protein sequence output file

[graciegracekk]

I'm running the dbcan on faa files on linux to predict the CAZymes and saw that I can get a protein sequence of the gene (this link shows an output of the gene with the protein sequence: https://bcb.unl.edu/dbCAN2/data/blast/20221121163906/CAZyme.pep) . How do I get that ^^output file?

[linnabrown]

Sorry I could not get your point. Could you rephrase ur question?

[graciegracekk]

hi, 1. I want to get a protein sequence of the CAZyme when I run the dbCAN. How do I get the output file that looks like this? (has the following info) NC_000913.3_1054 3.2.1.-:GH73(160-295):GH73_e114:GH73:N:3 MISDSKLLASAAWDAQSLNELKAKAGEDPAANIRPVARQVEGMFVQMMLKSMRDALPKDG LFSSEHTRLYTSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEESTPAAPMKFPLET VVRYQNQALSQLVQKAVPRNYDDSLPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQAAL ESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYL EALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQMKSISDK VSKTYSMNIDNLF* 2.Can I run dbCAN on both FAA and FNA files? or is it just FNA files? Grace

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On Thu, Jul 27, 2023 at 4:35 PM Le Huang ***@***.***> wrote: Sorry I could not get your point. Could you rephrase ur question? — Reply to this email directly, view it on GitHub <#123 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/BBRYYJ6RDJPVZERJFEN2AGDXSLGJ7ANCNFSM6AAAAAA22LYRKI> . You are receiving this because you authored the thread.Message ID: ***@***.***>

[linnabrown]

This file located in the temporary folder

    self.input_folder = args.input if args.input.endswith("/") else args.input +"/"

2. You can run faa or fna. You don't need to put them at the same time.