error message

[NextGenBioinformatics]

Hi there,

I am using degPatterns() from DEGreport package to do the gene clustering analysis but encounter an error message below:

Large number of genes given. Please,make sure is not an error. NormallyOnly DE genes are useful for this function
.
Error in lower.to.upper.tri.inds(n) : 'n' must be >= 2
Calls: degPatterns -> .make_clusters -> diana -> lower.to.upper.tri.inds
Execution halted

Many thanks,

Tom

[lpantano]

Hi,

thank you for reporting this issue. Can you tell me what version are you using?

As well, how many genes are you input? More than 3K could make things very slow and break.

If you can save the objects you are using for the call and sending to me I can try to reproduce and solve the issue.

Thanks!