From 6250dc329c0d39db553132f0a1d7953d64d7f4cf Mon Sep 17 00:00:00 2001
From: Jeremiah Lewis <4462211+jeremiahpslewis@users.noreply.github.com>
Date: Thu, 19 Dec 2024 12:48:17 +0100
Subject: [PATCH] Update Dockerfile and logging configuration in
 dddc_slurm_batch.jl; remove unbuffered option from sbatch script

---
 Dockerfile                  | 2 +-
 src/dddc_slurm_batch.jl     | 7 ++++++-
 src/dddc_slurm_hu_sbatch.sh | 1 -
 3 files changed, 7 insertions(+), 3 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index f1ef817b..7a368b47 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -1,4 +1,4 @@
-FROM julia:1.11
+FROM julia:1.11-alpine
 
 RUN mkdir /depot
 ENV JULIA_PATH=/usr/local/julia
diff --git a/src/dddc_slurm_batch.jl b/src/dddc_slurm_batch.jl
index 1e174635..f39ee8cf 100644
--- a/src/dddc_slurm_batch.jl
+++ b/src/dddc_slurm_batch.jl
@@ -1,7 +1,12 @@
 using Logging
 using LoggingExtras
 
-debuglogger = FormatLogger(println, stderr)
+f_logger = FormatLogger(stderr) do io, args
+    println(io, args._module, " | ", "[", args.level, "] ", args.message)
+end
+
+debuglogger = MinLevelLogger(f_logger, Logging.Info)
+
 global_logger(debuglogger)
 
 @info "Loading AlgComp packages."
diff --git a/src/dddc_slurm_hu_sbatch.sh b/src/dddc_slurm_hu_sbatch.sh
index 5ce44abc..63b805b9 100644
--- a/src/dddc_slurm_hu_sbatch.sh
+++ b/src/dddc_slurm_hu_sbatch.sh
@@ -7,7 +7,6 @@
 #SBATCH --cpus-per-task=32 # 128 core
 #SBATCH --time=24:00:00 # For full run true value should be <13 hours
 #SBATCH --partition standard
-#SBATCH --unbuffered
 
 # For full version, N_GRID_INCREMENTS=100
 export N_GRID_INCREMENTS=20 # Number of grid increments