From 3e3727adc631f13cc0cdf6edf8931924a29e1cd9 Mon Sep 17 00:00:00 2001 From: Alexander Grund Date: Fri, 13 Sep 2024 16:56:48 +0200 Subject: [PATCH] Fix code style issues in existing ECs These make the test fail, so fix them. --- .../c/CPB/CPB-11-4-2011-foss-2017a-Python-2.7.13.eb | 8 ++++---- .../f/FreeSurfer/FreeSurfer-5.3.0-centos4_x86_64.eb | 6 ++++-- .../f/FreeSurfer/FreeSurfer-6.0.0-centos6_x86_64.eb | 6 ++++-- .../f/FreeSurfer/FreeSurfer-6.0.1-centos6_x86_64.eb | 6 ++++-- .../f/FreeSurfer/FreeSurfer-7.1.1-centos6_x86_64.eb | 6 ++++-- .../f/FreeSurfer/FreeSurfer-7.1.1-centos7_x86_64.eb | 6 ++++-- .../f/FreeSurfer/FreeSurfer-7.1.1-centos8_x86_64.eb | 6 ++++-- .../easyconfigs/g/GConf/GConf-3.2.6-GCCcore-8.2.0.eb | 4 ++-- .../easyconfigs/g/GConf/GConf-3.2.6-GCCcore-8.3.0.eb | 4 ++-- easybuild/easyconfigs/g/GConf/GConf-3.2.6-foss-2016a.eb | 4 ++-- easybuild/easyconfigs/g/GConf/GConf-3.2.6-foss-2018b.eb | 4 ++-- easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2016a.eb | 4 ++-- easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2016b.eb | 4 ++-- easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2017a.eb | 4 ++-- easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2017b.eb | 4 ++-- .../h/HOME/HOME-0.9-foss-2017a-Python-2.7.13.eb | 3 ++- easybuild/easyconfigs/h/Hypre/Hypre-2.11.1-foss-2016a.eb | 7 ++++--- easybuild/easyconfigs/h/Hypre/Hypre-2.11.1-intel-2016a.eb | 7 ++++--- .../h/hanythingondemand/hanythingondemand-3.0.0-cli.eb | 3 ++- .../h/hanythingondemand/hanythingondemand-3.0.1-cli.eb | 3 ++- .../h/hanythingondemand/hanythingondemand-3.0.2-cli.eb | 3 ++- .../h/hanythingondemand/hanythingondemand-3.0.3-cli.eb | 3 ++- .../h/hanythingondemand/hanythingondemand-3.0.4-cli.eb | 3 ++- .../h/hanythingondemand/hanythingondemand-3.1.0-cli.eb | 3 ++- .../hanythingondemand-3.1.0-intel-2016a-Python-2.7.11.eb | 3 ++- .../h/hanythingondemand/hanythingondemand-3.1.1-cli.eb | 3 ++- .../hanythingondemand-3.1.1-intel-2016a-Python-2.7.11.eb | 3 ++- .../h/hanythingondemand/hanythingondemand-3.1.2-cli.eb | 3 ++- .../hanythingondemand-3.1.2-intel-2016a-Python-2.7.11.eb | 3 ++- .../h/hanythingondemand/hanythingondemand-3.1.3-cli.eb | 3 ++- .../hanythingondemand-3.1.3-intel-2016b-Python-2.7.12.eb | 3 ++- .../h/hanythingondemand/hanythingondemand-3.1.4-cli.eb | 3 ++- .../hanythingondemand-3.1.4-intel-2016b-Python-2.7.12.eb | 3 ++- .../h/hanythingondemand/hanythingondemand-3.2.0-cli.eb | 3 ++- .../hanythingondemand-3.2.0-intel-2016b-Python-2.7.12.eb | 3 ++- .../h/hanythingondemand/hanythingondemand-3.2.2-cli.eb | 3 ++- .../hanythingondemand-3.2.2-intel-2016b-Python-2.7.12.eb | 3 ++- .../i/inflection/inflection-1.3.5-foss-2023a-R-4.3.2.eb | 5 +++-- easybuild/easyconfigs/m/Maq/Maq-0.7.0.eb | 5 +++-- .../p/PileOMeth/PileOMeth-0.1.11-foss-2016b.eb | 5 +++-- .../p/pftoolsV3/pftoolsV3-20160324-foss-2016a.eb | 5 +++-- easybuild/easyconfigs/q/QtPy/QtPy-1.9.0-GCCcore-10.2.0.eb | 3 ++- .../q/QtPy/QtPy-1.9.0-GCCcore-8.3.0-Python-3.7.4.eb | 3 ++- .../Qtconsole/Qtconsole-4.7.7-foss-2019b-Python-3.7.4.eb | 3 ++- .../Qtconsole-4.7.7-fosscuda-2019b-Python-3.7.4.eb | 3 ++- .../q/Qtconsole/Qtconsole-5.0.2-GCCcore-10.2.0.eb | 3 ++- .../r/RMBlast/RMBlast-2.2.28-foss-2016a-Python-2.7.11.eb | 7 ++++--- easybuild/easyconfigs/s/SHORE/SHORE-0.9.3-foss-2016a.eb | 4 ++-- easybuild/easyconfigs/t/Tk/Tk-8.6.3-GCC-4.8.4-no-X11.eb | 3 ++- easybuild/easyconfigs/t/Tk/Tk-8.6.3-GCC-4.9.2-no-X11.eb | 3 ++- .../easyconfigs/t/Tk/Tk-8.6.4-GCC-4.9.3-2.25-no-X11.eb | 3 ++- .../easyconfigs/t/Tk/Tk-8.6.4-GNU-4.9.3-2.25-no-X11.eb | 3 ++- easybuild/easyconfigs/t/Tk/Tk-8.6.4-foss-2016a-no-X11.eb | 3 ++- .../easyconfigs/t/Tk/Tk-8.6.4-gimkl-2.11.5-no-X11.eb | 3 ++- .../t/Tk/Tk-8.6.4-intel-2016.02-GCC-4.9-no-X11.eb | 3 ++- .../easyconfigs/t/Tk/Tk-8.6.4-intel-2016a-libX11-1.6.3.eb | 3 ++- easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2016a-no-X11.eb | 3 ++- .../v/ViennaRNA/ViennaRNA-2.2.3_fix-pragma.patch | 2 +- 58 files changed, 139 insertions(+), 86 deletions(-) diff --git a/easybuild/easyconfigs/c/CPB/CPB-11-4-2011-foss-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/c/CPB/CPB-11-4-2011-foss-2017a-Python-2.7.13.eb index 18d84e42717..717931d64f6 100644 --- a/easybuild/easyconfigs/c/CPB/CPB-11-4-2011-foss-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/c/CPB/CPB-11-4-2011-foss-2017a-Python-2.7.13.eb @@ -5,10 +5,10 @@ version = '11-4-2011' versionsuffix = '-Python-%(pyver)s' homepage = 'http://tda.gatech.edu/software/cpb/index.html' -description = """CPB is a novel two-step Pearson correlation based biclustering approach to mine genes that are co-regulated with - a given reference gene in order to discover genes that function in a common biological process. - In the first step, the algorithm identifies subsets of genes with high correlation, reducing false negatives - with a nonparametric filtering scheme. +description = """CPB is a novel two-step Pearson correlation based biclustering approach to mine genes that are + co-regulated with a given reference gene in order to discover genes that function in a common biological process. + In the first step, the algorithm identifies subsets of genes with high correlation, reducing false negatives + with a nonparametric filtering scheme. In the second step, biclusters from multiple datasets are used to extract and rank gene correlation information.""" toolchain = {'name': 'foss', 'version': '2017a'} diff --git a/easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-5.3.0-centos4_x86_64.eb b/easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-5.3.0-centos4_x86_64.eb index 1d5111f9d0f..0d25671bc77 100644 --- a/easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-5.3.0-centos4_x86_64.eb +++ b/easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-5.3.0-centos4_x86_64.eb @@ -3,8 +3,10 @@ version = '5.3.0' versionsuffix = '-centos4_x86_64' homepage = 'http://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferWiki' -description = """FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data. -FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data.""" +description = """\ +FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data. +FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data. +""" toolchain = SYSTEM diff --git a/easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-6.0.0-centos6_x86_64.eb b/easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-6.0.0-centos6_x86_64.eb index a447630d1c8..80c2ced7057 100644 --- a/easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-6.0.0-centos6_x86_64.eb +++ b/easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-6.0.0-centos6_x86_64.eb @@ -3,8 +3,10 @@ version = '6.0.0' versionsuffix = '-centos6_x86_64' homepage = 'http://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferWiki' -description = """FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data. -FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data.""" +description = """\ +FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data. +FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data. +""" toolchain = SYSTEM diff --git a/easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-6.0.1-centos6_x86_64.eb b/easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-6.0.1-centos6_x86_64.eb index 2f780b5d6a6..f7c0a9dadb4 100644 --- a/easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-6.0.1-centos6_x86_64.eb +++ b/easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-6.0.1-centos6_x86_64.eb @@ -3,8 +3,10 @@ version = '6.0.1' versionsuffix = '-centos6_x86_64' homepage = 'https://surfer.nmr.mgh.harvard.edu/' -description = """FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data. -FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data.""" +description = """\ +FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data. +FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data. +""" toolchain = SYSTEM diff --git a/easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-7.1.1-centos6_x86_64.eb b/easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-7.1.1-centos6_x86_64.eb index 3ff7305bc66..d10977618e2 100644 --- a/easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-7.1.1-centos6_x86_64.eb +++ b/easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-7.1.1-centos6_x86_64.eb @@ -3,8 +3,10 @@ version = '7.1.1' versionsuffix = '-centos6_x86_64' homepage = 'https://surfer.nmr.mgh.harvard.edu/' -description = """FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data. -FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data.""" +description = """\ +FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data. +FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data. +""" toolchain = SYSTEM diff --git a/easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-7.1.1-centos7_x86_64.eb b/easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-7.1.1-centos7_x86_64.eb index e0c851d4607..254852cae61 100644 --- a/easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-7.1.1-centos7_x86_64.eb +++ b/easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-7.1.1-centos7_x86_64.eb @@ -3,8 +3,10 @@ version = '7.1.1' versionsuffix = '-centos7_x86_64' homepage = 'https://surfer.nmr.mgh.harvard.edu/' -description = """FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data. -FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data.""" +description = """\ +FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data. +FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data. +""" toolchain = SYSTEM diff --git a/easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-7.1.1-centos8_x86_64.eb b/easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-7.1.1-centos8_x86_64.eb index 0d0830a6309..761e52f4229 100644 --- a/easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-7.1.1-centos8_x86_64.eb +++ b/easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-7.1.1-centos8_x86_64.eb @@ -3,8 +3,10 @@ version = '7.1.1' versionsuffix = '-centos8_x86_64' homepage = 'https://surfer.nmr.mgh.harvard.edu/' -description = """FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data. -FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data.""" +description = """\ +FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data. +FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data. +""" toolchain = SYSTEM diff --git a/easybuild/easyconfigs/g/GConf/GConf-3.2.6-GCCcore-8.2.0.eb b/easybuild/easyconfigs/g/GConf/GConf-3.2.6-GCCcore-8.2.0.eb index 0bdfa679134..ec1c3d4e80d 100644 --- a/easybuild/easyconfigs/g/GConf/GConf-3.2.6-GCCcore-8.2.0.eb +++ b/easybuild/easyconfigs/g/GConf/GConf-3.2.6-GCCcore-8.2.0.eb @@ -43,9 +43,9 @@ dependencies = [ configopts = '--disable-orbit ' sanity_check_paths = { - 'files': ['bin/gconf%s' % x for x in['-merge-tree', 'tool-2']] + + 'files': ['bin/gconf%s' % x for x in ['-merge-tree', 'tool-2']] + ['bin/gsettings-%s-convert' % x for x in ['data', 'schema']] + - ['lib/libgconf-2.%s' % x for x in['a', 'so']], + ['lib/libgconf-2.%s' % x for x in ['a', 'so']], 'dirs': ['include', 'share'] } diff --git a/easybuild/easyconfigs/g/GConf/GConf-3.2.6-GCCcore-8.3.0.eb b/easybuild/easyconfigs/g/GConf/GConf-3.2.6-GCCcore-8.3.0.eb index 7abf72b477a..16a8fd8fe4a 100644 --- a/easybuild/easyconfigs/g/GConf/GConf-3.2.6-GCCcore-8.3.0.eb +++ b/easybuild/easyconfigs/g/GConf/GConf-3.2.6-GCCcore-8.3.0.eb @@ -43,9 +43,9 @@ dependencies = [ configopts = '--disable-orbit ' sanity_check_paths = { - 'files': ['bin/gconf%s' % x for x in['-merge-tree', 'tool-2']] + + 'files': ['bin/gconf%s' % x for x in ['-merge-tree', 'tool-2']] + ['bin/gsettings-%s-convert' % x for x in ['data', 'schema']] + - ['lib/libgconf-2.%s' % x for x in['a', 'so']], + ['lib/libgconf-2.%s' % x for x in ['a', 'so']], 'dirs': ['include', 'share'] } diff --git a/easybuild/easyconfigs/g/GConf/GConf-3.2.6-foss-2016a.eb b/easybuild/easyconfigs/g/GConf/GConf-3.2.6-foss-2016a.eb index 45f6636633b..1977d5abcd3 100644 --- a/easybuild/easyconfigs/g/GConf/GConf-3.2.6-foss-2016a.eb +++ b/easybuild/easyconfigs/g/GConf/GConf-3.2.6-foss-2016a.eb @@ -26,9 +26,9 @@ dependencies = [ configopts = '--disable-orbit ' sanity_check_paths = { - 'files': ['bin/gconf%s' % x for x in['-merge-tree', 'tool-2']] + + 'files': ['bin/gconf%s' % x for x in ['-merge-tree', 'tool-2']] + ['bin/gsettings-%s-convert' % x for x in ['data', 'schema']] + - ['lib/libgconf-2.%s' % x for x in['a', 'so']], + ['lib/libgconf-2.%s' % x for x in ['a', 'so']], 'dirs': ['include', 'share'] } diff --git a/easybuild/easyconfigs/g/GConf/GConf-3.2.6-foss-2018b.eb b/easybuild/easyconfigs/g/GConf/GConf-3.2.6-foss-2018b.eb index 15d1a7c8166..9cd1551c71a 100644 --- a/easybuild/easyconfigs/g/GConf/GConf-3.2.6-foss-2018b.eb +++ b/easybuild/easyconfigs/g/GConf/GConf-3.2.6-foss-2018b.eb @@ -26,9 +26,9 @@ dependencies = [ configopts = '--disable-orbit ' sanity_check_paths = { - 'files': ['bin/gconf%s' % x for x in['-merge-tree', 'tool-2']] + + 'files': ['bin/gconf%s' % x for x in ['-merge-tree', 'tool-2']] + ['bin/gsettings-%s-convert' % x for x in ['data', 'schema']] + - ['lib/libgconf-2.%s' % x for x in['a', 'so']], + ['lib/libgconf-2.%s' % x for x in ['a', 'so']], 'dirs': ['include', 'share'] } diff --git a/easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2016a.eb b/easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2016a.eb index a84f9eddd5a..01363dbbd3f 100644 --- a/easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2016a.eb +++ b/easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2016a.eb @@ -26,9 +26,9 @@ dependencies = [ configopts = '--disable-orbit ' sanity_check_paths = { - 'files': ['bin/gconf%s' % x for x in['-merge-tree', 'tool-2']] + + 'files': ['bin/gconf%s' % x for x in ['-merge-tree', 'tool-2']] + ['bin/gsettings-%s-convert' % x for x in ['data', 'schema']] + - ['lib/libgconf-2.%s' % x for x in['a', 'so']], + ['lib/libgconf-2.%s' % x for x in ['a', 'so']], 'dirs': ['include', 'share'] } diff --git a/easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2016b.eb b/easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2016b.eb index cc25368e304..ce33c79a9c8 100644 --- a/easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2016b.eb +++ b/easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2016b.eb @@ -26,9 +26,9 @@ dependencies = [ configopts = '--disable-orbit ' sanity_check_paths = { - 'files': ['bin/gconf%s' % x for x in['-merge-tree', 'tool-2']] + + 'files': ['bin/gconf%s' % x for x in ['-merge-tree', 'tool-2']] + ['bin/gsettings-%s-convert' % x for x in ['data', 'schema']] + - ['lib/libgconf-2.%s' % x for x in['a', 'so']], + ['lib/libgconf-2.%s' % x for x in ['a', 'so']], 'dirs': ['include', 'share'] } diff --git a/easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2017a.eb b/easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2017a.eb index 5c54d46358a..67bfea1c142 100644 --- a/easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2017a.eb +++ b/easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2017a.eb @@ -26,9 +26,9 @@ dependencies = [ configopts = '--disable-orbit ' sanity_check_paths = { - 'files': ['bin/gconf%s' % x for x in['-merge-tree', 'tool-2']] + + 'files': ['bin/gconf%s' % x for x in ['-merge-tree', 'tool-2']] + ['bin/gsettings-%s-convert' % x for x in ['data', 'schema']] + - ['lib/libgconf-2.%s' % x for x in['a', 'so']], + ['lib/libgconf-2.%s' % x for x in ['a', 'so']], 'dirs': ['include', 'share'] } diff --git a/easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2017b.eb b/easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2017b.eb index 5197bc0f0d2..3c093a1e245 100644 --- a/easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2017b.eb +++ b/easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2017b.eb @@ -26,9 +26,9 @@ dependencies = [ configopts = '--disable-orbit ' sanity_check_paths = { - 'files': ['bin/gconf%s' % x for x in['-merge-tree', 'tool-2']] + + 'files': ['bin/gconf%s' % x for x in ['-merge-tree', 'tool-2']] + ['bin/gsettings-%s-convert' % x for x in ['data', 'schema']] + - ['lib/libgconf-2.%s' % x for x in['a', 'so']], + ['lib/libgconf-2.%s' % x for x in ['a', 'so']], 'dirs': ['include', 'share'] } diff --git a/easybuild/easyconfigs/h/HOME/HOME-0.9-foss-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/h/HOME/HOME-0.9-foss-2017a-Python-2.7.13.eb index f98439d6964..0f5c250390f 100644 --- a/easybuild/easyconfigs/h/HOME/HOME-0.9-foss-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/h/HOME/HOME-0.9-foss-2017a-Python-2.7.13.eb @@ -5,7 +5,8 @@ version = '0.9' versionsuffix = '-Python-%(pyver)s' homepage = 'https://github.com/ListerLab/HOME' -description = """HOME (histogram of methylation) is a python package for differential methylation region (DMR) identification. +description = """\ +HOME (histogram of methylation) is a python package for differential methylation region (DMR) identification. The method uses histogram of methylation features and the linear Support Vector Machine (SVM) to identify DMRs from whole genome bisulfite sequencing (WGBS) data.""" diff --git a/easybuild/easyconfigs/h/Hypre/Hypre-2.11.1-foss-2016a.eb b/easybuild/easyconfigs/h/Hypre/Hypre-2.11.1-foss-2016a.eb index 5f5821f26c1..74a5f05d727 100644 --- a/easybuild/easyconfigs/h/Hypre/Hypre-2.11.1-foss-2016a.eb +++ b/easybuild/easyconfigs/h/Hypre/Hypre-2.11.1-foss-2016a.eb @@ -2,9 +2,10 @@ name = 'Hypre' version = '2.11.1' homepage = "https://computation.llnl.gov/casc/linear_solvers/sls_hypre.html" -description = """Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. - The problems of interest arise in the simulation codes being developed at LLNL and elsewhere - to study physical phenomena in the defense, environmental, energy, and biological sciences.""" +description = """\ +Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. +The problems of interest arise in the simulation codes being developed at LLNL and elsewhere +to study physical phenomena in the defense, environmental, energy, and biological sciences.""" toolchain = {'name': 'foss', 'version': '2016a'} toolchainopts = {'pic': True} diff --git a/easybuild/easyconfigs/h/Hypre/Hypre-2.11.1-intel-2016a.eb b/easybuild/easyconfigs/h/Hypre/Hypre-2.11.1-intel-2016a.eb index 2de6608fd99..4325e86407b 100644 --- a/easybuild/easyconfigs/h/Hypre/Hypre-2.11.1-intel-2016a.eb +++ b/easybuild/easyconfigs/h/Hypre/Hypre-2.11.1-intel-2016a.eb @@ -2,9 +2,10 @@ name = 'Hypre' version = '2.11.1' homepage = "https://computation.llnl.gov/casc/linear_solvers/sls_hypre.html" -description = """Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. - The problems of interest arise in the simulation codes being developed at LLNL and elsewhere - to study physical phenomena in the defense, environmental, energy, and biological sciences.""" +description = """\ +Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. +The problems of interest arise in the simulation codes being developed at LLNL and elsewhere +to study physical phenomena in the defense, environmental, energy, and biological sciences.""" toolchain = {'name': 'intel', 'version': '2016a'} toolchainopts = {'pic': True} diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.0.0-cli.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.0.0-cli.eb index 8ee9d1902b0..0b37d810e95 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.0.0-cli.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.0.0-cli.eb @@ -5,7 +5,8 @@ version = '3.0.0' versionsuffix = '-cli' homepage = 'https://github.com/hpcugent/hanythingondemand' -description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. +description = """\ +HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. It uses the Torque resource manager to do node allocation.""" toolchain = SYSTEM diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.0.1-cli.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.0.1-cli.eb index 95b33f19656..71fee4f149a 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.0.1-cli.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.0.1-cli.eb @@ -5,7 +5,8 @@ version = '3.0.1' versionsuffix = '-cli' homepage = 'https://github.com/hpcugent/hanythingondemand' -description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. +description = description = """\ +HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. It uses the Torque resource manager to do node allocation.""" toolchain = SYSTEM diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.0.2-cli.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.0.2-cli.eb index f5191f7af56..2baade2dc45 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.0.2-cli.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.0.2-cli.eb @@ -5,7 +5,8 @@ version = '3.0.2' versionsuffix = '-cli' homepage = 'https://github.com/hpcugent/hanythingondemand' -description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. +description = description = """\ +HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. It uses the Torque resource manager to do node allocation.""" toolchain = SYSTEM diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.0.3-cli.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.0.3-cli.eb index ce2aef97f03..388f5e75aaf 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.0.3-cli.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.0.3-cli.eb @@ -5,7 +5,8 @@ version = '3.0.3' versionsuffix = '-cli' homepage = 'https://github.com/hpcugent/hanythingondemand' -description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. +description = description = """\ +HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. It uses the Torque resource manager to do node allocation.""" toolchain = SYSTEM diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.0.4-cli.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.0.4-cli.eb index 0ba26f75c63..eaa4594ee56 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.0.4-cli.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.0.4-cli.eb @@ -5,7 +5,8 @@ version = '3.0.4' versionsuffix = '-cli' homepage = 'https://github.com/hpcugent/hanythingondemand' -description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. +description = description = """\ +HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. It uses the Torque resource manager to do node allocation.""" toolchain = SYSTEM diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.0-cli.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.0-cli.eb index b0ee3b3f289..d16def67764 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.0-cli.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.0-cli.eb @@ -5,7 +5,8 @@ version = '3.1.0' versionsuffix = '-cli' homepage = 'https://github.com/hpcugent/hanythingondemand' -description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. +description = description = """\ +HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. It uses the Torque resource manager to do node allocation.""" toolchain = SYSTEM diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.0-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.0-intel-2016a-Python-2.7.11.eb index ea6beb02ab9..10a4defad0e 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.0-intel-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.0-intel-2016a-Python-2.7.11.eb @@ -5,7 +5,8 @@ version = '3.1.0' versionsuffix = '-Python-%(pyver)s' homepage = 'https://github.com/hpcugent/hanythingondemand' -description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. +description = description = """\ +HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. It uses the Torque resource manager to do node allocation.""" toolchain = {'name': 'intel', 'version': '2016a'} diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.1-cli.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.1-cli.eb index 37a6b75aa02..1ea4f0cbc34 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.1-cli.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.1-cli.eb @@ -5,7 +5,8 @@ version = '3.1.1' versionsuffix = '-cli' homepage = 'https://github.com/hpcugent/hanythingondemand' -description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. +description = description = """\ +HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. It uses the Torque resource manager to do node allocation.""" toolchain = SYSTEM diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.1-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.1-intel-2016a-Python-2.7.11.eb index c8a9f916228..32cb5ffed64 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.1-intel-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.1-intel-2016a-Python-2.7.11.eb @@ -5,7 +5,8 @@ version = '3.1.1' versionsuffix = '-Python-%(pyver)s' homepage = 'https://github.com/hpcugent/hanythingondemand' -description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. +description = description = """\ +HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. It uses the Torque resource manager to do node allocation.""" toolchain = {'name': 'intel', 'version': '2016a'} diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.2-cli.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.2-cli.eb index b690d69de80..ee0f88775fb 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.2-cli.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.2-cli.eb @@ -5,7 +5,8 @@ version = '3.1.2' versionsuffix = '-cli' homepage = 'https://github.com/hpcugent/hanythingondemand' -description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. +description = description = """\ +HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. It uses the Torque resource manager to do node allocation.""" toolchain = SYSTEM diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.2-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.2-intel-2016a-Python-2.7.11.eb index dfb850cb0b4..05d5f197ee1 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.2-intel-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.2-intel-2016a-Python-2.7.11.eb @@ -5,7 +5,8 @@ version = '3.1.2' versionsuffix = '-Python-%(pyver)s' homepage = 'https://github.com/hpcugent/hanythingondemand' -description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. +description = description = """\ +HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. It uses the Torque resource manager to do node allocation.""" toolchain = {'name': 'intel', 'version': '2016a'} diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.3-cli.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.3-cli.eb index 1c54dbe72e5..af9468f4447 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.3-cli.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.3-cli.eb @@ -5,7 +5,8 @@ version = '3.1.3' versionsuffix = '-cli' homepage = 'https://github.com/hpcugent/hanythingondemand' -description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. +description = description = """\ +HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. It uses the Torque resource manager to do node allocation.""" toolchain = SYSTEM diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.3-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.3-intel-2016b-Python-2.7.12.eb index c344402bb0e..136fe79d73c 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.3-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.3-intel-2016b-Python-2.7.12.eb @@ -5,7 +5,8 @@ version = '3.1.3' versionsuffix = '-Python-%(pyver)s' homepage = 'https://github.com/hpcugent/hanythingondemand' -description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. +description = description = """\ +HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. It uses the Torque resource manager to do node allocation.""" toolchain = {'name': 'intel', 'version': '2016b'} diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.4-cli.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.4-cli.eb index 453fefa5448..58f26a92b4d 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.4-cli.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.4-cli.eb @@ -5,7 +5,8 @@ version = '3.1.4' versionsuffix = '-cli' homepage = 'https://github.com/hpcugent/hanythingondemand' -description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. +description = description = """\ +HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. It uses the Torque resource manager to do node allocation.""" toolchain = SYSTEM diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.4-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.4-intel-2016b-Python-2.7.12.eb index d7a2250529c..f4f90b542c8 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.4-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.1.4-intel-2016b-Python-2.7.12.eb @@ -5,7 +5,8 @@ version = '3.1.4' versionsuffix = '-Python-%(pyver)s' homepage = 'https://github.com/hpcugent/hanythingondemand' -description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. +description = description = """\ +HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. It uses the Torque resource manager to do node allocation.""" toolchain = {'name': 'intel', 'version': '2016b'} diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.2.0-cli.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.2.0-cli.eb index 25073afd3d6..937d3a1286e 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.2.0-cli.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.2.0-cli.eb @@ -5,7 +5,8 @@ version = '3.2.0' versionsuffix = '-cli' homepage = 'https://github.com/hpcugent/hanythingondemand' -description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. +description = description = """\ +HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. It uses the Torque resource manager to do node allocation.""" toolchain = SYSTEM diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.2.0-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.2.0-intel-2016b-Python-2.7.12.eb index 877aaf82531..86f48fabb3f 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.2.0-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.2.0-intel-2016b-Python-2.7.12.eb @@ -5,7 +5,8 @@ version = '3.2.0' versionsuffix = '-Python-%(pyver)s' homepage = 'https://github.com/hpcugent/hanythingondemand' -description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. +description = description = """\ +HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. It uses the Torque resource manager to do node allocation.""" toolchain = {'name': 'intel', 'version': '2016b'} diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.2.2-cli.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.2.2-cli.eb index 41fb847fcf7..c2c8f140676 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.2.2-cli.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.2.2-cli.eb @@ -5,7 +5,8 @@ version = '3.2.2' versionsuffix = '-cli' homepage = 'https://github.com/hpcugent/hanythingondemand' -description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. +description = description = """\ +HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. It uses the Torque resource manager to do node allocation.""" toolchain = SYSTEM diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.2.2-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.2.2-intel-2016b-Python-2.7.12.eb index 2b63aacbecc..459bce14690 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.2.2-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.2.2-intel-2016b-Python-2.7.12.eb @@ -5,7 +5,8 @@ version = '3.2.2' versionsuffix = '-Python-%(pyver)s' homepage = 'https://github.com/hpcugent/hanythingondemand' -description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. +description = description = """\ +HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. It uses the Torque resource manager to do node allocation.""" toolchain = {'name': 'intel', 'version': '2016b'} diff --git a/easybuild/easyconfigs/i/inflection/inflection-1.3.5-foss-2023a-R-4.3.2.eb b/easybuild/easyconfigs/i/inflection/inflection-1.3.5-foss-2023a-R-4.3.2.eb index af8c45ca393..4c9cbc8129e 100644 --- a/easybuild/easyconfigs/i/inflection/inflection-1.3.5-foss-2023a-R-4.3.2.eb +++ b/easybuild/easyconfigs/i/inflection/inflection-1.3.5-foss-2023a-R-4.3.2.eb @@ -5,8 +5,9 @@ version = '1.3.5' versionsuffix = '-R-%(rver)s' homepage = 'https://github.com/dchristop/inflection' -description = """inflection is a package that finds the inflection point of a planar curve which is given as a data frame - of discrete (xi,yi) points""" +description = """\ +inflection is a package that finds the inflection point of a planar curve which is given as a data frame +of discrete (xi,yi) points""" toolchain = {'name': 'foss', 'version': '2023a'} diff --git a/easybuild/easyconfigs/m/Maq/Maq-0.7.0.eb b/easybuild/easyconfigs/m/Maq/Maq-0.7.0.eb index bd8bd5efe52..31a17480629 100644 --- a/easybuild/easyconfigs/m/Maq/Maq-0.7.0.eb +++ b/easybuild/easyconfigs/m/Maq/Maq-0.7.0.eb @@ -8,8 +8,9 @@ name = 'Maq' version = '0.7.0' homepage = 'http://maq.sourceforge.net/maq-man.shtml' -description = """Maq is a software that builds mapping assemblies from short reads generated by the next-generation sequencing - machines.""" +description = """\ +Maq is a software that builds mapping assemblies from short reads generated by the next-generation sequencing machines\ +""" toolchain = SYSTEM diff --git a/easybuild/easyconfigs/p/PileOMeth/PileOMeth-0.1.11-foss-2016b.eb b/easybuild/easyconfigs/p/PileOMeth/PileOMeth-0.1.11-foss-2016b.eb index edf4ca1f373..eb5e1279a0b 100644 --- a/easybuild/easyconfigs/p/PileOMeth/PileOMeth-0.1.11-foss-2016b.eb +++ b/easybuild/easyconfigs/p/PileOMeth/PileOMeth-0.1.11-foss-2016b.eb @@ -1,7 +1,7 @@ ## # This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia # Homepage: https://www.adelaide.edu.au/phoenix/ -# +# # Copyright:: adelaide.edu.au/phoenix # Authors:: Robert Qiao , Exe Escobedo # License:: @@ -15,7 +15,8 @@ name = 'PileOMeth' version = '0.1.11' homepage = 'https://github.com/dpryan79/PileOMeth' -description = """PileOMeth processes a coordinate-sorted and indexed BAM or CRAM file containing some form of BS-seq alignments. +description = """\ +PileOMeth processes a coordinate-sorted and indexed BAM or CRAM file containing some form of BS-seq alignments. PileOMeth extracts per-base methylation metrics from them. PileOMeth requires an indexed fasta file containing the reference genome as well. """ diff --git a/easybuild/easyconfigs/p/pftoolsV3/pftoolsV3-20160324-foss-2016a.eb b/easybuild/easyconfigs/p/pftoolsV3/pftoolsV3-20160324-foss-2016a.eb index f72f7b4c0ec..bcd872567de 100644 --- a/easybuild/easyconfigs/p/pftoolsV3/pftoolsV3-20160324-foss-2016a.eb +++ b/easybuild/easyconfigs/p/pftoolsV3/pftoolsV3-20160324-foss-2016a.eb @@ -4,8 +4,9 @@ name = 'pftoolsV3' version = '20160324' homepage = 'http://web.expasy.org/pftools/' -description = """The pftools package contains all the software necessary to build protein and DNA generalized profiles and use - them to scan and align sequences, and search databases. +description = """\ +The pftools package contains all the software necessary to build protein and DNA generalized profiles and use +them to scan and align sequences, and search databases. """ toolchain = {'name': 'foss', 'version': '2016a'} diff --git a/easybuild/easyconfigs/q/QtPy/QtPy-1.9.0-GCCcore-10.2.0.eb b/easybuild/easyconfigs/q/QtPy/QtPy-1.9.0-GCCcore-10.2.0.eb index 863392420ba..2db677bda27 100644 --- a/easybuild/easyconfigs/q/QtPy/QtPy-1.9.0-GCCcore-10.2.0.eb +++ b/easybuild/easyconfigs/q/QtPy/QtPy-1.9.0-GCCcore-10.2.0.eb @@ -4,7 +4,8 @@ name = 'QtPy' version = '1.9.0' homepage = "https://github.com/spyder-ide/qtpy" -description = """QtPy is a small abstraction layer that lets you write applications using a single API call to either PyQt or PySide. +description = """\ +QtPy is a small abstraction layer that lets you write applications using a single API call to either PyQt or PySide. It provides support for PyQt5, PyQt4, PySide2 and PySide.""" toolchain = {'name': 'GCCcore', 'version': '10.2.0'} diff --git a/easybuild/easyconfigs/q/QtPy/QtPy-1.9.0-GCCcore-8.3.0-Python-3.7.4.eb b/easybuild/easyconfigs/q/QtPy/QtPy-1.9.0-GCCcore-8.3.0-Python-3.7.4.eb index 09588551870..795888b6f87 100644 --- a/easybuild/easyconfigs/q/QtPy/QtPy-1.9.0-GCCcore-8.3.0-Python-3.7.4.eb +++ b/easybuild/easyconfigs/q/QtPy/QtPy-1.9.0-GCCcore-8.3.0-Python-3.7.4.eb @@ -5,7 +5,8 @@ version = '1.9.0' versionsuffix = '-Python-%(pyver)s' homepage = "https://github.com/spyder-ide/qtpy" -description = """QtPy is a small abstraction layer that lets you write applications using a single API call to either PyQt or PySide. +description = """\ +QtPy is a small abstraction layer that lets you write applications using a single API call to either PyQt or PySide. It provides support for PyQt5, PyQt4, PySide2 and PySide.""" toolchain = {'name': 'GCCcore', 'version': '8.3.0'} diff --git a/easybuild/easyconfigs/q/Qtconsole/Qtconsole-4.7.7-foss-2019b-Python-3.7.4.eb b/easybuild/easyconfigs/q/Qtconsole/Qtconsole-4.7.7-foss-2019b-Python-3.7.4.eb index 9fe99bab044..9d91b282995 100644 --- a/easybuild/easyconfigs/q/Qtconsole/Qtconsole-4.7.7-foss-2019b-Python-3.7.4.eb +++ b/easybuild/easyconfigs/q/Qtconsole/Qtconsole-4.7.7-foss-2019b-Python-3.7.4.eb @@ -5,7 +5,8 @@ version = '4.7.7' versionsuffix = '-Python-%(pyver)s' homepage = 'https://jupyter.org/' -description = """A rich Qt-based console for working with Jupyter kernels, supporting rich media output, session export, and more. +description = """\ +A rich Qt-based console for working with Jupyter kernels, supporting rich media output, session export, and more. The Qtconsole is a very lightweight application that largely feels like a terminal, but provides a number of enhancements only possible in a GUI, such as inline figures, proper multiline editing with syntax highlighting, graphical calltips, and more.""" diff --git a/easybuild/easyconfigs/q/Qtconsole/Qtconsole-4.7.7-fosscuda-2019b-Python-3.7.4.eb b/easybuild/easyconfigs/q/Qtconsole/Qtconsole-4.7.7-fosscuda-2019b-Python-3.7.4.eb index 1e182d772d1..6dd1bf26923 100644 --- a/easybuild/easyconfigs/q/Qtconsole/Qtconsole-4.7.7-fosscuda-2019b-Python-3.7.4.eb +++ b/easybuild/easyconfigs/q/Qtconsole/Qtconsole-4.7.7-fosscuda-2019b-Python-3.7.4.eb @@ -5,7 +5,8 @@ version = '4.7.7' versionsuffix = '-Python-%(pyver)s' homepage = 'https://jupyter.org/' -description = """A rich Qt-based console for working with Jupyter kernels, supporting rich media output, session export, and more. +description = """\ +A rich Qt-based console for working with Jupyter kernels, supporting rich media output, session export, and more. The Qtconsole is a very lightweight application that largely feels like a terminal, but provides a number of enhancements only possible in a GUI, such as inline figures, proper multiline editing with syntax highlighting, graphical calltips, and more.""" diff --git a/easybuild/easyconfigs/q/Qtconsole/Qtconsole-5.0.2-GCCcore-10.2.0.eb b/easybuild/easyconfigs/q/Qtconsole/Qtconsole-5.0.2-GCCcore-10.2.0.eb index 26585354a27..3c1c6c00326 100644 --- a/easybuild/easyconfigs/q/Qtconsole/Qtconsole-5.0.2-GCCcore-10.2.0.eb +++ b/easybuild/easyconfigs/q/Qtconsole/Qtconsole-5.0.2-GCCcore-10.2.0.eb @@ -4,7 +4,8 @@ name = 'Qtconsole' version = '5.0.2' homepage = 'https://jupyter.org/' -description = """A rich Qt-based console for working with Jupyter kernels, supporting rich media output, session export, and more. +description = """\ +A rich Qt-based console for working with Jupyter kernels, supporting rich media output, session export, and more. The Qtconsole is a very lightweight application that largely feels like a terminal, but provides a number of enhancements only possible in a GUI, such as inline figures, proper multiline editing with syntax highlighting, graphical calltips, and more.""" diff --git a/easybuild/easyconfigs/r/RMBlast/RMBlast-2.2.28-foss-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/r/RMBlast/RMBlast-2.2.28-foss-2016a-Python-2.7.11.eb index d6dced35466..3d2c1d05449 100644 --- a/easybuild/easyconfigs/r/RMBlast/RMBlast-2.2.28-foss-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/r/RMBlast/RMBlast-2.2.28-foss-2016a-Python-2.7.11.eb @@ -5,9 +5,10 @@ version = '2.2.28' versionsuffix = '-Python-2.7.11' homepage = 'http://www.repeatmasker.org/RMBlast.html' -description = """RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST suite. The primary difference between - this distribution and the NCBI distribution is the addition of a new program 'rmblastn' for use with RepeatMasker and - RepeatModeler.""" +description = """\ +RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST suite. The primary difference between +this distribution and the NCBI distribution is the addition of a new program 'rmblastn' for use with RepeatMasker and +RepeatModeler.""" toolchain = {'name': 'foss', 'version': '2016a'} diff --git a/easybuild/easyconfigs/s/SHORE/SHORE-0.9.3-foss-2016a.eb b/easybuild/easyconfigs/s/SHORE/SHORE-0.9.3-foss-2016a.eb index 4078e01a54f..e8004498a87 100644 --- a/easybuild/easyconfigs/s/SHORE/SHORE-0.9.3-foss-2016a.eb +++ b/easybuild/easyconfigs/s/SHORE/SHORE-0.9.3-foss-2016a.eb @@ -4,8 +4,8 @@ name = 'SHORE' version = '0.9.3' homepage = "http://1001genomes.org/software/shore.html" -description = """SHORE, for Short Read, is a mapping and analysis pipeline for short read data produced on the Illumina platform. -""" +description = """\ +SHORE, for Short Read, is a mapping and analysis pipeline for short read data produced on the Illumina platform.""" toolchain = {'name': 'foss', 'version': '2016a'} diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.6.3-GCC-4.8.4-no-X11.eb b/easybuild/easyconfigs/t/Tk/Tk-8.6.3-GCC-4.8.4-no-X11.eb index e49d8019731..e5b3143748c 100644 --- a/easybuild/easyconfigs/t/Tk/Tk-8.6.3-GCC-4.8.4-no-X11.eb +++ b/easybuild/easyconfigs/t/Tk/Tk-8.6.3-GCC-4.8.4-no-X11.eb @@ -5,7 +5,8 @@ version = '8.6.3' versionsuffix = '-no-X11' homepage = 'http://www.tcl.tk/' -description = """Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building +description = """\ +Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.""" toolchain = {'name': 'GCC', 'version': '4.8.4'} diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.6.3-GCC-4.9.2-no-X11.eb b/easybuild/easyconfigs/t/Tk/Tk-8.6.3-GCC-4.9.2-no-X11.eb index df6346fdf86..78d6c1f8ed3 100644 --- a/easybuild/easyconfigs/t/Tk/Tk-8.6.3-GCC-4.9.2-no-X11.eb +++ b/easybuild/easyconfigs/t/Tk/Tk-8.6.3-GCC-4.9.2-no-X11.eb @@ -5,7 +5,8 @@ version = '8.6.3' versionsuffix = '-no-X11' homepage = 'http://www.tcl.tk/' -description = """Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building +description = """\ +Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.""" toolchain = {'name': 'GCC', 'version': '4.9.2'} diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.6.4-GCC-4.9.3-2.25-no-X11.eb b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-GCC-4.9.3-2.25-no-X11.eb index 8a30be2061d..a29bee9e23c 100644 --- a/easybuild/easyconfigs/t/Tk/Tk-8.6.4-GCC-4.9.3-2.25-no-X11.eb +++ b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-GCC-4.9.3-2.25-no-X11.eb @@ -5,7 +5,8 @@ version = '8.6.4' versionsuffix = '-no-X11' homepage = 'http://www.tcl.tk/' -description = """Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building +description = """\ +Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.""" toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'} diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.6.4-GNU-4.9.3-2.25-no-X11.eb b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-GNU-4.9.3-2.25-no-X11.eb index 50d6e634558..136ad730001 100644 --- a/easybuild/easyconfigs/t/Tk/Tk-8.6.4-GNU-4.9.3-2.25-no-X11.eb +++ b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-GNU-4.9.3-2.25-no-X11.eb @@ -5,7 +5,8 @@ version = '8.6.4' versionsuffix = '-no-X11' homepage = 'http://www.tcl.tk/' -description = """Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building +description = """\ +Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.""" toolchain = {'name': 'GNU', 'version': '4.9.3-2.25'} diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.6.4-foss-2016a-no-X11.eb b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-foss-2016a-no-X11.eb index 57e512249bd..e370a4da3e2 100644 --- a/easybuild/easyconfigs/t/Tk/Tk-8.6.4-foss-2016a-no-X11.eb +++ b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-foss-2016a-no-X11.eb @@ -5,7 +5,8 @@ version = '8.6.4' versionsuffix = '-no-X11' homepage = 'http://www.tcl.tk/' -description = """Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building +description = """\ +Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.""" toolchain = {'name': 'foss', 'version': '2016a'} diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.6.4-gimkl-2.11.5-no-X11.eb b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-gimkl-2.11.5-no-X11.eb index be28b60358a..ea8d4c020d7 100644 --- a/easybuild/easyconfigs/t/Tk/Tk-8.6.4-gimkl-2.11.5-no-X11.eb +++ b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-gimkl-2.11.5-no-X11.eb @@ -5,7 +5,8 @@ version = '8.6.4' versionsuffix = '-no-X11' homepage = 'http://www.tcl.tk/' -description = """Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building +description = """\ +Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.""" toolchain = {'name': 'gimkl', 'version': '2.11.5'} diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2016.02-GCC-4.9-no-X11.eb b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2016.02-GCC-4.9-no-X11.eb index 873aa2d811e..cb069c293be 100644 --- a/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2016.02-GCC-4.9-no-X11.eb +++ b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2016.02-GCC-4.9-no-X11.eb @@ -5,7 +5,8 @@ version = '8.6.4' versionsuffix = '-no-X11' homepage = 'http://www.tcl.tk/' -description = """Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building +description = """\ +Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.""" toolchain = {'name': 'intel', 'version': '2016.02-GCC-4.9'} diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2016a-libX11-1.6.3.eb b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2016a-libX11-1.6.3.eb index c3146e1bea8..8deec3a74de 100644 --- a/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2016a-libX11-1.6.3.eb +++ b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2016a-libX11-1.6.3.eb @@ -7,7 +7,8 @@ local_libxver = '1.6.3' versionsuffix = '-%s-%s' % (local_libx11, local_libxver) homepage = 'http://www.tcl.tk/' -description = """Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building +description = """\ +Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.""" toolchain = {'name': 'intel', 'version': '2016a'} diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2016a-no-X11.eb b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2016a-no-X11.eb index 3174f88f273..3efb9ba558c 100644 --- a/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2016a-no-X11.eb +++ b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2016a-no-X11.eb @@ -5,7 +5,8 @@ version = '8.6.4' versionsuffix = '-no-X11' homepage = 'http://www.tcl.tk/' -description = """Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building +description = """\ +Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.""" toolchain = {'name': 'intel', 'version': '2016a'} diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.2.3_fix-pragma.patch b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.2.3_fix-pragma.patch index b53cab1ffff..6d990158377 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.2.3_fix-pragma.patch +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.2.3_fix-pragma.patch @@ -12,7 +12,7 @@ author: Kenneth Hoste (HPC-UGent) + #pragma omp parallel for for (i=0; i<=n3; i++){ c[i] = (int *) vrna_alloc(sizeof(int) * (n4+1)); - in[i] = (int *) vrna_alloc(sizeof(int) * (n4+1)); + in [i] = (int *) vrna_alloc(sizeof(int) * (n4+1)); --- ViennaRNA-2.2.3/src/Kinfold/cache.c.orig 2017-02-28 14:16:36.074432301 +0100 +++ ViennaRNA-2.2.3/src/Kinfold/cache.c 2017-02-28 14:16:38.544493318 +0100 @@ -56,7 +56,6 @@