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deprecated
tool_collections/hgv/hgv_fundo
tool_collections/hgv/hgv_hilbertvis
tool_collections/hgv/snpfreq
tool_collections/taxonomy/find_diag_hits
tool_collections/taxonomy/gi2taxonomy
tool_collections/taxonomy/kraken2tax
tool_collections/taxonomy/lca_wrapper
tool_collections/taxonomy/poisson2test
tool_collections/taxonomy/t2ps
tool_collections/taxonomy/t2t_report
tool_collections/vcftools/vcftools_annotate
tool_collections/vcftools/vcftools_compare
tool_collections/vcftools/vcftools_isec
tool_collections/vcftools/vcftools_merge
tool_collections/vcftools/vcftools_slice
tool_collections/vcftools/vcftools_subset
tools/annotation_profiler
tools/best_regression_subsets
tools/blat_coverage_report
tools/blat_mapping
tools/canonical_correlation_analysis
tools/categorize_elements_satisfying_criteria
tools/ccat
tools/cd_hit_dup
tools/change_case
tools/compute_motif_frequencies_for_all_motifs
tools/compute_motifs_frequency
tools/compute_q_values
tools/convert_solid_color2nuc
tools/correlation
tools/ctd_batch
tools/cummerbund_to_tabular
tools/delete_overlapping_indels
tools/dgidb_annotator
tools/divide_pg_snp
tools/draw_stacked_barplots
tools/express
tools/fastqsolexa_to_fasta_qual
tools/featurecounter
tools/filter_transcripts_via_tracking
tools/generate_pc_lda_matrix
tools/getindelrates_3way
tools/getindels_2way
tools/gmaj
tools/hisat
tools/indels_3way
tools/kernel_canonical_correlation_analysis
tools/kernel_principal_component_analysis
tools/lastz_paired_reads
tools/lda_analysis
tools/linear_regression
tools/logistic_regression_vif
tools/macs
tools/maf_cpg_filter
tools/mapping_to_ucsc
tools/megablast_wrapper
tools/microsatellite_birthdeath
tools/microsats_alignment_level
tools/microsats_mutability
tools/mine
tools/multispecies_orthologous_microsats
tools/mutate_snp_codon
tools/partialr_square
tools/pearson_correlation
tools/pgsnp2gd_snp
tools/plot_from_lda
tools/principal_component_analysis
tools/quality_filter
tools/rcve
tools/rmap
tools/rmapq
tools/sam_bitwise_flag_filter
tools/sam_merge
tools/short_reads_figure_high_quality_length
tools/short_reads_figure_score
tools/short_reads_trim_seq
tools/show_beginning
tools/show_tail
tools/split_paired_reads
tools/substitution_rates
tools/t_test_two_samples
tools/table_annovar
tools/tophat
tools/tophat_fusion_post
tools/trimmer
tools/ucsc_custom_track
tools/vcf_annotate
tools/vcf_extract
tools/vcf_filter
tools/vcf_intersect
tools/vcf2pgsnp
tools/weightedaverage