diff --git a/inst/getdata.R b/inst/getdata.R index 8d47890..b0ff5bb 100644 --- a/inst/getdata.R +++ b/inst/getdata.R @@ -2,7 +2,7 @@ # igraphdata R package # Copyright (C) 2010-2012 Gabor Csardi # 334 Harvard st, 02139 Cambridge, MA, USA -# +# # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or @@ -12,7 +12,7 @@ # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. -# +# # You should have received a copy of the GNU General Public License # along with this program; if not, write to the Free Software # Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA @@ -93,11 +93,11 @@ authors <- c("ChesLower", "Hagy, J.D.", "Ulanowicz, R. E., C. Bondavalli, J. J. Heymans, and M. S. Egnotovich", "mangwet", "Ulanowicz, R. E., C. Bondavalli, J. J. Heymans, and M. S. Egnotovich" - ) + ) Authors <- matrix(authors, nc=2, byrow=TRUE) -citations <- +citations <- "ChesLower,ChesMiddle,ChesUpper| Hagy, J.D. (2002) Eutrophication, hypoxia and trophic transfer efficiency in Chesapeake Bay PhD Dissertation, University of Maryland at College @@ -107,22 +107,22 @@ Chesapeake| Baird D. & Ulanowicz R.E. (1989) The seasonal dynamics 59:329-364. CrystalC,CrystalD| Homer, M. and W.M. Kemp. Unpublished Ms. See also Ulanowicz, R.E. 1986. Growth and Development: - Ecosystems Phenomenology. Springer, New York. pp 69-79. + Ecosystems Phenomenology. Springer, New York. pp 69-79. Maspalomas| Almunia, J., G. Basterretxea, J. Aristegui, and R.E. Ulanowicz. (1999) Benthic- Pelagic switching in a coastal subtropical lagoon. Estuarine, Coastal and Shelf Science 49:363-384. Michigan| Krause, A. and D. Mason. (In preparation.) A. Krause, PhD. Dissertation, Michigan State University. - Ann Arbor, MI. USA + Ann Arbor, MI. USA Mondego| Patricio, J. (In Preparation) Master's Thesis. - University of Coimbra, Coimbra, Portugal. + University of Coimbra, Coimbra, Portugal. Narragan| Monaco, M.E. and R.E. Ulanowicz. (1997) Comparative ecosystem trophic structure of three U.S. Mid-Atlantic estuaries. Mar. Ecol. Prog. Ser. 161:239-254. Rhode| Correll, D. (Unpublished manuscript) Smithsonian Institute, Chesapeake Bay Center for Environmental - Research, Edgewater, Maryland 21037-0028 USA. + Research, Edgewater, Maryland 21037-0028 USA. StMarks| Baird, D., J. Luczkovich and R. R. Christian. (1998) Assessment of spatial and temporal variability in ecosystem attributes of the St Marks National Wildlife @@ -205,7 +205,7 @@ for (n in names(foodwebs)) { foodwebs[[n]]$URL <- url foodwebs[[n]]$name <- Name[,2][match(n, Name[,1])] } - + save(foodwebs, file="/tmp/foodwebs.rda") ##################################################################### @@ -300,7 +300,7 @@ library(org.Sc.sgd.db) tmp <- tempdir() -urls <- paste(sep="", "http://www.nature.com/nature/journal/v417/n6887/extref/nature750-s", 1:4, ".doc") +urls <- paste(sep="", "https://static-content.springer.com/esm/art%3A10.1038%2Fnature750/MediaObjects/41586_2002_BFnature750_MOESM", 2:5, "_ESM.doc") dest <- paste(sep="", tmp, "/s", 1:4, ".txt") sapply(1:4, function(x) download.file(url=urls[x], destfile=dest[x]))