From 9a50608a0d1f7478c2f001e11d38b30a71787509 Mon Sep 17 00:00:00 2001
From: Simon Branford <s.j.branford@bham.ac.uk>
Date: Fri, 6 Sep 2024 14:15:28 +0100
Subject: [PATCH 1/2] adding easyconfigs: rnamotif-20240904-GCCcore-12.3.0.eb

---
 .../rnamotif-20240904-GCCcore-12.3.0.eb       | 42 +++++++++++++++++++
 1 file changed, 42 insertions(+)
 create mode 100644 easybuild/easyconfigs/r/rnamotif/rnamotif-20240904-GCCcore-12.3.0.eb

diff --git a/easybuild/easyconfigs/r/rnamotif/rnamotif-20240904-GCCcore-12.3.0.eb b/easybuild/easyconfigs/r/rnamotif/rnamotif-20240904-GCCcore-12.3.0.eb
new file mode 100644
index 00000000000..bb1513a04b2
--- /dev/null
+++ b/easybuild/easyconfigs/r/rnamotif/rnamotif-20240904-GCCcore-12.3.0.eb
@@ -0,0 +1,42 @@
+# This easyconfig was created by the BEAR Software team at the University of Birmingham.
+easyblock = 'MakeCp'
+
+name = 'rnamotif'
+version = '20240904'
+_commit = '697ee7fda4ff2f5181a33c0c3eac54d7b97409fa'
+
+homepage = "https://github.com/dacase/rnamotif"
+description = """The rnamotif program searchs input sequences for portions that match a given descriptor or "motif".
+ Matching sequences can also be ranked by various scoring functions."""
+
+toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
+
+github_account = 'dacase'
+source_urls = [GITHUB_SOURCE]
+sources = ['%s.tar.gz' % _commit]
+checksums = ['e9432e128ce7f1bfcf4898a36d56435272ad9b4e2d37f1866a95aa159c81fdfe']
+
+builddependencies = [
+    ('binutils', '2.40'),
+    ('Bison', '3.8.2'),
+    ('flex', '2.6.4'),
+
+]
+
+prebuildopts = 'sed -i "s/CFLAGS= -O2 -Wall/CFLAGS=$CFLAGS/" config.h &&'
+pretestopts = 'EFNDATA=%%(builddir)s/%%(name)s-%s/efndata' % _commit
+runtest = 'test'
+
+files_to_copy = [
+    (['src/rnamotif', 'src/rmprune', 'src/rmfmt', 'src/rm2ct'], 'bin'),
+    'LICENSE', 'efndata', 'Ecoli.trna.example',
+]
+
+sanity_check_paths = {
+    'files': ['bin/%(name)s'],
+    'dirs': ['efndata'],
+}
+
+modextravars = {'EFNDATA': 'efndata'}
+
+moduleclass = 'bio'

From 84798df187db79668e55befb2b87cd1f9accb40e Mon Sep 17 00:00:00 2001
From: Sam Moors <smoors@users.noreply.github.com>
Date: Fri, 13 Sep 2024 22:09:15 +0200
Subject: [PATCH 2/2] add sanity_check_commands

---
 .../easyconfigs/r/rnamotif/rnamotif-20240904-GCCcore-12.3.0.eb  | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/easybuild/easyconfigs/r/rnamotif/rnamotif-20240904-GCCcore-12.3.0.eb b/easybuild/easyconfigs/r/rnamotif/rnamotif-20240904-GCCcore-12.3.0.eb
index bb1513a04b2..742dabcaa85 100644
--- a/easybuild/easyconfigs/r/rnamotif/rnamotif-20240904-GCCcore-12.3.0.eb
+++ b/easybuild/easyconfigs/r/rnamotif/rnamotif-20240904-GCCcore-12.3.0.eb
@@ -37,6 +37,8 @@ sanity_check_paths = {
     'dirs': ['efndata'],
 }
 
+sanity_check_commands = ['rnamotif -h 2>&1 | grep usage']
+
 modextravars = {'EFNDATA': 'efndata'}
 
 moduleclass = 'bio'