Error with rebin function

[piazza-lab]

Hi,
I got the following error with the latest (3.2.3) version of hicstuff trying to run the rebin function (which worked with previous versions):
Traceback (most recent call last):
File "/home/apiazza/miniforge3/envs/hicstuff323/bin/hicstuff", line 8, in
sys.exit(main())
File "/home/apiazza/miniforge3/envs/hicstuff323/lib/python3.10/site-packages/hicstuff/main.py", line 57, in main
command.execute()
File "/home/apiazza/miniforge3/envs/hicstuff323/lib/python3.10/site-packages/hicstuff/commands.py", line 1108, in execute
hic_map, _ = hcs.bin_bp_sparse(hic_map, frags.start_pos, binning)
AttributeError: module 'hicstuff.stats' has no attribute 'bin_bp_sparse'

Not sure what this is due to, as the arguments do not seem to have changed.
Thanks a lot in advance for your help.

[js2264]

Thx for the issue, it comes from a minor mistake which is now fixed in 343d58e. I bumped the version to 3.2.4. This will take some time to propagate to bioconda. In the meantime, you can install 3.2.4 using:

pip3 install -e git+https://github.com/koszullab/hicstuff.git@master#egg=hicstuff

Of note, rebin still has an unfixed bug, see #79. The current best approach is to bin from a pairs file using cooler cload.