Updating workflows/VGP-assembly-v2/Plot-Nx-Size from 0.1.1 to 0.1.2

[gxydevbot]

Hello! This is an automated update of the following workflow: workflows/VGP-assembly-v2/Plot-Nx-Size. I created this PR because I think one or more of the component tools are out of date, i.e. there is a newer version available on the ToolShed.

By comparing with the latest versions available on the ToolShed, it seems the following tools are outdated:

• toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.0 should be updated to toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1

The workflow release number has been updated from 0.1.1 to 0.1.2.

[github-actions]

Test Results (powered by Planemo)

Test Summary

Test State	Count
Total	1
Passed	0
Error	1
Failure	0
Skipped	0

Errored Tests

• ❌ Generate-Nx-and-Size-plots-for-multiple-assemblies.ga_0

  Execution Problem:

  • Failed to run workflow, at least one job is in [error] state.
    

  Workflow invocation details

  • Invocation Messages

  • Steps

    • Step 1: Collection of genomes to plot:

      • step_state: scheduled

    • Step 2: toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.6+galaxy0:

      • step_state: scheduled

      • Jobs

        • Job 1:

          • Job state is ok

          Command Line:

          • gfastats '/tmp/tmpj5tmc52d/files/5/f/2/dataset_5f285310-8f3b-45bf-9902-e090a75d08ac.dat' --out-size c   --tabular > '/tmp/tmpj5tmc52d/job_working_directory/000/3/outputs/dataset_e605e0e6-0b7d-4d11-827d-fa0e39e63e45.dat' --threads ${GALAXY_SLOTS:-8}

          Exit Code:

          • 0

          Traceback:

          Job Parameters:

          • Job parameter	Parameter value
            __input_ext	"input"
            __workflow_invocation_uuid__	"c5f7416c609d11efbbd9bfe0d8417e29"
            chromInfo	"/tmp/tmpj5tmc52d/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"
            dbkey	"?"
            mode_condition	{"__current_case__": 1, "discover_paths": false, "locale": false, "selector": "statistics", "statistics_condition": {"__current_case__": 0, "out_size": "c", "selector": "size"}, "tabular": true}
            target_condition	{"__current_case__": 0, "target_option": "false"}

        • Job 2:

          • Job state is ok

          Command Line:

          • gfastats '/tmp/tmpj5tmc52d/files/3/3/9/dataset_339cd22a-29c1-4b23-85cf-5c1e9eb9d4b8.dat' --out-size c   --tabular > '/tmp/tmpj5tmc52d/job_working_directory/000/4/outputs/dataset_d21afd57-3026-4806-9720-f1e29b560e3c.dat' --threads ${GALAXY_SLOTS:-8}

          Exit Code:

          • 0

          Traceback:

          Job Parameters:

          • Job parameter	Parameter value
            __input_ext	"input"
            __workflow_invocation_uuid__	"c5f7416c609d11efbbd9bfe0d8417e29"
            chromInfo	"/tmp/tmpj5tmc52d/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"
            dbkey	"?"
            mode_condition	{"__current_case__": 1, "discover_paths": false, "locale": false, "selector": "statistics", "statistics_condition": {"__current_case__": 0, "out_size": "c", "selector": "size"}, "tabular": true}
            target_condition	{"__current_case__": 0, "target_option": "false"}

    • Step 11: toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/5.1.0:

      • step_state: scheduled

      • Jobs

        • Job 1:

          • Job state is new

          Traceback:

          Job Parameters:

          • Job parameter	Parameter value
            __input_ext	"input"
            __workflow_invocation_uuid__	"c5f7416c609d11efbbd9bfe0d8417e29"
            chromInfo	"/tmp/tmpj5tmc52d/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"
            dbkey	"?"
            filename	{"__current_case__": 1, "add_name": false}
            one_header	false

    • Step 12: Cut1:

      • step_state: scheduled

      • Jobs

        • Job 1:

          • Job state is new

          Traceback:

          Job Parameters:

          • Job parameter	Parameter value
            __input_ext	"tabular"
            __workflow_invocation_uuid__	"c5f7416c609d11efbbd9bfe0d8417e29"
            chromInfo	"/tmp/tmpj5tmc52d/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"
            columnList	"c8,c5,c6"
            dbkey	"?"
            delimiter	"T"

    • Step 13: Cut1:

      • step_state: scheduled

      • Jobs

        • Job 1:

          • Job state is new

          Traceback:

          Job Parameters:

          • Job parameter	Parameter value
            __input_ext	"tabular"
            __workflow_invocation_uuid__	"c5f7416c609d11efbbd9bfe0d8417e29"
            chromInfo	"/tmp/tmpj5tmc52d/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"
            columnList	"c8,c4,c7"
            dbkey	"?"
            delimiter	"T"

    • Step 14: Nx Plot:

      • step_state: scheduled

      • Jobs

        • Job 1:

          • Job state is new

          Traceback:

          Job Parameters:

          • Job parameter	Parameter value
            __input_ext	"input"
            __workflow_invocation_uuid__	"c5f7416c609d11efbbd9bfe0d8417e29"
            adv	{"axis_text_customization": {"__current_case__": 0, "axis_customization": "default"}, "axis_title_customization": {"__current_case__": 0, "axis_customization": "default"}, "factor": {"__current_case__": 1, "colororder": "1", "colors": "Set1", "factorcol": "1", "factoring": "Single"}, "gridlinecust": "default", "legend": "yes", "plot_title_customization": {"__current_case__": 0, "axis_customization": "default"}, "scaling": {"__current_case__": 0, "plot_scaling": "Automatic"}, "theme": "bw", "transform": "none", "type_conditional": {"__current_case__": 2, "type_options": "lines"}}
            chromInfo	"/tmp/tmpj5tmc52d/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"
            dbkey	"?"
            out	{"additional_output_format": "none", "dpi_output_dim": "300.0", "height_output_dim": "7.0", "unit_output_dim": "in", "width_output_dim": "7.0"}
            title	""
            xlab	"x"
            xplot	"2"
            ylab	"Nx (Mb)"
            yplot	"3"

    • Step 15: Size Plot:

      • step_state: scheduled

      • Jobs

        • Job 1:

          • Job state is new

          Traceback:

          Job Parameters:

          • Job parameter	Parameter value
            __input_ext	"input"
            __workflow_invocation_uuid__	"c5f7416c609d11efbbd9bfe0d8417e29"
            adv	{"axis_text_customization": {"__current_case__": 0, "axis_customization": "default"}, "axis_title_customization": {"__current_case__": 0, "axis_customization": "default"}, "factor": {"__current_case__": 1, "colororder": "1", "colors": "Set1", "factorcol": "1", "factoring": "Single"}, "gridlinecust": "default", "legend": "yes", "plot_title_customization": {"__current_case__": 0, "axis_customization": "default"}, "scaling": {"__current_case__": 0, "plot_scaling": "Automatic"}, "theme": "bw", "transform": "none", "type_conditional": {"__current_case__": 2, "type_options": "lines"}}
            chromInfo	"/tmp/tmpj5tmc52d/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"
            dbkey	"?"
            out	{"additional_output_format": "none", "dpi_output_dim": "300.0", "height_output_dim": "7.0", "unit_output_dim": "in", "width_output_dim": "7.0"}
            title	""
            xlab	"Scaffold number"
            xplot	"2"
            ylab	"Cumulative Size (Mb)"
            yplot	"3"

    • Step 3: sort1:

      • step_state: scheduled

      • Jobs

        • Job 1:

          • Job state is ok

          Command Line:

          • python '/tmp/tmpj5tmc52d/galaxy-dev/tools/filters/sorter.py'  --input='/tmp/tmpj5tmc52d/files/e/6/0/dataset_e605e0e6-0b7d-4d11-827d-fa0e39e63e45.dat' --output='/tmp/tmpj5tmc52d/job_working_directory/000/5/outputs/dataset_07f70bb6-0e05-4889-b535-364030e4c959.dat'    --key=2,2nr   --header 0

          Exit Code:

          • 0

          Traceback:

          Job Parameters:

          • Job parameter	Parameter value
            __input_ext	"tabular"
            __workflow_invocation_uuid__	"c5f7416c609d11efbbd9bfe0d8417e29"
            chromInfo	"/tmp/tmpj5tmc52d/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"
            column	"2"
            column_set	[]
            dbkey	"?"
            header_lines	"0"
            order	"DESC"
            style	"num"

        • Job 2:

          • Job state is ok

          Command Line:

          • python '/tmp/tmpj5tmc52d/galaxy-dev/tools/filters/sorter.py'  --input='/tmp/tmpj5tmc52d/files/d/2/1/dataset_d21afd57-3026-4806-9720-f1e29b560e3c.dat' --output='/tmp/tmpj5tmc52d/job_working_directory/000/6/outputs/dataset_c384a092-2a78-409d-bd94-9dbb90f78777.dat'    --key=2,2nr   --header 0

          Exit Code:

          • 0

          Traceback:

          Job Parameters:

          • Job parameter	Parameter value
            __input_ext	"tabular"
            __workflow_invocation_uuid__	"c5f7416c609d11efbbd9bfe0d8417e29"
            chromInfo	"/tmp/tmpj5tmc52d/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"
            column	"2"
            column_set	[]
            dbkey	"?"
            header_lines	"0"
            order	"DESC"
            style	"num"

    • Step 4: toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1:

      • step_state: scheduled

      • Jobs

        • Job 1:

          • Job state is ok

          Command Line:

          • env -i $(which awk) --sandbox -v FS='	' -v OFS='	' --re-interval -f '/tmp/tmpj5tmc52d/job_working_directory/000/7/configs/tmpcxbveklx' '/tmp/tmpj5tmc52d/files/0/7/f/dataset_07f70bb6-0e05-4889-b535-364030e4c959.dat' > '/tmp/tmpj5tmc52d/job_working_directory/000/7/outputs/dataset_d4c0ed3d-098d-4c65-823d-07d0d1dc9469.dat'

          Exit Code:

          • 0

          Traceback:

          Job Parameters:

          • Job parameter	Parameter value
            __input_ext	"input"
            __workflow_invocation_uuid__	"c5f7416c609d11efbbd9bfe0d8417e29"
            chromInfo	"/tmp/tmpj5tmc52d/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"
            code	"{total += $2; $3 = total}1"
            dbkey	"?"

        • Job 2:

          • Job state is ok

          Command Line:

          • env -i $(which awk) --sandbox -v FS='	' -v OFS='	' --re-interval -f '/tmp/tmpj5tmc52d/job_working_directory/000/8/configs/tmpdeak__y_' '/tmp/tmpj5tmc52d/files/c/3/8/dataset_c384a092-2a78-409d-bd94-9dbb90f78777.dat' > '/tmp/tmpj5tmc52d/job_working_directory/000/8/outputs/dataset_127f3343-5341-44de-9f21-e89798a2b133.dat'

          Exit Code:

          • 0

          Traceback:

          Job Parameters:

          • Job parameter	Parameter value
            __input_ext	"input"
            __workflow_invocation_uuid__	"c5f7416c609d11efbbd9bfe0d8417e29"
            chromInfo	"/tmp/tmpj5tmc52d/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"
            code	"{total += $2; $3 = total}1"
            dbkey	"?"

    • Step 5: toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.8+galaxy0:

      • step_state: scheduled

      • Jobs

        • Job 1:

          • Job state is ok

          Command Line:

          • datamash         absmax 3 < /tmp/tmpj5tmc52d/files/d/4/c/dataset_d4c0ed3d-098d-4c65-823d-07d0d1dc9469.dat > '/tmp/tmpj5tmc52d/job_working_directory/000/9/outputs/dataset_b46ea0fe-164c-4b97-89ab-d9f7133f49c5.dat'

          Exit Code:

          • 0

          Traceback:

          Job Parameters:

          • Job parameter	Parameter value
            __input_ext	"input"
            __workflow_invocation_uuid__	"c5f7416c609d11efbbd9bfe0d8417e29"
            chromInfo	"/tmp/tmpj5tmc52d/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"
            dbkey	"?"
            grouping	""
            header_in	false
            header_out	false
            ignore_case	false
            narm	false
            need_sort	false
            operations	[{"__index__": 0, "op_column": "3", "op_name": "absmax"}]
            print_full_line	false

        • Job 2:

          • Job state is ok

          Command Line:

          • datamash         absmax 3 < /tmp/tmpj5tmc52d/files/1/2/7/dataset_127f3343-5341-44de-9f21-e89798a2b133.dat > '/tmp/tmpj5tmc52d/job_working_directory/000/10/outputs/dataset_38c0df02-26a0-426c-9173-3a5064978533.dat'

          Exit Code:

          • 0

          Traceback:

          Job Parameters:

          • Job parameter	Parameter value
            __input_ext	"input"
            __workflow_invocation_uuid__	"c5f7416c609d11efbbd9bfe0d8417e29"
            chromInfo	"/tmp/tmpj5tmc52d/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"
            dbkey	"?"
            grouping	""
            header_in	false
            header_out	false
            ignore_case	false
            narm	false
            need_sort	false
            operations	[{"__index__": 0, "op_column": "3", "op_name": "absmax"}]
            print_full_line	false

    • Step 6: toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.1:

      • step_state: scheduled

      • Jobs

        • Job 1:

          • Job state is ok

          Command Line:

          • perl /tmp/shed_dir/toolshed.g2.bx.psu.edu/repos/devteam/add_value/023f0a3760b3/add_value/fixedValueColumn.pl "/tmp/tmpj5tmc52d/files/d/4/c/dataset_d4c0ed3d-098d-4c65-823d-07d0d1dc9469.dat" "/tmp/tmpj5tmc52d/job_working_directory/000/11/outputs/dataset_de7b41bc-0ef6-464a-9350-aa36468eebb3.dat" "1" "yes"

          Exit Code:

          • 0

          Traceback:

          Job Parameters:

          • Job parameter	Parameter value
            __input_ext	"input"
            __workflow_invocation_uuid__	"c5f7416c609d11efbbd9bfe0d8417e29"
            chromInfo	"/tmp/tmpj5tmc52d/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"
            dbkey	"?"
            exp	"1"
            iterate	"yes"

        • Job 2:

          • Job state is ok

          Command Line:

          • perl /tmp/shed_dir/toolshed.g2.bx.psu.edu/repos/devteam/add_value/023f0a3760b3/add_value/fixedValueColumn.pl "/tmp/tmpj5tmc52d/files/1/2/7/dataset_127f3343-5341-44de-9f21-e89798a2b133.dat" "/tmp/tmpj5tmc52d/job_working_directory/000/12/outputs/dataset_a8a40911-560d-4486-9f7e-2b942c257216.dat" "1" "yes"

          Exit Code:

          • 0

          Traceback:

          Job Parameters:

          • Job parameter	Parameter value
            __input_ext	"input"
            __workflow_invocation_uuid__	"c5f7416c609d11efbbd9bfe0d8417e29"
            chromInfo	"/tmp/tmpj5tmc52d/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"
            dbkey	"?"
            exp	"1"
            iterate	"yes"

    • Step 7: param_value_from_file:

      • step_state: scheduled

      • Jobs

        • Job 1:

          • Job state is ok

          Command Line:

          • cd ../; python _evaluate_expression_.py

          Exit Code:

          • 0

          Traceback:

          Job Parameters:

          • Job parameter	Parameter value
            __input_ext	"tabular"
            __workflow_invocation_uuid__	"c5f7416c609d11efbbd9bfe0d8417e29"
            chromInfo	"/tmp/tmpj5tmc52d/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"
            dbkey	"?"
            param_type	"integer"
            remove_newlines	true

        • Job 2:

          • Job state is ok

          Command Line:

          • cd ../; python _evaluate_expression_.py

          Exit Code:

          • 0

          Traceback:

          Job Parameters:

          • Job parameter	Parameter value
            __input_ext	"tabular"
            __workflow_invocation_uuid__	"c5f7416c609d11efbbd9bfe0d8417e29"
            chromInfo	"/tmp/tmpj5tmc52d/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"
            dbkey	"?"
            param_type	"integer"
            remove_newlines	true

    • Step 8: toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1:

      • step_state: scheduled

      • Jobs

        • Job 1:

          • Job state is ok

          Command Line:

          • cd ../; python _evaluate_expression_.py

          Exit Code:

          • 0

          Traceback:

          Job Parameters:

          • Job parameter	Parameter value
            __input_ext	"input"
            __workflow_invocation_uuid__	"c5f7416c609d11efbbd9bfe0d8417e29"
            chromInfo	"/tmp/tmpj5tmc52d/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"
            components	[{"__index__": 0, "param_type": {"__current_case__": 0, "component_value": "c3/", "select_param_type": "text"}}, {"__index__": 1, "param_type": {"__current_case__": 1, "component_value": "2031175", "select_param_type": "integer"}}]
            dbkey	"?"

        • Job 2:

          • Job state is ok

          Command Line:

          • cd ../; python _evaluate_expression_.py

          Exit Code:

          • 0

          Traceback:

          Job Parameters:

          • Job parameter	Parameter value
            __input_ext	"input"
            __workflow_invocation_uuid__	"c5f7416c609d11efbbd9bfe0d8417e29"
            chromInfo	"/tmp/tmpj5tmc52d/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"
            components	[{"__index__": 0, "param_type": {"__current_case__": 0, "component_value": "c3/", "select_param_type": "text"}}, {"__index__": 1, "param_type": {"__current_case__": 1, "component_value": "1933626", "select_param_type": "integer"}}]
            dbkey	"?"

    • Step 9: toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1:

      • step_state: scheduled

      • Jobs

        • Job 1:

          • Job state is ok

          Command Line:

          • python '/tmp/shed_dir/toolshed.g2.bx.psu.edu/repos/devteam/column_maker/aff5135563c6/column_maker/column_maker.py' --column-types str,int,int,int  --file '/tmp/tmpj5tmc52d/job_working_directory/000/17/configs/tmpvb2stzww' --fail-on-non-existent-columns --fail-on-non-computable '/tmp/tmpj5tmc52d/files/d/e/7/dataset_de7b41bc-0ef6-464a-9350-aa36468eebb3.dat' '/tmp/tmpj5tmc52d/job_working_directory/000/17/outputs/dataset_287355f7-ab0b-4a7f-9486-7b6eeb015591.dat'

          Exit Code:

          • 0

          Standard Output:

          • c3/2031175
            c2/1000000
            c3/1000000
            Computing 3 new columns with instructions ['c3/2031175;;', 'c2/1000000;;', 'c3/1000000;;']
            Computed new column values for 100.00% of 86 lines written.
            

          Traceback:

          Job Parameters:

          • Job parameter	Parameter value
            __input_ext	"input"
            __workflow_invocation_uuid__	"c5f7416c609d11efbbd9bfe0d8417e29"
            avoid_scientific_notation	false
            chromInfo	"/tmp/tmpj5tmc52d/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"
            dbkey	"?"
            error_handling	{"auto_col_types": true, "fail_on_non_existent_columns": true, "non_computable": {"__current_case__": 0, "action": "--fail-on-non-computable"}}
            ops	{"__current_case__": 0, "expressions": [{"__index__": 0, "add_column": {"__current_case__": 0, "mode": "", "pos": ""}, "cond": "c3/2031175"}, {"__index__": 1, "add_column": {"__current_case__": 0, "mode": "", "pos": ""}, "cond": "c2/1000000"}, {"__index__": 2, "add_column": {"__current_case__": 0, "mode": "", "pos": ""}, "cond": "c3/1000000"}], "header_lines_select": "no"}

        • Job 2:

          • Job state is error

          Command Line:

          • python '/tmp/shed_dir/toolshed.g2.bx.psu.edu/repos/devteam/column_maker/aff5135563c6/column_maker/column_maker.py' --column-types str,int,int,int  --file '/tmp/tmpj5tmc52d/job_working_directory/000/18/configs/tmp2buu97cm' --fail-on-non-existent-columns --fail-on-non-computable '/tmp/tmpj5tmc52d/files/a/8/a/dataset_a8a40911-560d-4486-9f7e-2b942c257216.dat' '/tmp/tmpj5tmc52d/job_working_directory/000/18/outputs/dataset_634700e8-66d8-4aa3-8409-9bd20e0035fe.dat'

          Exit Code:

          • 127

          Standard Error:

          • /tmp/tmpj5tmc52d/job_working_directory/000/18/tool_script.sh: line 23: python: command not found
            

          Traceback:

          Job Parameters:

          • Job parameter	Parameter value
            __input_ext	"input"
            __workflow_invocation_uuid__	"c5f7416c609d11efbbd9bfe0d8417e29"
            avoid_scientific_notation	false
            chromInfo	"/tmp/tmpj5tmc52d/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"
            dbkey	"?"
            error_handling	{"auto_col_types": true, "fail_on_non_existent_columns": true, "non_computable": {"__current_case__": 0, "action": "--fail-on-non-computable"}}
            ops	{"__current_case__": 0, "expressions": [{"__index__": 0, "add_column": {"__current_case__": 0, "mode": "", "pos": ""}, "cond": "c3/1933626"}, {"__index__": 1, "add_column": {"__current_case__": 0, "mode": "", "pos": ""}, "cond": "c2/1000000"}, {"__index__": 2, "add_column": {"__current_case__": 0, "mode": "", "pos": ""}, "cond": "c3/1000000"}], "header_lines_select": "no"}

    • Step 10: toolshed.g2.bx.psu.edu/repos/mvdbeek/add_input_name_as_column/addName/0.2.0:

      • step_state: scheduled

      • Jobs

        • Job 1:

          • Job state is queued

          Command Line:

          • python '/tmp/shed_dir/toolshed.g2.bx.psu.edu/repos/mvdbeek/add_input_name_as_column/3284b72eef56/add_input_name_as_column/'add_input_name_as_column.py --input '/tmp/tmpj5tmc52d/files/2/8/7/dataset_287355f7-ab0b-4a7f-9486-7b6eeb015591.dat' --label 'Primary' --output '/tmp/tmpj5tmc52d/job_working_directory/000/19/outputs/dataset_8bc37262-2dbc-46c8-8379-29726f6a253d.dat'

          Traceback:

          Job Parameters:

          • Job parameter	Parameter value
            __input_ext	"input"
            __workflow_invocation_uuid__	"c5f7416c609d11efbbd9bfe0d8417e29"
            chromInfo	"/tmp/tmpj5tmc52d/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"
            dbkey	"?"
            header	{"__current_case__": 1, "contains_header": "no"}
            prepend	false

        • Job 2:

          • Job state is paused

          Traceback:

          Job Parameters:

          • Job parameter	Parameter value
            __input_ext	"input"
            __workflow_invocation_uuid__	"c5f7416c609d11efbbd9bfe0d8417e29"
            chromInfo	"/tmp/tmpj5tmc52d/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"
            dbkey	"?"
            header	{"__current_case__": 1, "contains_header": "no"}
            prepend	false

  • Other invocation details

    • error_message

      • Failed to run workflow, at least one job is in [error] state.

    • history_id

      • 9695121e0bffa38c

    • history_state

      • error

    • invocation_id

      • 9695121e0bffa38c

    • invocation_state

      • scheduled

    • workflow_id

      • 9695121e0bffa38c

[gxydevbot]

There are new updates, if you want to integrate them, close the PR and delete branch.

[gxydevbot]

There are new updates, if you want to integrate them, close the PR and delete branch.

[gxydevbot]

There are new updates, if you want to integrate them, close the PR and delete branch.

[gxydevbot]

There are new updates, if you want to integrate them, close the PR and delete branch.

[gxydevbot]

There are new updates, if you want to integrate them, close the PR and delete branch.

[gxydevbot]

There are new updates, they have been integrated to the PR, check the file diff.

[gxydevbot]

There are new updates, they have been integrated to the PR, check the file diff.

[gxydevbot]

There are new updates, they have been integrated to the PR, check the file diff.

[gxydevbot]

There are new updates, they have been integrated to the PR, check the file diff.

[gxydevbot]

There are new updates, they have been integrated to the PR, check the file diff.