DESCRIPTION

Package: HiContacts
Title: Analysing cool files in R with HiContacts
Version: 1.7.1
Date: 2022-08-16
Authors@R:
    c(person(given = "Jacques",
           family = "Serizay",
           role = c("aut", "cre"),
           email = "jacquesserizay@gmail.com",
           comment = c(ORCID = "0000-0002-4295-0624")))
Description: HiContacts provides a collection of tools to 
    analyse and visualize Hi-C datasets imported in R by HiCExperiment. 
License: MIT + file LICENSE
URL: https://github.com/js2264/HiContacts
BugReports: https://github.com/js2264/HiContacts/issues
Depends:
    R (>= 4.2),
    HiCExperiment
Imports:
    InteractionSet,
    SummarizedExperiment, 
    GenomicRanges,
    IRanges,
    GenomeInfoDb,
    S4Vectors,
    methods,
    BiocGenerics,
    BiocIO,
    BiocParallel, 
    RSpectra, 
    Matrix, 
    tibble,
    tidyr,
    dplyr,
    readr,
    stringr,
    ggplot2,
    ggrastr,
    scales, 
    stats, 
    utils
Suggests:
    HiContactsData,
    rtracklayer, 
    GenomicFeatures,
    Biostrings, 
    BSgenome.Scerevisiae.UCSC.sacCer3, 
    WGCNA, 
    Rfast,
    terra, 
    patchwork,
    testthat (>= 3.0.0),
    BiocStyle,
    knitr,
    rmarkdown
biocViews:
    HiC,
    DNA3DStructure
Encoding: UTF-8
VignetteBuilder: knitr
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3