The goal of fgeo.scbi is to provide easy access to data from the Smithsonian Conservation Biology Institute (SCBI) ForestGEO plot. For now, this is an experimental package to test a new approach to sharing ForestGEO data.
# install.packages("devtools")
devtools::install_github("forestgeo/fgeo.scbi")Access data from dryad (https://doi.org/10.5061/dryad.6nc8c).
Access data from the public data portal on GitHub.
library(purrr)
github_path <-
"SCBI-ForestGEO/SCBI-ForestGEO-Data/tree_main_census/data/census-csv-files"
download_urls <- ghr::ghr_ls_download_url(github_path)
download_urls %>%
purrr::map(readr::read_csv) %>%
purrr::set_names(fs::path_file(download_urls))
#> $census3_coord_local_plot.csv
#> # A tibble: 55,295 x 9
#> treeid stemid tag stemtag quadratname qx qy px py
#> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
#> 1 1 1 10079 1 104 3.7 13 3.7 73
#> 2 2 2 10168 1 103 17.3 18.9 17.3 58.9
#> 3 3 3 10567 1 110 9 17.1 9 197.
#> 4 4 4 12165 1 122 14.2 8.5 14.2 428.
#> 5 5 5 12190 1 122 9.4 16.4 9.4 436.
#> 6 6 6 12192 1 122 1.3 14 1.3 434
#> 7 7 7 12212 1 123 17.8 7.1 17.8 447.
#> 8 8 8 12261 1 125 18 3.7 18 484.
#> 9 9 9 12456 1 130 18 17.8 18 598.
#> 10 10 10 12551 1 132 5.6 7.7 5.6 628.
#> # ... with 55,285 more rows
#>
#> $scbi.full1.csv
#> # A tibble: 40,283 x 20
#> treeID stemID tag StemTag sp quadrat gx gy DBHID CensusID
#> <dbl> <dbl> <dbl> <dbl> <chr> <chr> <dbl> <dbl> <dbl> <dbl>
#> 1 1 1 10079 1 libe 0104 3.70 73 1 1
#> 2 2 2 10168 1 libe 0103 17.3 58.9 3 1
#> 3 3 3 10567 1 libe 0110 9 197. 5 1
#> 4 4 4 12165 1 nysy 0122 14.2 428. 7 1
#> 5 5 5 12190 1 havi 0122 9.40 436. 9 1
#> 6 6 6 12192 1 havi 0122 1.30 434 13 1
#> 7 7 7 12212 1 unk 0123 17.8 447. 15 1
#> 8 8 8 12261 1 libe 0125 18 484. 17 1
#> 9 9 9 12456 1 vipr 0130 18 598. 19 1
#> 10 10 10 12551 1 astr 0132 5.60 628. 22 1
#> # ... with 40,273 more rows, and 10 more variables: dbh <dbl>, pom <dbl>,
#> # hom <dbl>, ExactDate <date>, DFstatus <chr>, codes <chr>,
#> # nostems <dbl>, date <dbl>, status <chr>, agb <dbl>
#>
#> $scbi.full2.csv
#> # A tibble: 40,283 x 20
#> treeID stemID tag StemTag sp quadrat gx gy DBHID CensusID
#> <dbl> <dbl> <dbl> <dbl> <chr> <chr> <dbl> <dbl> <dbl> <dbl>
#> 1 1 1 10079 1 libe 0104 3.70 73 41801 2
#> 2 2 2 10168 1 libe 0103 17.3 58.9 41723 2
#> 3 3 3 10567 1 libe 0110 9 197. 42501 2
#> 4 4 4 12165 1 nysy 0122 14.2 428. 42869 2
#> 5 5 5 12190 1 havi 0122 9.40 436. 42904 2
#> 6 6 6 12192 1 havi 0122 1.30 434 42909 2
#> 7 7 31200 12212 2 unk 0123 17.8 447. 42946 2
#> 8 8 31201 12261 2 libe 0125 18 484. 43023 2
#> 9 9 31202 12456 2 vipr 0130 18 598. 43249 2
#> 10 10 10 12551 1 astr 0132 5.60 628. 43346 2
#> # ... with 40,273 more rows, and 10 more variables: dbh <dbl>, pom <dbl>,
#> # hom <dbl>, ExactDate <date>, DFstatus <chr>, codes <chr>,
#> # nostems <dbl>, date <dbl>, status <chr>, agb <dbl>
#>
#> $scbi.spptable.csv
#> # A tibble: 73 x 10
#> sp Latin Genus Species Family SpeciesID Authority IDLevel syn subsp
#> <chr> <chr> <chr> <chr> <chr> <dbl> <chr> <chr> <lgl> <lgl>
#> 1 acne Acer~ Acer negundo Sapin~ 1 <NA> species NA NA
#> 2 acpl Acer~ Acer platan~ Sapin~ 2 <NA> species NA NA
#> 3 acru Acer~ Acer rubrum Sapin~ 3 <NA> species NA NA
#> 4 acsp Acer~ Acer sp Sapin~ 4 <NA> Multip~ NA NA
#> 5 aial Aila~ Aila~ altiss~ Simar~ 5 <NA> species NA NA
#> 6 amar Amel~ Amel~ arborea Rosac~ 6 <NA> species NA NA
#> 7 astr Asim~ Asim~ triloba Annon~ 7 <NA> species NA NA
#> 8 beth Berb~ Berb~ thunbe~ Berbe~ 8 <NA> species NA NA
#> 9 caca Carp~ Carp~ caroli~ Betul~ 9 <NA> species NA NA
#> 10 caco Cary~ Carya cordif~ Jugla~ 10 <NA> species NA NA
#> # ... with 63 more rows
#>
#> $scbi.stem1.csv
#> # A tibble: 55,295 x 20
#> treeID stemID tag StemTag sp quadrat gx gy DBHID CensusID
#> <dbl> <dbl> <dbl> <dbl> <chr> <chr> <dbl> <dbl> <dbl> <dbl>
#> 1 1 1 10079 1 libe 0104 3.70 73 1 1
#> 2 1 31194 10079 2 libe 0104 3.70 73 2 1
#> 3 2 2 10168 1 libe 0103 17.3 58.9 3 1
#> 4 2 31195 10168 2 libe 0103 17.3 58.9 4 1
#> 5 3 3 10567 1 libe 0110 9 197. 5 1
#> 6 3 31196 10567 2 libe 0110 9 197. 6 1
#> 7 3 40394 10567 3 libe 0110 9 197. NA NA
#> 8 4 4 12165 1 nysy 0122 14.2 428. 7 1
#> 9 4 31197 12165 2 nysy 0122 14.2 428. 8 1
#> 10 5 5 12190 1 havi 0122 9.40 436. 9 1
#> # ... with 55,285 more rows, and 10 more variables: dbh <dbl>, pom <dbl>,
#> # hom <dbl>, ExactDate <date>, DFstatus <chr>, codes <chr>,
#> # countPOM <dbl>, date <dbl>, status <chr>, agb <dbl>
#>
#> $scbi.stem2.csv
#> # A tibble: 55,295 x 20
#> treeID stemID tag StemTag sp quadrat gx gy DBHID CensusID
#> <dbl> <dbl> <dbl> <dbl> <chr> <chr> <dbl> <dbl> <dbl> <dbl>
#> 1 1 1 10079 1 libe 0104 3.70 73 41801 2
#> 2 1 31194 10079 2 libe 0104 3.70 73 41802 2
#> 3 2 2 10168 1 libe 0103 17.3 58.9 41723 2
#> 4 2 31195 10168 2 libe 0103 17.3 58.9 41724 2
#> 5 3 3 10567 1 libe 0110 9 197. 42501 2
#> 6 3 31196 10567 2 libe 0110 9 197. 42502 2
#> 7 3 40394 10567 3 libe 0110 9 197. 80573 2
#> 8 4 4 12165 1 nysy 0122 14.2 428. 42869 2
#> 9 4 31197 12165 2 nysy 0122 14.2 428. 42870 2
#> 10 5 5 12190 1 havi 0122 9.40 436. 42904 2
#> # ... with 55,285 more rows, and 10 more variables: dbh <dbl>, pom <dbl>,
#> # hom <dbl>, ExactDate <date>, DFstatus <chr>, codes <chr>,
#> # countPOM <dbl>, date <dbl>, status <chr>, agb <dbl>