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Hello there,
Hope this finds you well. Thank you for this tool.
I've Whole-exome data, hg38 human genome build. I downloaded data from https://github.com/im3sanger/dndscv_data/tree/master/data
I use the following code to have a first run:
dndsout = dndscv(df_mutation, refdb="RefCDS_human_GRCh38_GencodeV18_recommended.rda", cv=NULL) print(dndsout$sel_cv)
It works and no issues.
I've some questions on using files with covariates.
What covariates do I provide when I use RefCDS_human_hg19_GencodeV18_newcovariates.rda file? Or do I provide cv=null when using this file?
RefCDS_human_hg19_GencodeV18_newcovariates.rda
There are no covariates for hg38 in the data shipped with library.
Sorry, the manual doesn't mention much on this. https://htmlpreview.github.io/?http://github.com/im3sanger/dndscv/blob/master/vignettes/buildref.html
Looking forward for your inputs.
The text was updated successfully, but these errors were encountered:
Hello,
Please see this link for instructions: #30 (comment)
Best, Inigo
Sorry, something went wrong.
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Hello there,
Hope this finds you well. Thank you for this tool.
I've Whole-exome data, hg38 human genome build. I downloaded data from https://github.com/im3sanger/dndscv_data/tree/master/data
I use the following code to have a first run:
It works and no issues.
I've some questions on using files with covariates.
What covariates do I provide when I use
RefCDS_human_hg19_GencodeV18_newcovariates.rda
file? Or do I provide cv=null when using this file?There are no covariates for hg38 in the data shipped with library.
Sorry, the manual doesn't mention much on this. https://htmlpreview.github.io/?http://github.com/im3sanger/dndscv/blob/master/vignettes/buildref.html
Looking forward for your inputs.
The text was updated successfully, but these errors were encountered: