DESCRIPTION

Package: DEGreport
Version: 1.39.6
Date: 2024-02-06
Type: Package
Title: Report of DEG analysis
Description: Creation of ready-to-share figures of differential expression
    analyses of count data. It integrates some of the code
    mentioned in DESeq2 and edgeR vignettes, and report a ranked
    list of genes according to the fold changes mean and
    variability for each selected gene.
biocViews: DifferentialExpression, Visualization, RNASeq, ReportWriting,
    GeneExpression, ImmunoOncology
URL: http://lpantano.github.io/DEGreport/
BugReports: https://github.com/lpantano/DEGreport/issues
Suggests:
    BiocStyle,
    AnnotationDbi,
    limma,
    pheatmap,
    rmarkdown,
    statmod,
    testthat
Depends:
    R (>= 4.0.0)
Imports:
    utils,
    methods,
    Biobase,
    BiocGenerics,
    broom,
    circlize,
    ComplexHeatmap,
    cowplot,
    ConsensusClusterPlus,
    cluster,
    dendextend,
    DESeq2,
    dplyr,
    edgeR,
    ggplot2,
    ggdendro,
    grid,
    ggrepel,
    grDevices,
    knitr,
    logging,
    magrittr,
    psych,
    RColorBrewer,
    reshape,
    rlang,
    scales,
    stats,
    stringr,
    stringi,
    S4Vectors,
    SummarizedExperiment,
    tidyr,
    tibble
Authors@R: c(person("Lorena", "Pantano", email = "lorena.pantano@gmail.com", 
  role = c("aut", "cre")),
  person("John", "Hutchinson",  role = c("ctb")),
  person("Victor", "Barrera",  role = c("ctb")),
  person("Mary", "Piper",  role = c("ctb")),
  person("Radhika", "Khetani",  role = c("ctb")),
  person("Kenneth", "Daily", role=c("ctb")),
  person("Thanneer", "Malai Perumal", role=c("ctb")),
  person("Rory", "Kirchner",  role=c("ctb")),
  person("Michael", "Steinbaugh",  role=c("ctb")),
  person("Ivo", "Zeller",  role=c("ctb")))
Maintainer: Lorena Pantano <lorena.pantano@gmail.com>
License: MIT + file LICENSE
VignetteBuilder: knitr
RoxygenNote: 7.3.1
Encoding: UTF-8
Roxygen: list(markdown = TRUE)