test.yaml

name: Test

on:
  push:
    branches: [main]
  pull_request:
    branches: [main]
  schedule:
    - cron: "0 5 1,15 * *"

concurrency:
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: true

jobs:
  test:
    runs-on: ${{ matrix.os }}
    defaults:
      run:
        shell: bash -e {0} # -e to fail on error

    strategy:
      fail-fast: false
      matrix:
        include:
          - os: ubuntu-latest
            python: "3.9"
            r: release
          - os: ubuntu-latest
            python: "3.11"
            r: release
          - os: ubuntu-latest
            python: "3.11"
            r: release
            pip-flags: "--pre"

    env:
      OS: ${{ matrix.os }}
      PYTHON: ${{ matrix.python }}
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      R_KEEP_PKG_SOURCE: yes

    steps:
      - uses: actions/checkout@v3
      - name: Set up Python ${{ matrix.python }}
        uses: actions/setup-python@v4
        with:
          python-version: ${{ matrix.python }}
          cache: "pip"
          cache-dependency-path: "**/pyproject.toml"
      - uses: r-lib/actions/setup-r@v2
        with:
          r-version: ${{ matrix.r }}
          use-public-rspm: true

      - name: Install test dependencies
        run: |
          python -m pip install --upgrade pip wheel
      - name: Install dependencies
        run: |
          pip install ".[dev,test,copykat]"

      - name: Install R dependencies
        run: |
          install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))
          # TODO: use copykat version from february, latest version seens to have a bug...
          pak::pkg_install(c('stringr', 'navinlabcode/copykat@674e331cf12ce14b62eaf6459f7c84a82fc4c775'))
        shell: Rscript {0}

      - name: Test
        env:
          MPLBACKEND: agg
          PLATFORM: ${{ matrix.os }}
          DISPLAY: :42
        run: |
          coverage run -m pytest -v --color=yes
      - name: Report coverage
        run: |
          coverage report
      - name: Upload coverage
        uses: codecov/codecov-action@v3