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Blank plot pdf #4

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mJaredg opened this issue Nov 30, 2021 · 1 comment
Open

Blank plot pdf #4

mJaredg opened this issue Nov 30, 2021 · 1 comment

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@mJaredg
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mJaredg commented Nov 30, 2021

Hello. I am stuck at the final stages of generating the plot. I get a blank pdf and no png.
The error I get is here below. Any help with this?

Rscript plot_corrplot_rg.R input_rg.txt traitlist.txt corrplot 0.85 loaded Aggregation function missing: defaulting to length Aggregation function missing: defaulting to length Error in symbols(Pos, add = TRUE, inches = FALSE, squares = DAT.p, bg = col.fill, : invalid symbol parameter Calls: corrplot_nsquare -> corrplot -> symbols Execution halted

@mJaredg
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mJaredg commented Nov 30, 2021

It seems the ldsc-corrplot-rg script suggested here needs some edit when you want a correlation matrix figure with a diagonal rg of 1 between similar traits eg T2D v T2D where rg will be 1. I skipped the duplication steps from line 31 to 37 and got a correlation matrix of quantitative vs qualitative traits. What I wanted was a combine matrix of all traits. How can I achieve this ?

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