.gitignore

# test
*/test_*
data/test_*/report/*
data/test_*/res/*
data/res/*
data/examples/*/test_*
data/test_collapse/collapse/res/*
data/test_collapse/prepare/*
data/examples/database/*
data/test_cluster/predictions/*
data/test_cluster/coral/*
data/test_cluster/test*
data/simulated/sim*
data/examples/miraligner/sim_isomir_unique.fa
data/examples/cluster/seqs_map_*
data/examples/cluster/seqs_map.bam.bai
data/examples/cluster/res_cluster*
data/examples/miraligner/sim_mut_unique.fa
database/seqcluster.db
rna.ps
# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]


# docs

doc/source/_*

# C extensions
*.so

# Distribution / packaging
*.ipynb*
.Python
env/
bin/
build/
develop-eggs/
dist/
eggs/
lib/
lib64/
parts/
sdist/
var/
*.egg-info/
.installed.cfg
*.egg

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.coverage
.cache
nosetests.xml
coverage.xml

# Translations
*.mo

# Mr Developer
.mr.developer.cfg
.project
.pydevproject

# Rope
.ropeproject

# Django stuff:
*.log
*.pot

# Sphinx documentation
docs/_build/

# MACOSX
.DS_Store

# vim
.*swo
.*swp
.*sw*