https://cmr.earthdata.nasa.gov/search/" CMR_UAT = "https://cmr.uat.earthdata.nasa.gov/search/" @@ -340,7 +341,7 @@ def temporal(self, date_from, date_to, exclude_boundary=False): """ Filter by an open or closed date range. - Dates can be provided as a datetime objects or ISO 8601 formatted strings. Multiple + Dates can be provided as native date objects or ISO 8601 formatted strings. Multiple ranges can be provided by successive calls to this method before calling execute(). :param date_from: earliest date of temporal range @@ -352,7 +353,7 @@ def temporal(self, date_from, date_to, exclude_boundary=False): iso_8601 = "%Y-%m-%dT%H:%M:%SZ" # process each date into a datetime object - def convert_to_string(date): + def convert_to_string(date, default): """ Returns the argument as an ISO 8601 or empty string. """ @@ -360,21 +361,29 @@ def convert_to_string(date): if not date: return "" - try: - # see if it's datetime-like - return date.strftime(iso_8601) - except AttributeError: + # handle str, date-like objects without time, and datetime objects + if isinstance(date, str): + # handle string by parsing with default + date = dateutil_parse(date, default=default) + elif not isinstance(date, datetime): + # handle (naive by definition) date by converting to utc datetime try: - # maybe it already is an ISO 8601 string - datetime.strptime(date, iso_8601) - return date + date = datetime.combine(date, default.time()) except TypeError: - raise ValueError( - "Please provide None, datetime objects, or ISO 8601 formatted strings." - ) + msg = f"Date must be a date object or ISO 8601 string, not {date.__class__.__name__}." + raise TypeError(msg) + date = date.replace(tzinfo=timezone.utc) + else: + # pass aware datetime and handle naive datetime by assuming utc + date = date if date.tzinfo else date.replace(tzinfo=timezone.utc) + + # convert aware datetime to utc datetime + date = date.astimezone(timezone.utc) + + return date.strftime(iso_8601) - date_from = convert_to_string(date_from) - date_to = convert_to_string(date_to) + date_from = convert_to_string(date_from, datetime(1, 1, 1, 0, 0, 0, tzinfo=timezone.utc)) + date_to = convert_to_string(date_to, datetime(1, 12, 31, 23, 59, 59, tzinfo=timezone.utc)) # if we have both dates, make sure from isn't later than to if date_from and date_to: diff --git a/poetry.lock b/poetry.lock index 6c91e6c..7ca381e 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. 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"sha256:f7fae383f228633f6bececebdab236c478ace2284d6292c6e7e2867b9ab74d15"}, -] - -[package.dependencies] -requests = ">=2.3,<3" -six = "*" - -[package.extras] -fixture = ["fixtures"] -test = ["fixtures", "mock", "purl", "pytest", "requests-futures", "sphinx", "testtools"] - [[package]] name = "six" version = "1.16.0" @@ -667,4 +673,4 @@ multidict = ">=4.0" [metadata] lock-version = "2.0" python-versions = "^3.8" -content-hash = "0c8d442593a5b983bfea705eb0f0eda1dffa06a48c4437f98f7b5d7993cdf7e3" +content-hash = "a38e12e947343835044c76409500276145b931a36d08b8328a3ad4e4180c341c" diff --git a/pyproject.toml b/pyproject.toml index 929019e..5f2a90c 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -14,6 +14,7 @@ packages = [{ include = "cmr" }] [tool.poetry.dependencies] python = "^3.8" requests = "^2.26.0" +python-dateutil = "^2.8.2" [tool.poetry.dev-dependencies] flake8 = "^4.0.1" diff --git a/tests/test_granule.py b/tests/test_granule.py index 2a1e88b..5a08310 100644 --- a/tests/test_granule.py +++ b/tests/test_granule.py @@ -1,5 +1,5 @@ import unittest -from datetime import datetime +from datetime import datetime, timezone, timedelta from cmr.queries import GranuleQuery @@ -67,15 +67,16 @@ def test_temporal_invalid_strings(self): query = GranuleQuery() with self.assertRaises(ValueError): - query.temporal("2016", "2016-10-20T01:02:03Z") - query.temporal("2016-10-20T01:02:03Z", "2016") + query.temporal("abc", "2016-10-20T01:02:03Z") + + with self.assertRaises(ValueError): + query.temporal("2016-10-20T01:02:03Z", "abc") def test_temporal_invalid_types(self): query = GranuleQuery() - with self.assertRaises(ValueError): - query.temporal(1, 2) - query.temporal(None, None) + with self.assertRaises(TypeError): + query.temporal(1, None) def test_temporal_invalid_date_order(self): query = GranuleQuery() @@ -83,6 +84,34 @@ def test_temporal_invalid_date_order(self): with self.assertRaises(ValueError): query.temporal(datetime(2016, 10, 12, 10, 55, 7), datetime(2016, 10, 12, 9)) + def test_temporal_rounding(self): + query = GranuleQuery() + + # one whole year + query.temporal("2016", "2016") + self.assertIn("temporal", query.params) + self.assertEqual(query.params["temporal"][0], "2016-01-01T00:00:00Z,2016-12-31T23:59:59Z") + + # one whole month + query.temporal("2016-10", "2016-10") + self.assertEqual(query.params["temporal"][1], "2016-10-01T00:00:00Z,2016-10-31T23:59:59Z") + + # one whole day, wrong way + query.temporal("2016-10-10", datetime(2016, 10, 10)) + self.assertNotEqual(query.params["temporal"][2], "2016-10-10T00:00:00Z,2016-10-10T23:59:59Z") + + # one whole day, right way + query.temporal("2016-10-10", datetime(2016, 10, 10).date()) + self.assertEqual(query.params["temporal"][3], "2016-10-10T00:00:00Z,2016-10-10T23:59:59Z") + + def test_temporal_tz_aware(self): + query = GranuleQuery() + + tz = timezone(timedelta(hours=-3)) + query.temporal("2016-10-10T00:02:01-03:00", datetime(2016, 10, 10, 0, 2, 1, tzinfo=tz)) + self.assertIn("temporal", query.params) + self.assertEqual(query.params["temporal"][0], "2016-10-10T03:02:01Z,2016-10-10T03:02:01Z") + def test_temporal_set(self): query = GranuleQuery() From 5731df4704e69b447b8c7a450d09d05f55ff54cf Mon Sep 17 00:00:00 2001 From: Frank Greguska <89428916+frankinspace@users.noreply.github.com> Date: Wed, 10 Apr 2024 11:52:27 -0700 Subject: [PATCH 6/9] Prep for 0.10.0 release --- CHANGELOG.md | 6 +- poetry.lock | 697 +++++++++++++++++---------------- pyproject.toml | 2 +- tests/test_multiple_queries.py | 34 +- 4 files changed, 394 insertions(+), 345 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 614a7e3..5e5f1ff 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -6,6 +6,8 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). ## [Unreleased] + +## [0.10.0] ### Changed - [issues/29](https://github.com/nasa/python_cmr/issues/29) - Date parsing has been improved to accept more ISO-8601 string formats as well as timezone-aware datetime objects ### Added @@ -52,7 +54,9 @@ to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). ## [Older] - Prior releases of this software originated from https://github.com/jddeal/python-cmr/releases -[Unreleased]: https://github.com/nasa/python_cmr/compare/v0.8.0...HEAD +[Unreleased]: https://github.com/nasa/python_cmr/compare/v0.10.0...HEAD +[0.10.0]: https://github.com/nasa/python_cmr/compare/v0.9.0...v0.10.0 +[0.9.0]: https://github.com/nasa/python_cmr/compare/v0.8.0...v0.9.0 [0.8.0]: https://github.com/nasa/python_cmr/compare/v0.7.0...v0.8.0 [0.7.0]: https://github.com/nasa/python_cmr/compare/v0.6.0...v0.7.0 [0.6.0]: https://github.com/nasa/python_cmr/compare/v0.5.0...v0.6.0 diff --git a/poetry.lock b/poetry.lock index 7ca381e..1602008 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. 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@@ -15,6 +15,7 @@ match_on=['method', 'scheme', 'host', 'port', 'path', 'query', 'headers'] ) + def assert_unique_granules_from_results(granules): """ When we invoke a search request multiple times we want to ensure that we don't @@ -24,12 +25,13 @@ def assert_unique_granules_from_results(granules): granule_ids = [] for granule in granules: granule_ids.append(granule['title']) - + unique_granules = set(granule_ids) return len(unique_granules) == len(granule_ids) + class TestMultipleQueries(unittest.TestCase): - + def test_get_more_than_2000(self): """ If we execute a get with a limit of more than 2000 @@ -40,13 +42,13 @@ def test_get_more_than_2000(self): api = GranuleQuery() granules = api.short_name("MOD02QKM").get(3000) - self.assertEqual(len(granules), 3000) + self.assertEqual(3000, len(granules)) # Assert all 3000 qranule results have unique granule ids assert_unique_granules_from_results(granules) # Assert that we performed two search results queries - self.assertEqual(len(cass), 2) + self.assertEqual(2, len(cass)) self.assertIsNone(api.headers.get('cmr-search-after')) - + def test_get(self): """ If we execute a get with no arguments then we expect @@ -56,13 +58,13 @@ def test_get(self): with my_vcr.use_cassette('tests/fixtures/vcr_cassettes/MOD02QKM_2000.yaml') as cass: api = GranuleQuery() granules = api.short_name("MOD02QKM").get() - self.assertEqual(len(granules), 2000) + self.assertEqual(2000, len(granules)) # Assert all 2000 qranule results have unique granule ids assert_unique_granules_from_results(granules) # Assert that we performed one search results query - self.assertEqual(len(cass), 1) + self.assertEqual(1, len(cass)) self.assertIsNone(api.headers.get('cmr-search-after')) - + def test_get_all_less_than_2k(self): """ If we execute a get_all then we expect multiple @@ -72,11 +74,11 @@ def test_get_all_less_than_2k(self): with my_vcr.use_cassette('tests/fixtures/vcr_cassettes/TELLUS_GRAC.yaml') as cass: api = GranuleQuery() granules = api.short_name("TELLUS_GRAC_L3_JPL_RL06_LND_v04").get_all() - self.assertEqual(len(granules), 163) + self.assertEqual(163, len(granules)) # Assert all 163 qranule results have unique granule ids assert_unique_granules_from_results(granules) # Assert that we performed a hits query and one search results query - self.assertEqual(len(cass), 2) + self.assertEqual(2, len(cass)) self.assertIsNone(api.headers.get('cmr-search-after')) def test_get_all_more_than_2k(self): @@ -88,13 +90,13 @@ def test_get_all_more_than_2k(self): with my_vcr.use_cassette('tests/fixtures/vcr_cassettes/CYGNSS.yaml') as cass: api = GranuleQuery() granules = api.short_name("CYGNSS_NOAA_L2_SWSP_25KM_V1.2").get_all() - self.assertEqual(len(granules), 2285) + self.assertEqual(2285, len(granules)) # Assert all 2285 qranule results have unique granule ids assert_unique_granules_from_results(granules) # Assert that we performed a hits query and two search results queries - self.assertEqual(len(cass), 3) + self.assertEqual(3, len(cass)) self.assertIsNone(api.headers.get('cmr-search-after')) - + def test_zero_hits_query(self): """ If we execute a get that has zero @@ -106,8 +108,8 @@ def test_zero_hits_query(self): granules = ( api.short_name("MOD09GA") .version("061") - .temporal(datetime(1990,1,1),datetime(1990,1,2)) + .temporal(datetime(1990, 1, 1), datetime(1990, 1, 2)) .get() ) - self.assertEqual(len(granules), 0) - self.assertIsNone(api.headers.get('cmr-search-after')) \ No newline at end of file + self.assertEqual(0, len(granules)) + self.assertIsNone(api.headers.get('cmr-search-after')) From ee92a8783118c72e43d1e5ea3a993d4b5be0b3c7 Mon Sep 17 00:00:00 2001 From: Frank Greguska <89428916+frankinspace@users.noreply.github.com> Date: Wed, 10 Apr 2024 11:53:38 -0700 Subject: [PATCH 7/9] /version 0.10.0-rc1 --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index fa7bf23..c3697c1 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "python-cmr" -version = "0.10.0-a0" +version = "0.10.0-rc1" description = "Python wrapper to the NASA Common Metadata Repository (CMR) API." authors = ["python_cmr "] license = "MIT" From 79c8270c43d5f1e5536a8cefc12293928886f012 Mon Sep 17 00:00:00 2001 From: Frank Greguska <89428916+frankinspace@users.noreply.github.com> Date: Wed, 10 Apr 2024 12:00:05 -0700 Subject: [PATCH 8/9] Bump action versions --- .github/workflows/python-app.yml | 8 ++++---- .github/workflows/python-publish.yml | 6 +++--- 2 files changed, 7 insertions(+), 7 deletions(-) diff --git a/.github/workflows/python-app.yml b/.github/workflows/python-app.yml index eca3267..912dc07 100644 --- a/.github/workflows/python-app.yml +++ b/.github/workflows/python-app.yml @@ -15,15 +15,15 @@ jobs: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 - name: Set up Python 3.10 - uses: actions/setup-python@v4 + uses: actions/setup-python@v5 with: python-version: "3.10" - name: Install Poetry - uses: abatilo/actions-poetry@v2 + uses: abatilo/actions-poetry@v3 with: - poetry-version: 1.5.1 + poetry-version: 1.7.1 - name: Install dependencies run: | poetry run python -m pip install --upgrade pip diff --git a/.github/workflows/python-publish.yml b/.github/workflows/python-publish.yml index 1e9d35e..525e4bb 100644 --- a/.github/workflows/python-publish.yml +++ b/.github/workflows/python-publish.yml @@ -21,13 +21,13 @@ jobs: id-token: write steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 - name: Set up Python - uses: actions/setup-python@v4 + uses: actions/setup-python@v5 with: python-version: '3.x' - name: Install Poetry - uses: abatilo/actions-poetry@v2 + uses: abatilo/actions-poetry@v3 with: poetry-version: 1.5.1 - name: Build package From 9220e57128fc8c543bcbc81a4892483ca1b27e2b Mon Sep 17 00:00:00 2001 From: Frank Greguska <89428916+frankinspace@users.noreply.github.com> Date: Wed, 10 Apr 2024 12:01:08 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