.gitignore

# History files
.Rhistory
.Rapp.history

# Session Data files
.RData
.RDataTmp

# User-specific files
.Ruserdata

# Example code in package build process
*-Ex.R

# Output files from R CMD build
/*.tar.gz

# Output files from R CMD check
/*.Rcheck/

# RStudio files
.Rproj.user/

# produced vignettes
vignettes/*.html
vignettes/*.pdf

# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth

# knitr and R markdown default cache directories
*_cache/
/cache/

# Temporary files created by R markdown
*.utf8.md
*.knit.md

# R Environment Variables
.Renviron

# pkgdown site
docs/

# translation temp files
po/*~

# RStudio Connect folder
rsconnect/

# MAC
*.DS_Store

# Data files
data/metadata/2023.03.13RSTR_Hawn_metadata.csv
data/rnaseq/GE.160_after_QC_voom_n80_201121.txt
data/snp/snp_unfiltered_MAF_HWE_10e_6_n80_filtered_by_annot_201118.txt.gz
data_clean/eQTL_data_all.RData
data_clean/eQTL_data_by_stim.RData
01_Cytokine/data/GE.delta_after_QC_voom_0_1_n80_201121.txt
01_Cytokine/data/GE.media_voom_n80_201121.txt
01_Cytokine/data/GE.TB_voom_n80_201121.txt
01_Cytokine/data/Toms_request_all_variants_1MB_flanking_073120.xlsx