methratio.py errors

[gill0110]

I am trying to methratio.py using following command line:
methratio.py -o fa1.1_methratio.txt -d Fxa.fasta -u -p fa1.1.bam

The error pop in as:
Traceback (most recent call last):
File "/home/jiao/miniconda2/envs/viewbs/bin/methratio.py", line 105, in
disp('loading reference file: %s ...' % options.reffile)
File "/home/jiao/miniconda2/envs/viewbs/bin/methratio.py", line 41, in disp
if not options.quiet: print >> sys.stderr, '[methratio] @%s \t%s' %(time.asctime(), txt)
TypeError: unsupported operand type(s) for >>: 'builtin_function_or_method' and '_io.TextIOWrapper'. Did you mean "print(, file=<output_stream>)"?
view: invalid option -- 'X'

[chrisamiller]

This is not an official source for the bsmap software, just a fork that our group long ago made for convenience. We didn't write the software and can't help with support. Best of luck!