diff --git a/docs/release-notes.md b/docs/release-notes.md index 0ab869301..0d117cf83 100644 --- a/docs/release-notes.md +++ b/docs/release-notes.md @@ -6,10 +6,62 @@ search: # EasyBuild release notes {: #release_notes } The latest version of EasyBuild provides support for building and -installing [**3,656** different software packages](version-specific/supported-software/index.md), +installing [**3,670** different software packages](version-specific/supported-software/index.md), including 41 different (compiler) toolchains. It contains 259 software-specific easyblocks and 43 generic easyblocks, -alongside 20,561 easyconfig files. +alongside 20,670 easyconfig files. + + +## EasyBuild v4.9.4 (22 Sept 2024) {: #release_notes_eb494 } + +bugfix/update release + +**framework** + +- various enhancements, including: + - set `$LMOD_TERSE_DECORATIONS` to '`no`' to avoid additional info in output produced by '`ml --terse avail`' ([#4648](https://github.com/easybuilders/easybuild-framework/pull/4648)) +- various bug fixes, including: + - implement workaround for permission error when copying read-only files that have extended attributes set and using Python 3.6 ([#4642](https://github.com/easybuilders/easybuild-framework/pull/4642)) + - take into account alternate sysroot for `/bin/bash` used by `run_cmd` ([#4646](https://github.com/easybuilders/easybuild-framework/pull/4646)) + +**easyblocks** + +- various enhancements, including: + - allow Python bundles and packages to specify a maximum Python version for the system toolchain ([#3431](https://github.com/easybuilders/easybuild-easyblocks/pull/3431)) + - copy `EasyConfig` instance in constructor of `Bundle` and `Cargo` easyblocks before making changes to it ([#3448](https://github.com/easybuilders/easybuild-easyblocks/pull/3448)) + - fix crash in GCC easyblock when `cuda-compute-capabilities` EasyBuild configuration option is not set ([#3449](https://github.com/easybuilders/easybuild-easyblocks/pull/3449)) +- various bug fixes, including: + - ignore Python from virtualenvs in GROMACS configure via `-DPython3_FIND_VIRTUALENV=STANDARD` ([#3283](https://github.com/easybuilders/easybuild-easyblocks/pull/3283)) + - enhance custom easyblock for NCCL: add licence to NCCL installation ([#3451](https://github.com/easybuilders/easybuild-easyblocks/pull/3451)) + +**easyconfigs** + +- added example easyconfig files for 14 new software packages: + - Biotite ([#21026](https://github.com/easybuilders/easybuild-easyconfigs/pull/21026)), chopper ([#21418](https://github.com/easybuilders/easybuild-easyconfigs/pull/21418)), CLUMPP ([#21329](https://github.com/easybuilders/easybuild-easyconfigs/pull/21329)), cramino ([#21382](https://github.com/easybuilders/easybuild-easyconfigs/pull/21382)), dub ([#21378](https://github.com/easybuilders/easybuild-easyconfigs/pull/21378)), ESM3 ([#21026](https://github.com/easybuilders/easybuild-easyconfigs/pull/21026)), GOMC ([#21008](https://github.com/easybuilders/easybuild-easyconfigs/pull/21008)), + MOKIT ([#21352](https://github.com/easybuilders/easybuild-easyconfigs/pull/21352)), nanoQC ([#21371](https://github.com/easybuilders/easybuild-easyconfigs/pull/21371)), phasius ([#21389](https://github.com/easybuilders/easybuild-easyconfigs/pull/21389)), PyBullet ([#21356](https://github.com/easybuilders/easybuild-easyconfigs/pull/21356)), rnamotif ([#21336](https://github.com/easybuilders/easybuild-easyconfigs/pull/21336)), versioningit ([#21424](https://github.com/easybuilders/easybuild-easyconfigs/pull/21424)), + xskillscore ([#21351](https://github.com/easybuilders/easybuild-easyconfigs/pull/21351)) +- added additional easyconfigs for various supported software packages, including: + - awscli 2.17.54, BiG-SCAPE-1.1.9, ccache 4.10.2, CLHEP 2.4.7.1, CREST 3.0.2, decona 1.4-2024073, dftd4 3.7.0, + GATE 9.4, Gdk-Pixbuf 2.42.11, Geant4 11.2.2, Geant4-data 11.2, Ghostscript 10.03.1, GitPython 3.1.43, + GObject-Introspection 1.80.1, HarfBuzz 9.0.0, ImageMagick 7.1.1-38, JasPer 4.2.4, joypy 0.2.6, Julia 1.10.4, + LDC 1.39.0, Leptonica 1.84.1, Markdown 3.7, MPICH 4.2.2, NanoComp 1.24.0, nanoget 1.19.3, nanomath 1.4.0, + NanoPlot 1.43.0, Pango 1.54.0, PCAngsd 1.2, Pillow 10.4.0, python-isal 1.7.0, pocl 6.0, PROJ 9.4.1, protobuf 28.0, + protobuf-python 5.28.0, R-tesseract 5.2.1, RepeatMasker 4.1.7-p1, RHEIA 1.1.11, RMBlast 2.14.1, + scikit-build-core 0.10.6, sleuth 0.30.1, SNAP-ESA 10.0.0, tesseract 5.3.4, Triton 2.1.0, TurboVNC 3.1.2, + VirtualGL 3.1.1, zlib-ng 2.2.1 +- minor enhancements, including: + - enable support for Apache ORC to Arrow v14.0.1 and v16.1.0 ([#21056](https://github.com/easybuilders/easybuild-easyconfigs/pull/21056)) + - use proper dependency for tensorboard in easyconfigs for TensorFlow v2.15.1 ([#21337](https://github.com/easybuilders/easybuild-easyconfigs/pull/21337)) +- various bug fixes, including: + - account for crates for easyconfigs using Cargo-based easyblock when determining checksums for patches in easyconfigs test suite ([#21419](https://github.com/easybuilders/easybuild-easyconfigs/pull/21419)) + - avoid missing symbol in `mclust` extension of R-4.0.3 w/ foss/2020b ([#21429](https://github.com/easybuilders/easybuild-easyconfigs/pull/21429)) + - fix build of librosa 0.10.1 in some environments by removing "python -m build" for soxr extension ([#21434](https://github.com/easybuilders/easybuild-easyconfigs/pull/21434)) + - fix repeated sanity check runs in manta easyconfigs ([#21435](https://github.com/easybuilders/easybuild-easyconfigs/pull/21435)) + - fix `test_easyconfig_locations` when easyconfigs index is present ([#21394](https://github.com/easybuilders/easybuild-easyconfigs/pull/21394)) + - use proper dependency for libnsl in git-annex ([#21441](https://github.com/easybuilders/easybuild-easyconfigs/pull/21441)) + - avoid writing into `~/.stack` directory during build for git-annex ([#21452](https://github.com/easybuilders/easybuild-easyconfigs/pull/21452)) +- other changes: + - remove `exts_default_options` from TensorFlow 2.3.1 ([#21290](https://github.com/easybuilders/easybuild-easyconfigs/pull/21290)) ## EasyBuild v4.9.3 (14 Sept 2024) {: #release_notes_eb493 } @@ -31,7 +83,7 @@ bugfix/update release - add support for `--software-commit` and an associated template `%(software_commit)s` ([#4628](https://github.com/easybuilders/easybuild-framework/pull/4628)) - various bug fixes, including: - correctly evaluate result for `--dep-graph` ([#4554](https://github.com/easybuilders/easybuild-framework/pull/4554)) - - fix fetch progress bar showing to many files ([#4568](https://github.com/easybuilders/easybuild-framework/pull/4568)) + - fix fetch progress bar showing too many files ([#4568](https://github.com/easybuilders/easybuild-framework/pull/4568)) - resolve internal for imkl>=2021 version subdir via "latest" symlink ([#4570](https://github.com/easybuilders/easybuild-framework/pull/4570)) - fix typo in message about including an easyblock from a commit ([#4575](https://github.com/easybuilders/easybuild-framework/pull/4575)) - don't use special flags for `strict`, `precise`, `loose`, `veryloose` toolchain options on RISC-V ([#4576](https://github.com/easybuilders/easybuild-framework/pull/4576)) diff --git a/docs/version-specific/generic-easyblocks.md b/docs/version-specific/generic-easyblocks.md index 21a5b32aa..a3fa19d35 100644 --- a/docs/version-specific/generic-easyblocks.md +++ b/docs/version-specific/generic-easyblocks.md @@ -346,6 +346,8 @@ easyconfig parameter |description ``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` ``install_target`` |Option to pass to setup.py |``"install"`` ``install_target_subdir`` |Subdirectory to use as installation target |``None`` +``max_py_majver`` |Maximum major Python version (only relevant when using system Python) |``None`` +``max_py_minver`` |Maximum minor Python version (only relevant when using system Python) |``None`` ``options`` |Dictionary with extension options. |``{}`` ``pip_ignore_installed`` |Let pip ignore installed Python packages (i.e. don't remove them) |``True`` ``pip_no_index`` |Pass --no-index to pip to disable connecting to PyPi entirely which also disables the pip version check. Enabled by default when pip_ignore_installed=True |``None`` @@ -430,6 +432,8 @@ easyconfig parameter |description ``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` ``install_target`` |Option to pass to setup.py |``"install"`` ``lto`` |Override default LTO flag ('fat', 'thin', 'off') |``None`` +``max_py_majver`` |Maximum major Python version (only relevant when using system Python) |``None`` +``max_py_minver`` |Maximum minor Python version (only relevant when using system Python) |``None`` ``offline`` |Build offline |``True`` ``options`` |Dictionary with extension options. |``{}`` ``pip_ignore_installed`` |Let pip ignore installed Python packages (i.e. don't remove them) |``True`` @@ -474,6 +478,8 @@ easyconfig parameter |description ``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` ``install_target`` |Option to pass to setup.py |``"install"`` ``lto`` |Override default LTO flag ('fat', 'thin', 'off') |``None`` +``max_py_majver`` |Maximum major Python version (only relevant when using system Python) |``None`` +``max_py_minver`` |Maximum minor Python version (only relevant when using system Python) |``None`` ``offline`` |Build offline |``True`` ``options`` |Dictionary with extension options. |``{}`` ``pip_ignore_installed``|Let pip ignore installed Python packages (i.e. don't remove them) |``True`` @@ -657,6 +663,8 @@ easyconfig parameter |description ``install_cmd`` |Install command to use |``"make install"`` ``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` ``install_target`` |Option to pass to setup.py |``"install"`` +``max_py_majver`` |Maximum major Python version (only relevant when using system Python) |``None`` +``max_py_minver`` |Maximum minor Python version (only relevant when using system Python) |``None`` ``options`` |Dictionary with extension options. |``{}`` ``pip_ignore_installed`` |Let pip ignore installed Python packages (i.e. don't remove them) |``True`` ``pip_no_index`` |Pass --no-index to pip to disable connecting to PyPi entirely which also disables the pip version check. Enabled by default when pip_ignore_installed=True |``None`` @@ -758,6 +766,8 @@ easyconfig parameter |description ``download_dep_fail`` |Fail if downloaded dependencies are detected |``None`` ``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` ``install_target`` |Option to pass to setup.py |``"install"`` +``max_py_majver`` |Maximum major Python version (only relevant when using system Python) |``None`` +``max_py_minver`` |Maximum minor Python version (only relevant when using system Python) |``None`` ``options`` |Dictionary with extension options. |``{}`` ``pip_ignore_installed``|Let pip ignore installed Python packages (i.e. don't remove them) |``True`` ``pip_no_index`` |Pass --no-index to pip to disable connecting to PyPi entirely which also disables the pip version check. Enabled by default when pip_ignore_installed=True |``None`` @@ -1137,6 +1147,8 @@ easyconfig parameter |description ``download_dep_fail`` |Fail if downloaded dependencies are detected |``None`` ``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` ``install_target`` |Option to pass to setup.py |``"install"`` +``max_py_majver`` |Maximum major Python version (only relevant when using system Python) |``None`` +``max_py_minver`` |Maximum minor Python version (only relevant when using system Python) |``None`` ``options`` |Dictionary with extension options. |``{}`` ``pip_ignore_installed`` |Let pip ignore installed Python packages (i.e. don't remove them) |``True`` ``pip_no_index`` |Pass --no-index to pip to disable connecting to PyPi entirely which also disables the pip version check. Enabled by default when pip_ignore_installed=True |``None`` @@ -1173,6 +1185,8 @@ easyconfig parameter |description ``download_dep_fail`` |Fail if downloaded dependencies are detected |``None`` ``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` ``install_target`` |Option to pass to setup.py |``"install"`` +``max_py_majver`` |Maximum major Python version (only relevant when using system Python) |``None`` +``max_py_minver`` |Maximum minor Python version (only relevant when using system Python) |``None`` ``options`` |Dictionary with extension options. |``{}`` ``pip_ignore_installed``|Let pip ignore installed Python packages (i.e. don't remove them) |``True`` ``pip_no_index`` |Pass --no-index to pip to disable connecting to PyPi entirely which also disables the pip version check. Enabled by default when pip_ignore_installed=True |``None`` @@ -1465,6 +1479,8 @@ easyconfig parameter |description ``download_dep_fail`` |Fail if downloaded dependencies are detected |``None`` ``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` ``install_target`` |Option to pass to setup.py |``"install"`` +``max_py_majver`` |Maximum major Python version (only relevant when using system Python) |``None`` +``max_py_minver`` |Maximum minor Python version (only relevant when using system Python) |``None`` ``options`` |Dictionary with extension options. |``{}`` ``pip_ignore_installed``|Let pip ignore installed Python packages (i.e. don't remove them) |``True`` ``pip_no_index`` |Pass --no-index to pip to disable connecting to PyPi entirely which also disables the pip version check. Enabled by default when pip_ignore_installed=True |``None`` @@ -1499,6 +1515,8 @@ easyconfig parameter |description ``download_dep_fail`` |Fail if downloaded dependencies are detected |``None`` ``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` ``install_target`` |Option to pass to setup.py |``"install"`` +``max_py_majver`` |Maximum major Python version (only relevant when using system Python) |``None`` +``max_py_minver`` |Maximum minor Python version (only relevant when using system Python) |``None`` ``options`` |Dictionary with extension options. |``{}`` ``pip_ignore_installed``|Let pip ignore installed Python packages (i.e. don't remove them) |``True`` ``pip_no_index`` |Pass --no-index to pip to disable connecting to PyPi entirely which also disables the pip version check. Enabled by default when pip_ignore_installed=True |``None`` diff --git a/docs/version-specific/supported-software/a/ATK.md b/docs/version-specific/supported-software/a/ATK.md index de5fc9cfb..f7d53bea2 100644 --- a/docs/version-specific/supported-software/a/ATK.md +++ b/docs/version-specific/supported-software/a/ATK.md @@ -34,6 +34,7 @@ version | toolchain ``2.38.0`` | ``GCCcore/12.2.0`` ``2.38.0`` | ``GCCcore/12.3.0`` ``2.38.0`` | ``GCCcore/13.2.0`` +``2.38.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/awscli.md b/docs/version-specific/supported-software/a/awscli.md index 7c6efe656..35b73b792 100644 --- a/docs/version-specific/supported-software/a/awscli.md +++ b/docs/version-specific/supported-software/a/awscli.md @@ -18,6 +18,7 @@ version | versionsuffix | toolchain ``2.0.55`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` ``2.11.21`` | | ``GCCcore/11.3.0`` ``2.15.2`` | | ``GCCcore/12.2.0`` +``2.17.54`` | | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BiG-SCAPE.md b/docs/version-specific/supported-software/b/BiG-SCAPE.md index 66ffe9e00..bd7ae6589 100644 --- a/docs/version-specific/supported-software/b/BiG-SCAPE.md +++ b/docs/version-specific/supported-software/b/BiG-SCAPE.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``1.0.1`` | ``-Python-3.7.4`` | ``intel/2019b`` ``1.1.5`` | | ``foss/2022a`` +``1.1.9`` | | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/Biotite.md b/docs/version-specific/supported-software/b/Biotite.md new file mode 100644 index 000000000..b0d3bad16 --- /dev/null +++ b/docs/version-specific/supported-software/b/Biotite.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Biotite + +Biotite is your Swiss army knife for bioinformatics. Whether you want to identify homologous sequence regions in a protein family or you would like to find disulfide bonds in a protein structure: Biotite has the right tool for you. This package bundles popular tasks in computational molecular biology into a uniform Python library. + +*homepage*: + +version | toolchain +--------|---------- +``0.41.0`` | ``gfbf/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/b/index.md b/docs/version-specific/supported-software/b/index.md index a9474aba4..a9e34eab2 100644 --- a/docs/version-specific/supported-software/b/index.md +++ b/docs/version-specific/supported-software/b/index.md @@ -93,6 +93,7 @@ search: * [BioPP](BioPP.md) * [Biopython](Biopython.md) * [BioServices](BioServices.md) + * [Biotite](Biotite.md) * [BirdNET](BirdNET.md) * [biscuit](biscuit.md) * [Bismark](Bismark.md) diff --git a/docs/version-specific/supported-software/c/CAMPARI.md b/docs/version-specific/supported-software/c/CAMPARI.md index af66b36d8..2f67b734d 100644 --- a/docs/version-specific/supported-software/c/CAMPARI.md +++ b/docs/version-specific/supported-software/c/CAMPARI.md @@ -10,6 +10,7 @@ CAMPARI is a joint package for performing and analyzing molecular simulations, i version | toolchain --------|---------- +``4.0`` | ``foss/2023a`` ``4.0`` | ``intel/2020b`` ``4.0`` | ``intel/2023a`` diff --git a/docs/version-specific/supported-software/c/CLHEP.md b/docs/version-specific/supported-software/c/CLHEP.md index 30d178b74..c4a7e19d0 100644 --- a/docs/version-specific/supported-software/c/CLHEP.md +++ b/docs/version-specific/supported-software/c/CLHEP.md @@ -29,6 +29,7 @@ version | toolchain ``2.4.5.3`` | ``GCC/11.3.0`` ``2.4.6.2`` | ``GCC/11.3.0`` ``2.4.6.4`` | ``GCC/12.2.0`` +``2.4.7.1`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CLUMPP.md b/docs/version-specific/supported-software/c/CLUMPP.md new file mode 100644 index 000000000..8bf7d998c --- /dev/null +++ b/docs/version-specific/supported-software/c/CLUMPP.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# CLUMPP + +CLUMPP is a program that deals with label switching and multimodality problems in population-genetic cluster analyses. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``1.1.2`` | ``-Linux64`` | ``system`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/c/CREST.md b/docs/version-specific/supported-software/c/CREST.md index 8cf10c8b4..d3a1de62c 100644 --- a/docs/version-specific/supported-software/c/CREST.md +++ b/docs/version-specific/supported-software/c/CREST.md @@ -13,9 +13,10 @@ version | toolchain ``2.11`` | ``intel/2021a`` ``2.11.2`` | ``intel/2021a`` ``2.12`` | ``gfbf/2023a`` +``2.12`` | ``gfbf/2023b`` ``2.12`` | ``intel/2022a`` -``20240319`` | ``gfbf/2023a`` ``3.0.1`` | ``gfbf/2022b`` +``3.0.2`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CellRank.md b/docs/version-specific/supported-software/c/CellRank.md index ad905247a..0709a4205 100644 --- a/docs/version-specific/supported-software/c/CellRank.md +++ b/docs/version-specific/supported-software/c/CellRank.md @@ -8,10 +8,11 @@ CellRank is a toolkit to uncover cellular dynamics based on Markov state modeli *homepage*: -version | toolchain ---------|---------- -``1.4.0`` | ``foss/2021a`` -``2.0.2`` | ``foss/2023a`` +version | versionsuffix | toolchain +--------|---------------|---------- +``1.4.0`` | | ``foss/2021a`` +``2.0.2`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``2.0.2`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/Clang.md b/docs/version-specific/supported-software/c/Clang.md index 40b368a32..d95a9ddaf 100644 --- a/docs/version-specific/supported-software/c/Clang.md +++ b/docs/version-specific/supported-software/c/Clang.md @@ -27,6 +27,7 @@ version | versionsuffix | toolchain ``16.0.4`` | | ``GCCcore/12.2.0`` ``16.0.6`` | ``-CUDA-12.1.1`` | ``GCCcore/12.3.0`` ``16.0.6`` | | ``GCCcore/12.3.0`` +``17.0.0_20230515`` | ``-CUDA-12.1.1`` | ``GCCcore/12.3.0`` ``17.0.6`` | | ``GCCcore/13.2.0`` ``18.1.8`` | | ``GCCcore/13.3.0`` ``3.3`` | | ``GCC/4.8.1`` diff --git a/docs/version-specific/supported-software/c/ccache.md b/docs/version-specific/supported-software/c/ccache.md index 41d13a5b3..3805f7929 100644 --- a/docs/version-specific/supported-software/c/ccache.md +++ b/docs/version-specific/supported-software/c/ccache.md @@ -15,6 +15,7 @@ version | versionsuffix | toolchain ``3.3.3`` | | ``system`` ``3.3.4`` | ``-f90`` | ``system`` ``3.7.11`` | | ``system`` +``4.10.2`` | | ``GCCcore/13.3.0`` ``4.2.1`` | | ``system`` ``4.6.1`` | | ``GCCcore/11.2.0`` ``4.6.3`` | | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/c/chopper.md b/docs/version-specific/supported-software/c/chopper.md new file mode 100644 index 000000000..714ae575c --- /dev/null +++ b/docs/version-specific/supported-software/c/chopper.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# chopper + +Rust implementation of NanoFilt+NanoLyse, both originally written in Python. This tool, intended for long read sequencing such as PacBio or ONT, filters and trims a fastq file. Filtering is done on average read quality and minimal or maximal read length, and applying a headcrop (start of read) and tailcrop (end of read) while printing the reads passing the filter. + +*homepage*: + +version | toolchain +--------|---------- +``0.9.0`` | ``GCCcore/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/c/cramino.md b/docs/version-specific/supported-software/c/cramino.md new file mode 100644 index 000000000..543febf5d --- /dev/null +++ b/docs/version-specific/supported-software/c/cramino.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# cramino + +A tool for quick quality assessment of cram and bam files, intended for long read sequencing. + +*homepage*: + +version | toolchain +--------|---------- +``0.14.5`` | ``GCC/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/c/index.md b/docs/version-specific/supported-software/c/index.md index e24808e37..75be9ccde 100644 --- a/docs/version-specific/supported-software/c/index.md +++ b/docs/version-specific/supported-software/c/index.md @@ -112,6 +112,7 @@ search: * [Chimera](Chimera.md) * [ChimPipe](ChimPipe.md) * [ChIPseeker](ChIPseeker.md) + * [chopper](chopper.md) * [Chromaprint](Chromaprint.md) * [chromVARmotifs](chromVARmotifs.md) * [cicero](cicero.md) @@ -145,6 +146,7 @@ search: * [CLooG](CLooG.md) * [CloudCompare](CloudCompare.md) * [Clp](Clp.md) + * [CLUMPP](CLUMPP.md) * [Clustal-Omega](Clustal-Omega.md) * [ClustalW2](ClustalW2.md) * [Cluster-Buster](Cluster-Buster.md) @@ -217,6 +219,7 @@ search: * [cppzmq](cppzmq.md) * [cpu_features](cpu_features.md) * [cram](cram.md) + * [cramino](cramino.md) * [cramtools](cramtools.md) * [CrayCCE](CrayCCE.md) * [CrayGNU](CrayGNU.md) diff --git a/docs/version-specific/supported-software/d/DFTB+.md b/docs/version-specific/supported-software/d/DFTB+.md index f402a4347..7df03d620 100644 --- a/docs/version-specific/supported-software/d/DFTB+.md +++ b/docs/version-specific/supported-software/d/DFTB+.md @@ -15,6 +15,7 @@ version | versionsuffix | toolchain ``19.1`` | ``-Python-2.7.16-mpi`` | ``foss/2019b`` ``19.1`` | ``-Python-2.7.16`` | ``foss/2019b`` ``21.1`` | | ``intel/2021a`` +``24.1`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/decona.md b/docs/version-specific/supported-software/d/decona.md index 2bb1792da..9eeed7ed0 100644 --- a/docs/version-specific/supported-software/d/decona.md +++ b/docs/version-specific/supported-software/d/decona.md @@ -11,6 +11,7 @@ fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanop version | versionsuffix | toolchain --------|---------------|---------- ``0.1.2`` | ``-Python-3.7.4`` | ``foss/2019b`` +``1.4-20240731`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/dftd4.md b/docs/version-specific/supported-software/d/dftd4.md index d5b0fbcb5..5ac23f721 100644 --- a/docs/version-specific/supported-software/d/dftd4.md +++ b/docs/version-specific/supported-software/d/dftd4.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``3.4.0`` | ``gfbf/2022b`` ``3.4.0`` | ``iimkl/2022b`` +``3.7.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/dub.md b/docs/version-specific/supported-software/d/dub.md new file mode 100644 index 000000000..97ce33376 --- /dev/null +++ b/docs/version-specific/supported-software/d/dub.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# dub + +Package and build manager for D applications and libraries + +*homepage*: + +version | toolchain +--------|---------- +``1.38.1`` | ``GCCcore/13.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/d/index.md b/docs/version-specific/supported-software/d/index.md index 79e340930..04b3b9f68 100644 --- a/docs/version-specific/supported-software/d/index.md +++ b/docs/version-specific/supported-software/d/index.md @@ -126,6 +126,7 @@ search: * [dtcmp](dtcmp.md) * [dtcwt](dtcwt.md) * [DualSPHysics](DualSPHysics.md) + * [dub](dub.md) * [DUBStepR](DUBStepR.md) * [dune-core](dune-core.md) * [dune-fem](dune-fem.md) diff --git a/docs/version-specific/supported-software/e/ELSI.md b/docs/version-specific/supported-software/e/ELSI.md index 2617778d9..28d426b28 100644 --- a/docs/version-specific/supported-software/e/ELSI.md +++ b/docs/version-specific/supported-software/e/ELSI.md @@ -10,6 +10,7 @@ ELSI provides and enhances scalable, open-source software library solutions for version | versionsuffix | toolchain --------|---------------|---------- +``2.11.0`` | ``-PEXSI`` | ``foss/2023a`` ``2.5.0`` | ``-PEXSI`` | ``foss/2019b`` ``2.5.0`` | | ``foss/2019b`` ``2.5.0`` | ``-PEXSI`` | ``intel/2019b`` @@ -18,6 +19,7 @@ version | versionsuffix | toolchain ``2.6.4`` | ``-PEXSI`` | ``intel/2020b`` ``2.7.1`` | ``-PEXSI`` | ``foss/2021a`` ``2.7.1`` | ``-PEXSI`` | ``intel/2021a`` +``2.9.1`` | ``-PEXSI`` | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/ESM3.md b/docs/version-specific/supported-software/e/ESM3.md new file mode 100644 index 000000000..23782e11f --- /dev/null +++ b/docs/version-specific/supported-software/e/ESM3.md @@ -0,0 +1,18 @@ +--- +search: + boost: 0.5 +--- +# ESM3 + +ESM3 is a frontier generative model for biology, able to jointly reason across three fundamental biological properties of proteins: sequence, structure, and function. These three data modalities are represented as tracks of discrete tokens at the input and output of ESM3. You can present the model with a combination of partial inputs across the tracks, and ESM3 will provide output predictions for all the tracks. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``3.0.0.post2`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``3.0.0.post2`` | | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/e/EasyBuild.md b/docs/version-specific/supported-software/e/EasyBuild.md index c5e930f5f..6accf5527 100644 --- a/docs/version-specific/supported-software/e/EasyBuild.md +++ b/docs/version-specific/supported-software/e/EasyBuild.md @@ -112,6 +112,7 @@ version | toolchain ``4.9.0`` | ``system`` ``4.9.1`` | ``system`` ``4.9.2`` | ``system`` +``4.9.3`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/index.md b/docs/version-specific/supported-software/e/index.md index 6ee528c80..28f225ace 100644 --- a/docs/version-specific/supported-software/e/index.md +++ b/docs/version-specific/supported-software/e/index.md @@ -72,6 +72,7 @@ search: * [ESIpy](ESIpy.md) * [ESL-Bundle](ESL-Bundle.md) * [ESM-2](ESM-2.md) + * [ESM3](ESM3.md) * [ESMF](ESMF.md) * [ESMPy](ESMPy.md) * [ESMValTool](ESMValTool.md) diff --git a/docs/version-specific/supported-software/f/FastTree.md b/docs/version-specific/supported-software/f/FastTree.md index 665a36919..e27f03229 100644 --- a/docs/version-specific/supported-software/f/FastTree.md +++ b/docs/version-specific/supported-software/f/FastTree.md @@ -20,6 +20,7 @@ version | toolchain ``2.1.11`` | ``GCCcore/11.3.0`` ``2.1.11`` | ``GCCcore/12.2.0`` ``2.1.11`` | ``GCCcore/12.3.0`` +``2.1.11`` | ``GCCcore/13.2.0`` ``2.1.11`` | ``GCCcore/8.2.0`` ``2.1.11`` | ``GCCcore/8.3.0`` ``2.1.11`` | ``GCCcore/9.3.0`` diff --git a/docs/version-specific/supported-software/g/GATE.md b/docs/version-specific/supported-software/g/GATE.md index 5d066577a..c20596d4c 100644 --- a/docs/version-specific/supported-software/g/GATE.md +++ b/docs/version-specific/supported-software/g/GATE.md @@ -24,6 +24,7 @@ version | versionsuffix | toolchain ``9.1`` | | ``foss/2021b`` ``9.2`` | | ``foss/2021b`` ``9.2`` | | ``foss/2022a`` +``9.4`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GOMC.md b/docs/version-specific/supported-software/g/GOMC.md new file mode 100644 index 000000000..ffae4a275 --- /dev/null +++ b/docs/version-specific/supported-software/g/GOMC.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# GOMC + +GPU Optimized Monte Carlo (GOMC) is a parallel molecular simulation code designed for high-performance simulation of large systems. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``2.76-20230613`` | ``-CUDA-11.7.0`` | ``GCC/11.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/g/GObject-Introspection.md b/docs/version-specific/supported-software/g/GObject-Introspection.md index 6a35274ff..0fe4d18ae 100644 --- a/docs/version-specific/supported-software/g/GObject-Introspection.md +++ b/docs/version-specific/supported-software/g/GObject-Introspection.md @@ -37,6 +37,7 @@ version | versionsuffix | toolchain ``1.74.0`` | | ``GCCcore/12.2.0`` ``1.76.1`` | | ``GCCcore/12.3.0`` ``1.78.1`` | | ``GCCcore/13.2.0`` +``1.80.1`` | | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/Gdk-Pixbuf.md b/docs/version-specific/supported-software/g/Gdk-Pixbuf.md index 51c1f094d..f42fd868d 100644 --- a/docs/version-specific/supported-software/g/Gdk-Pixbuf.md +++ b/docs/version-specific/supported-software/g/Gdk-Pixbuf.md @@ -31,6 +31,7 @@ version | toolchain ``2.42.10`` | ``GCCcore/12.2.0`` ``2.42.10`` | ``GCCcore/12.3.0`` ``2.42.10`` | ``GCCcore/13.2.0`` +``2.42.11`` | ``GCCcore/13.3.0`` ``2.42.6`` | ``GCCcore/10.3.0`` ``2.42.6`` | ``GCCcore/11.2.0`` ``2.42.8`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/g/Geant4-data.md b/docs/version-specific/supported-software/g/Geant4-data.md index d93869827..a2507167f 100644 --- a/docs/version-specific/supported-software/g/Geant4-data.md +++ b/docs/version-specific/supported-software/g/Geant4-data.md @@ -11,6 +11,7 @@ Datasets for Geant4. version | toolchain --------|---------- ``11.1`` | ``system`` +``11.2`` | ``system`` ``20201103`` | ``system`` ``20210510`` | ``system`` diff --git a/docs/version-specific/supported-software/g/Geant4.md b/docs/version-specific/supported-software/g/Geant4.md index b324369c0..422b28cc3 100644 --- a/docs/version-specific/supported-software/g/Geant4.md +++ b/docs/version-specific/supported-software/g/Geant4.md @@ -28,6 +28,7 @@ version | toolchain ``11.0.2`` | ``GCC/11.2.0`` ``11.0.2`` | ``GCC/11.3.0`` ``11.1.2`` | ``GCC/11.3.0`` +``11.2.2`` | ``GCC/12.3.0`` ``9.5.p02`` | ``intel/2016a`` ``9.6.p04`` | ``intel/2016a`` diff --git a/docs/version-specific/supported-software/g/Ghostscript.md b/docs/version-specific/supported-software/g/Ghostscript.md index a57cc094f..8754ad8bd 100644 --- a/docs/version-specific/supported-software/g/Ghostscript.md +++ b/docs/version-specific/supported-software/g/Ghostscript.md @@ -13,6 +13,7 @@ version | versionsuffix | toolchain ``10.0.0`` | | ``GCCcore/12.2.0`` ``10.01.2`` | | ``GCCcore/12.3.0`` ``10.02.1`` | | ``GCCcore/13.2.0`` +``10.03.1`` | | ``GCCcore/13.3.0`` ``9.19`` | | ``intel/2016a`` ``9.19`` | | ``intel/2016b`` ``9.20`` | | ``foss/2016b`` diff --git a/docs/version-specific/supported-software/g/GitPython.md b/docs/version-specific/supported-software/g/GitPython.md index fcefc9d6c..d3c74cd15 100644 --- a/docs/version-specific/supported-software/g/GitPython.md +++ b/docs/version-specific/supported-software/g/GitPython.md @@ -22,6 +22,7 @@ version | versionsuffix | toolchain ``3.1.31`` | | ``GCCcore/12.2.0`` ``3.1.40`` | | ``GCCcore/12.3.0`` ``3.1.42`` | | ``GCCcore/13.2.0`` +``3.1.43`` | | ``GCCcore/13.3.0`` ``3.1.9`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` diff --git a/docs/version-specific/supported-software/g/gffread.md b/docs/version-specific/supported-software/g/gffread.md index d1b59a60c..0144c9499 100644 --- a/docs/version-specific/supported-software/g/gffread.md +++ b/docs/version-specific/supported-software/g/gffread.md @@ -16,6 +16,7 @@ version | toolchain ``0.12.7`` | ``GCCcore/10.3.0`` ``0.12.7`` | ``GCCcore/11.2.0`` ``0.12.7`` | ``GCCcore/12.2.0`` +``0.12.7`` | ``GCCcore/12.3.0`` ``0.9.12`` | ``foss/2016b`` diff --git a/docs/version-specific/supported-software/g/giflib.md b/docs/version-specific/supported-software/g/giflib.md index 69e45676d..a4243e19c 100644 --- a/docs/version-specific/supported-software/g/giflib.md +++ b/docs/version-specific/supported-software/g/giflib.md @@ -22,6 +22,7 @@ version | toolchain ``5.2.1`` | ``GCCcore/13.3.0`` ``5.2.1`` | ``GCCcore/8.3.0`` ``5.2.1`` | ``GCCcore/9.3.0`` +``5.2.2`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/index.md b/docs/version-specific/supported-software/g/index.md index fdd80c671..7b08d8c43 100644 --- a/docs/version-specific/supported-software/g/index.md +++ b/docs/version-specific/supported-software/g/index.md @@ -173,6 +173,7 @@ search: * [Godon](Godon.md) * [gofasta](gofasta.md) * [golf](golf.md) + * [GOMC](GOMC.md) * [gomkl](gomkl.md) * [gompi](gompi.md) * [gompic](gompic.md) diff --git a/docs/version-specific/supported-software/h/HMMER.md b/docs/version-specific/supported-software/h/HMMER.md index 190454e8d..b84af1e19 100644 --- a/docs/version-specific/supported-software/h/HMMER.md +++ b/docs/version-specific/supported-software/h/HMMER.md @@ -36,6 +36,7 @@ version | toolchain ``3.3.2`` | ``iimpi/2020b`` ``3.3.2`` | ``iimpi/2021b`` ``3.4`` | ``gompi/2023a`` +``3.4`` | ``gompi/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/HarfBuzz.md b/docs/version-specific/supported-software/h/HarfBuzz.md index 5ab196eaa..0385102e7 100644 --- a/docs/version-specific/supported-software/h/HarfBuzz.md +++ b/docs/version-specific/supported-software/h/HarfBuzz.md @@ -35,6 +35,7 @@ version | toolchain ``5.3.1`` | ``GCCcore/12.2.0`` ``5.3.1`` | ``GCCcore/12.3.0`` ``8.2.2`` | ``GCCcore/13.2.0`` +``9.0.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/IJulia.md b/docs/version-specific/supported-software/i/IJulia.md index 7281853cf..89e13b12a 100644 --- a/docs/version-specific/supported-software/i/IJulia.md +++ b/docs/version-specific/supported-software/i/IJulia.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``1.23.3`` | ``-Julia-1.6.7`` | ``system`` ``1.24.0`` | ``-Julia-1.8.5`` | ``system`` +``1.24.2`` | ``-Julia-1.10.3`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/ISA-L.md b/docs/version-specific/supported-software/i/ISA-L.md index 2feeaa5b1..035740ff4 100644 --- a/docs/version-specific/supported-software/i/ISA-L.md +++ b/docs/version-specific/supported-software/i/ISA-L.md @@ -17,6 +17,7 @@ version | toolchain ``2.30.0`` | ``GCCcore/12.2.0`` ``2.30.0`` | ``GCCcore/12.3.0`` ``2.31.0`` | ``GCCcore/13.2.0`` +``2.31.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/ImageMagick.md b/docs/version-specific/supported-software/i/ImageMagick.md index e4f7c20d4..f8d984aa7 100644 --- a/docs/version-specific/supported-software/i/ImageMagick.md +++ b/docs/version-specific/supported-software/i/ImageMagick.md @@ -36,6 +36,7 @@ version | versionsuffix | toolchain ``7.1.0-53`` | | ``GCCcore/12.2.0`` ``7.1.1-15`` | | ``GCCcore/12.3.0`` ``7.1.1-34`` | | ``GCCcore/13.2.0`` +``7.1.1-38`` | | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/index.md b/docs/version-specific/supported-software/index.md index b7f574138..c8d57b9d5 100644 --- a/docs/version-specific/supported-software/index.md +++ b/docs/version-specific/supported-software/index.md @@ -6,7 +6,7 @@ search: *(quick links: [0](./0/index.md) - [a](./a/index.md) - [b](./b/index.md) - [c](./c/index.md) - [d](./d/index.md) - [e](./e/index.md) - [f](./f/index.md) - [g](./g/index.md) - [h](./h/index.md) - [i](./i/index.md) - [j](./j/index.md) - [k](./k/index.md) - [l](./l/index.md) - [m](./m/index.md) - [n](./n/index.md) - [o](./o/index.md) - [p](./p/index.md) - [q](./q/index.md) - [r](./r/index.md) - [s](./s/index.md) - [t](./t/index.md) - [u](./u/index.md) - [v](./v/index.md) - [w](./w/index.md) - [x](./x/index.md) - [y](./y/index.md) - [z](./z/index.md))* -EasyBuild supports 3656 different software packages (incl. toolchains, bundles): +EasyBuild supports 3670 different software packages (incl. toolchains, bundles): * [0](0/index.md) * [3d-dna](0/3d-dna.md) @@ -273,6 +273,7 @@ EasyBuild supports 3656 different software packages (incl. toolchains, bundles): * [BioPP](b/BioPP.md) * [Biopython](b/Biopython.md) * [BioServices](b/BioServices.md) + * [Biotite](b/Biotite.md) * [BirdNET](b/BirdNET.md) * [biscuit](b/biscuit.md) * [Bismark](b/Bismark.md) @@ -456,6 +457,7 @@ EasyBuild supports 3656 different software packages (incl. toolchains, bundles): * [Chimera](c/Chimera.md) * [ChimPipe](c/ChimPipe.md) * [ChIPseeker](c/ChIPseeker.md) + * [chopper](c/chopper.md) * [Chromaprint](c/Chromaprint.md) * [chromVARmotifs](c/chromVARmotifs.md) * [cicero](c/cicero.md) @@ -489,6 +491,7 @@ EasyBuild supports 3656 different software packages (incl. toolchains, bundles): * [CLooG](c/CLooG.md) * [CloudCompare](c/CloudCompare.md) * [Clp](c/Clp.md) + * [CLUMPP](c/CLUMPP.md) * [Clustal-Omega](c/Clustal-Omega.md) * [ClustalW2](c/ClustalW2.md) * [Cluster-Buster](c/Cluster-Buster.md) @@ -561,6 +564,7 @@ EasyBuild supports 3656 different software packages (incl. toolchains, bundles): * [cppzmq](c/cppzmq.md) * [cpu_features](c/cpu_features.md) * [cram](c/cram.md) + * [cramino](c/cramino.md) * [cramtools](c/cramtools.md) * [CrayCCE](c/CrayCCE.md) * [CrayGNU](c/CrayGNU.md) @@ -748,6 +752,7 @@ EasyBuild supports 3656 different software packages (incl. toolchains, bundles): * [dtcmp](d/dtcmp.md) * [dtcwt](d/dtcwt.md) * [DualSPHysics](d/DualSPHysics.md) + * [dub](d/dub.md) * [DUBStepR](d/DUBStepR.md) * [dune-core](d/dune-core.md) * [dune-fem](d/dune-fem.md) @@ -821,6 +826,7 @@ EasyBuild supports 3656 different software packages (incl. toolchains, bundles): * [ESIpy](e/ESIpy.md) * [ESL-Bundle](e/ESL-Bundle.md) * [ESM-2](e/ESM-2.md) + * [ESM3](e/ESM3.md) * [ESMF](e/ESMF.md) * [ESMPy](e/ESMPy.md) * [ESMValTool](e/ESMValTool.md) @@ -1191,6 +1197,7 @@ EasyBuild supports 3656 different software packages (incl. toolchains, bundles): * [Godon](g/Godon.md) * [gofasta](g/gofasta.md) * [golf](g/golf.md) + * [GOMC](g/GOMC.md) * [gomkl](g/gomkl.md) * [gompi](g/gompi.md) * [gompic](g/gompic.md) @@ -2016,6 +2023,7 @@ EasyBuild supports 3656 different software packages (incl. toolchains, bundles): * [MODFLOW](m/MODFLOW.md) * [modred](m/modred.md) * [MOFA2](m/MOFA2.md) + * [MOKIT](m/MOKIT.md) * [Molcas](m/Molcas.md) * [mold](m/mold.md) * [Molden](m/Molden.md) @@ -2123,6 +2131,7 @@ EasyBuild supports 3656 different software packages (incl. toolchains, bundles): * [NanoPlot](n/NanoPlot.md) * [nanopolish](n/nanopolish.md) * [NanopolishComp](n/NanopolishComp.md) + * [nanoQC](n/nanoQC.md) * [NanoStat](n/NanoStat.md) * [napari](n/napari.md) * [napari-denoiseg](n/napari-denoiseg.md) @@ -2428,6 +2437,7 @@ EasyBuild supports 3656 different software packages (incl. toolchains, bundles): * [PHANOTATE](p/PHANOTATE.md) * [Phantompeakqualtools](p/Phantompeakqualtools.md) * [PHASE](p/PHASE.md) + * [phasius](p/phasius.md) * [PHAST](p/PHAST.md) * [Phenoflow](p/Phenoflow.md) * [PheWAS](p/PheWAS.md) @@ -2607,6 +2617,7 @@ EasyBuild supports 3656 different software packages (incl. toolchains, bundles): * [pybind11-stubgen](p/pybind11-stubgen.md) * [pybinding](p/pybinding.md) * [PyBioLib](p/PyBioLib.md) + * [PyBullet](p/PyBullet.md) * [PyCairo](p/PyCairo.md) * [PyCalib](p/PyCalib.md) * [pyccel](p/pyccel.md) @@ -2933,6 +2944,7 @@ EasyBuild supports 3656 different software packages (incl. toolchains, bundles): * [RNAcode](r/RNAcode.md) * [RNAIndel](r/RNAIndel.md) * [RNAmmer](r/RNAmmer.md) + * [rnamotif](r/rnamotif.md) * [rnaQUAST](r/rnaQUAST.md) * [RNAz](r/RNAz.md) * [RnBeads](r/RnBeads.md) @@ -3525,6 +3537,7 @@ EasyBuild supports 3656 different software packages (incl. toolchains, bundles): * [VEP](v/VEP.md) * [verifyBamID](v/verifyBamID.md) * [VERSE](v/VERSE.md) + * [versioningit](v/versioningit.md) * [VESTA](v/VESTA.md) * [ViennaRNA](v/ViennaRNA.md) * [vigra](v/vigra.md) @@ -3645,6 +3658,7 @@ EasyBuild supports 3656 different software packages (incl. toolchains, bundles): * [xprop](x/xprop.md) * [xproto](x/xproto.md) * [XSD](x/XSD.md) + * [xskillscore](x/xskillscore.md) * [XTandem](x/XTandem.md) * [xtb](x/xtb.md) * [xtb-IFF](x/xtb-IFF.md) diff --git a/docs/version-specific/supported-software/j/JasPer.md b/docs/version-specific/supported-software/j/JasPer.md index 9497843cb..9b6d79666 100644 --- a/docs/version-specific/supported-software/j/JasPer.md +++ b/docs/version-specific/supported-software/j/JasPer.md @@ -36,6 +36,7 @@ version | toolchain ``4.0.0`` | ``GCCcore/12.2.0`` ``4.0.0`` | ``GCCcore/12.3.0`` ``4.0.0`` | ``GCCcore/13.2.0`` +``4.2.4`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/j/Julia.md b/docs/version-specific/supported-software/j/Julia.md index 56f0f67c2..e9bc9823f 100644 --- a/docs/version-specific/supported-software/j/Julia.md +++ b/docs/version-specific/supported-software/j/Julia.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``1.1.1`` | ``-linux-x86_64`` | ``system`` ``1.10.0`` | ``-linux-x86_64`` | ``system`` +``1.10.3`` | ``-linux-x86_64`` | ``system`` ``1.10.4`` | ``-linux-x86_64`` | ``system`` ``1.2.0`` | ``-linux-x86_64`` | ``system`` ``1.3.1`` | ``-linux-x86_64`` | ``system`` diff --git a/docs/version-specific/supported-software/j/joypy.md b/docs/version-specific/supported-software/j/joypy.md index b946aa011..c6b6efc56 100644 --- a/docs/version-specific/supported-software/j/joypy.md +++ b/docs/version-specific/supported-software/j/joypy.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``0.2.2`` | ``-Python-3.7.4`` | ``intel/2019b`` ``0.2.4`` | | ``intel/2020b`` +``0.2.6`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/j/json-fortran.md b/docs/version-specific/supported-software/j/json-fortran.md index 82461db70..5da233338 100644 --- a/docs/version-specific/supported-software/j/json-fortran.md +++ b/docs/version-specific/supported-software/j/json-fortran.md @@ -21,6 +21,7 @@ version | toolchain ``8.3.0`` | ``intel-compilers/2022.2.1`` ``8.5.2`` | ``GCC/13.2.0`` ``8.5.2`` | ``intel-compilers/2023.2.1`` +``9.0.2`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/LDC.md b/docs/version-specific/supported-software/l/LDC.md index 1e0a1d099..0e1af9a9c 100644 --- a/docs/version-specific/supported-software/l/LDC.md +++ b/docs/version-specific/supported-software/l/LDC.md @@ -16,6 +16,7 @@ version | versionsuffix | toolchain ``1.26.0`` | | ``GCCcore/10.3.0`` ``1.30.0`` | | ``GCCcore/11.3.0`` ``1.36.0`` | | ``GCCcore/12.3.0`` +``1.39.0`` | | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/Leptonica.md b/docs/version-specific/supported-software/l/Leptonica.md index d09b4b4db..7133638a7 100644 --- a/docs/version-specific/supported-software/l/Leptonica.md +++ b/docs/version-specific/supported-software/l/Leptonica.md @@ -14,6 +14,7 @@ version | toolchain ``1.78.0`` | ``GCCcore/8.2.0`` ``1.82.0`` | ``GCCcore/10.3.0`` ``1.83.0`` | ``GCCcore/11.3.0`` +``1.84.1`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libGLU.md b/docs/version-specific/supported-software/l/libGLU.md index 4baf0c863..0c05592db 100644 --- a/docs/version-specific/supported-software/l/libGLU.md +++ b/docs/version-specific/supported-software/l/libGLU.md @@ -40,6 +40,7 @@ version | versionsuffix | toolchain ``9.0.2`` | | ``GCCcore/12.2.0`` ``9.0.3`` | | ``GCCcore/12.3.0`` ``9.0.3`` | | ``GCCcore/13.2.0`` +``9.0.3`` | | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libmbd.md b/docs/version-specific/supported-software/l/libmbd.md index 8d403dc09..22fda20de 100644 --- a/docs/version-specific/supported-software/l/libmbd.md +++ b/docs/version-specific/supported-software/l/libmbd.md @@ -14,6 +14,8 @@ version | toolchain ``0.10.4`` | ``foss/2021a`` ``0.10.4`` | ``intel/2020b`` ``0.10.4`` | ``intel/2021a`` +``0.12.6`` | ``foss/2022a`` +``0.12.6`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libnsl.md b/docs/version-specific/supported-software/l/libnsl.md index c2453b8d6..2b75f2440 100644 --- a/docs/version-specific/supported-software/l/libnsl.md +++ b/docs/version-specific/supported-software/l/libnsl.md @@ -14,6 +14,7 @@ version | toolchain ``2.0.0`` | ``GCCcore/11.3.0`` ``2.0.0`` | ``GCCcore/12.2.0`` ``2.0.1`` | ``GCCcore/12.3.0`` +``2.0.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libtirpc.md b/docs/version-specific/supported-software/l/libtirpc.md index b489b1d29..cdcdb55db 100644 --- a/docs/version-specific/supported-software/l/libtirpc.md +++ b/docs/version-specific/supported-software/l/libtirpc.md @@ -21,6 +21,7 @@ version | toolchain ``1.3.3`` | ``GCCcore/12.2.0`` ``1.3.3`` | ``GCCcore/12.3.0`` ``1.3.4`` | ``GCCcore/13.2.0`` +``1.3.5`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MOKIT.md b/docs/version-specific/supported-software/m/MOKIT.md new file mode 100644 index 000000000..cdba7b786 --- /dev/null +++ b/docs/version-specific/supported-software/m/MOKIT.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# MOKIT + +MOKIT offers various utilities and modules to transfer MOs among various quantum chemistry software packages. + +*homepage*: + +version | toolchain +--------|---------- +``1.2.6_20240830`` | ``gfbf/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/m/MPICH.md b/docs/version-specific/supported-software/m/MPICH.md index dc352f685..9fa987396 100644 --- a/docs/version-specific/supported-software/m/MPICH.md +++ b/docs/version-specific/supported-software/m/MPICH.md @@ -18,6 +18,7 @@ version | toolchain ``3.3.2`` | ``GCC/9.3.0`` ``3.4.2`` | ``GCC/10.3.0`` ``4.2.1`` | ``GCC/12.3.0`` +``4.2.2`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/Markdown.md b/docs/version-specific/supported-software/m/Markdown.md index 9e478ce10..31eced003 100644 --- a/docs/version-specific/supported-software/m/Markdown.md +++ b/docs/version-specific/supported-software/m/Markdown.md @@ -13,6 +13,7 @@ version | toolchain ``3.6`` | ``GCCcore/12.2.0`` ``3.6`` | ``GCCcore/12.3.0`` ``3.6`` | ``GCCcore/13.2.0`` +``3.7`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/index.md b/docs/version-specific/supported-software/m/index.md index 63439f03b..2ac0de438 100644 --- a/docs/version-specific/supported-software/m/index.md +++ b/docs/version-specific/supported-software/m/index.md @@ -202,6 +202,7 @@ search: * [MODFLOW](MODFLOW.md) * [modred](modred.md) * [MOFA2](MOFA2.md) + * [MOKIT](MOKIT.md) * [Molcas](Molcas.md) * [mold](mold.md) * [Molden](Molden.md) diff --git a/docs/version-specific/supported-software/m/mctc-lib.md b/docs/version-specific/supported-software/m/mctc-lib.md index 39d6a2881..86ffd2441 100644 --- a/docs/version-specific/supported-software/m/mctc-lib.md +++ b/docs/version-specific/supported-software/m/mctc-lib.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``0.3.1`` | ``GCC/11.3.0`` ``0.3.1`` | ``GCC/12.2.0`` +``0.3.1`` | ``GCC/12.3.0`` ``0.3.1`` | ``intel-compilers/2022.1.0`` ``0.3.1`` | ``intel-compilers/2022.2.1`` diff --git a/docs/version-specific/supported-software/m/mstore.md b/docs/version-specific/supported-software/m/mstore.md index 2ba2b863c..5bf914b1c 100644 --- a/docs/version-specific/supported-software/m/mstore.md +++ b/docs/version-specific/supported-software/m/mstore.md @@ -15,6 +15,7 @@ version | toolchain ``0.2.0`` | ``GCC/12.2.0`` ``0.2.0`` | ``intel-compilers/2022.1.0`` ``0.2.0`` | ``intel-compilers/2022.2.1`` +``0.3.0`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/multicharge.md b/docs/version-specific/supported-software/m/multicharge.md index 3c9198789..731c126e1 100644 --- a/docs/version-specific/supported-software/m/multicharge.md +++ b/docs/version-specific/supported-software/m/multicharge.md @@ -13,6 +13,7 @@ version | toolchain ``0.2.0`` | ``gfbf/2022b`` ``0.2.0`` | ``iimkl/2022a`` ``0.2.0`` | ``iimkl/2022b`` +``0.3.0`` | ``gfbf/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NTPoly.md b/docs/version-specific/supported-software/n/NTPoly.md index defa4dce8..bbafbb4ca 100644 --- a/docs/version-specific/supported-software/n/NTPoly.md +++ b/docs/version-specific/supported-software/n/NTPoly.md @@ -14,7 +14,9 @@ version | toolchain ``2.5.1`` | ``intel/2020b`` ``2.7.0`` | ``foss/2021a`` ``2.7.0`` | ``intel/2021a`` +``2.7.1`` | ``foss/2022a`` ``2.7.1`` | ``intel/2020b`` +``3.1.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NanoComp.md b/docs/version-specific/supported-software/n/NanoComp.md index b1a8b8ec1..a09d0c970 100644 --- a/docs/version-specific/supported-software/n/NanoComp.md +++ b/docs/version-specific/supported-software/n/NanoComp.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``1.10.1`` | ``-Python-3.7.4`` | ``intel/2019b`` ``1.13.1`` | | ``intel/2020b`` +``1.24.0`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NanoFilt.md b/docs/version-specific/supported-software/n/NanoFilt.md index 130e339ac..94185348e 100644 --- a/docs/version-specific/supported-software/n/NanoFilt.md +++ b/docs/version-specific/supported-software/n/NanoFilt.md @@ -15,6 +15,7 @@ version | versionsuffix | toolchain ``2.6.0`` | ``-Python-3.7.4`` | ``intel/2019b`` ``2.6.0`` | ``-Python-3.8.2`` | ``intel/2020a`` ``2.8.0`` | | ``foss/2021b`` +``2.8.0`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NanoLyse.md b/docs/version-specific/supported-software/n/NanoLyse.md index 65df19c47..062670d03 100644 --- a/docs/version-specific/supported-software/n/NanoLyse.md +++ b/docs/version-specific/supported-software/n/NanoLyse.md @@ -11,6 +11,7 @@ Remove reads mapping to the lambda phage genome from a fastq file. version | toolchain --------|---------- ``1.2.1`` | ``foss/2021a`` +``1.2.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NanoPlot.md b/docs/version-specific/supported-software/n/NanoPlot.md index 55d66ab7e..33dabb626 100644 --- a/docs/version-specific/supported-software/n/NanoPlot.md +++ b/docs/version-specific/supported-software/n/NanoPlot.md @@ -14,6 +14,7 @@ version | versionsuffix | toolchain ``1.33.0`` | | ``foss/2021a`` ``1.33.0`` | | ``intel/2020b`` ``1.42.0`` | | ``foss/2022a`` +``1.43.0`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NanoStat.md b/docs/version-specific/supported-software/n/NanoStat.md index 34bea78fb..dcb024fa3 100644 --- a/docs/version-specific/supported-software/n/NanoStat.md +++ b/docs/version-specific/supported-software/n/NanoStat.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``1.6.0`` | ``foss/2021a`` ``1.6.0`` | ``foss/2022a`` +``1.6.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/index.md b/docs/version-specific/supported-software/n/index.md index d61c52810..c2288c7d3 100644 --- a/docs/version-specific/supported-software/n/index.md +++ b/docs/version-specific/supported-software/n/index.md @@ -27,6 +27,7 @@ search: * [NanoPlot](NanoPlot.md) * [nanopolish](nanopolish.md) * [NanopolishComp](NanopolishComp.md) + * [nanoQC](nanoQC.md) * [NanoStat](NanoStat.md) * [napari](napari.md) * [napari-denoiseg](napari-denoiseg.md) diff --git a/docs/version-specific/supported-software/n/nanoQC.md b/docs/version-specific/supported-software/n/nanoQC.md new file mode 100644 index 000000000..bcdc35dbf --- /dev/null +++ b/docs/version-specific/supported-software/n/nanoQC.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# nanoQC + +Quality control tools for long read sequencing data aiming to replicate some of the plots made by fastQC. + +*homepage*: + +version | toolchain +--------|---------- +``0.9.4`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/n/nanoget.md b/docs/version-specific/supported-software/n/nanoget.md index e5df0c0ac..70d51bbb5 100644 --- a/docs/version-specific/supported-software/n/nanoget.md +++ b/docs/version-specific/supported-software/n/nanoget.md @@ -16,6 +16,7 @@ version | versionsuffix | toolchain ``1.18.1`` | | ``foss/2022a`` ``1.18.1`` | | ``foss/2022b`` ``1.19.1`` | | ``foss/2022a`` +``1.19.3`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/nanomath.md b/docs/version-specific/supported-software/n/nanomath.md index 211382d10..bf73cceac 100644 --- a/docs/version-specific/supported-software/n/nanomath.md +++ b/docs/version-specific/supported-software/n/nanomath.md @@ -15,6 +15,7 @@ version | versionsuffix | toolchain ``1.2.1`` | | ``foss/2021a`` ``1.3.0`` | | ``foss/2022a`` ``1.3.0`` | | ``foss/2022b`` +``1.4.0`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PCAngsd.md b/docs/version-specific/supported-software/p/PCAngsd.md index e0b9961b6..a79714c9a 100644 --- a/docs/version-specific/supported-software/p/PCAngsd.md +++ b/docs/version-specific/supported-software/p/PCAngsd.md @@ -11,6 +11,7 @@ PCAngsd, which estimates the covariance matrix for low depth NGS data in an ite version | versionsuffix | toolchain --------|---------------|---------- ``0.97`` | ``-Python-2.7.14`` | ``foss/2018a`` +``1.2`` | | ``gfbf/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PLINK.md b/docs/version-specific/supported-software/p/PLINK.md index 2b02d53f6..4b3a36ee3 100644 --- a/docs/version-specific/supported-software/p/PLINK.md +++ b/docs/version-specific/supported-software/p/PLINK.md @@ -13,6 +13,7 @@ version | toolchain ``1.07`` | ``foss/2016a`` ``1.07`` | ``foss/2016b`` ``1.07-x86_64`` | ``system`` +``1.90-beta-7.4-x86_64`` | ``system`` ``1.9b5`` | ``golf/2020a`` ``1.9b_4.1-x86_64`` | ``system`` ``1.9b_6.17-x86_64`` | ``system`` diff --git a/docs/version-specific/supported-software/p/PROJ.md b/docs/version-specific/supported-software/p/PROJ.md index 2077d30c1..14899fdb0 100644 --- a/docs/version-specific/supported-software/p/PROJ.md +++ b/docs/version-specific/supported-software/p/PROJ.md @@ -35,6 +35,7 @@ version | toolchain ``9.1.1`` | ``GCCcore/12.2.0`` ``9.2.0`` | ``GCCcore/12.3.0`` ``9.3.1`` | ``GCCcore/13.2.0`` +``9.4.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Pango.md b/docs/version-specific/supported-software/p/Pango.md index 27a6f2661..88b27b2cd 100644 --- a/docs/version-specific/supported-software/p/Pango.md +++ b/docs/version-specific/supported-software/p/Pango.md @@ -36,6 +36,7 @@ version | toolchain ``1.50.14`` | ``GCCcore/12.3.0`` ``1.50.7`` | ``GCCcore/11.3.0`` ``1.51.0`` | ``GCCcore/13.2.0`` +``1.54.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Pillow.md b/docs/version-specific/supported-software/p/Pillow.md index bb8067fab..2b1779354 100644 --- a/docs/version-specific/supported-software/p/Pillow.md +++ b/docs/version-specific/supported-software/p/Pillow.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``10.0.0`` | | ``GCCcore/12.3.0`` ``10.2.0`` | | ``GCCcore/13.2.0`` +``10.4.0`` | | ``GCCcore/13.3.0`` ``3.2.0`` | ``-Python-2.7.11-freetype-2.6.3`` | ``foss/2016a`` ``3.2.0`` | ``-Python-2.7.11-freetype-2.6.3`` | ``intel/2016a`` ``3.2.0`` | ``-Python-2.7.11`` | ``intel/2016a`` diff --git a/docs/version-specific/supported-software/p/PyBullet.md b/docs/version-specific/supported-software/p/PyBullet.md new file mode 100644 index 000000000..cabccc63e --- /dev/null +++ b/docs/version-specific/supported-software/p/PyBullet.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# PyBullet + +Bullet Physics SDK: real-time collision detection and multi-physics simulation for VR, games, visual effects, robotics, machine learning etc. + +*homepage*: + +version | toolchain +--------|---------- +``3.2.6`` | ``gfbf/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/p/index.md b/docs/version-specific/supported-software/p/index.md index bbca880e8..61a00137f 100644 --- a/docs/version-specific/supported-software/p/index.md +++ b/docs/version-specific/supported-software/p/index.md @@ -102,6 +102,7 @@ search: * [PHANOTATE](PHANOTATE.md) * [Phantompeakqualtools](Phantompeakqualtools.md) * [PHASE](PHASE.md) + * [phasius](phasius.md) * [PHAST](PHAST.md) * [Phenoflow](Phenoflow.md) * [PheWAS](PheWAS.md) @@ -281,6 +282,7 @@ search: * [pybind11-stubgen](pybind11-stubgen.md) * [pybinding](pybinding.md) * [PyBioLib](PyBioLib.md) + * [PyBullet](PyBullet.md) * [PyCairo](PyCairo.md) * [PyCalib](PyCalib.md) * [pyccel](pyccel.md) diff --git a/docs/version-specific/supported-software/p/phasius.md b/docs/version-specific/supported-software/p/phasius.md new file mode 100644 index 000000000..2afa9f0ae --- /dev/null +++ b/docs/version-specific/supported-software/p/phasius.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# phasius + +A tool to visualize phase block structure from (many) BAM, CRAM or VCF files together with BED annotation + +*homepage*: + +version | toolchain +--------|---------- +``0.2.0`` | ``GCC/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/p/plotly-orca.md b/docs/version-specific/supported-software/p/plotly-orca.md index 588cf948a..920836f2f 100644 --- a/docs/version-specific/supported-software/p/plotly-orca.md +++ b/docs/version-specific/supported-software/p/plotly-orca.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``1.3.0`` | ``GCCcore/8.3.0`` ``1.3.1`` | ``GCCcore/10.2.0`` +``1.3.1`` | ``GCCcore/12.3.0`` ``1.3.1`` | ``GCCcore/9.3.0`` diff --git a/docs/version-specific/supported-software/p/pocl.md b/docs/version-specific/supported-software/p/pocl.md index 96a8ba87d..5ea2a7933 100644 --- a/docs/version-specific/supported-software/p/pocl.md +++ b/docs/version-specific/supported-software/p/pocl.md @@ -25,6 +25,7 @@ version | versionsuffix | toolchain ``1.8`` | | ``GCC/11.3.0`` ``4.0`` | ``-CUDA-12.1.1`` | ``GCC/12.3.0`` ``4.0`` | | ``GCC/12.3.0`` +``6.0`` | | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/prompt-toolkit.md b/docs/version-specific/supported-software/p/prompt-toolkit.md index 1ae4ca1c0..e8822fb6a 100644 --- a/docs/version-specific/supported-software/p/prompt-toolkit.md +++ b/docs/version-specific/supported-software/p/prompt-toolkit.md @@ -19,6 +19,7 @@ version | versionsuffix | toolchain ``3.0.36`` | | ``GCCcore/12.2.0`` ``3.0.36`` | | ``GCCcore/12.3.0`` ``3.0.36`` | | ``GCCcore/13.2.0`` +``3.0.36`` | | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/protobuf-python.md b/docs/version-specific/supported-software/p/protobuf-python.md index 24f847c21..65a43b0ed 100644 --- a/docs/version-specific/supported-software/p/protobuf-python.md +++ b/docs/version-specific/supported-software/p/protobuf-python.md @@ -37,6 +37,7 @@ version | versionsuffix | toolchain ``4.23.0`` | | ``GCCcore/12.2.0`` ``4.24.0`` | | ``GCCcore/12.3.0`` ``4.25.3`` | | ``GCCcore/13.2.0`` +``5.28.0`` | | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/protobuf.md b/docs/version-specific/supported-software/p/protobuf.md index 8c910b386..bf9c82f3a 100644 --- a/docs/version-specific/supported-software/p/protobuf.md +++ b/docs/version-specific/supported-software/p/protobuf.md @@ -18,6 +18,7 @@ version | toolchain ``23.0`` | ``GCCcore/12.2.0`` ``24.0`` | ``GCCcore/12.3.0`` ``25.3`` | ``GCCcore/13.2.0`` +``28.0`` | ``GCCcore/13.3.0`` ``3.0.2`` | ``foss/2016a`` ``3.10.0`` | ``GCCcore/8.3.0`` ``3.10.0`` | ``GCCcore/9.3.0`` diff --git a/docs/version-specific/supported-software/p/pytest-flakefinder.md b/docs/version-specific/supported-software/p/pytest-flakefinder.md index 98eca0bcb..84393b867 100644 --- a/docs/version-specific/supported-software/p/pytest-flakefinder.md +++ b/docs/version-specific/supported-software/p/pytest-flakefinder.md @@ -14,6 +14,7 @@ version | toolchain ``1.1.0`` | ``GCCcore/12.2.0`` ``1.1.0`` | ``GCCcore/12.3.0`` ``1.1.0`` | ``GCCcore/13.2.0`` +``1.1.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pytest-workflow.md b/docs/version-specific/supported-software/p/pytest-workflow.md index 28b33e0ac..6d07e1cfc 100644 --- a/docs/version-specific/supported-software/p/pytest-workflow.md +++ b/docs/version-specific/supported-software/p/pytest-workflow.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``2.0.1`` | ``GCCcore/12.2.0`` ``2.1.0`` | ``GCCcore/13.2.0`` +``2.1.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/python-isal.md b/docs/version-specific/supported-software/p/python-isal.md index 29e83ee50..640e2f21b 100644 --- a/docs/version-specific/supported-software/p/python-isal.md +++ b/docs/version-specific/supported-software/p/python-isal.md @@ -17,6 +17,7 @@ version | toolchain ``1.1.0`` | ``GCCcore/12.2.0`` ``1.1.0`` | ``GCCcore/12.3.0`` ``1.6.1`` | ``GCCcore/13.2.0`` +``1.7.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/qcat.md b/docs/version-specific/supported-software/q/qcat.md index d74d7094c..7e0134a22 100644 --- a/docs/version-specific/supported-software/q/qcat.md +++ b/docs/version-specific/supported-software/q/qcat.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``1.1.0`` | ``-Python-3.7.4`` | ``foss/2019b`` ``1.1.0`` | | ``foss/2022b`` +``1.1.0`` | | ``foss/2023a`` ``1.1.0`` | ``-Python-3.7.4`` | ``intel/2019b`` ``1.1.0`` | ``-Python-3.8.2`` | ``intel/2020a`` diff --git a/docs/version-specific/supported-software/r/R-tesseract.md b/docs/version-specific/supported-software/r/R-tesseract.md index d81bb9488..cac847cee 100644 --- a/docs/version-specific/supported-software/r/R-tesseract.md +++ b/docs/version-specific/supported-software/r/R-tesseract.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``4.0`` | ``-R-3.5.1`` | ``foss/2018b`` ``5.1.0`` | ``-R-4.2.1`` | ``foss/2022a`` +``5.2.1`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/RDFlib.md b/docs/version-specific/supported-software/r/RDFlib.md index 8e1d05504..549fad59d 100644 --- a/docs/version-specific/supported-software/r/RDFlib.md +++ b/docs/version-specific/supported-software/r/RDFlib.md @@ -16,6 +16,7 @@ version | toolchain ``6.2.0`` | ``GCCcore/10.3.0`` ``6.2.0`` | ``GCCcore/11.3.0`` ``7.0.0`` | ``GCCcore/12.3.0`` +``7.0.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/RHEIA.md b/docs/version-specific/supported-software/r/RHEIA.md index b277c11f9..7494644f5 100644 --- a/docs/version-specific/supported-software/r/RHEIA.md +++ b/docs/version-specific/supported-software/r/RHEIA.md @@ -10,6 +10,7 @@ Robust design optimization of renewable Hydrogen and dErIved energy cArrier syst version | toolchain --------|---------- +``1.1.11`` | ``foss/2023a`` ``1.1.6`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/r/RMBlast.md b/docs/version-specific/supported-software/r/RMBlast.md index 56db8c545..ec359e828 100644 --- a/docs/version-specific/supported-software/r/RMBlast.md +++ b/docs/version-specific/supported-software/r/RMBlast.md @@ -14,6 +14,7 @@ version | versionsuffix | toolchain ``2.11.0`` | | ``gompi/2020b`` ``2.13.0`` | | ``gompi/2022a`` ``2.14.0`` | | ``gompi/2021a`` +``2.14.1`` | | ``gompi/2023a`` ``2.2.28`` | ``-Python-2.7.11`` | ``foss/2016a`` ``2.9.0`` | | ``gompi/2019b`` diff --git a/docs/version-specific/supported-software/r/RapidJSON.md b/docs/version-specific/supported-software/r/RapidJSON.md index eea0241fe..0088752d9 100644 --- a/docs/version-specific/supported-software/r/RapidJSON.md +++ b/docs/version-specific/supported-software/r/RapidJSON.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``1.1.0-20230928`` | ``GCCcore/12.3.0`` ``1.1.0-20240409`` | ``GCCcore/13.2.0`` +``1.1.0-20240815`` | ``GCCcore/13.3.0`` ``1.1.0`` | ``GCCcore/10.2.0`` ``1.1.0`` | ``GCCcore/10.3.0`` ``1.1.0`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/r/ReFrame.md b/docs/version-specific/supported-software/r/ReFrame.md index 9838fcacd..c24680464 100644 --- a/docs/version-specific/supported-software/r/ReFrame.md +++ b/docs/version-specific/supported-software/r/ReFrame.md @@ -8,37 +8,39 @@ ReFrame is a framework for writing regression tests for HPC systems. *homepage*: -version | toolchain ---------|---------- -``2.18`` | ``system`` -``2.19`` | ``system`` -``2.20`` | ``system`` -``2.21`` | ``system`` -``3.0`` | ``system`` -``3.10.1`` | ``system`` -``3.11.0`` | ``system`` -``3.11.1`` | ``system`` -``3.11.2`` | ``system`` -``3.12.0`` | ``system`` -``3.2`` | ``system`` -``3.3`` | ``system`` -``3.4.1`` | ``system`` -``3.5.0`` | ``system`` -``3.5.1`` | ``system`` -``3.5.2`` | ``system`` -``3.6.2`` | ``system`` -``3.6.3`` | ``system`` -``3.7.3`` | ``system`` -``3.8.0`` | ``system`` -``3.9.0`` | ``system`` -``3.9.1`` | ``system`` -``4.0.1`` | ``system`` -``4.0.5`` | ``system`` -``4.2.0`` | ``system`` -``4.3.2`` | ``system`` -``4.3.3`` | ``system`` -``4.6.2`` | ``GCCcore/12.3.0`` -``4.6.2`` | ``GCCcore/13.2.0`` +version | versionsuffix | toolchain +--------|---------------|---------- +``2.18`` | | ``system`` +``2.19`` | | ``system`` +``2.20`` | | ``system`` +``2.21`` | | ``system`` +``3.0`` | | ``system`` +``3.10.1`` | | ``system`` +``3.11.0`` | | ``system`` +``3.11.1`` | | ``system`` +``3.11.2`` | | ``system`` +``3.12.0`` | | ``system`` +``3.2`` | | ``system`` +``3.3`` | | ``system`` +``3.4.1`` | | ``system`` +``3.5.0`` | | ``system`` +``3.5.1`` | | ``system`` +``3.5.2`` | | ``system`` +``3.6.2`` | | ``system`` +``3.6.3`` | | ``system`` +``3.7.3`` | | ``system`` +``3.8.0`` | | ``system`` +``3.9.0`` | | ``system`` +``3.9.1`` | | ``system`` +``4.0.1`` | | ``system`` +``4.0.5`` | | ``system`` +``4.2.0`` | | ``system`` +``4.3.2`` | | ``system`` +``4.3.3`` | | ``system`` +``4.6.2`` | | ``GCCcore/12.3.0`` +``4.6.2`` | | ``GCCcore/13.2.0`` +``4.6.2`` | ``-Python-3.6`` | ``system`` +``4.6.2`` | | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/RepeatMasker.md b/docs/version-specific/supported-software/r/RepeatMasker.md index dcc0aef1f..23a878115 100644 --- a/docs/version-specific/supported-software/r/RepeatMasker.md +++ b/docs/version-specific/supported-software/r/RepeatMasker.md @@ -18,6 +18,7 @@ version | versionsuffix | toolchain ``4.1.4`` | | ``foss/2022a`` ``4.1.5`` | | ``foss/2021a`` ``4.1.5`` | | ``foss/2022a`` +``4.1.7-p1`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/index.md b/docs/version-specific/supported-software/r/index.md index 695e47b6c..8787fa2e3 100644 --- a/docs/version-specific/supported-software/r/index.md +++ b/docs/version-specific/supported-software/r/index.md @@ -116,6 +116,7 @@ search: * [RNAcode](RNAcode.md) * [RNAIndel](RNAIndel.md) * [RNAmmer](RNAmmer.md) + * [rnamotif](rnamotif.md) * [rnaQUAST](rnaQUAST.md) * [RNAz](RNAz.md) * [RnBeads](RnBeads.md) diff --git a/docs/version-specific/supported-software/r/rnamotif.md b/docs/version-specific/supported-software/r/rnamotif.md new file mode 100644 index 000000000..1bdce6ee3 --- /dev/null +++ b/docs/version-specific/supported-software/r/rnamotif.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# rnamotif + +The rnamotif program searchs input sequences for portions that match a given descriptor or "motif". Matching sequences can also be ranked by various scoring functions. + +*homepage*: + +version | toolchain +--------|---------- +``20240904`` | ``GCCcore/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/r/rustworkx.md b/docs/version-specific/supported-software/r/rustworkx.md index 38706965c..ac723e4f8 100644 --- a/docs/version-specific/supported-software/r/rustworkx.md +++ b/docs/version-specific/supported-software/r/rustworkx.md @@ -11,6 +11,7 @@ rustworkx (previously retworkx) is a general purpose graph library for Python wr version | toolchain --------|---------- ``0.12.1`` | ``foss/2022a`` +``0.12.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SNAP-ESA.md b/docs/version-specific/supported-software/s/SNAP-ESA.md index d35ac9ffc..ed0b0b2a5 100644 --- a/docs/version-specific/supported-software/s/SNAP-ESA.md +++ b/docs/version-specific/supported-software/s/SNAP-ESA.md @@ -10,6 +10,7 @@ The Sentinel Application Platform (SNAP) is a common architecture for all Sentin version | versionsuffix | toolchain --------|---------------|---------- +``10.0.0`` | ``-Java-11`` | ``system`` ``8.0`` | ``-Java-1.8`` | ``system`` ``9.0.0`` | ``-Java-11`` | ``system`` diff --git a/docs/version-specific/supported-software/s/Seaborn.md b/docs/version-specific/supported-software/s/Seaborn.md index d9f9356db..d72a45490 100644 --- a/docs/version-specific/supported-software/s/Seaborn.md +++ b/docs/version-specific/supported-software/s/Seaborn.md @@ -25,6 +25,7 @@ version | versionsuffix | toolchain ``0.12.2`` | | ``foss/2022b`` ``0.13.2`` | | ``gfbf/2023a`` ``0.13.2`` | | ``gfbf/2023b`` +``0.13.2`` | | ``gfbf/2024a`` ``0.7.1`` | ``-Python-2.7.12`` | ``intel/2016b`` ``0.8.1`` | ``-Python-2.7.13`` | ``foss/2017a`` ``0.8.1`` | ``-Python-2.7.14`` | ``intel/2018a`` diff --git a/docs/version-specific/supported-software/s/Single-cell-python-bundle.md b/docs/version-specific/supported-software/s/Single-cell-python-bundle.md index be7ece8af..a82c7aed6 100644 --- a/docs/version-specific/supported-software/s/Single-cell-python-bundle.md +++ b/docs/version-specific/supported-software/s/Single-cell-python-bundle.md @@ -8,9 +8,10 @@ Bundle of tools for single-cell sequence analysis. *homepage*: -version | toolchain ---------|---------- -``2024.02`` | ``foss/2023a`` +version | versionsuffix | toolchain +--------|---------------|---------- +``2024.02`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``2024.02`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/scArches.md b/docs/version-specific/supported-software/s/scArches.md index 4999976ca..3b56c990f 100644 --- a/docs/version-specific/supported-software/s/scArches.md +++ b/docs/version-specific/supported-software/s/scArches.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``0.5.6`` | ``-CUDA-11.3.1`` | ``foss/2021a`` ``0.5.6`` | | ``foss/2021a`` +``0.6.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``0.6.1`` | | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/s/scib-metrics.md b/docs/version-specific/supported-software/s/scib-metrics.md index 6c9331a43..3f71759d6 100644 --- a/docs/version-specific/supported-software/s/scib-metrics.md +++ b/docs/version-specific/supported-software/s/scib-metrics.md @@ -8,10 +8,11 @@ Accelerated and Python-only metrics for benchmarking single-cell integration out *homepage*: -version | toolchain ---------|---------- -``0.3.3`` | ``foss/2021a`` -``0.5.1`` | ``foss/2023a`` +version | versionsuffix | toolchain +--------|---------------|---------- +``0.3.3`` | | ``foss/2021a`` +``0.5.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``0.5.1`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/scikit-build-core.md b/docs/version-specific/supported-software/s/scikit-build-core.md index 9e3681890..8fe193b02 100644 --- a/docs/version-specific/supported-software/s/scikit-build-core.md +++ b/docs/version-specific/supported-software/s/scikit-build-core.md @@ -10,6 +10,7 @@ Scikit-build-core is a complete ground-up rewrite of scikit-build on top of mode version | toolchain --------|---------- +``0.10.6`` | ``GCCcore/13.3.0`` ``0.5.0`` | ``GCCcore/12.3.0`` ``0.9.3`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/s/sleuth.md b/docs/version-specific/supported-software/s/sleuth.md index d4375274e..9a882e117 100644 --- a/docs/version-specific/supported-software/s/sleuth.md +++ b/docs/version-specific/supported-software/s/sleuth.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``0.29.0`` | ``-R-3.4.0`` | ``intel/2017a`` ``0.30.0`` | ``-R-3.5.1`` | ``foss/2018b`` +``0.30.1`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/TRF.md b/docs/version-specific/supported-software/t/TRF.md index a5e5482c5..ca2ddcf8a 100644 --- a/docs/version-specific/supported-software/t/TRF.md +++ b/docs/version-specific/supported-software/t/TRF.md @@ -15,6 +15,7 @@ version | versionsuffix | toolchain ``4.09.1`` | | ``GCCcore/10.2.0`` ``4.09.1`` | | ``GCCcore/11.2.0`` ``4.09.1`` | | ``GCCcore/11.3.0`` +``4.09.1`` | | ``GCCcore/12.3.0`` ``4.09.1`` | | ``GCCcore/9.3.0`` diff --git a/docs/version-specific/supported-software/t/Triton.md b/docs/version-specific/supported-software/t/Triton.md index 61cff3374..74b746f6f 100644 --- a/docs/version-specific/supported-software/t/Triton.md +++ b/docs/version-specific/supported-software/t/Triton.md @@ -11,6 +11,7 @@ Triton is a language and compiler for parallel programming. It aims to provide a version | versionsuffix | toolchain --------|---------------|---------- ``1.1.1`` | ``-CUDA-11.7.0`` | ``foss/2022a`` +``2.1.0`` | ``-CUDA-12.1.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/TurboVNC.md b/docs/version-specific/supported-software/t/TurboVNC.md index 3fdcc5ad8..58e21ffa7 100644 --- a/docs/version-specific/supported-software/t/TurboVNC.md +++ b/docs/version-specific/supported-software/t/TurboVNC.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``2.2.3`` | ``GCCcore/8.2.0`` ``3.0.1`` | ``GCCcore/11.3.0`` +``3.1.2`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/tesseract.md b/docs/version-specific/supported-software/t/tesseract.md index afbb8a805..2aca48897 100644 --- a/docs/version-specific/supported-software/t/tesseract.md +++ b/docs/version-specific/supported-software/t/tesseract.md @@ -14,6 +14,7 @@ version | toolchain ``4.1.0`` | ``GCCcore/10.3.0`` ``4.1.0`` | ``GCCcore/8.2.0`` ``5.3.0`` | ``GCCcore/11.3.0`` +``5.3.4`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/tqdm.md b/docs/version-specific/supported-software/t/tqdm.md index dabfed554..a75fd41e1 100644 --- a/docs/version-specific/supported-software/t/tqdm.md +++ b/docs/version-specific/supported-software/t/tqdm.md @@ -28,6 +28,7 @@ version | versionsuffix | toolchain ``4.64.1`` | | ``GCCcore/12.2.0`` ``4.66.1`` | | ``GCCcore/12.3.0`` ``4.66.2`` | | ``GCCcore/13.2.0`` +``4.66.5`` | | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/typing-extensions.md b/docs/version-specific/supported-software/t/typing-extensions.md index 23984d453..0d20c2975 100644 --- a/docs/version-specific/supported-software/t/typing-extensions.md +++ b/docs/version-specific/supported-software/t/typing-extensions.md @@ -16,6 +16,7 @@ version | versionsuffix | toolchain ``3.7.4.3`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` ``3.7.4.3`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` ``4.10.0`` | | ``GCCcore/13.2.0`` +``4.11.0`` | | ``GCCcore/13.3.0`` ``4.3.0`` | | ``GCCcore/11.3.0`` ``4.4.0`` | | ``GCCcore/10.3.0`` ``4.9.0`` | | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/v/VirtualGL.md b/docs/version-specific/supported-software/v/VirtualGL.md index 307b046e7..a272ffd52 100644 --- a/docs/version-specific/supported-software/v/VirtualGL.md +++ b/docs/version-specific/supported-software/v/VirtualGL.md @@ -14,6 +14,7 @@ version | toolchain ``2.6.2`` | ``GCCcore/9.3.0`` ``3.0`` | ``GCC/11.2.0`` ``3.1`` | ``GCC/12.3.0`` +``3.1.1`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/v/index.md b/docs/version-specific/supported-software/v/index.md index cf4d9a14e..4acf8b951 100644 --- a/docs/version-specific/supported-software/v/index.md +++ b/docs/version-specific/supported-software/v/index.md @@ -36,6 +36,7 @@ search: * [VEP](VEP.md) * [verifyBamID](verifyBamID.md) * [VERSE](VERSE.md) + * [versioningit](versioningit.md) * [VESTA](VESTA.md) * [ViennaRNA](ViennaRNA.md) * [vigra](vigra.md) diff --git a/docs/version-specific/supported-software/v/versioningit.md b/docs/version-specific/supported-software/v/versioningit.md new file mode 100644 index 000000000..fc8505cee --- /dev/null +++ b/docs/version-specific/supported-software/v/versioningit.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# versioningit + +versioningit is yet another Python packaging plugin for automatically determining your package’s version based on your version control repository’s tags. Unlike others, it allows easy customization of the version format and even lets you easily override the separate functions used for version extraction & calculation. + +*homepage*: + +version | toolchain +--------|---------- +``3.1.2`` | ``GCCcore/13.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/w/worker.md b/docs/version-specific/supported-software/w/worker.md index c6afd95a6..65430e949 100644 --- a/docs/version-specific/supported-software/w/worker.md +++ b/docs/version-specific/supported-software/w/worker.md @@ -15,6 +15,7 @@ version | versionsuffix | toolchain ``1.6.12`` | | ``foss/2021b`` ``1.6.13`` | | ``iimpi/2021b`` ``1.6.13`` | | ``iimpi/2022b`` +``1.6.13`` | | ``iimpi/2023a`` ``1.6.4`` | | ``intel/2016a`` ``1.6.5`` | | ``intel/2016a`` ``1.6.6`` | | ``intel/2016b`` diff --git a/docs/version-specific/supported-software/x/index.md b/docs/version-specific/supported-software/x/index.md index f930b974a..9f46a02e2 100644 --- a/docs/version-specific/supported-software/x/index.md +++ b/docs/version-specific/supported-software/x/index.md @@ -53,6 +53,7 @@ search: * [xprop](xprop.md) * [xproto](xproto.md) * [XSD](XSD.md) + * [xskillscore](xskillscore.md) * [XTandem](XTandem.md) * [xtb](xtb.md) * [xtb-IFF](xtb-IFF.md) diff --git a/docs/version-specific/supported-software/x/xskillscore.md b/docs/version-specific/supported-software/x/xskillscore.md new file mode 100644 index 000000000..f0a1078ad --- /dev/null +++ b/docs/version-specific/supported-software/x/xskillscore.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# xskillscore + +xskillscore is an open source project and Python package that provides verification metrics of deterministic (and probabilistic from properscoring) forecasts with xarray. + +*homepage*: + +version | toolchain +--------|---------- +``0.0.26`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/z/zlib-ng.md b/docs/version-specific/supported-software/z/zlib-ng.md index 5fcba910b..f28a44f7c 100644 --- a/docs/version-specific/supported-software/z/zlib-ng.md +++ b/docs/version-specific/supported-software/z/zlib-ng.md @@ -14,6 +14,7 @@ version | toolchain ``2.0.6`` | ``GCCcore/10.3.0`` ``2.0.7`` | ``GCCcore/11.3.0`` ``2.1.6`` | ``GCCcore/12.3.0`` +``2.2.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/mkdocs.yml b/mkdocs.yml index d615ea43d..dffeacc0a 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -158,7 +158,7 @@ extra: provider: google property: G-BLVCH6991S easybuild: - version: 4.9.3 + version: 4.9.4 # add links in bottom right social: - icon: fontawesome/brands/twitter