diff --git a/.nojekyll b/.nojekyll
new file mode 100644
index 000000000000..e69de29bb2d1
diff --git a/404/index.html b/404/index.html
new file mode 100644
index 000000000000..3aabd5dfb21e
--- /dev/null
+++ b/404/index.html
@@ -0,0 +1,12 @@
+404: This page could not be found
For full text search please use the '?' prefix. e.g. ? Onboarding
404
This page could not be found.
\ No newline at end of file
diff --git a/500/index.html b/500/index.html
new file mode 100644
index 000000000000..473da9271dfe
--- /dev/null
+++ b/500/index.html
@@ -0,0 +1,12 @@
+500: Internal Server Error
For full text search please use the '?' prefix. e.g. ? Onboarding
500
Internal Server Error.
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/404.json b/_next/data/xTabN-GDN3smTHP7khes1/404.json
new file mode 100644
index 000000000000..25f02941004d
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/404.json
@@ -0,0 +1 @@
+{"pageProps":{"body":"
The DBGI Dendron notes
\n
Overview
\n
The Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through semantic web technology. The gathered knowledge will then inform ecosystem functioning research and orient biodiversity conservation projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems.
\n
Main goals
\n
The DBGI main goals are briefly summarized below :
If we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science
\n
For the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects.
\n
You can follow the DBGI related Open Notebooks here Open Notebook.
\n
Expect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !
\n
Each pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇
\n
If you are willing to participate the the DBGI Dendron notes have a look at the Welcome section to get you started !
\n
What's new ?!
\n
This web site might not necessarily seem to be change since the last time you came to visit.
","note":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}},"customHeadContent":null,"noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/500.json b/_next/data/xTabN-GDN3smTHP7khes1/500.json
new file mode 100644
index 000000000000..25f02941004d
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/500.json
@@ -0,0 +1 @@
+{"pageProps":{"body":"
The DBGI Dendron notes
\n
Overview
\n
The Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through semantic web technology. The gathered knowledge will then inform ecosystem functioning research and orient biodiversity conservation projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems.
\n
Main goals
\n
The DBGI main goals are briefly summarized below :
If we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science
\n
For the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects.
\n
You can follow the DBGI related Open Notebooks here Open Notebook.
\n
Expect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !
\n
Each pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇
\n
If you are willing to participate the the DBGI Dendron notes have a look at the Welcome section to get you started !
\n
What's new ?!
\n
This web site might not necessarily seem to be change since the last time you came to visit.
","note":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}},"customHeadContent":null,"noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/index.json b/_next/data/xTabN-GDN3smTHP7khes1/index.json
new file mode 100644
index 000000000000..25f02941004d
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/index.json
@@ -0,0 +1 @@
+{"pageProps":{"body":"
The DBGI Dendron notes
\n
Overview
\n
The Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through semantic web technology. The gathered knowledge will then inform ecosystem functioning research and orient biodiversity conservation projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems.
\n
Main goals
\n
The DBGI main goals are briefly summarized below :
If we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science
\n
For the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects.
\n
You can follow the DBGI related Open Notebooks here Open Notebook.
\n
Expect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !
\n
Each pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇
\n
If you are willing to participate the the DBGI Dendron notes have a look at the Welcome section to get you started !
\n
What's new ?!
\n
This web site might not necessarily seem to be change since the last time you came to visit.
","note":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}},"customHeadContent":null,"noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/00766fikfyl4yrxeinikond.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/00766fikfyl4yrxeinikond.json
new file mode 100644
index 000000000000..89c2f25dc99e
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/00766fikfyl4yrxeinikond.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"00766fikfyl4yrxeinikond","title":"2023-04-27","desc":"","updated":1682608565299,"created":1682575206704,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.04.27","type":"note","vault":{"fsPath":"vault"},"contentHash":"1a65eeba2a0d6f45f4f6ba8f1431ba3b","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"js-tutorials":{"type":"header","text":"JS tutorials","value":"js-tutorials","line":25,"column":0,"depth":3},"variable-creation":{"type":"header","text":"variable creation","value":"variable-creation","line":28,"column":0,"depth":4},"variable-comparison":{"type":"header","text":"variable comparison","value":"variable-comparison","line":33,"column":0,"depth":4},"loops":{"type":"header","text":"Loops","value":"loops","line":44,"column":0,"depth":4},"functions":{"type":"header","text":"functions","value":"functions","line":66,"column":0,"depth":4},"function-declaration":{"type":"header","text":"function declaration:","value":"function-declaration","line":67,"column":0,"depth":5},"function-expresion":{"type":"header","text":"function expresion:","value":"function-expresion","line":76,"column":0,"depth":5},"arrow-function":{"type":"header","text":"arrow function:","value":"arrow-function","line":87,"column":0,"depth":5},"method":{"type":"header","text":"method","value":"method","line":92,"column":0,"depth":5},"callbacks":{"type":"header","text":"callbacks","value":"callbacks","line":95,"column":0,"depth":5},"objects":{"type":"header","text":"Objects","value":"objects","line":109,"column":0,"depth":4},"nodejs-tutorials":{"type":"header","text":"Node.js tutorials","value":"nodejs-tutorials","line":144,"column":0,"depth":3},"introduction":{"type":"header","text":"Introduction","value":"introduction","line":147,"column":0,"depth":4},"streams-and-buffer":{"type":"header","text":"streams and buffer","value":"streams-and-buffer","line":160,"column":0,"depth":4},"piping":{"type":"header","text":"piping","value":"piping","line":174,"column":0,"depth":5},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":180,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":184,"column":0,"depth":2}},"children":[],"parent":"n0racr7o73zkdsyfvpomj9y","data":{}},"body":"
Can do the same for writing files with fs.createWriteStream().
\n
piping
\n
read a file and write\nreadStream.pipe(writeStream);
\n
TODO NEXT
\n
Continue node.js course from #7
\n
Important for redaction
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/0162odtx60h8zjxg3kcwwl8.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/0162odtx60h8zjxg3kcwwl8.json
new file mode 100644
index 000000000000..d9107b6c6a4f
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/0162odtx60h8zjxg3kcwwl8.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"0162odtx60h8zjxg3kcwwl8","title":"2022-11-22","desc":"","updated":1669145267251,"created":1669144769659,"traitIds":["open-notebook-eb"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2022.11.22","type":"note","vault":{"fsPath":"vault"},"contentHash":"f633f51e0a66b0293329d632dce58ab0","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":21,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":24,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":26,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":28,"column":0,"depth":1}},"children":[],"parent":"f5s4h26cmipsm6itdloyva0","data":{}},"body":"
2022-11-22
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2022.11.22
\n
Perspectives
\n
Try to add more than one picture in a row to make the QField process easier and faster.
\n
Try to modify location metadata of the pictures to directly add the precise location from QField to iNaturalist without adding by hand.
\n
If possible, trying to add the dbgi ID automatically in iNaturalist via QR codes in QField
\n
done
\n
Succeeded to add pictures to QField. Possibility to rename the pictures with the species, and then have an automatic identification on iNaturalist. For now, only one picture can be added by field. Usable actually, but not so practical in the field.
\n
notes
\n
code
\n
links
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/06hrtla5z9lgugnqt1y6y2h.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/06hrtla5z9lgugnqt1y6y2h.json
new file mode 100644
index 000000000000..66f806d48332
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/06hrtla5z9lgugnqt1y6y2h.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"06hrtla5z9lgugnqt1y6y2h","title":"examples","desc":"","updated":1688891021599,"created":1688886716997,"custom":{},"fname":"BiCICKL-project.nanopublications.ressources.nanopublications.examples","type":"note","vault":{"fsPath":"vault"},"contentHash":"71c00c48c6fd4fa7821bc497faae02f7","links":[],"anchors":{},"children":[],"parent":"4znf32ksin5t4737lj6rbeg","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/06t1xeogkiiks197mr73z7m.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/06t1xeogkiiks197mr73z7m.json
new file mode 100644
index 000000000000..4d400ebeea41
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/06t1xeogkiiks197mr73z7m.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"scratch.2023.08","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345620,"created":1695629345620,"id":"06t1xeogkiiks197mr73z7m","desc":"","links":[],"anchors":{},"children":["1ff9srw4s1viczhhhgrq4hu"],"parent":"nfc206twvthy35t1p9r5x53","data":{},"title":"08"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/06xi44gydrp7m1qrvfvnpce.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/06xi44gydrp7m1qrvfvnpce.json
new file mode 100644
index 000000000000..4ad305b261c3
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/06xi44gydrp7m1qrvfvnpce.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"06xi44gydrp7m1qrvfvnpce","title":"2023-06-30","desc":"","updated":1688133430475,"created":1688133364278,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.06.30","type":"note","vault":{"fsPath":"vault"},"contentHash":"cac510fe9d7a13d599510473dd9c112a","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":28,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":32,"column":0,"depth":2}},"children":[],"parent":"0rjtydgu2hme3vo7hu0vkj8","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/07v05lsxheiyzag47lp0ra7.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/07v05lsxheiyzag47lp0ra7.json
new file mode 100644
index 000000000000..346ec00c97a9
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/07v05lsxheiyzag47lp0ra7.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.lcappelletti","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345582,"created":1695629345582,"id":"07v05lsxheiyzag47lp0ra7","desc":"","links":[],"anchors":{},"children":["8w3q1chl20rs3sjp6x97v18"],"parent":"rw6o4yru1k43k19sz84xt6m","data":{},"title":"Lcappelletti"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/087v670ubwmxoo7cikdgvrz.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/087v670ubwmxoo7cikdgvrz.json
new file mode 100644
index 000000000000..14ae7ec5b9ea
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/087v670ubwmxoo7cikdgvrz.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"087v670ubwmxoo7cikdgvrz","title":"2023-09-20","desc":"","updated":1695227854147,"created":1695216807219,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.09.20","type":"note","vault":{"fsPath":"vault"},"contentHash":"ce6161bb9737a94a482459a799a45e02","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":51,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":53,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":55,"column":0,"depth":2},"todo-tomorrow-one-day--or-never":{"type":"header","text":"Todo tomorrow, one day ... or never","value":"todo-tomorrow-one-day--or-never","line":57,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":59,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":60,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":61,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":64,"column":0,"depth":2}},"children":[],"parent":"3gtlbi2k7w3yr100owwky6q","data":{}},"body":"
Our BiCIKL project (Biodiversity Community Integrated Knowledge Library) will support free-of-charge publications* submitted to the dedicated topical collection: “Linking FAIR biodiversity data through publications: The BiCIKL approach” in the Biodiversity Data Journal, demonstrating advanced publishing methods of linked biodiversity data, so that they can be easily harvested, distributed and re-used to generate new knowledge.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/0a3imv12qpz8x053ojqpj66.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/0a3imv12qpz8x053ojqpj66.json
new file mode 100644
index 000000000000..c1bf50bc01f9
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/0a3imv12qpz8x053ojqpj66.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"0a3imv12qpz8x053ojqpj66","title":"2023-07-06","desc":"","updated":1688664755826,"created":1688664722778,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.07.06","type":"note","vault":{"fsPath":"vault"},"contentHash":"0f568e1572dd8905c1e714cd013b7e14","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2023.07.06","id":"0a3imv12qpz8x053ojqpj66","vaultName":"vault"},"value":"workshops.2023","position":{"start":{"line":18,"column":1,"offset":263},"end":{"line":18,"column":19,"offset":281},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"workshops.2023"}}],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":28,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":30,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":32,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":34,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":36,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":37,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":38,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":41,"column":0,"depth":2}},"children":[],"parent":"vvcscq2gtvhdsmtmbqfqjqb","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/0bk7p9zzzprst7m2v5f22yi.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/0bk7p9zzzprst7m2v5f22yi.json
new file mode 100644
index 000000000000..32a33fd2960a
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/0bk7p9zzzprst7m2v5f22yi.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"0bk7p9zzzprst7m2v5f22yi","title":"2023-05-01","desc":"","updated":1682951385472,"created":1682950475793,"traitIds":["open-notebook-ebruelhart"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2023.05.01","type":"note","vault":{"fsPath":"vault"},"contentHash":"19c2865882e76393fd9217eb466dd941","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":16,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":18,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":20,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":41,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":43,"column":0,"depth":1}},"children":[],"parent":"2cv0y9hikhbt1jjla689ern","data":{}},"body":"
The code is made to adapt. It signifies that if we create a new project or a new layer, it will be integrated. If a project is created, don't forget to add the dbgi user as manager, because it is the one that is used to download the files.
\n
What the code is doing:
\n
\n
Downloads gpkg layers (point layers) and pictures
\n
Changes pictures names by deleting all problematic symbols and replacing white spaces by underscores
\n
Detects the CRS (Coordinates reference system) of gpkg files and converts to EPSG:4326, that is the CRS used by inat
\n
Converts the gpkg files to csv files
\n
Compresses pictures if they are bigger than 5MB (while loop with little decrease each time, so that the pictures are not compressed to heavily)
\n
Adds coordinates and dbgi code in pictures metadata to facilitate inat import.
\n
\n
Now stays some questions to finish the job correclty:
\n
\n
Which cloud to use? (already discussed about nextcloud)
\n
Where to host ? (On the field collection server or on another server)
\n
clicbot or not clicbot ? And if clicbot, how to manage it? (As inat won't be happy if they know)
\n
How to organize pictures on the cloud? (one folder per sample with folder named with dbgi code, one folder per layer, one folder per layer per upload, ...)
\n
\n
code
\n
links
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/0lwi5tl6uvt2hurrg7ycxr0.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/0lwi5tl6uvt2hurrg7ycxr0.json
new file mode 100644
index 000000000000..d26811b222ba
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/0lwi5tl6uvt2hurrg7ycxr0.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"0lwi5tl6uvt2hurrg7ycxr0","title":"2022-12-22","desc":"","updated":1671712882283,"created":1671709552473,"traitIds":["open-notebook-eb"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2022.12.22","type":"note","vault":{"fsPath":"vault"},"contentHash":"45be1024d6779c48b36e4f99e5ac6b1b","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":28,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":32,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":34,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":38,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":40,"column":0,"depth":1}},"children":[],"parent":"jb94w8oc7a9tv04izb0g544","data":{}},"body":"
2022-12-22
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2022.12.22
\n
To do
\n
\n
\n
Make a github repository to version the used csv. It will be the \"mannually changeable\" part of the project, opposed to directus that is the automated part of the project.
\n
\n
\n
Relabel the falcon with the bigger labels
\n
\n
\n
Try to host correctly the dbgi maps with geoserver
\n
\n
\n
Prepare the inserts for the mass spec analysis
\n
\n
\n
Optimize the communication between QGIS and iNaturalist
\n
\n
\n
Find a way to update CSVs with other CSVs without loosing information marked
\n
\n
\n
done
\n
\n
Make a github repository to version the used csv. It will be the \"mannually changeable\" part of the project, opposed to directus that is the automated part of the project.
\n
\n
Perspectives
\n
notes
\n
Today I succeeeded to import the JBN drone map. The solution is to clip the raster in multiple parts to not have one big file but mutliple smaller files. With that, the import is made without any problem. It should be a solution when making large areas.
\n
code
\n
links
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/0qhugwwk5i060m2fhnjj41q.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/0qhugwwk5i060m2fhnjj41q.json
new file mode 100644
index 000000000000..adcfc5ba4ab5
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/0qhugwwk5i060m2fhnjj41q.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"0qhugwwk5i060m2fhnjj41q","title":"Edefossez","desc":"","updated":1676041159129,"created":1676041119602,"custom":{},"fname":"templates.open-notebook.dbgi.edefossez","type":"note","vault":{"fsPath":"vault"},"contentHash":"aea0b43640c9bc12948fe67663ac58f4","links":[],"anchors":{"this-is-manuss-dbgi-daily-open-notebook":{"type":"header","text":"This is Manus's DBGI daily open-notebook.","value":"this-is-manuss-dbgi-daily-open-notebook","line":9,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":13,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":15,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":17,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":18,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":20,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":22,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":24,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":26,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":28,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":30,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":31,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":32,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":35,"column":0,"depth":2}},"children":[],"parent":"b51e1k7qbe6jj1quhxnag04","data":{}},"body":"
Edefossez
\n
This is Manus's DBGI daily open-notebook.
\n
Today is {{ CURRENT_YEAR }}.{{ CURRENT_MONTH }}.{{ CURRENT_DAY }}
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/0rjtydgu2hme3vo7hu0vkj8.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/0rjtydgu2hme3vo7hu0vkj8.json
new file mode 100644
index 000000000000..538b0b37384f
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/0rjtydgu2hme3vo7hu0vkj8.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.mwannier.2023.06","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345604,"created":1695629345604,"id":"0rjtydgu2hme3vo7hu0vkj8","desc":"","links":[],"anchors":{},"children":["jxf9j6qjoqn1msh4kpck98s","roromv02kixlcl9knjd9m7u","louqeug1cijcjcbxf888b09","lzywad7p2b23vp8k59a57bg","vq34odtkfcwfgq0wh3z8rsk","06xi44gydrp7m1qrvfvnpce"],"parent":"hjgld8jupnd9k7kzqe0ubra","data":{},"title":"06"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/0vmlfdyfcb6leokids8p9ak.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/0vmlfdyfcb6leokids8p9ak.json
new file mode 100644
index 000000000000..e6e4405304fa
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/0vmlfdyfcb6leokids8p9ak.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"0vmlfdyfcb6leokids8p9ak","title":"2023-04-20","desc":"","updated":1681994298654,"created":1681978909351,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.04.20","type":"note","vault":{"fsPath":"vault"},"contentHash":"edb93d8cf78b29eac5938902f608f555","links":[],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":19,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":22,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":23,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":25,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":27,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":29,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":33,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":35,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":37,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":38,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":39,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":42,"column":0,"depth":2}},"children":[],"parent":"kc7cc1lgen7049um6b9vb1q","data":{}},"body":"
2023-04-20
\n
This is Audrey's DBGI daily open-notebook.
\n
Today is 2023.04.20
\n
Todo today
\n
\n
find a way to remove the lock mass from Bruker analysis
On MS Convert, removing of the three lock mass (299;622;1222 with t=0.1)\n=> no working
\n\n
\n
Notes
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/0ws1ec7jyww4ks747qv1amt.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/0ws1ec7jyww4ks747qv1amt.json
new file mode 100644
index 000000000000..5ad3e60b5468
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/0ws1ec7jyww4ks747qv1amt.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"0ws1ec7jyww4ks747qv1amt","title":"2023-08-08","desc":"","updated":1691497627810,"created":1691496227081,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.08.08","type":"note","vault":{"fsPath":"vault"},"contentHash":"f0c075b6b2787b8da156357fecf24203","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"discussion-with-luca":{"type":"header","text":"Discussion with Luca","value":"discussion-with-luca","line":24,"column":0,"depth":3},"paused":{"type":"header","text":"Paused","value":"paused","line":34,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":36,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":38,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":40,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":42,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":43,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":44,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":47,"column":0,"depth":2}},"children":[],"parent":"9gjxhmy8g78ehub7udeszxy","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/0xohd77tmw9oh150mmfwi4h.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/0xohd77tmw9oh150mmfwi4h.json
new file mode 100644
index 000000000000..37804f37bae8
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/0xohd77tmw9oh150mmfwi4h.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"0xohd77tmw9oh150mmfwi4h","title":"2023-04-21","desc":"","updated":1682290834925,"created":1682067289669,"traitIds":["open-notebook-ebruelhart"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2023.04.21","type":"note","vault":{"fsPath":"vault"},"contentHash":"2c97cc518486d122e916eb8a93bbece1","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.ebruelhart.2023.04.21","id":"0xohd77tmw9oh150mmfwi4h","vaultName":"vault"},"value":"tags.Server","alias":"#Server","position":{"start":{"line":26,"column":1,"offset":435},"end":{"line":26,"column":8,"offset":442},"indent":[]},"xvault":false,"to":{"fname":"tags.Server"}},{"type":"wiki","from":{"fname":"open-notebook.dbgi.ebruelhart.2023.04.21","id":"0xohd77tmw9oh150mmfwi4h","vaultName":"vault"},"value":"tags.List","alias":"#List","position":{"start":{"line":30,"column":1,"offset":581},"end":{"line":30,"column":6,"offset":586},"indent":[]},"xvault":false,"to":{"fname":"tags.List"}},{"type":"wiki","from":{"fname":"open-notebook.dbgi.ebruelhart.2023.04.21","id":"0xohd77tmw9oh150mmfwi4h","vaultName":"vault"},"value":"tags.Create","alias":"#Create","position":{"start":{"line":33,"column":1,"offset":668},"end":{"line":33,"column":8,"offset":675},"indent":[]},"xvault":false,"to":{"fname":"tags.Create"}},{"type":"wiki","from":{"fname":"open-notebook.dbgi.ebruelhart.2023.04.21","id":"0xohd77tmw9oh150mmfwi4h","vaultName":"vault"},"value":"tags.Loops","alias":"#Loops","position":{"start":{"line":38,"column":1,"offset":772},"end":{"line":38,"column":7,"offset":778},"indent":[]},"xvault":false,"to":{"fname":"tags.Loops"}},{"type":"wiki","from":{"fname":"open-notebook.dbgi.ebruelhart.2023.04.21","id":"0xohd77tmw9oh150mmfwi4h","vaultName":"vault"},"value":"tags.Create","alias":"#Create","position":{"start":{"line":47,"column":1,"offset":1037},"end":{"line":47,"column":8,"offset":1044},"indent":[]},"xvault":false,"to":{"fname":"tags.Create"}},{"type":"wiki","from":{"fname":"open-notebook.dbgi.ebruelhart.2023.04.21","id":"0xohd77tmw9oh150mmfwi4h","vaultName":"vault"},"value":"tags.Little","alias":"#Little","position":{"start":{"line":51,"column":1,"offset":1190},"end":{"line":51,"column":8,"offset":1197},"indent":[]},"xvault":false,"to":{"fname":"tags.Little"}},{"type":"wiki","from":{"fname":"open-notebook.dbgi.ebruelhart.2023.04.21","id":"0xohd77tmw9oh150mmfwi4h","vaultName":"vault"},"value":"tags.filenames","alias":"#filenames","position":{"start":{"line":63,"column":1,"offset":1434},"end":{"line":63,"column":11,"offset":1444},"indent":[]},"xvault":false,"to":{"fname":"tags.filenames"}},{"type":"wiki","from":{"fname":"open-notebook.dbgi.ebruelhart.2023.04.21","id":"0xohd77tmw9oh150mmfwi4h","vaultName":"vault"},"value":"tags.for","alias":"#for","position":{"start":{"line":65,"column":1,"offset":1481},"end":{"line":65,"column":5,"offset":1485},"indent":[]},"xvault":false,"to":{"fname":"tags.for"}}],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"graph-treatment":{"type":"header","text":"graph treatment","value":"graph-treatment","line":16,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":20,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":22,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":24,"column":0,"depth":1},"extract-filename-using-regex":{"type":"header","text":"extract filename using regex","value":"extract-filename-using-regex","line":72,"column":0,"depth":1},"filename--researchrwgpkg-itemname":{"type":"header","text":"filename = re.search(r'(\\w+).gpkg', item'name')","value":"filename--researchrwgpkg-itemname","line":74,"column":0,"depth":1},"if-filename":{"type":"header","text":"if filename:","value":"if-filename","line":75,"column":0,"depth":1},"filenamesappendfilenamegroup1":{"type":"header","text":"filenames.append(filename.group(1))","value":"filenamesappendfilenamegroup1","line":76,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":78,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":80,"column":0,"depth":1}},"children":[],"parent":"tdh4km6qoyitvdxue4dqxlp","data":{}},"body":"
2023-04-21
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2023.04.21
\n
To do
\n
graph treatment
\n
Doc pour mzmine: sur le site de GNPS
\n
done
\n
Perspectives
\n
notes
\n
Today I'm experiencing some stuff to make an automated way to export and manage QFieldcloud data. Here is a code storage, in case I have some troubles with the original one:
#List (Private) the different projects for the specified user\nprojects = client.list_projects()
\n
#Create (Private) the variables to stores projects ids and projects names\nprojects_names = []\nprojects_ids = []
\n
#Loops (Private) over the projects list and extracts the ids and names\nfor d in projects:\nfor key, value in d.items():\nif key.startswith('id'):\nprojects_ids.append(value)\nelif key.startswith('name'):\nprojects_names.append(value)
\n
#Create (Private) the variable names list to store each files list for each project\nvariables_list = [project_name + '_list' for project_name in projects_names]
\n
#Little (Private) loop to extract files lists for each project\nfiles_dict = {}
\n
for i, id in enumerate(projects_ids):\nkey = variables_list[i]\nfiles_dict[key] = client.list_remote_files(project_id=id)
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/162yano91jna1gh3m9qou3k.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/162yano91jna1gh3m9qou3k.json
new file mode 100644
index 000000000000..b21452152450
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/162yano91jna1gh3m9qou3k.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"scratch","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345620,"created":1695629345620,"id":"162yano91jna1gh3m9qou3k","desc":"","links":[],"anchors":{},"children":["nfc206twvthy35t1p9r5x53"],"parent":"txkHnVTI9AawnquiublXO","data":{},"title":"Scratch"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/165zhtrhauww30lf9dbp8fa.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/165zhtrhauww30lf9dbp8fa.json
new file mode 100644
index 000000000000..00ac6b73bbc8
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/165zhtrhauww30lf9dbp8fa.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"165zhtrhauww30lf9dbp8fa","title":"Ressources","desc":"","updated":1670342871713,"created":1648461376735,"custom":{},"fname":"ressources","type":"note","vault":{"fsPath":"vault"},"contentHash":"082e042705a7642816d9fc5afdff2758","links":[{"type":"wiki","from":{"fname":"ressources","id":"165zhtrhauww30lf9dbp8fa","vaultName":"vault"},"value":"user.edouardbruelhart","alias":"@edouardbruelhart","position":{"start":{"line":11,"column":1,"offset":174},"end":{"line":11,"column":18,"offset":191},"indent":[]},"xvault":false,"to":{"fname":"user.edouardbruelhart"}}],"anchors":{},"children":["j3jsdxtx10sz97uy306240h"],"parent":"txkHnVTI9AawnquiublXO","data":{}},"body":"
Ressources
\n
Found this interesting initiative while looking for the DBGI repo via google ...
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/19o3nwq1e2cbfwun1sbw2p5.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/19o3nwq1e2cbfwun1sbw2p5.json
new file mode 100644
index 000000000000..8d5cd187e6d6
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/19o3nwq1e2cbfwun1sbw2p5.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"19o3nwq1e2cbfwun1sbw2p5","title":"2023-01-05","desc":"","updated":1673044466885,"created":1672950372336,"traitIds":["open-notebook-eb"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2023.01.05","type":"note","vault":{"fsPath":"vault"},"contentHash":"87295226453e236dda1406fef2d18320","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":26,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":28,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":30,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":34,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":36,"column":0,"depth":1}},"children":[],"parent":"rwwstq9pnk2fqonf946x951","data":{}},"body":"
2023-01-05
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2023.01.05
\n
To do
\n
\n
\n
Relabel the falcon with the bigger labels
\n
\n
\n
Try to host correctly the dbgi maps with geoserver (actually delayed)
\n
\n
\n
Prepare the inserts for the mass spec analysis
\n
\n
\n
Optimize the communication between QGIS and iNaturalist
\n
\n
\n
If time, automatize the process of printing label, by writing a code that automatically selects 189 (number of labels on one page) free dbgi codes on the directus database, and add them to an excel sheet, ready to print.
\n
\n
\n
done
\n
Perspectives
\n
notes
\n
batch edition seems possible. I began to create a R code that will change the device coordinates by the coordinates indicated in QField for the placed point. I'll try it harder tomorrow.
\n
code
\n
links
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/1ff9srw4s1viczhhhgrq4hu.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/1ff9srw4s1viczhhhgrq4hu.json
new file mode 100644
index 000000000000..edb5ca7a4738
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/1ff9srw4s1viczhhhgrq4hu.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"scratch.2023.08.09","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345620,"created":1695629345620,"id":"1ff9srw4s1viczhhhgrq4hu","desc":"","links":[],"anchors":{},"children":["1v5plece6ufaat126c84mw2"],"parent":"06t1xeogkiiks197mr73z7m","data":{},"title":"09"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/1fvjvyoe6havg79ke34b07n.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/1fvjvyoe6havg79ke34b07n.json
new file mode 100644
index 000000000000..2b704584ec74
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/1fvjvyoe6havg79ke34b07n.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"1fvjvyoe6havg79ke34b07n","title":"Rees_2017","desc":"","updated":1656059639673,"created":1656059639673,"isDir":false,"custom":{"isDir":false},"fname":"biblio.rees_2017","type":"note","vault":{"fsPath":"vault"},"contentHash":"d5adad5d8cbd5018519ab3d83c3ff9da","links":[{"type":"wiki","from":{"fname":"biblio.rees_2017","id":"1fvjvyoe6havg79ke34b07n","vaultName":"vault"},"value":"article","position":{"start":{"line":5,"column":14,"offset":104},"end":{"line":5,"column":25,"offset":115},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"article"}},{"type":"wiki","from":{"fname":"biblio.rees_2017","id":"1fvjvyoe6havg79ke34b07n","vaultName":"vault"},"value":"jonathan-rees","position":{"start":{"line":6,"column":12,"offset":127},"end":{"line":6,"column":29,"offset":144},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"jonathan-rees"}},{"type":"wiki","from":{"fname":"biblio.rees_2017","id":"1fvjvyoe6havg79ke34b07n","vaultName":"vault"},"value":"karen-cranston","position":{"start":{"line":6,"column":31,"offset":146},"end":{"line":6,"column":49,"offset":164},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"karen-cranston"}},{"type":"wiki","from":{"fname":"biblio.rees_2017","id":"1fvjvyoe6havg79ke34b07n","vaultName":"vault"},"value":"2017-05-22","position":{"start":{"line":7,"column":9,"offset":173},"end":{"line":7,"column":23,"offset":187},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2017-05-22"}},{"type":"wiki","from":{"fname":"biblio.rees_2017","id":"1fvjvyoe6havg79ke34b07n","vaultName":"vault"},"value":"2022-03-01","position":{"start":{"line":8,"column":15,"offset":202},"end":{"line":8,"column":29,"offset":216},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-03-01"}},{"type":"wiki","from":{"fname":"biblio.rees_2017","id":"1fvjvyoe6havg79ke34b07n","vaultName":"vault"},"value":"taxonomy","position":{"start":{"line":12,"column":11,"offset":417},"end":{"line":12,"column":23,"offset":429},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"taxonomy"}},{"type":"wiki","from":{"fname":"biblio.rees_2017","id":"1fvjvyoe6havg79ke34b07n","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":13,"column":3,"offset":432},"end":{"line":13,"column":10,"offset":439},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio.rees_2017","id":"1fvjvyoe6havg79ke34b07n","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":13,"column":12,"offset":441},"end":{"line":13,"column":29,"offset":458},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio.rees_2017","id":"1fvjvyoe6havg79ke34b07n","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":13,"column":31,"offset":460},"end":{"line":13,"column":41,"offset":470},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}}],"anchors":{"automated-assembly-of-a-reference-taxonomy-for-phylogenetic-data-synthesis":{"type":"header","text":"Automated assembly of a reference taxonomy for phylogenetic data synthesis","value":"automated-assembly-of-a-reference-taxonomy-for-phylogenetic-data-synthesis","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":25,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
Rees_2017
\n
Automated assembly of a reference taxonomy for phylogenetic data synthesis
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/1kpxcgpbut7c2ud1i3glf9z.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/1kpxcgpbut7c2ud1i3glf9z.json
new file mode 100644
index 000000000000..ae85ee09a917
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/1kpxcgpbut7c2ud1i3glf9z.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"1kpxcgpbut7c2ud1i3glf9z","title":"2023-05-26","desc":"","updated":1685083746007,"created":1685081861034,"traitIds":["open-notebook-lschwegler"],"custom":{},"fname":"open-notebook.dbgi.lschwegler.2023.05.26","type":"note","vault":{"fsPath":"vault"},"contentHash":"7548cc93aa334aa6bd50a0698450b799","links":[],"anchors":{"this-is-lenditas-dbgi-daily-open-notebook":{"type":"header","text":"This is Lendita's DBGI daily open-notebook.","value":"this-is-lenditas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":23,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":25,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":27,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":31,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":33,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":34,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":35,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":38,"column":0,"depth":2}},"children":[],"parent":"giitkp9yhfqe7cosjgh4t6h","data":{}},"body":"
After working more on the theory the last few days, I am now happy that I found energy today and was able to do my last practical part.\nI'm also glad that all the samples are finally dry. Now I have weighed all the samples and they are ready for the last round of extraction by Edouard and then the injection that Pierre-Marie will do.
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/1lx4xxsdtsdw9dmhzsb7m5q.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/1lx4xxsdtsdw9dmhzsb7m5q.json
new file mode 100644
index 000000000000..a528795666cb
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/1lx4xxsdtsdw9dmhzsb7m5q.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"1lx4xxsdtsdw9dmhzsb7m5q","title":"2022-11-14","desc":"","updated":1668671685666,"created":1668433136245,"traitIds":["open-notebook-mw"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2022.11.14","type":"note","vault":{"fsPath":"vault"},"contentHash":"7f28ebc66b2931deb0c79c7c5b62207c","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"how-to-get-the-emi_external_id-from-the-ofvs-column":{"type":"header","text":"How to get the EMI_External_id from the ofvs column","value":"how-to-get-the-emi_external_id-from-the-ofvs-column","line":16,"column":0,"depth":2}},"children":[],"parent":"2n9ssq0hbel5s1n7o4aiqhl","data":{}},"body":"
2022-11-14
\n
This is Maëlle's DBGI daily open-notebook.
\n
Today is 2022.11.14
\n
How to get the EMI_External_id from the ofvs column
\n
Problem: associated to 'value_ci' but dbgi_id also associated to 'value_ci'
limit of length\n=> (?<='value_ci': ')(.{1,30})(?=', 'name': 'emi_external_id')\n=> seems to work but how long should it be?
\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/1n9kw635ospnbwjvismwj9u.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/1n9kw635ospnbwjvismwj9u.json
new file mode 100644
index 000000000000..c71ffe2e2d11
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/1n9kw635ospnbwjvismwj9u.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"1n9kw635ospnbwjvismwj9u","title":"2023-06-15","desc":"","updated":1686847854180,"created":1686813851132,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.06.15","type":"note","vault":{"fsPath":"vault"},"contentHash":"cd14db71fde73a7ca22e7b17772c8473","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"meeting-on-the-emi-semantic-model":{"type":"header","text":"Meeting on the EMI semantic model","value":"meeting-on-the-emi-semantic-model","line":24,"column":0,"depth":3},"hard-copy-of-the-meetings-notes":{"type":"header","text":"Hard copy of the meetings notes","value":"hard-copy-of-the-meetings-notes","line":61,"column":0,"depth":4},"meeting-on-the-emi-semantic-model-1":{"type":"header","text":"Meeting on the EMI semantic model","value":"meeting-on-the-emi-semantic-model-1","line":65,"column":0,"depth":3},"workshop-by-luca-on-gnn":{"type":"header","text":"Workshop by Luca on GNN","value":"workshop-by-luca-on-gnn","line":110,"column":0,"depth":3},"paused":{"type":"header","text":"Paused","value":"paused","line":151,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":153,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":155,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":157,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":159,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":160,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":161,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":164,"column":0,"depth":2}},"children":[],"parent":"8duum2njm3z1sm4nnvgy93s","data":{}},"body":"
Tarcisio reserved prefixes dbgi / emi at prefix.cc and purl.
\n
\n
Luca mentionned that we should think beforehand on the problems that could arise from having highly connected nodes (stars) such as a node ISDB linked to from all annotations with a has_ISDB_annotation edge.
- Define Meta-Model in addition to Semantic Model\n- Allows topological embedding of the classes, defining fully a distance between the classes that can be used in general ML tasks\n- allows explicitly defining Metadata classes (e.g. \"Information Source\") and properties\n
\n
\n
\n
allows Quality Control through e.g. disjointness / other constraints, e.g. whenever InChiKey is present in the data -> InChiKey2D should be present
\n
\n
\n
Can be concretely implemented as a suite of tests to run as part of GitHub repository associated to data / data quality continuous integration
\n
\n
\n
Topological checks may be integrated as part of the continuous integration - e.g. adding elements that become singletons should not be allowed for release versions
BioLink can be an inspiration, but has also known problem and some aspects should not be imitated
\n
\n
\n
Next meeting we can list specifically these aspects which we should take care of not reproducing.
\n
\n
\n
Add explicit, \"verbose\" descriptions to classes in addition to simple labels
\n
\n
\n
Allows to use the textual embedding as part of features for ML models
\n
\n
\n
how about retrieving these via cross-references whenever possible? e.g. the cross-refs to WikiData items
\n
\n
\n
Logo associated to project
\n
\n
\n
Possible logos may be created using tools such as MidJourney (examples provided on the Zulip platform)
\n
\n
\n
For next meeting:
\n
- Microbiological data: https://microbiomedata.org/\n- Where will the data release be available from? Zenodo? Internet Archive? In what formats?\n- For now ENPKG related graphs are versionned at Zenodo (https://zenodo.org/communities/enpkg/?page=1&size=20) still grouped by batches (here 96 well plates). We will work on moving to 1 profile = 1 Zenodo repo. (Note that frictionless can do quality control on Zenodo archives, would work very well on case we have the graph in a tsv format) \n- The GRAPE library can ingest TSV / CSV formats from urls, any server accessible with get requests will do\n- discuss Quality Control options - at what level should constraints be defined? \n- OWL language? SHACL? Meta-model constraints + Github tests where adding bogus new elements should not be allowable\n
\n
\n
ML model that indicates possible missing fields / incorrect new data you are trying to add based on the existing data already in the graphical
\n
\n
Workshop by Luca on GNN
\n
Justin Reese indicates these meetings each 2 weeks
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/1pp8t915arv21vol7xltu9e.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/1pp8t915arv21vol7xltu9e.json
new file mode 100644
index 000000000000..b1d0bf441f22
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/1pp8t915arv21vol7xltu9e.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"workshops.2023.07","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345553,"created":1695629345553,"id":"1pp8t915arv21vol7xltu9e","desc":"","links":[],"anchors":{},"children":["5xi2kxvk62vfhpjcy6re666"],"parent":"nis3qb90g3x913svoftvdss","data":{},"title":"07"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/1q243ek7squ2wi7kdahksyu.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/1q243ek7squ2wi7kdahksyu.json
new file mode 100644
index 000000000000..8a7cdab8bdca
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/1q243ek7squ2wi7kdahksyu.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"1q243ek7squ2wi7kdahksyu","title":"2023-05-01","desc":"","updated":1682958459412,"created":1682920754655,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.05.01","type":"note","vault":{"fsPath":"vault"},"contentHash":"12d452e1faba7d9ea681007cb59bb55d","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":28,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":30,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":33,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":37,"column":0,"depth":2}},"children":[],"parent":"kpf9zs71io037d9pc13w2ky","data":{}},"body":"
Goal of the week: redo everything except the graphs
\n
Next week: graph with D3.js
\n
\n
\n
\n
CODE
\n
NOTES
\n
TODO NEXT
\n
Important for redaction
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/1srqa4bq55julyh3pikhzyh.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/1srqa4bq55julyh3pikhzyh.json
new file mode 100644
index 000000000000..f46092c83925
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/1srqa4bq55julyh3pikhzyh.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"1srqa4bq55julyh3pikhzyh","title":"2023-02-27","desc":"","updated":1677507274854,"created":1677482099947,"traitIds":["open-notebook-ebruelhart"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2023.02.27","type":"note","vault":{"fsPath":"vault"},"contentHash":"3b77939f5b195c8a3d3d2fad480ced53","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":16,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":18,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":20,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":28,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":30,"column":0,"depth":1}},"children":[],"parent":"1txptky63b0ed756t77pgub","data":{}},"body":"
2023-02-27
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2023.02.27
\n
To do
\n
done
\n
Perspectives
\n
notes
\n
I'm trying to find an alternative to QField as it is no more free to use. Here I found a project that seems really cool: http://www.openmapkit.org/. I'll try it to define if it is adapted to our needs.
\n
Badly http://www.openmapkit.org/ is deprecated. however, https://getodk.org/ seems to be really good. There are no IOS application, but we can use a webapp. On android an application is available.
\n
I found that I can host a version of QField Cloud, so that we would have the same setup as now, but with self-hosted data.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/1txptky63b0ed756t77pgub.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/1txptky63b0ed756t77pgub.json
new file mode 100644
index 000000000000..86798fbe9c2c
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/1txptky63b0ed756t77pgub.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.ebruelhart.2023.02","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345579,"created":1695629345579,"id":"1txptky63b0ed756t77pgub","desc":"","links":[],"anchors":{},"children":["s4yrrlsfdr7hzpua0oymim6","rk9oklb4re880xcje8k6vms","fiwt2izex1cfte3zo4xbnmr","1srqa4bq55julyh3pikhzyh"],"parent":"oa2ug1z440tznkfspdpf4fz","data":{},"title":"02"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/1u37mlza55e6dgksabcv7qn.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/1u37mlza55e6dgksabcv7qn.json
new file mode 100644
index 000000000000..b0155dcc3268
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/1u37mlza55e6dgksabcv7qn.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"1u37mlza55e6dgksabcv7qn","title":"DBGI QGIS plugin","desc":"","updated":1689776414016,"created":1684843029214,"custom":{},"fname":"DBGI QGIS plugin","type":"note","vault":{"fsPath":"vault"},"contentHash":"355c58b0c9b714a89772bec52d477b57","links":[],"anchors":{"welcome-to-the-dbgi-plugin-page":{"type":"header","text":"Welcome to the DBGI plugin page!","value":"welcome-to-the-dbgi-plugin-page","line":7,"column":0,"depth":1},"this-plugin-aims-to-suit-the-needs-for-the-dbgi-project-on-qgis":{"type":"header","text":"This plugin aims to suit the needs for the DBGI project on QGIS.","value":"this-plugin-aims-to-suit-the-needs-for-the-dbgi-project-on-qgis","line":9,"column":0,"depth":2},"description":{"type":"header","text":"Description:","value":"description","line":11,"column":0,"depth":3},"example-of-use":{"type":"header","text":"Example of use:","value":"example-of-use","line":19,"column":0,"depth":3},"1-install-the-plugin":{"type":"header","text":"1. Install the plugin:","value":"1-install-the-plugin","line":21,"column":0,"depth":4},"2-create-a-geopackage-for-the-dbgi-project":{"type":"header","text":"2. Create a geopackage for the DBGI project:","value":"2-create-a-geopackage-for-the-dbgi-project","line":25,"column":0,"depth":4},"3-sync-back-with-qfieldcloud":{"type":"header","text":"3. Sync back with QFieldCloud","value":"3-sync-back-with-qfieldcloud","line":33,"column":0,"depth":4}},"children":[],"parent":"txkHnVTI9AawnquiublXO","data":{}},"body":"
DBGI QGIS plugin
\n
Welcome to the DBGI plugin page!
\n
This plugin aims to suit the needs for the DBGI project on QGIS.
\n
Description:
\n
For instance, this plugin performs two tasks:
\n
\n
Creating geopackage layers for the Digital Botanical Gardens Initiative project
\n
Modifying deprecated geopackage layers created with the v0.1 of this plugin
\n
\n
In the future, this plugin could eventually perform more tasks depending on te DBGI project's needs.
\n
Example of use:
\n
1. Install the plugin:
\n
\n
Open QGIS, go to Plugins -> Manage And Install Plugins... -> All -> DBGI
\n
Or download the zipped plugin here, open QGIS and go to Plugins -> Manage And Install Plugins... -> Install from ZIP and select the zipped file to install it.
\n
\n
2. Create a geopackage for the DBGI project:
\n
\n
Open the needed QGIS project (to know how to do it, go there )
\n
In QGIS go to Vector -> DBGI -> Create a DBGI geopackage
\n
Enter the name of your geopackage (no white space please)
\n
Choose the species names layer (.csv or .gpkg). If there is no species names layer, add one to the project (A new feature will come if no species names layer available, work in progress...)
\n
Choose the field in the species names layer that contains the binomial nomenclature
\n
Save with ctrl + s. Your new layer is now added to the QGIS project.
\n
\n
3. Sync back with QFieldCloud
\n
\n
In the QGIS project, go to Plugins -> QFieldSync -> Syncrhronize Current Cloud Project
\n
!!! Warning !!! At this step you could corrupt the project. So make sure to click on Prefer cloud, and then tick under the little laptop icon only your layer (your_layer_name.gpkg), the cloud attachment (extension _attachment.zip) and the project (extension .qgs) (Figure 1).
\n
\n
Figure 1: Add the layer to the cloud project
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/1v5plece6ufaat126c84mw2.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/1v5plece6ufaat126c84mw2.json
new file mode 100644
index 000000000000..8e252fbc9d90
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/1v5plece6ufaat126c84mw2.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"scratch.2023.08.09.103257","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345620,"created":1695629345620,"id":"1v5plece6ufaat126c84mw2","desc":"","links":[],"anchors":{},"children":["1zjozmiisx66kr2wbj8t5uw"],"parent":"1ff9srw4s1viczhhhgrq4hu","data":{},"title":"103257"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/1vo69r0qd207hj0y9fonld1.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/1vo69r0qd207hj0y9fonld1.json
new file mode 100644
index 000000000000..b46634281d2c
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/1vo69r0qd207hj0y9fonld1.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.commons","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345557,"created":1695629345557,"id":"1vo69r0qd207hj0y9fonld1","desc":"","links":[],"anchors":{},"children":["jivkfmfjowhi82dgigqp7vy"],"parent":"k75suoydmrafnd5wl2tar2u","data":{},"title":"Commons"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/1zjozmiisx66kr2wbj8t5uw.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/1zjozmiisx66kr2wbj8t5uw.json
new file mode 100644
index 000000000000..46ac32445041
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/1zjozmiisx66kr2wbj8t5uw.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"1zjozmiisx66kr2wbj8t5uw","title":"Plant_structure_po","desc":"","updated":1691570024585,"created":1691569980122,"custom":{},"fname":"scratch.2023.08.09.103257.plant_structure_po","type":"note","vault":{"fsPath":"vault"},"contentHash":"782173fe422c6d55b1cf0dec1f18fb25","links":[{"from":{"fname":"open-notebook.dbgi.pmallard.2023.08.09","id":"cm2e2wpc8piw6qco896meya","vaultName":"vault"},"type":"backlink","position":{"start":{"line":189,"column":1,"offset":10364},"end":{"line":189,"column":68,"offset":10431},"indent":[]},"value":"scratch.2023.08.09.103257.plant_structure_po"}],"anchors":{},"children":[],"parent":"1v5plece6ufaat126c84mw2","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/201sb3u0xjqdjeqmvz4hh7w.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/201sb3u0xjqdjeqmvz4hh7w.json
new file mode 100644
index 000000000000..1a9e5cb72f58
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/201sb3u0xjqdjeqmvz4hh7w.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"201sb3u0xjqdjeqmvz4hh7w","title":"2022-12-22","desc":"","updated":1671705521839,"created":1671697513417,"traitIds":["open-notebook-mw"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2022.12.22","type":"note","vault":{"fsPath":"vault"},"contentHash":"34cbe6d3e81c1d49e1e0ab3832a8194b","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":22,"column":0,"depth":2},"autoincrementation":{"type":"header","text":"autoincrementation","value":"autoincrementation","line":24,"column":0,"depth":3},"notes":{"type":"header","text":"NOTES","value":"notes","line":41,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":46,"column":0,"depth":2}},"children":[],"parent":"rio2nla30r2q15iabe8v1dh","data":{}},"body":"
2022-12-22
\n
This is Maëlle's DBGI daily open-notebook.
\n
Today is 2022.12.22
\n
TODO
\n
\n
link naturalist id pyinat-samples => solve problem => always the same id
\n
autoincrementation id
\n
tuto for dummy
\n
\n
CODE
\n
autoincrementation
\n
CREATE SEQUENCE 'xxx';\n\nSELECT setval('xxx',1057); #begin the sequence at 1057\n\nALTER TABLE samples \nALTER COLUMN \"DBGI_SPL_ID\"\nSET DEFAULT 'dbgi_' || lpad(nextval('xxx')::VARCHAR,6,'0'); #pad the sequence\n\n\nALTER TABLE samples \nADD CONSTRAINT valid_id_check\nCHECK (\"DBGI_SPL_ID\" ~ '^\\w+_[0-9]+$'); #check that the id is correct\n
\n
NOTES
\n
Tried to import a csv without setting the dbgi_spl_id => the id is autoincremented when imported!
\n
TODO NEXT
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/20mx26zgvnr7cc5nucidveu.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/20mx26zgvnr7cc5nucidveu.json
new file mode 100644
index 000000000000..4b213ff9aeec
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/20mx26zgvnr7cc5nucidveu.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.pmallard.2023.03","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345609,"created":1695629345609,"id":"20mx26zgvnr7cc5nucidveu","desc":"","links":[],"anchors":{},"children":["bo108ix90a9ywbkbgtghxym","d68hrdr6hfb2cin8tpzpivq","5e8mwuzcvsa1op9fd5apt8e","8ydxt86g2zi3p99fraumr29","ihhg3osvy26wih9yn07tewx","za219ohh6orf6x1y7fvrkxh","kce3yv1v6lcse3zuvmb9hfz","dfj04lm9swzeg51xcbpgt5v"],"parent":"kdf7w680pcf9ofqywy9qgyl","data":{},"title":"03"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/22h93l5bcgcf49juco6999m.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/22h93l5bcgcf49juco6999m.json
new file mode 100644
index 000000000000..0eb6c925c552
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/22h93l5bcgcf49juco6999m.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"22h93l5bcgcf49juco6999m","title":"2022-11-06","desc":"","updated":1667821228692,"created":1667733178073,"traitIds":["open-notebook-pma"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2022.11.06","type":"note","vault":{"fsPath":"vault"},"contentHash":"be0018bbc536cf64cfaf70f5bc0b37e0","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"":{"type":"header","text":"","value":"","line":16,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":17,"column":0,"depth":3},"-2":{"type":"header","text":"","value":"-2","line":18,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":20,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":22,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":24,"column":0,"depth":2},"talked-with-joelle-houriet":{"type":"header","text":"Talked with Joelle Houriet","value":"talked-with-joelle-houriet","line":26,"column":0,"depth":3},"notes":{"type":"header","text":"Notes","value":"notes","line":33,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":35,"column":0,"depth":2},"-3":{"type":"header","text":"","value":"-3","line":37,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":38,"column":0,"depth":3},"-5":{"type":"header","text":"","value":"-5","line":39,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":42,"column":0,"depth":2}},"children":[],"parent":"zrjj57h4vzxsgrmg86kfq9y","data":{}},"body":"
2022-11-06
\n
This is PMA's DBGI daily open-notebook.
\n
Today is 2022.11.06
\n
Todo today
\n
\n
\n
\n
Doing
\n
Paused
\n
Done
\n
Talked with Joelle Houriet
\n
Presented the DBGI slides to Joëlle who remarked that oon the slides Lab plants / Botanical Gardens / Wild Ecosystems we are letting aside (or their is no place) for crops and plants cultivated by humans for food purposes (or medicinal purposes also).\nWe definitively want to include these plants in the Earth Metabolome Initiative so maybe crops should be illustrated in this slide.
\n
Notes
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/29snrplphmlppuhnz6bclo6.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/29snrplphmlppuhnz6bclo6.json
new file mode 100644
index 000000000000..c92be9455733
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/29snrplphmlppuhnz6bclo6.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"meetings.2023.02.22","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345554,"created":1695629345554,"id":"29snrplphmlppuhnz6bclo6","desc":"","links":[],"anchors":{},"children":["33r62tekbrtckkfadan4kwj","bjbdnlx9t9rmqt5uw39flf2"],"parent":"or085pr2mnvvpcg7pwmqbuk","data":{},"title":"22"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/2brymurxjvzna9waixemuna.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/2brymurxjvzna9waixemuna.json
new file mode 100644
index 000000000000..4cb83f93564d
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/2brymurxjvzna9waixemuna.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"2brymurxjvzna9waixemuna","title":"2023-05-03","desc":"","updated":1683817421778,"created":1683097779986,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.05.03","type":"note","vault":{"fsPath":"vault"},"contentHash":"6142399b95de3802b21e6db82654148f","links":[],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":21,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":24,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":25,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":27,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":75,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":77,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":79,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":83,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":88,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":89,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":90,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":93,"column":0,"depth":2}},"children":[],"parent":"tvdn3jw4nqebyf7hozvvddb","data":{}},"body":"
2023-05-03
\n
This is Audrey's DBGI daily open-notebook.
\n
Today is 2023.05.03
\n
Todo today
\n
[] create label to collect samples next week\n[] Next Tuesday collect at jbne
deconvolution : wavelet ; auto ; 0.025 Da ; 0,15 min
\n
\n
\n
\n
isotope peak grouper : m/z 0.001 - 5 ppm ; rt 0.08 min ; max charge 2 lowest m/z
\n
\n
\n
aligment : (not the bk 1st) 0.01 m/z or 12 ppm ; RT tolerance 0.1 min
\n
\n
\n
filter : MS/MS + two ions in the isotopic pattern
\n
\n
\n
gap filling : same Rt & MS range gap filler
\n
\n
\n
check that QC are group (select feature list + feature list method - data analysis - PCA)
\n
\n
\n
feature list method - identification - adduct + complexe
\n
\n
\n
creation list metadata
\n
\n
\n
3/ FBMN on GNPS
\n
4/ Sirius
\n
Paused
\n
Done
\n
Notes
\n
Todo tomorrow
\n
\n
faire tuto nouvel arrivant\"
\n
création identifiant directus
\n
création des étiquettes
\n
\n
\n
\n
\n
Today I learned that
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/2c9rzly7t0hp97skojpcusv.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/2c9rzly7t0hp97skojpcusv.json
new file mode 100644
index 000000000000..3c28a20a0b9f
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/2c9rzly7t0hp97skojpcusv.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"2c9rzly7t0hp97skojpcusv","title":"Mirowski_2018","desc":"","updated":1656059639673,"created":1656059639673,"isDir":false,"custom":{"isDir":false},"fname":"biblio.mirowski_2018","type":"note","vault":{"fsPath":"vault"},"contentHash":"6280876146d9582431cb44209c7d6cdd","links":[{"type":"wiki","from":{"fname":"biblio.mirowski_2018","id":"2c9rzly7t0hp97skojpcusv","vaultName":"vault"},"value":"article","position":{"start":{"line":5,"column":14,"offset":59},"end":{"line":5,"column":25,"offset":70},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"article"}},{"type":"wiki","from":{"fname":"biblio.mirowski_2018","id":"2c9rzly7t0hp97skojpcusv","vaultName":"vault"},"value":"philip-mirowski","position":{"start":{"line":6,"column":12,"offset":82},"end":{"line":6,"column":31,"offset":101},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"philip-mirowski"}},{"type":"wiki","from":{"fname":"biblio.mirowski_2018","id":"2c9rzly7t0hp97skojpcusv","vaultName":"vault"},"value":"04.2018","position":{"start":{"line":7,"column":9,"offset":110},"end":{"line":7,"column":20,"offset":121},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"04.2018"}},{"type":"wiki","from":{"fname":"biblio.mirowski_2018","id":"2c9rzly7t0hp97skojpcusv","vaultName":"vault"},"value":"2022-02-28","position":{"start":{"line":8,"column":15,"offset":136},"end":{"line":8,"column":29,"offset":150},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-02-28"}},{"type":"wiki","from":{"fname":"biblio.mirowski_2018","id":"2c9rzly7t0hp97skojpcusv","vaultName":"vault"},"value":"open-science","position":{"start":{"line":12,"column":11,"offset":387},"end":{"line":12,"column":27,"offset":403},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-science"}},{"type":"wiki","from":{"fname":"biblio.mirowski_2018","id":"2c9rzly7t0hp97skojpcusv","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":13,"column":3,"offset":406},"end":{"line":13,"column":10,"offset":413},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio.mirowski_2018","id":"2c9rzly7t0hp97skojpcusv","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":13,"column":12,"offset":415},"end":{"line":13,"column":29,"offset":432},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio.mirowski_2018","id":"2c9rzly7t0hp97skojpcusv","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":13,"column":31,"offset":434},"end":{"line":13,"column":41,"offset":444},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}}],"anchors":{"the-futures-of-open-science":{"type":"header","text":"The future(s) of open science","value":"the-futures-of-open-science","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"abstract":{"type":"header","text":"Abstract","value":"abstract","line":22,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":27,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
Almost everyone is enthusiastic that ‘open science’ is the wave of the future. Yet when one looks seriously at the flaws in modern science that the movement proposes to remedy, the prospect for improvement in at least four areas are unimpressive. This suggests that the agenda is effectively to re-engineer science along the lines of platform capitalism, under the misleading banner of opening up science to the masses.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/2cv0y9hikhbt1jjla689ern.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/2cv0y9hikhbt1jjla689ern.json
new file mode 100644
index 000000000000..863a4747b1e7
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/2cv0y9hikhbt1jjla689ern.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.ebruelhart.2023.05","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345580,"created":1695629345580,"id":"2cv0y9hikhbt1jjla689ern","desc":"","links":[],"anchors":{},"children":["0bk7p9zzzprst7m2v5f22yi","u4b5rb3tmprpqfq986iswih","528nxdi7tm242o4m142jp61","yry7powqqihky4hph5k0yrd"],"parent":"oa2ug1z440tznkfspdpf4fz","data":{},"title":"05"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/2fronkvjr89kz0o5rcsyo2z.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/2fronkvjr89kz0o5rcsyo2z.json
new file mode 100644
index 000000000000..81483d9f2f4a
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/2fronkvjr89kz0o5rcsyo2z.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"2fronkvjr89kz0o5rcsyo2z","title":"2023-05-29","desc":"","updated":1685525222111,"created":1685524668738,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.05.29","type":"note","vault":{"fsPath":"vault"},"contentHash":"073980bbd6a995b3bb81b8b7a66a3f2b","links":[],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":20,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":21,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":23,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":30,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":32,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":35,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":37,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":39,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":40,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":41,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":44,"column":0,"depth":2}},"children":[],"parent":"tvdn3jw4nqebyf7hozvvddb","data":{}},"body":"
DBGI_xxxxxx_01 refer to stock vial (conserved in the freezer)
\n
DBGI_xxxxxx_01_01 refer to vial prepared on may 24th and analysed with orbitrap seq : 20230529_dbgi_alc (pos & neg)
\n
DBGI_xxxxxx_01_02 refer to vials which prepared to replaced DBGI_xxxxxx_01_01 that were not limped before injection (3 samples concerned)
\n
\n
Paused
\n
Done
\n
Notes
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/2gpzh1s85imdp4ig17g5ccj.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/2gpzh1s85imdp4ig17g5ccj.json
new file mode 100644
index 000000000000..e9c577dbfc61
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/2gpzh1s85imdp4ig17g5ccj.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"2gpzh1s85imdp4ig17g5ccj","title":"Directus","desc":"","updated":1689238136744,"created":1666246339244,"custom":{},"fname":"database.tutorial.directus","type":"note","vault":{"fsPath":"vault"},"contentHash":"82350897bee9543c5a720090500e4ffb","links":[],"anchors":{"creating-a-directus-project":{"type":"header","text":"Creating a directus project","value":"creating-a-directus-project","line":11,"column":0,"depth":2},"navigate-on-directus":{"type":"header","text":"Navigate on directus","value":"navigate-on-directus","line":15,"column":0,"depth":2},"to-stop-httpdirectusdbgiorg":{"type":"header","text":"To stop http://directus.dbgi.org","value":"to-stop-httpdirectusdbgiorg","line":29,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":35,"column":0,"depth":2},"if-httpdirectusdbgiorg-stops-running":{"type":"header","text":"If http://directus.dbgi.org stops running","value":"if-httpdirectusdbgiorg-stops-running","line":38,"column":0,"depth":2}},"children":["l5hk8footuy2893u4zi6yvs","dy871a7dv1wcjmkvrte9ex7"],"parent":"kc3mm3rc1fmmb3vzmjlh97r","data":{}},"body":"
The leftmost section of the App is the module bar which includes:
\n
- Content — The primary way to view and interact with database content\n- User Directory — A dedicated section for the platform's system Users\n- File Library — An aggregate of all files uploaded and managed within the platform\n- Insights — Access to infinitely customizable data dashboards\n- App Guide — A tailored, in-app portal for the platform's concepts, guides, and reference\n- Dendron — Link to the dendron website\n- Mailto — Link to send a mail to the administrator\n- Github — Link to dbgi github repo\n- Settings — An admin-only section for configuring the project and system settings\n
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/2izrjn4o1bpk2fn9wmxjnna.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/2izrjn4o1bpk2fn9wmxjnna.json
new file mode 100644
index 000000000000..0c381081ab42
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/2izrjn4o1bpk2fn9wmxjnna.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"2izrjn4o1bpk2fn9wmxjnna","title":"2022-03-24","desc":"","updated":1655027552114,"created":1648110171293,"traitIds":["journalNote"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2022.03.24","type":"note","vault":{"fsPath":"vault"},"contentHash":"f01bfc17da08a974a08570a63ab644cc","links":[],"anchors":{"starting-the-day":{"type":"header","text":"Starting the day","value":"starting-the-day","line":11,"column":0,"depth":2},"todays-todo":{"type":"header","text":"Today's Todo","value":"todays-todo","line":15,"column":0,"depth":3},"today-notes--ideas":{"type":"header","text":"Today Notes & ideas","value":"today-notes--ideas","line":21,"column":0,"depth":3},"ending-the-day":{"type":"header","text":"Ending the day","value":"ending-the-day","line":26,"column":0,"depth":2},"future-todo":{"type":"header","text":"Future Todo","value":"future-todo","line":28,"column":0,"depth":3}},"children":[],"parent":"oysesv3d976s837b9j76nhg","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/2je6ns4o4yc32mfy3vyxedt.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/2je6ns4o4yc32mfy3vyxedt.json
new file mode 100644
index 000000000000..6476d2432195
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/2je6ns4o4yc32mfy3vyxedt.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"2je6ns4o4yc32mfy3vyxedt","title":"2023-05-10","desc":"","updated":1683702151610,"created":1683702143520,"traitIds":["open-notebook-lschwegler"],"custom":{},"fname":"open-notebook.dbgi.lschwegler.2023.05.10","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbb47f54ca2fe05c339d532338ea8fa8","links":[],"anchors":{"this-is-lenditas-dbgi-daily-open-notebook":{"type":"header","text":"This is Lendita's DBGI daily open-notebook.","value":"this-is-lenditas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":23,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":25,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":27,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":32,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":34,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":35,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":36,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":39,"column":0,"depth":2}},"children":[],"parent":"giitkp9yhfqe7cosjgh4t6h","data":{}},"body":"
Unfortunately, that was not it. The whole process is delayed for various reasons. I still have to take some pictures manually and add them to iNaturalist because they have disappeared. Then some samples are still missing. Edouard has little time and will probably not be able to do the rest of the extraction until the end of the week and when Pierre-Marie will be able to do the injection is also not quite clear.\nNow for my bachelor thesis I will just write what I have done. Since it has to be finished in exactly 3 weeks. So I should have all the data this week to write and do something about it.\nIt's all very strict for me right now, so I'm trying not to overdo it and just work with what I have. That means: I describe the project and my part in it for the Bachelor's thesis. And of course what exactly I did, etc.
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/2jubmyun9qey56cyfo8q9zy.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/2jubmyun9qey56cyfo8q9zy.json
new file mode 100644
index 000000000000..76d63300ea4c
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/2jubmyun9qey56cyfo8q9zy.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.lschwegler.2023","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345584,"created":1695629345584,"id":"2jubmyun9qey56cyfo8q9zy","desc":"","links":[],"anchors":{},"children":["5bn9phwme3mwpqs2gxa0ydc","fvmwxnhp9vq9cdbnjkn6slr","k1podevswt9ww6fu8pm77tt","giitkp9yhfqe7cosjgh4t6h"],"parent":"odbw4qsh2ccq5cdtbopl9i0","data":{},"title":"2023"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/2n9ssq0hbel5s1n7o4aiqhl.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/2n9ssq0hbel5s1n7o4aiqhl.json
new file mode 100644
index 000000000000..b4ab7c8e9f1b
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/2n9ssq0hbel5s1n7o4aiqhl.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.mwannier.2022.11","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345588,"created":1695629345588,"id":"2n9ssq0hbel5s1n7o4aiqhl","desc":"","links":[],"anchors":{},"children":["gido053sxqcjskt8fsjhx7h","s8gqac3x75f7wklnzu3phot","trobxy1y9ercdkmgxm3h8pv","1lx4xxsdtsdw9dmhzsb7m5q","c6a43vkelhov72igdp303gu","wp6ovmq51f3ymg09xxtbcq3"],"parent":"ebf7zmqp4iniyzz0xs0grhw","data":{},"title":"11"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/2rdj76oftew3rh61as7f24u.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/2rdj76oftew3rh61as7f24u.json
new file mode 100644
index 000000000000..9f5b491cc473
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/2rdj76oftew3rh61as7f24u.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"2rdj76oftew3rh61as7f24u","title":"2023-05-04","desc":"","updated":1683205441598,"created":1683199321606,"traitIds":["open-notebook-lschwegler"],"custom":{},"fname":"open-notebook.dbgi.lschwegler.2023.05.04","type":"note","vault":{"fsPath":"vault"},"contentHash":"63b1940594ec937296f287dbc0d870f1","links":[],"anchors":{"this-is-lenditas-dbgi-daily-open-notebook":{"type":"header","text":"This is Lendita's DBGI daily open-notebook.","value":"this-is-lenditas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":23,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":25,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":27,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":30,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":32,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":33,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":34,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":37,"column":0,"depth":2}},"children":[],"parent":"giitkp9yhfqe7cosjgh4t6h","data":{}},"body":"
Finally I could upload the rest of the pictures to iNaturalist. Of course it's still manual and it takes some time but I'm happy when it's going on. Now I have to find out which of the collected plants are missing the photos...
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/2s1vp8k62157g34s0gbtwqg.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/2s1vp8k62157g34s0gbtwqg.json
new file mode 100644
index 000000000000..9da0c4331498
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/2s1vp8k62157g34s0gbtwqg.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"2s1vp8k62157g34s0gbtwqg","title":"2023-06-21","desc":"","updated":1687361703093,"created":1687361417574,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.06.21","type":"note","vault":{"fsPath":"vault"},"contentHash":"e02f517e4fe98387336d9ec0c38a8dc8","links":[],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":20,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":21,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":23,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":25,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":27,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":32,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":34,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":36,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":37,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":38,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":41,"column":0,"depth":2}},"children":[],"parent":"4vdnom6lqejdj7tre2evd8z","data":{}},"body":"
import sur Cytoscape du reseau sorti de mol_net_enhancer\n-> table data reformatted\n-> cdhrc_dbgi_alc_pos_spectral_match_results_repond.tsv\n-> metre la clé sur feature / share + list of string sur inchikey & smiles
\n
Notes
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/2up7pfo1hakgwih6jyre27k.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/2up7pfo1hakgwih6jyre27k.json
new file mode 100644
index 000000000000..b6d73000c512
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/2up7pfo1hakgwih6jyre27k.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"2up7pfo1hakgwih6jyre27k","title":"2022-04-11","desc":"","updated":1655027552119,"created":1649685053071,"traitIds":["journalNote"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2022.04.11","type":"note","vault":{"fsPath":"vault"},"contentHash":"f95aebd180fc15208ee0a119d1ae363f","links":[],"anchors":{"starting-the-day":{"type":"header","text":"Starting the day","value":"starting-the-day","line":12,"column":0,"depth":2},"todays-todo":{"type":"header","text":"Today's Todo","value":"todays-todo","line":16,"column":0,"depth":3},"today-notes--ideas":{"type":"header","text":"Today Notes & ideas","value":"today-notes--ideas","line":22,"column":0,"depth":3},"ending-the-day":{"type":"header","text":"Ending the day","value":"ending-the-day","line":27,"column":0,"depth":2},"future-todo":{"type":"header","text":"Future Todo","value":"future-todo","line":29,"column":0,"depth":3}},"children":[],"parent":"gayd6f5rjdzpelcl7due270","data":{}},"body":"
The flight is done and the GPS points have been collected and transformed like followed : The raw format was in MN03(CH1903). They have been changed in MN95(CH1903+) format, that is the actual for switzerland. After that, the data have been transformed to have less digits as possible (Xc = X - 2578300, Yc = Y - 1182200, Zc = Z - 632). For now I don't have the drone photos yet. I'll ask them tomorrow morning.
\n
Ending the day
\n
Future Todo
\n
\n
Obtain the drone photos
\n
Make the map of the botanical garden
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/2y3etse4wjguvncmojsq64a.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/2y3etse4wjguvncmojsq64a.json
new file mode 100644
index 000000000000..681ae3d95e24
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/2y3etse4wjguvncmojsq64a.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"2y3etse4wjguvncmojsq64a","title":"2023-05-04","desc":"","updated":1683212035735,"created":1683181845751,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.05.04","type":"note","vault":{"fsPath":"vault"},"contentHash":"7d881fa34211fb617672de1c03815049","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":25,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":42,"column":0,"depth":2}},"children":[],"parent":"kpf9zs71io037d9pc13w2ky","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/2ym8qtotm2by9jp6mck5swf.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/2ym8qtotm2by9jp6mck5swf.json
new file mode 100644
index 000000000000..753c717ad512
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/2ym8qtotm2by9jp6mck5swf.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"2ym8qtotm2by9jp6mck5swf","title":"2022-05-02","desc":"","updated":1655027552103,"created":1651480314129,"traitIds":["journalNote"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2022.05.02","type":"note","vault":{"fsPath":"vault"},"contentHash":"71423d89850d02ab838c58123219b2b3","links":[],"anchors":{"starting-the-day":{"type":"header","text":"Starting the day","value":"starting-the-day","line":12,"column":0,"depth":2},"todays-todo":{"type":"header","text":"Today's Todo","value":"todays-todo","line":16,"column":0,"depth":3},"today-notes--ideas":{"type":"header","text":"Today Notes & ideas","value":"today-notes--ideas","line":22,"column":0,"depth":3},"ending-the-day":{"type":"header","text":"Ending the day","value":"ending-the-day","line":27,"column":0,"depth":2},"future-todo":{"type":"header","text":"Future Todo","value":"future-todo","line":29,"column":0,"depth":3}},"children":[],"parent":"3ck5i1foueo5cjl270x5w3s","data":{}},"body":"
last wednesday (27th april) we have tested some extraction technics. Firstly, we have used lyophilized plants and we have tried to make powder with it on 5ml eppendorf, then on 50ml falcon tubes with big glass beads, little glass beads and little metal beads. It didn't work very well. The solution we found is to use 2ml rounded bottom eppendorf tubes with 3 little metal beads in it and then pass it 3 minutes in the Retsch at a 30khz frequency. The result is the best with this technic and make a really fine powder that can be considered as homogeneised. Firstly we tried to pmake powder with the full plant sample, but it didn't work well. So, with the 2ml rounded eppendorf tubes, it's better to weight before making powder. So we weighted 50 micrograms of plants regarding we put all the parts of the leafs in it. Then we make powder with Retsch and 3 beads in the 2ml eppendorf tubes. Then we add 1.7 microlitters of 80% methanol, 20% water and 0.1% formic acid to extract the components. We then put in the Retsch again to homogeneise (don't know how much time). Then we put (I don't know how much time at which frequency) in the centrifugation. Lastly, we prelevate 1 microlitters of the supernatant and put it in a little glass tube (I forgot the name).
\n
Ending the day
\n
Future Todo
\n
\n\n\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/33r62tekbrtckkfadan4kwj.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/33r62tekbrtckkfadan4kwj.json
new file mode 100644
index 000000000000..f153f5e1b284
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/33r62tekbrtckkfadan4kwj.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"33r62tekbrtckkfadan4kwj","title":"Program","desc":"","updated":1677221277207,"created":1676042332330,"custom":{},"fname":"meetings.2023.02.22.program","type":"note","vault":{"fsPath":"vault"},"contentHash":"d49976ecf8da03f71ee991db5b930b6e","links":[{"type":"wiki","from":{"fname":"meetings.2023.02.22.program","id":"33r62tekbrtckkfadan4kwj","vaultName":"vault"},"value":"meetings.2023.02.22.program.notes.dbgi-wetlab-pilot","position":{"start":{"line":35,"column":1,"offset":1055},"end":{"line":35,"column":56,"offset":1110},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"meetings.2023.02.22.program.notes.dbgi-wetlab-pilot"}},{"type":"wiki","from":{"fname":"meetings.2023.02.22.program","id":"33r62tekbrtckkfadan4kwj","vaultName":"vault"},"value":"meetings.2023.02.22.program.notes.data-management-pilot","position":{"start":{"line":41,"column":1,"offset":1307},"end":{"line":41,"column":60,"offset":1366},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"meetings.2023.02.22.program.notes.data-management-pilot"}},{"type":"ref","from":{"fname":"meetings.2023.02.22.program","id":"33r62tekbrtckkfadan4kwj","vaultName":"vault"},"value":"meetings.2023.02.22.program.notes.open-science","position":{"start":{"line":71,"column":1,"offset":2228},"end":{"line":71,"column":52,"offset":2279},"indent":[]},"xvault":false,"to":{"fname":"meetings.2023.02.22.program.notes.open-science"}},{"type":"ref","from":{"fname":"meetings.2023.02.22.program","id":"33r62tekbrtckkfadan4kwj","vaultName":"vault"},"value":"meetings.2023.02.22.program.notes.botanical-garden","position":{"start":{"line":75,"column":1,"offset":2352},"end":{"line":75,"column":56,"offset":2407},"indent":[]},"xvault":false,"to":{"fname":"meetings.2023.02.22.program.notes.botanical-garden"}},{"type":"ref","from":{"fname":"meetings.2023.02.22.program","id":"33r62tekbrtckkfadan4kwj","vaultName":"vault"},"value":"meetings.2023.02.22.program.notes.wp2","position":{"start":{"line":79,"column":1,"offset":2462},"end":{"line":79,"column":43,"offset":2504},"indent":[]},"xvault":false,"to":{"fname":"meetings.2023.02.22.program.notes.wp2"}},{"type":"ref","from":{"fname":"meetings.2023.02.22.program","id":"33r62tekbrtckkfadan4kwj","vaultName":"vault"},"value":"meetings.2023.02.22.program.notes.wp3","position":{"start":{"line":83,"column":1,"offset":2571},"end":{"line":83,"column":43,"offset":2613},"indent":[]},"xvault":false,"to":{"fname":"meetings.2023.02.22.program.notes.wp3"}},{"type":"ref","from":{"fname":"meetings.2023.02.22.program","id":"33r62tekbrtckkfadan4kwj","vaultName":"vault"},"value":"meetings.2023.02.22.program.notes.wp4","position":{"start":{"line":87,"column":1,"offset":2654},"end":{"line":87,"column":43,"offset":2696},"indent":[]},"xvault":false,"to":{"fname":"meetings.2023.02.22.program.notes.wp4"}},{"type":"ref","from":{"fname":"meetings.2023.02.22.program","id":"33r62tekbrtckkfadan4kwj","vaultName":"vault"},"value":"meetings.2023.02.22.program.notes.wp5","position":{"start":{"line":92,"column":1,"offset":2790},"end":{"line":92,"column":43,"offset":2832},"indent":[]},"xvault":false,"to":{"fname":"meetings.2023.02.22.program.notes.wp5"}},{"type":"ref","from":{"fname":"meetings.2023.02.22.program","id":"33r62tekbrtckkfadan4kwj","vaultName":"vault"},"value":"meetings.2023.02.22.program.notes.varia","position":{"start":{"line":96,"column":1,"offset":2852},"end":{"line":96,"column":45,"offset":2896},"indent":[]},"xvault":false,"to":{"fname":"meetings.2023.02.22.program.notes.varia"}},{"from":{"fname":"meetings.2023.02.22.wrap-up","id":"bjbdnlx9t9rmqt5uw39flf2","vaultName":"vault"},"type":"backlink","position":{"start":{"line":35,"column":1,"offset":546},"end":{"line":35,"column":32,"offset":577},"indent":[]},"value":"meetings.2023.02.22.program"},{"from":{"fname":"meetings.2023.02.22.wrap-up","id":"bjbdnlx9t9rmqt5uw39flf2","vaultName":"vault"},"type":"backlink","position":{"start":{"line":37,"column":76,"offset":654},"end":{"line":37,"column":107,"offset":685},"indent":[]},"value":"meetings.2023.02.22.program"},{"from":{"fname":"open-notebook.dbgi.pmallard.2023.02.12","id":"g152oth6vwzpqf5pohwcvg9","vaultName":"vault"},"type":"backlink","position":{"start":{"line":16,"column":18,"offset":241},"end":{"line":16,"column":49,"offset":272},"indent":[]},"value":"meetings.2023.02.22.program"}],"anchors":{"morning":{"type":"header","text":"Morning","value":"morning","line":15,"column":0,"depth":1},"first-part-9h30":{"type":"header","text":"First part 9h30","value":"first-part-9h30","line":17,"column":0,"depth":2},"second-part-11h15":{"type":"header","text":"Second part 11h15","value":"second-part-11h15","line":51,"column":0,"depth":2},"lunch-break-1200":{"type":"header","text":"Lunch break 12:00","value":"lunch-break-1200","line":69,"column":0,"depth":1},"afternoon-1330":{"type":"header","text":"Afternoon 13:30","value":"afternoon-1330","line":73,"column":0,"depth":1},"open-science--communication-1330":{"type":"header","text":"Open Science & Communication 13:30","value":"open-science--communication-1330","line":75,"column":0,"depth":2},"botanical-gardens-collection-of-specimens--legal-aspects-1400":{"type":"header","text":"Botanical Gardens, collection of specimens & legal aspects 14:00","value":"botanical-gardens-collection-of-specimens--legal-aspects-1400","line":79,"column":0,"depth":2},"wp2-sample-tracking-system-establishment-1415":{"type":"header","text":"WP2 Sample tracking system establishment 14:15","value":"wp2-sample-tracking-system-establishment-1415","line":83,"column":0,"depth":2},"wp3-knowledge-representation-and-graph-establishment-1445":{"type":"header","text":"WP3 Knowledge representation and graph establishment 14:45","value":"wp3-knowledge-representation-and-graph-establishment-1445","line":87,"column":0,"depth":2},"wp4-human-data-interaction-1515":{"type":"header","text":"WP4 Human-Data Interaction 15:15","value":"wp4-human-data-interaction-1515","line":91,"column":0,"depth":2},"break":{"type":"header","text":"Break","value":"break","line":95,"column":0,"depth":2},"wp5-community-engagement-public-outreach--biodiversity-conservation-1600":{"type":"header","text":"WP5 Community Engagement, Public Outreach & Biodiversity Conservation 16:00","value":"wp5-community-engagement-public-outreach--biodiversity-conservation-1600","line":96,"column":0,"depth":2},"varia-1615":{"type":"header","text":"Varia 16:15","value":"varia-1615","line":100,"column":0,"depth":2}},"children":["9676i362aou4xnjhjczonjx"],"parent":"29snrplphmlppuhnz6bclo6","data":{}},"body":"
Botanical Gardens, collection of specimens & legal aspects
\n
Botanical Gardens
\n
\n
Anne-Laure, Donat, Nadir, Blaise, Gregor
\n
\n
What do we have ?
\n
For now UniFr / UniNe
\n
What do we want ?
\n
Should we contact other Botanical gardens in CH ? International ?
\n
Maybe yes at least for questions regarding Nagoya and CBD. (e.g Geneva BG, Vienna Botanical Gardens, IPEN exchange group) BGCI (BG conservation iNternational)\nHBH (Hortus Botanicus Helveticus )
\n
Meeting in Neuchâtel in August 30-31 Manu will present DBGI
\n
Private Partner Orchids Green House (EMI/DBGI ?)\nLegal & ethics ?\nNagoya status.
\n
We want to track provenance and licences regarding reuse of data.
\n
Litterature information collection
\n
This part should eventually be linked with the anticipated LOTUS project.\nHowever discussing it we could think about the best way to integrate Taxonomic treatments in the DBGI-KG from the very beginning of the project and not afterwards
\n
From Donat's part
\n
\n
Thanks for the invitation. I had a look at the program and wonder whether you want to have a few slides about the linking of metabolomes to specimens to literature, essentially what you asked for in the BiCIKL TNA proposal.\nOn our side we are interested to process Phytochemistry so you could then create the links and we could work with Patrick Ruch to see how we could annotate chemical substances in SIBiLS once we have the Phytochemistry articles in SIBiLS
- living specimens (look trough the window !)\n- dried tissues collections (bring Tubes)\n- extracts (Tubes)\n- fridges\n
\n
Digital objects
\n
- Species list. We had a quick talk with https://botalista.community/ people.\n- iNat. The DBGI iNat project https://www.inaturalist.org/projects/digital-botanical-gardens-initiative\n
\n
We cant use the iNat API (because we have non-research grade observation - cultivated specimens)
\n
See examples of DBGI iNat entries curated by others :
Think of a way to capture these community curated entries and forward then to the implicated botanical gardens.
\n
- Directus (http://directus.dbgi.org/) Have a quick tour.\n- MassIVE (several set uploaded e.g. https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=bd2a519b678e4f92aeca6434166ea548, https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=589f0793f15d4b87aebd699900ad468e)\nFor long term consider other MasSpec repositories. (Metabolights https://www.ebi.ac.uk/metabolights/) Others ?\n\n\n- Physical samples tracking: none at the moment.\n
\n
What do we want ?
\n
Physical objects
\n
- living specimens (look trough the window) - Could this improve ? How ?\n- dried tissues collections (Falcon Tubes) - Could this improve ? How ?\n- extracts (Tubes) - Could this improve ? How ?\n- fridges () - Could this improve ? How ?\n
\n
Digital objects
\n
- Species list\n- iNat\n- Directus\n- MassIVE. Are they new developments /recommendations on this side ? GNPS2 ?\n- Physical samples tracking\n
If we take the directus example, it is hosted on a computer of the COMMONS Lab at UniFr and can only be accessed through the UniFr VPN.\nShould we buy / rent another machine to ease external access ?\nIf so where ? Which specifications ?
\n
OpenBIS
\n
A workshop is to be planned in the next month. In the first 15 days of March. Doodle to be send by Henry and Caterina\nPhysical / remote\nHalf a day to get started.\nObjectives :
https://github.com/SWAT4HCLS/Biohackathon-SWAT4HCLS-2023/issues/4\nThis hack project is following up efforts of other to repurpose the Scholia platform for other SPARQL endpoints, like custom Wikibase installations or Wikidata subsets. In this project we will explore how we can make the Scholia code base configurable for the aspects to show, and which panels to show.\nIf the project is successful, we have a custom Scholia instance around any of the existing public SPARQL endpoints (e.g. ChEMBL, UniProt/NextProt, etc).
\n
\n
Daniel runs his own instance Wikibase instance.
\n
Downside : additional efforts to set up \nWhy not do it on WD directly ?
\n
WD doesn't want specimens informations.\nWe have data at higher granularity.\nSeveral ways to test this https://www.wikibase.cloud/\nNeed a Wikimedia account
\n
Will set up a small meeting with Daniel.
\n
(PMA) I just signed up for a wikibase.cloud account. They are apparently in closed beta for now https://www.wikibase.cloud/
An intuitive, easy to use, data access platform allowing domain experts to explore the available data.
\n
See Scholia proposal at the SWAT4HCLS hackaton by Egon
\n
Hacking Scholia for custom SPARQL endpoints
\n
https://github.com/SWAT4HCLS/Biohackathon-SWAT4HCLS-2023/issues/4\nThis hack project is following up efforts of other to repurpose the Scholia platform for other SPARQL endpoints, like custom Wikibase installations or Wikidata subsets. In this project we will explore how we can make the Scholia code base configurable for the aspects to show, and which panels to show.\nIf the project is successful, we have a custom Scholia instance around any of the existing public SPARQL endpoints (e.g. ChEMBL, UniProt/NextProt, etc).
\n
\n
Break
\n
WP5 Community Engagement, Public Outreach & Biodiversity Conservation [16:00]
We have set up 2 upcoming meetings (more targeted than today's)\nAnyone is welcome to join them. And also envisioned starting a small taskgroup.
\n
\n
one small working group on legal and ethics aspects of sample collection (Anne Laure in JBN) Daniel is interested in ethics aspects and will possibly participate.
\n
one workshop on opneBIS (Henry, Caterina)
\n
one wikibase workshop (Daniel) In CH end of March 29-30 possibly few days earlier maybe in person.
\n
\n
Last notes by Daniel. He is involved in Soil for Europe (intersect with DBGI)\nPhenOps phenotypic observation, citizen science observation Botanical Gardens and citizen gardens\nThey gather temp data.
\n
Found back previous email of Daniel on these projects
\n
\n
I am involved with the EU Project \"Soils for Europe\" https://cordis.europa.eu/project/id/101091115 that may be of interest to you,\nand I talked to two projects here in Germany that I think would be good to connect with in some way, e.g. in terms of their model beddings and citizen involvement:\n\"Pflanze KlimaSchutz\" https://www.pflanzeklimakultur.de/index.php/de/\n\"PhenObs\" https://www.idiv.de/en/phenobs.html\nBoth involve collaborations between botanical gardens, with the first focusing on citizen science and public engagement in four German cities (Jena, Halle, Leipzig, Berlin), while the latter is more international (including Davos, whose Fabian Reppel will give a talk here in about an hour - [1]).
\n
I also would like us to think about\nhttps://commons.wikimedia.org/wiki/Commons:Wiki_Loves_Plants\nand similar initiatives involving iNaturalist and Wikimedia.\nFor instance, I would like to explore infrared imaging to highlight thermogenic plants.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/36ubfejp228dryxpu08xz9f.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/36ubfejp228dryxpu08xz9f.json
new file mode 100644
index 000000000000..5619cb22dfd1
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/36ubfejp228dryxpu08xz9f.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"36ubfejp228dryxpu08xz9f","title":"2023-02-09","desc":"","updated":1675952964297,"created":1675927580099,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.02.09","type":"note","vault":{"fsPath":"vault"},"contentHash":"d467c5240a8ea8edb61162a708ec26fb","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":24,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":26,"column":0,"depth":2},"python-dashboard":{"type":"header","text":"Python dashboard","value":"python-dashboard","line":28,"column":0,"depth":3},"molplotly":{"type":"header","text":"molplotly","value":"molplotly","line":35,"column":0,"depth":3},"features-needed-for-the-vizualisation-project":{"type":"header","text":"Features needed for the vizualisation project","value":"features-needed-for-the-vizualisation-project","line":41,"column":0,"depth":3},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":51,"column":0,"depth":2}},"children":[],"parent":"3q0f349eurhhy0r6e1to0d2","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/3ck5i1foueo5cjl270x5w3s.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/3ck5i1foueo5cjl270x5w3s.json
new file mode 100644
index 000000000000..f51ed19dc3a9
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/3ck5i1foueo5cjl270x5w3s.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.ebruelhart.2022.05","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345574,"created":1695629345574,"id":"3ck5i1foueo5cjl270x5w3s","desc":"","links":[],"anchors":{},"children":["2ym8qtotm2by9jp6mck5swf","qehhmjbk7xbf3qb9pw5jiru"],"parent":"vechu9nek0ai9pac4taotye","data":{},"title":"05"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/3gtlbi2k7w3yr100owwky6q.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/3gtlbi2k7w3yr100owwky6q.json
new file mode 100644
index 000000000000..c09a5f179d6f
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/3gtlbi2k7w3yr100owwky6q.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.pmallard.2023.09","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345618,"created":1695629345618,"id":"3gtlbi2k7w3yr100owwky6q","desc":"","links":[],"anchors":{},"children":["jj89v4nh02m729y6re4si5y","a5wq6ip2uxy0sqtues0d39q","urq110fh5eyr0umzizuzcnu","uchpm4tt1enj34vr209qauc","087v670ubwmxoo7cikdgvrz","rih8wws5mmrvm6g8ydquoak","se52zr89ov9hlvdol71v5w6"],"parent":"kdf7w680pcf9ofqywy9qgyl","data":{},"title":"09"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/3h4j37hs4c67hha8mhajsrm.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/3h4j37hs4c67hha8mhajsrm.json
new file mode 100644
index 000000000000..a6cb256e38a9
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/3h4j37hs4c67hha8mhajsrm.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"3h4j37hs4c67hha8mhajsrm","title":"notes","desc":"","updated":1688891509302,"created":1688887093988,"custom":{},"fname":"BiCICKL-project.nanopublications.workshops.2023.07.10.notes","type":"note","vault":{"fsPath":"vault"},"contentHash":"c50e0430c29188d52c42ff69015c66d3","links":[],"anchors":{},"children":[],"parent":"y4st25fb5m6zr3lymwti67f","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/3j8mxgecduk9e74cjqoxem5.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/3j8mxgecduk9e74cjqoxem5.json
new file mode 100644
index 000000000000..9e2e9ca0fea1
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/3j8mxgecduk9e74cjqoxem5.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"3j8mxgecduk9e74cjqoxem5","title":"2023-07-09","desc":"","updated":1688884847438,"created":1688884817657,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.07.09","type":"note","vault":{"fsPath":"vault"},"contentHash":"2c9dc62dbf30ec57adbfae6f89da764a","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":28,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":30,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":32,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":34,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":36,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":37,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":38,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":41,"column":0,"depth":2}},"children":[],"parent":"vvcscq2gtvhdsmtmbqfqjqb","data":{}},"body":"
Dumping nanopubs ressources and dicsussions for the next workshop
\n
Paused
\n
Done
\n
Notes
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/3p92gjvv8krrc6kjlk7rz6r.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/3p92gjvv8krrc6kjlk7rz6r.json
new file mode 100644
index 000000000000..49d792f383c5
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/3p92gjvv8krrc6kjlk7rz6r.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"3p92gjvv8krrc6kjlk7rz6r","title":"Alecabec","desc":"","updated":1680696541646,"created":1679994238929,"custom":{},"fname":"templates.open-notebook.dbgi.alecabec","type":"note","vault":{"fsPath":"vault"},"contentHash":"9a35a5f5239c1f5f8649a72fea6905a2","links":[],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":8,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":12,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":14,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":17,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":18,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":20,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":22,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":24,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":26,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":28,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":30,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":31,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":32,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":35,"column":0,"depth":2}},"children":[],"parent":"b51e1k7qbe6jj1quhxnag04","data":{}},"body":"
Alecabec
\n
This is Audrey's DBGI daily open-notebook.
\n
Today is {{ CURRENT_YEAR }}.{{ CURRENT_MONTH }}.{{ CURRENT_DAY }}
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/3q0f349eurhhy0r6e1to0d2.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/3q0f349eurhhy0r6e1to0d2.json
new file mode 100644
index 000000000000..3ebabfd948f3
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/3q0f349eurhhy0r6e1to0d2.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.mwannier.2023.02","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345592,"created":1695629345592,"id":"3q0f349eurhhy0r6e1to0d2","desc":"","links":[],"anchors":{},"children":["y7jopb2ea9jtgiljrorp7pl","8lh10mwrs3hq3npcubl3ndj","36ubfejp228dryxpu08xz9f","o1mduta2pzccrzqm3osarb2","euvuax5sxsqmbujoumykvfn","pk5tod8gh3jg5ow9k1mba1d","n6q9mhbpvesbo1oiewipczt","7fl4cu3b0ihzfwpnyghmes8","l1k3nb5om402b83cp1fheud","4sm9vs1yj5mbnnra9ty3nul"],"parent":"hjgld8jupnd9k7kzqe0ubra","data":{},"title":"02"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/3r5uxl0tc0s1tp7tvlixz24.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/3r5uxl0tc0s1tp7tvlixz24.json
new file mode 100644
index 000000000000..7c973a3e2bcb
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/3r5uxl0tc0s1tp7tvlixz24.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"3r5uxl0tc0s1tp7tvlixz24","title":"Labnote Template","desc":"","updated":1655027552116,"created":1645441738236,"custom":{},"fname":"templates.labnote-template","type":"note","vault":{"fsPath":"vault"},"contentHash":"b3034a32337d32fd9761b22560966e6d","links":[],"anchors":{"starting-the-day":{"type":"header","text":"Starting the day","value":"starting-the-day","line":9,"column":0,"depth":2},"todays-todo":{"type":"header","text":"Today's Todo","value":"todays-todo","line":13,"column":0,"depth":3},"today-notes--ideas":{"type":"header","text":"Today Notes & ideas","value":"today-notes--ideas","line":19,"column":0,"depth":3},"ending-the-day":{"type":"header","text":"Ending the day","value":"ending-the-day","line":24,"column":0,"depth":2},"future-todo":{"type":"header","text":"Future Todo","value":"future-todo","line":26,"column":0,"depth":3}},"children":[],"parent":"kdqbwl7mqgcpks5yv8yi9kf","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/3wig5i4paj4ke7klvchx6qa.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/3wig5i4paj4ke7klvchx6qa.json
new file mode 100644
index 000000000000..2a349d03b2ce
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/3wig5i4paj4ke7klvchx6qa.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"3wig5i4paj4ke7klvchx6qa","title":"2023-06-22","desc":"","updated":1687417115666,"created":1687417063453,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.06.22","type":"note","vault":{"fsPath":"vault"},"contentHash":"9097b41e495a6af921ef9db8ec092fd8","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2023.06.22","id":"3wig5i4paj4ke7klvchx6qa","vaultName":"vault"},"value":"tags.gbif","alias":"#gbif","position":{"start":{"line":24,"column":1,"offset":347},"end":{"line":24,"column":6,"offset":352},"indent":[]},"xvault":false,"to":{"fname":"tags.gbif"}}],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":24,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":26,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":28,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":47,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":49,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":50,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":51,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":54,"column":0,"depth":2}},"children":[],"parent":"8duum2njm3z1sm4nnvgy93s","data":{}},"body":"
I found that using the dataset seach and a filter on sampling events.\nHere is another entering random string in the eventID filter on occurrence search\nhttps://www.gbif.org/occurrence/search?advanced=1&event_id=AB%200423%20B1 (and confirmed that the occurrences didn't come from multiple datasets)
\n
Did that help?
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/3yd85jqtrhbde34gqn7efi9.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/3yd85jqtrhbde34gqn7efi9.json
new file mode 100644
index 000000000000..038bf3f81abd
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/3yd85jqtrhbde34gqn7efi9.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"3yd85jqtrhbde34gqn7efi9","title":"2023-05-03","desc":"","updated":1683104961904,"created":1683096770516,"traitIds":["open-notebook-lschwegler"],"custom":{},"fname":"open-notebook.dbgi.lschwegler.2023.05.03","type":"note","vault":{"fsPath":"vault"},"contentHash":"88263f6d0d0e75a71b2b8f471e571cfb","links":[],"anchors":{"this-is-lenditas-dbgi-daily-open-notebook":{"type":"header","text":"This is Lendita's DBGI daily open-notebook.","value":"this-is-lenditas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":23,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":25,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":28,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":36,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":38,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":39,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":40,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":43,"column":0,"depth":2}},"children":[],"parent":"giitkp9yhfqe7cosjgh4t6h","data":{}},"body":"
Unfortunately, even after the second run in the freeze dryer, one sample was not dry. I cannot explain why. There were also samples with plants that were much thicker and larger. Today I took a new sample in the greenhouse and froze it. Afterwards I can put it straight into the freeze dryer.
\n
Further problems:\n28 of the collected samples from 5/6 April ei those are missing the pictures. They got lost during synchronisation. According to Edouard, it is no longer possible to restore them. Now I have to take the photos again (28 x 5 = 140 photos). The problem is that first all the other photos have to be uploaded to iNaturalist so that we can find out which 28 plants are missing. Since Edouard is working on automating the whole thing on iNaturalist, it will take a while. Of course, all this is holding up my progress and also the one sample that I unfortunately had to take again.\nI still hope that all the pictures will be at iNaturalist by the beginning of next week at the latest, that Edouard will have done all the extractions and that Pierre-Marie will have done the injections by the end of next week at the latest.\nI am getting very nervous. I want to have the evaluations so that I can work with them for my paper and presentation on 31 May and finish everything.
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/403.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/403.json
new file mode 100644
index 000000000000..07cb3ec7f73f
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/403.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"vault":{"fsPath":"vault"},"fname":"403","id":"403","title":"This page has not yet sprouted","schemaStub":false,"type":"note","updated":1695629353179,"created":1695629353179,"desc":"","links":[],"anchors":{},"children":[],"parent":null,"data":{}},"body":"
This page has not yet sprouted
\n
Dendron (the tool used to generate this site) lets authors selective publish content. You will see this page whenever you click on a link to an unpublished page
\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/4coqs390hba8xusek98tmsb.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/4coqs390hba8xusek98tmsb.json
new file mode 100644
index 000000000000..af1184a59e72
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/4coqs390hba8xusek98tmsb.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"4coqs390hba8xusek98tmsb","title":"2022-12-17","desc":"","updated":1671709979551,"created":1671276187885,"traitIds":["open-notebook-eb"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2022.12.17","type":"note","vault":{"fsPath":"vault"},"contentHash":"e94363042bc889fb55d2de6d1def2839","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":16,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":27,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":29,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":31,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":33,"column":0,"depth":1}},"children":[],"parent":"jb94w8oc7a9tv04izb0g544","data":{}},"body":"
2022-12-17
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2022.12.17
\n
To do
\n
done
\n
Today I made the labels for different samples in the project :
\n
\n
Labels of all the batch made on the JBUF system for the analyze inserts (dbgi_000379_01-dbgi_000567_01 and dbgi_000870_01-dbgi_001058_01)
\n
Labels to relabel the extracts made during my bachelor work with correct code (dbgi_000001_01-dbgi_000135_01)
\n
Labels for the 20 resampled JBUF system for the analyze inserts (dbgi_000399_02, dbgi_000424_02, dbgi_000499_02, dbgi_000425_02, dbgi_000408_02, dbgi_000478_02, dbgi_000531_02, dbgi_000472_02, dbgi_000498_02, dbgi_000888_02, dbgi_000403_02, dbgi_000559_02, dbgi_000387_02, dbgi_000467_02, dbgi_000876_02, dbgi_000541_02, dbgi_000477_02, dbgi_000407_02, dbgi_000497_02, dbgi_000521_02)
\n
Labels for the 10 extracts we will remake to test the conservation of the extracts of the bachelor work batch (dbgi_000006_01, dbgi_000010_01, dbgi_000015_01, dbgi_000019_01, dbgi_000037_01, dbgi_000110_01, dbgi_000114_01, dbgi_000119_01, dbgi_000128_01, dbgi_000135_01). Selection made with https://www.tirage-au-sort.net/nombre-aleatoire
\n
Labels for the 10 extracts we will remake to test the conservation of the dryed plants of the bachelor batch (dbgi_000007_02, dbgi_000030_02, dbgi_000036_02, dbgi_000039_02, dbgi_000091_02, dbgi_000092_02, dbgi_000105_02, dbgi_000107_02, dbgi_000129_02, dbgi_000134_02) twice, one for the storage vials and one for the analyze vials. Selection made with https://www.tirage-au-sort.net/nombre-aleatoire
\n
\n
!!! selection of extracts 2 have changed. Please refer to resample_batch_1_10_silica_10_nitro.xlsx for instance. A repo with all csv will be created soon.
\n
Perspectives
\n
notes
\n
code
\n
links
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/4exd51dppbtw62p1oekjcry.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/4exd51dppbtw62p1oekjcry.json
new file mode 100644
index 000000000000..caa2d79e8e3c
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/4exd51dppbtw62p1oekjcry.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"4exd51dppbtw62p1oekjcry","title":"Openbis","desc":"","updated":1687956461051,"created":1687871650038,"custom":{},"fname":"methodology.sample-tracking.openbis","type":"note","vault":{"fsPath":"vault"},"contentHash":"d31ba4779bfb3dd1153aa7360c442e6b","links":[],"anchors":{"questions":{"type":"header","text":"Questions","value":"questions","line":10,"column":0,"depth":1},"discussed":{"type":"header","text":"Discussed","value":"discussed","line":12,"column":0,"depth":2},"not-discussed--for-next-time":{"type":"header","text":"Not discussed / for next time","value":"not-discussed--for-next-time","line":54,"column":0,"depth":2},"todo":{"type":"header","text":"Todo","value":"todo","line":60,"column":0,"depth":1},"varia":{"type":"header","text":"Varia","value":"varia","line":66,"column":0,"depth":1},"todo-1":{"type":"header","text":"Todo","value":"todo-1","line":77,"column":0,"depth":1},"unifr":{"type":"header","text":"UniFr","value":"unifr","line":79,"column":0,"depth":2},"openbis-team":{"type":"header","text":"OpenBIS team","value":"openbis-team","line":92,"column":0,"depth":2},"ressources":{"type":"header","text":"Ressources","value":"ressources","line":101,"column":0,"depth":1},"openbis-admin-interface":{"type":"header","text":"OpenBis admin interface","value":"openbis-admin-interface","line":103,"column":0,"depth":2},"openbis-user-interface":{"type":"header","text":"OpenBis user interface","value":"openbis-user-interface","line":105,"column":0,"depth":2},"pyopenbis-scripts":{"type":"header","text":"pyOpenBis scripts","value":"pyopenbis-scripts","line":107,"column":0,"depth":2},"upcoming-trainings":{"type":"header","text":"Upcoming trainings","value":"upcoming-trainings","line":117,"column":0,"depth":2}},"children":[],"parent":"kw8d33ou2rr8ypjeltuxzny","data":{}},"body":"
Openbis
\n
Questions
\n
Discussed
\n
\n
we cannot use the API (both as user or admin) see issue on Rostyk \n
\n
the creation of a PAT apparently didn't solve the issue
\n
\n
\n
\n
The o.set_token() function should be used\no.set_token('pierre-marie.allard_AT_unifr.ch-XXXXXXXXXXX', save_token=True)
\n
\n
have a one2one and a one2many links examples. How to we do this ?
\n
\n
Caterina : this is not doable at the moment through the GUI. Or rather it is but manually.\nIn our case we should take advantage of the pyOpenBis.\nThis is fundamental for the DBGI project. We need to verify that handling of such linked tables is achievable in OpenBIS in a convenient manner. See Todo section for more details.
\n
\n
can we display maps from lat/lon coordinates
\n
\n
No. No geojson handling. We could by screenshoting the maps.\nOr maybe bettre hyperlinking to an external mapping (e.g. google maps) service
\n
\n
\n
see for upload of a simple csv from the UI\nTSV is deprecated. This should be done using the Excel template. Caterina will discus with the dev team if a csv import can be maintained.
\n
\n
\n
can we locate individual samples in boxes (e.g. 9*9) in racks, in shelves, in a fridge ?
\n
\n
\n
Yes. What is not doable for now is to define the place of a box of viales inside a rack.\nAn intermediate level should be implemented.
\n
\n
can we barcode a box of vials ?
\n
\n
No. To be implemented.
\n
\n
\n
Should the headers match exactly ?\nyes
\n
\n
\n
Should ALL fields be present ?
\n
\n
\n
NO if they aren't defined as mandatory in the Object type/OBSERVATION\nBut the depending on the field type they cannot be filled for ex with NA if the field type is digit.
CODE is UPPERCASE and _ instead of space, no special chracter\nlabel should match the header\nDescription: free text\nDATA TYPE: their is a list (where ?)
\n
OpenBIS team
\n
\n
produce pyOpenBis scripts and have the schema and related tables proposed by UniFr implemented in the OpenBIS instance.
\n
implementation of barcodes possibilities at the \"box of vials\" levels
\n
possibility to track the localisation of boxes of vials within a rack. Creation of an additional and intermediate level in the storage tracking system in openBis.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/4gh9ubiyqx2c29rph7lyax3.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/4gh9ubiyqx2c29rph7lyax3.json
new file mode 100644
index 000000000000..739cbe361dd4
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/4gh9ubiyqx2c29rph7lyax3.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"4gh9ubiyqx2c29rph7lyax3","title":"17","desc":"","updated":1689952153135,"created":1689950746986,"custom":{},"fname":"open-notebook.dbgi.lcappelletti.2023.07.21","type":"note","vault":{"fsPath":"vault"},"contentHash":"ecdb001017a2234c2914ae9003fb47bd","links":[],"anchors":{"this-is-luca-cappellettis-dbgi-daily-open-notebook":{"type":"header","text":"This is Luca Cappelletti's DBGI daily open-notebook.","value":"this-is-luca-cappellettis-dbgi-daily-open-notebook","line":8,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":12,"column":0,"depth":2},"global-problems-encountered":{"type":"header","text":"Global problems encountered","value":"global-problems-encountered","line":15,"column":0,"depth":2},"absence-of-documentation":{"type":"header","text":"Absence of documentation","value":"absence-of-documentation","line":17,"column":0,"depth":3},"inconsistent-formatting":{"type":"header","text":"Inconsistent formatting","value":"inconsistent-formatting","line":20,"column":0,"depth":3},"json-like-objects-being-hardcoded-in-the-code":{"type":"header","text":"JSON-like objects being hardcoded in the code","value":"json-like-objects-being-hardcoded-in-the-code","line":23,"column":0,"depth":3},"lack-of-tests":{"type":"header","text":"Lack of tests","value":"lack-of-tests","line":26,"column":0,"depth":3},"lack-of-uniformity-across-repositories":{"type":"header","text":"Lack of uniformity across repositories","value":"lack-of-uniformity-across-repositories","line":29,"column":0,"depth":3},"script-and-methods-are-mixed":{"type":"header","text":"Script and methods are mixed","value":"script-and-methods-are-mixed","line":32,"column":0,"depth":3},"list-of-requirements-identified":{"type":"header","text":"List of requirements identified","value":"list-of-requirements-identified","line":35,"column":0,"depth":3},"for-next-week":{"type":"header","text":"For next week","value":"for-next-week","line":52,"column":0,"depth":2}},"children":[],"parent":"sef56d6u8k6dnm61naamfmz","data":{}},"body":"
17
\n
This is Luca Cappelletti's DBGI daily open-notebook.
\n
Today is 2023.07.21
\n
Todo today
\n
\n
Continuing to work on the ENPKG Workflow so as to plan a very needed holystic refactoring.
\n
\n
Global problems encountered
\n
Absence of documentation
\n
The code does not have any meaningful documentation associated to the functions. The name of the variables often does not convey any meaning.
\n
Inconsistent formatting
\n
Some files use 4-spaced tabs, some use 2-spaced tabs.
\n
JSON-like objects being hardcoded in the code
\n
In several instances, JSON-like objects are hardcoded in the code. This is a problem because it makes the code less clean and more difficult to maintain.
\n
Lack of tests
\n
The entire code base lacks any test suites.
\n
Lack of uniformity across repositories
\n
It is unclear why there exists different very small repositories for each step of the workflow. It would be much more convenient to have a single repository with a folder for each step of the workflow, and system to test the comprehensive execution of it.
\n
Script and methods are mixed
\n
The code is a mix of scripts and methods. This makes it difficult to understand what is the intended use of the code. While the code base should be rather clearly a module, it is constructed as a set of scripts that are meant to be run in a specific order from bash with a set of parameters.
\n
List of requirements identified
\n
The following list of libraries used in the code has been identified, which will need to be accounted for in the refactoring. Hopefully some of them can be removed, but several would introduce a significant overhead as they are APIs to external resources. I need help to understand exactly what they are used for.
\n
\n
pandas - Used for CSV manipulation
\n
opentree - Used to query the open tree of life API
\n
sqlite3 - It is currently unclear why this is used.
memo_ms - Used for Ms2 basEd saMple vectOrization. I need to ask what that is, seems to be a package developed from within the lab.
\n
matchms - Python library for processing (tandem) mass spectrometry data and for computing spectral similarities. Seems to be wholly in Python, which seems like a bad call for something that needs to be fast.
\n
canopus - Package for GraphQL. It is unclear why this is used in the pipeline.
\n
[sirius] - What is this?
\n
networkx - Used for minimal graph analysis, such as computing connected components. Why is this done here?
\n
plotly - Used for plotting something, still have to understand what.
\n
\n
For next week
\n
\n
Delve into whether the data models suggested by Chris Mungall are a viable solution for the characterization of biological samples.
\n
Ask to Pierre-Marie for help understanding how to start using the data made available on Zenodo for testing the data organization and in chain all others to avoid breaking the pipeline during the refactoring.
\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/4k73c0km05uz5514qhf6fyq.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/4k73c0km05uz5514qhf6fyq.json
new file mode 100644
index 000000000000..dde9dd75170d
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/4k73c0km05uz5514qhf6fyq.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"4k73c0km05uz5514qhf6fyq","title":"2023-04-19","desc":"","updated":1681915787477,"created":1681915619188,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.04.19","type":"note","vault":{"fsPath":"vault"},"contentHash":"84590692d740a50cb00d0b92c29ad59c","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2023.04.19","id":"4k73c0km05uz5514qhf6fyq","vaultName":"vault"},"value":"user.**Rostyslav","alias":"@**Rostyslav","position":{"start":{"line":22,"column":26,"offset":308},"end":{"line":22,"column":38,"offset":320},"indent":[]},"xvault":false,"to":{"fname":"user.**Rostyslav"}},{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2023.04.19","id":"4k73c0km05uz5514qhf6fyq","vaultName":"vault"},"value":"user.**Rostyslav","alias":"@**Rostyslav","position":{"start":{"line":34,"column":1,"offset":827},"end":{"line":34,"column":13,"offset":839},"indent":[]},"xvault":false,"to":{"fname":"user.**Rostyslav"}}],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":24,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":26,"column":0,"depth":2},"meeting-with-rostyslav-and-maelle":{"type":"header","text":"Meeting with Rostyslav and Maelle","value":"meeting-with-rostyslav-and-maelle","line":28,"column":0,"depth":3},"summary-meeting-with-rostyslav-kuzyakiv--and-maëlle-wannier":{"type":"header","text":"Summary meeting with @**Rostyslav Kuzyakiv and @Maëlle Wannier**","value":"summary-meeting-with-rostyslav-kuzyakiv--and-maëlle-wannier","line":30,"column":0,"depth":3},"two-topical-collection-are-online-at-rio":{"type":"header","text":"Two topical collection are online at RIO","value":"two-topical-collection-are-online-at-rio","line":46,"column":0,"depth":3},"earth-metabolome-initiative-outcomes":{"type":"header","text":"Earth Metabolome Initiative outcomes","value":"earth-metabolome-initiative-outcomes","line":48,"column":0,"depth":5},"digital-botanical-gardens-initiative-outcomes":{"type":"header","text":"Digital Botanical Gardens Initiative outcomes","value":"digital-botanical-gardens-initiative-outcomes","line":51,"column":0,"depth":5},"notes":{"type":"header","text":"Notes","value":"notes","line":56,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":58,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":60,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":61,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":62,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":65,"column":0,"depth":2}},"children":[],"parent":"v0029honfl4v4m4tyoy8ul1","data":{}},"body":"
when no Description value is available the value can be directly copied from the Label field
\n
when the Data Type value is CONTROLLED VOCABULARY it can be switched to VARCHAR
\n
when the Data Type value is GEOMETRY it can be switched to TEXT
\n
when the Data Type value is ? it can be switched to TEXT
\n
\n
@**Rostyslav (Private) Kuzyakiv** will work on the pyBIS script on his side and get back to us when their is a functional version so we push observation to the openBIS instance.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/4os5xpu0v6cgd0p5mt4ie07.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/4os5xpu0v6cgd0p5mt4ie07.json
new file mode 100644
index 000000000000..9f4e23be39d8
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/4os5xpu0v6cgd0p5mt4ie07.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"4os5xpu0v6cgd0p5mt4ie07","title":"_c","desc":"","updated":1656059639672,"created":1656059639672,"isDir":false,"custom":{"isDir":false},"fname":"biblio._c","type":"note","vault":{"fsPath":"vault"},"contentHash":"484199d93bdcf47723e00154a3d3483e","links":[{"type":"wiki","from":{"fname":"biblio._c","id":"4os5xpu0v6cgd0p5mt4ie07","vaultName":"vault"},"value":"webpage","position":{"start":{"line":5,"column":14,"offset":38},"end":{"line":5,"column":25,"offset":49},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"webpage"}},{"type":"wiki","from":{"fname":"biblio._c","id":"4os5xpu0v6cgd0p5mt4ie07","vaultName":"vault"},"value":"2022-04-04","position":{"start":{"line":6,"column":15,"offset":64},"end":{"line":6,"column":29,"offset":78},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-04-04"}},{"type":"wiki","from":{"fname":"biblio._c","id":"4os5xpu0v6cgd0p5mt4ie07","vaultName":"vault"},"value":"gnss-location","position":{"start":{"line":9,"column":11,"offset":158},"end":{"line":9,"column":28,"offset":175},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"gnss-location"}},{"type":"wiki","from":{"fname":"biblio._c","id":"4os5xpu0v6cgd0p5mt4ie07","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":10,"column":3,"offset":178},"end":{"line":10,"column":10,"offset":185},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio._c","id":"4os5xpu0v6cgd0p5mt4ie07","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":10,"column":12,"offset":187},"end":{"line":10,"column":29,"offset":204},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio._c","id":"4os5xpu0v6cgd0p5mt4ie07","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":10,"column":31,"offset":206},"end":{"line":10,"column":41,"offset":216},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}}],"anchors":{"hackaday":{"type":"header","text":"Hackaday","value":"hackaday","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"abstract":{"type":"header","text":"Abstract","value":"abstract","line":19,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":24,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/4sm9vs1yj5mbnnra9ty3nul.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/4sm9vs1yj5mbnnra9ty3nul.json
new file mode 100644
index 000000000000..ad4342bbe3bc
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/4sm9vs1yj5mbnnra9ty3nul.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"4sm9vs1yj5mbnnra9ty3nul","title":"2023-02-28","desc":"","updated":1677598602082,"created":1677570331553,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.02.28","type":"note","vault":{"fsPath":"vault"},"contentHash":"72522bef9a72e1dfc80830b62b427243","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":23,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":25,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":34,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":38,"column":0,"depth":2}},"children":[],"parent":"3q0f349eurhhy0r6e1to0d2","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/4vdnom6lqejdj7tre2evd8z.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/4vdnom6lqejdj7tre2evd8z.json
new file mode 100644
index 000000000000..ffadbf7a4d76
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/4vdnom6lqejdj7tre2evd8z.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.alecabec.2023.06","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345565,"created":1695629345565,"id":"4vdnom6lqejdj7tre2evd8z","desc":"","links":[],"anchors":{},"children":["9f3q0f4mb6290b4topikcz1","at1rofti4wm05hfdlfi8vie","9jnk8rctu6gz3arc5v1lom0","uc5kxcbfvli6vk0z9x1b2mb","5ikmb6qdj2x03braqx4tjcp","aekrrxb8bzhzb2kce0virw4","2s1vp8k62157g34s0gbtwqg","ialf7d4ig1b2fapedzvbxbb"],"parent":"s31xn7xb1bk6xuusjykyfgv","data":{},"title":"06"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/4x838xaa0fzky9sy417xnnu.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/4x838xaa0fzky9sy417xnnu.json
new file mode 100644
index 000000000000..49110a88a45c
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/4x838xaa0fzky9sy417xnnu.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"4x838xaa0fzky9sy417xnnu","title":"2022-02-21","desc":"","updated":1645443020941,"created":1645442242889,"traitIds":["journalNote"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2022.02.21","type":"note","vault":{"fsPath":"vault"},"contentHash":"eecbf2138cabd2e1106fd996fd4cff67","links":[],"anchors":{"starting-the-day":{"type":"header","text":"Starting the day","value":"starting-the-day","line":12,"column":0,"depth":2},"todays-todo":{"type":"header","text":"Today's Todo","value":"todays-todo","line":14,"column":0,"depth":3},"today-notes--ideas":{"type":"header","text":"Today Notes & ideas","value":"today-notes--ideas","line":20,"column":0,"depth":3},"ending-the-day":{"type":"header","text":"Ending the day","value":"ending-the-day","line":25,"column":0,"depth":2},"future-todo":{"type":"header","text":"Future Todo","value":"future-todo","line":27,"column":0,"depth":3}},"children":[],"parent":"wgc5uzvwqoxzgfws17ihtpn","data":{}},"body":"
2022-02-21
\n
Starting the day
\n
Today's Todo
\n
\n
Know a little bit more about dendron
\n
Check the bash code
\n\n
\n
Today Notes & ideas
\n
Work on fuzzy matching about the species list
\n
Ending the day
\n
Future Todo
\n
\n
Establish a dendron hierarchy reflecting the taxonomy of the botanical garden species
\n\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/4y3rowjuwqpbp005g82rrjb.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/4y3rowjuwqpbp005g82rrjb.json
new file mode 100644
index 000000000000..c934ce51ba58
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/4y3rowjuwqpbp005g82rrjb.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"4y3rowjuwqpbp005g82rrjb","title":"2023-03-20","desc":"","updated":1679468890644,"created":1679305060065,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.03.20","type":"note","vault":{"fsPath":"vault"},"contentHash":"60ec71286da7a7af6636944b31c1e289","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"gnps-dashboard-collaborative-exploration-of-mass-spectrometry-data-in-the-web-browser":{"type":"header","text":"GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser","value":"gnps-dashboard-collaborative-exploration-of-mass-spectrometry-data-in-the-web-browser","line":25,"column":0,"depth":3},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":63,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":68,"column":0,"depth":2}},"children":[],"parent":"ijpbaqnc0ewvgkwl0qq0m7e","data":{}},"body":"
GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser
\n
Petras, D., Phelan, V.V., Acharya, D. et al. GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser. Nat Methods 19, 134–136 (2022). https://doi.org/10.1038/s41592-021-01339-5
\n
\n
=> Developped to provide open and transparent solutions to use, share, inspect and reproduce mass spectrometry data analysis.
\n
\n
Enable remote and synchronous collaborative research in a common analysis environment for MS data analysis (same idea as Google Docs for example)\n
\n
Includes leader-follower synchronization (real-time updates from one lead user) and fully collaborative synchronization (real-time updates from multiple users)
\n
Followers can disconnect the synchronization to continue the analysis from where the leader left off
\n
\n
\n
Makes spectrometry data adherent to FAIR (findable, accessible, interoperable and reusable)
\n
Final state of the analysis is saved together with every discrete action, enabling inspection of the evolution of data analysis
\n
\n
Data:
\n
\n
All public data from compatible repositories can be selected using the GNPS dataset explorer
\n
Files not deposited in public MS repositories can be uploaded through a drag-and drop option for file transfer
\n
\n
Visualization:
\n
\n
enables inspection of \n
\n
total ion chromatograms,
\n
retention time versus m/z heat map,
\n
extracted ion chromatograms,
\n
tandem mass spectra for inspection/visualization of individual compounds
\n
and quantitative comparison of the peak abundances of two groups as boxplots
\n
\n
\n
all with publication-quality figures
\n
\n
Sharability:
\n
\n
shareable URL and QR code(for final visualization)\n
\n
empowers users to share the exact same visualization with colleagues, thus reducing miscommunication and improving data transparency
\n
\n
\n
\n
To sum up:
\n
Help improve MS data acccessibility and interoperability, lower barriers of entry for MS data analysis in the research environment and the classroom, encourage data transparency and sharing, and strengten the reproducibility of MS data analysis.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/4znf32ksin5t4737lj6rbeg.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/4znf32ksin5t4737lj6rbeg.json
new file mode 100644
index 000000000000..cc0eef5fd790
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/4znf32ksin5t4737lj6rbeg.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"BiCICKL-project.nanopublications.ressources.nanopublications","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345553,"created":1695629345553,"id":"4znf32ksin5t4737lj6rbeg","desc":"","links":[],"anchors":{},"children":["06hrtla5z9lgugnqt1y6y2h","xdhb87regj4u4mns68567x3"],"parent":"ivul4gk3y7gncrk8qg7phey","data":{},"title":"nanopublications"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/528nxdi7tm242o4m142jp61.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/528nxdi7tm242o4m142jp61.json
new file mode 100644
index 000000000000..5df05acecfef
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/528nxdi7tm242o4m142jp61.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"528nxdi7tm242o4m142jp61","title":"2023-05-05","desc":"","updated":1683270688169,"created":1683270553836,"traitIds":["open-notebook-ebruelhart"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2023.05.05","type":"note","vault":{"fsPath":"vault"},"contentHash":"99313c440f95c2982fb13b8d9cc986f4","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":16,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":18,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":20,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":26,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":28,"column":0,"depth":1}},"children":[],"parent":"2cv0y9hikhbt1jjla689ern","data":{}},"body":"
2023-05-05
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2023.05.05
\n
To do
\n
done
\n
Perspectives
\n
notes
\n
I had an idea to facilitate the adding of a layer on QGIS by making a python plugin for QGIS. This plugin will create a layer and set up it, so that everybody can create it without prior knowing on QGIS.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/5bn9phwme3mwpqs2gxa0ydc.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/5bn9phwme3mwpqs2gxa0ydc.json
new file mode 100644
index 000000000000..b4241676b358
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/5bn9phwme3mwpqs2gxa0ydc.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.lschwegler.2023.02","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345584,"created":1695629345584,"id":"5bn9phwme3mwpqs2gxa0ydc","desc":"","links":[],"anchors":{},"children":["r0xxex1f9ay56gbvbxordyv"],"parent":"2jubmyun9qey56cyfo8q9zy","data":{},"title":"02"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/5e8mwuzcvsa1op9fd5apt8e.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/5e8mwuzcvsa1op9fd5apt8e.json
new file mode 100644
index 000000000000..bb87e6243370
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/5e8mwuzcvsa1op9fd5apt8e.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"5e8mwuzcvsa1op9fd5apt8e","title":"2023-03-06","desc":"","updated":1678132355021,"created":1678131425833,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.03.06","type":"note","vault":{"fsPath":"vault"},"contentHash":"c6ea51c4062694c0111f1aa1cf8817f2","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":37,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":39,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":41,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":43,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":45,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":46,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":47,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":50,"column":0,"depth":2}},"children":[],"parent":"20mx26zgvnr7cc5nucidveu","data":{}},"body":"
Looking into possibilities for open source survey systems.
\n
Found this (which is not a survey system but a tool to facilitate decision making)\nFrama has a whole ecosystem of tools which can be of interest.\nNoting this down in case https://docs.framasoft.org/fr/loomio/
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/5ikmb6qdj2x03braqx4tjcp.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/5ikmb6qdj2x03braqx4tjcp.json
new file mode 100644
index 000000000000..adb594ff586c
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/5ikmb6qdj2x03braqx4tjcp.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"5ikmb6qdj2x03braqx4tjcp","title":"2023-06-19","desc":"","updated":1687191717769,"created":1687181602878,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.06.19","type":"note","vault":{"fsPath":"vault"},"contentHash":"0c3b6bc9aa1a3918f3505810f6675560","links":[],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":20,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":21,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":23,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":25,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":27,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":29,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":39,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":41,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":42,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":43,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":46,"column":0,"depth":2}},"children":[],"parent":"4vdnom6lqejdj7tre2evd8z","data":{}},"body":"
changer input folder / output folder sur .Yml + gnps ID + + project name
\n
changer
\n
prendre _result_repond.tsv (document ave taxonomie repondérer) dans cytoscape (importation d'une table mettre clé sur feature ID ) where to import table to selectle netwrk only
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/5ioljyxkuh1yfeq1ivfi0p4.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/5ioljyxkuh1yfeq1ivfi0p4.json
new file mode 100644
index 000000000000..53050383f872
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/5ioljyxkuh1yfeq1ivfi0p4.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"5ioljyxkuh1yfeq1ivfi0p4","title":"2022-12-19","desc":"","updated":1671711843212,"created":1671454857808,"traitIds":["open-notebook-mw"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2022.12.19","type":"note","vault":{"fsPath":"vault"},"contentHash":"585b1ea88b4f9dbbe40d7431c6e5ed28","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":22,"column":0,"depth":2},"autoincrementation-id":{"type":"header","text":"Autoincrementation id:","value":"autoincrementation-id","line":23,"column":0,"depth":4},"link-naturalist-id-pyinat-samples":{"type":"header","text":"link naturalist id pyinat-samples","value":"link-naturalist-id-pyinat-samples","line":44,"column":0,"depth":4},"notes":{"type":"header","text":"NOTES","value":"notes","line":73,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":75,"column":0,"depth":2}},"children":[],"parent":"rio2nla30r2q15iabe8v1dh","data":{}},"body":"
Should maybe create 2 columns to concat => one with autoincremented integer, second with project id (eg.DBGI)
\n
link naturalist id pyinat-samples
\n
UPDATE samples\nSET inaturalist_ID = pyinat.ID\nFROM pyinat WHERE samples.\"DBGI_SPL_ID\" = pyinat.EMI_external_ID;\n
\n
Then create a trigger to do that automatically:
\n
CREATE OR REPLACE FUNCTION update_emi_id()\nRETURNS TRIGGER AS $$\nBEGIN\n UPDATE samples\n SET inaturalist_ID = pyinat.ID\n FROM pyinat \n WHERE samples.\"DBGI_SPL_ID\" = pyinat.EMI_external_ID;\n RETURN NEW;\nEND;\n$$ LANGUAGE plpgsql;\n\nCREATE TRIGGER update_emi_id_trigger\nAFTER UPDATE OF EMI_external_ID ON pyinat\nFOR EACH ROW\nEXECUTE PROCEDURE update_emi_id();\n
\n
NOTES
\n
TODO NEXT
\n
\n
tuto for dummy => until 23.01
\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/5j6lia7v41dxhaatzsjvc6p.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/5j6lia7v41dxhaatzsjvc6p.json
new file mode 100644
index 000000000000..91619ef53acf
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/5j6lia7v41dxhaatzsjvc6p.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"5j6lia7v41dxhaatzsjvc6p","title":"2023-01-03","desc":"","updated":1672751600621,"created":1672751427329,"traitIds":["open-notebook-eb"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2023.01.03","type":"note","vault":{"fsPath":"vault"},"contentHash":"403feee680aa6bf2ad813cef5ece9729","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":24,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":28,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":30,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":32,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":34,"column":0,"depth":1}},"children":[],"parent":"rwwstq9pnk2fqonf946x951","data":{}},"body":"
2023-01-03
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2023.01.03
\n
To do
\n
\n
\n
Relabel the falcon with the bigger labels
\n
\n
\n
Try to host correctly the dbgi maps with geoserver
\n
\n
\n
Prepare the inserts for the mass spec analysis
\n
\n
\n
Optimize the communication between QGIS and iNaturalist
\n
\n
\n
done
\n
Today I tried to display the map on the website by creating à .js file and by adding some code in it (mapdisplay.js). However, for instance it doesn't work. I'll try later to make it work, but it seems better than what I've already done the 24th of december.
\n
Perspectives
\n
notes
\n
code
\n
links
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/5m89bxbrz8zq1eyf42ssl1u.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/5m89bxbrz8zq1eyf42ssl1u.json
new file mode 100644
index 000000000000..6e5c477493a6
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/5m89bxbrz8zq1eyf42ssl1u.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"5m89bxbrz8zq1eyf42ssl1u","title":"2023-05-30","desc":"","updated":1685953229440,"created":1685427802492,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.05.30","type":"note","vault":{"fsPath":"vault"},"contentHash":"b81cdadfa7b4cd9ed96472e4976c74ac","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"todo-browse-whole-dataset":{"type":"header","text":"TODO Browse whole dataset","value":"todo-browse-whole-dataset","line":21,"column":0,"depth":3},"code":{"type":"header","text":"CODE","value":"code","line":37,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":39,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":41,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":66,"column":0,"depth":2}},"children":[],"parent":"kpf9zs71io037d9pc13w2ky","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/5ny9w344zjft6o29hfrmxbx.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/5ny9w344zjft6o29hfrmxbx.json
new file mode 100644
index 000000000000..3835c8b9777b
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/5ny9w344zjft6o29hfrmxbx.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"5ny9w344zjft6o29hfrmxbx","title":"High_quantity_extraction","desc":"","updated":1687519482433,"created":1687518551385,"custom":{},"fname":"methodology.high_quantity_extraction","type":"note","vault":{"fsPath":"vault"},"contentHash":"c3a3ecbe3030e88d4a542e2f9db99320","links":[],"anchors":{"protocol-":{"type":"header","text":"Protocol :","value":"protocol-","line":10,"column":0,"depth":3}},"children":[],"parent":"iq3hz5b7sskcu56bl8pgbwq","data":{}},"body":"
High_quantity_extraction
\n
To monitor changes in analyses over time, we would like to set up a control system. 5 plantes were selected (dbgi_001028; dbgi_001029; dbgi_001030; dbgi_001031; dbgi_001032). Plant were lyophilized and conserved at -80°C
\n
Protocol :
\n
\n
5 g of grinded plant (with a motar) is extracted in 250 mL of methanol 100% using ultrasound bath during 30 minutes.
\n
The mixture is filtered on paper filter
\n
The supernatant is transfered in tared balloon and evorapoted to dryness using a rotary evaporator
\n
The dry extract is then solubilized at 5 mg/mL using methanol. Solutions are aliquotated (800 µL in 1.5 mL vial) and conserved in the freezer. 100 vials of 800 µL are realised per plant.\ns
\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/5pf2tb36csimke3supwk4dr.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/5pf2tb36csimke3supwk4dr.json
new file mode 100644
index 000000000000..69adcfc1f4dd
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/5pf2tb36csimke3supwk4dr.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"5pf2tb36csimke3supwk4dr","title":"2023-04-20","desc":"","updated":1682003813246,"created":1681988758088,"traitIds":["open-notebook-lschwegler"],"custom":{},"fname":"open-notebook.dbgi.lschwegler.2023.04.20","type":"note","vault":{"fsPath":"vault"},"contentHash":"f838547b122077d364a82091162e0347","links":[],"anchors":{"this-is-lenditas-dbgi-daily-open-notebook":{"type":"header","text":"This is Lendita's DBGI daily open-notebook.","value":"this-is-lenditas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":23,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":25,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":27,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":29,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":31,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":32,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":33,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":36,"column":0,"depth":2}},"children":[],"parent":"k1podevswt9ww6fu8pm77tt","data":{}},"body":"
Today I compressed the pictures from yesterday and imported them at iNaturalist. Then I also collected the rest of the plants. With the new Ipad 😊
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/5uozvp7b1csls1plu2kpdih.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/5uozvp7b1csls1plu2kpdih.json
new file mode 100644
index 000000000000..eec556f64cb6
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/5uozvp7b1csls1plu2kpdih.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"5uozvp7b1csls1plu2kpdih","title":"2023-05-24","desc":"","updated":1684944050302,"created":1684914766448,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.05.24","type":"note","vault":{"fsPath":"vault"},"contentHash":"c71622af95961f86ab62900c5237266a","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"lab-meeting":{"type":"header","text":"Lab meeting","value":"lab-meeting","line":25,"column":0,"depth":3},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":31,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":57,"column":0,"depth":2}},"children":[],"parent":"kpf9zs71io037d9pc13w2ky","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/5xi2kxvk62vfhpjcy6re666.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/5xi2kxvk62vfhpjcy6re666.json
new file mode 100644
index 000000000000..f22c1e51249d
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/5xi2kxvk62vfhpjcy6re666.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"5xi2kxvk62vfhpjcy6re666","title":"12","desc":"","updated":1688664793703,"created":1688664793703,"custom":{},"fname":"workshops.2023.07.12","type":"note","vault":{"fsPath":"vault"},"contentHash":"76017ce56755e5b28e5c3d8f019bafd1","links":[],"anchors":{},"children":["xrmkgb3quoc9wpj3rhthix3","mr8692oaa717fbwx3sny852"],"parent":"1pp8t915arv21vol7xltu9e","data":{}},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/61cgn3m1volch7385dhvltr.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/61cgn3m1volch7385dhvltr.json
new file mode 100644
index 000000000000..acba272c8096
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/61cgn3m1volch7385dhvltr.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"61cgn3m1volch7385dhvltr","title":"2023-02-09","desc":"","updated":1675932685659,"created":1675932665746,"traitIds":["open-notebook-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.02.09","type":"note","vault":{"fsPath":"vault"},"contentHash":"7c499f4c78e79885a0197497eb5cb583","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":23,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":25,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":29,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":31,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":33,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":34,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":35,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":38,"column":0,"depth":2}},"children":[],"parent":"g53xjv8ow93e7yy6srggzcf","data":{}},"body":"
Showed the principles of the Open Notebook to Marco
\n
\n
Notes
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/66jqbal9euipagyvgmctw48.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/66jqbal9euipagyvgmctw48.json
new file mode 100644
index 000000000000..ee133dc8dd5b
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/66jqbal9euipagyvgmctw48.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"66jqbal9euipagyvgmctw48","title":"2022-11-03","desc":"","updated":1672177534164,"created":1667483796806,"traitIds":["open-notebook-pma"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2022.11.03","type":"note","vault":{"fsPath":"vault"},"contentHash":"8c26c1895140af9bec186dc35ba11348","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2022.11.03","id":"66jqbal9euipagyvgmctw48","vaultName":"vault"},"value":"user.edouardbruelhart","alias":"@edouardbruelhart","position":{"start":{"line":20,"column":32,"offset":195},"end":{"line":20,"column":49,"offset":212},"indent":[]},"xvault":false,"to":{"fname":"user.edouardbruelhart"}},{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2022.11.03","id":"66jqbal9euipagyvgmctw48","vaultName":"vault"},"value":"bib.rutz_2022","position":{"start":{"line":27,"column":1,"offset":365},"end":{"line":27,"column":18,"offset":382},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"bib.rutz_2022"}},{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2022.11.03","id":"66jqbal9euipagyvgmctw48","vaultName":"vault"},"value":"bib.gaudry_2021","position":{"start":{"line":29,"column":1,"offset":384},"end":{"line":29,"column":20,"offset":403},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"bib.gaudry_2021"}},{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2022.11.03","id":"66jqbal9euipagyvgmctw48","vaultName":"vault"},"value":"bib.walker_2022","position":{"start":{"line":32,"column":1,"offset":406},"end":{"line":32,"column":20,"offset":425},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"bib.walker_2022"}},{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2022.11.03","id":"66jqbal9euipagyvgmctw48","vaultName":"vault"},"value":"open-notebook.dbgi.setup","position":{"start":{"line":52,"column":1,"offset":1150},"end":{"line":52,"column":29,"offset":1178},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook.dbgi.setup"}}],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"":{"type":"header","text":"","value":"","line":16,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":17,"column":0,"depth":3},"-2":{"type":"header","text":"","value":"-2","line":18,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":20,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":22,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":24,"column":0,"depth":2},"found-a-link-for-zotero-integration":{"type":"header","text":"Found a link for Zotero integration","value":"found-a-link-for-zotero-integration","line":26,"column":0,"depth":3},"chat-with-daniele-sylvestro":{"type":"header","text":"Chat with Daniele Sylvestro","value":"chat-with-daniele-sylvestro","line":51,"column":0,"depth":3},"deined-a-setup-for-daily-notes":{"type":"header","text":"Deined a setup for daily notes","value":"deined-a-setup-for-daily-notes","line":58,"column":0,"depth":3},"notes":{"type":"header","text":"Notes","value":"notes","line":64,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":66,"column":0,"depth":2},"-3":{"type":"header","text":"","value":"-3","line":68,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":69,"column":0,"depth":3},"-5":{"type":"header","text":"","value":"-5","line":70,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":73,"column":0,"depth":2}},"children":[],"parent":"zrjj57h4vzxsgrmg86kfq9y","data":{}},"body":"
We might prepare a joint Master thesis proposal which would have for objective to test hypothesis which will be useful for the DBGI. Notably regarding the correlation between Phylogenetic Diversity and metabolomes
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/6cwzu4c8qiv4kzr83kvfldw.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/6cwzu4c8qiv4kzr83kvfldw.json
new file mode 100644
index 000000000000..e55b8165fd78
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/6cwzu4c8qiv4kzr83kvfldw.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"6cwzu4c8qiv4kzr83kvfldw","title":"2022-12-30","desc":"","updated":1672428429445,"created":1672426508620,"traitIds":["open-notebook-pma"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2022.12.30","type":"note","vault":{"fsPath":"vault"},"contentHash":"595d5d28c38f36ce57edd4241af8717b","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"":{"type":"header","text":"","value":"","line":16,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":17,"column":0,"depth":3},"-2":{"type":"header","text":"","value":"-2","line":18,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":20,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":22,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":24,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":26,"column":0,"depth":2},"talked-with-daniel-mietchen-for-emi":{"type":"header","text":"Talked with Daniel Mietchen for EMI","value":"talked-with-daniel-mietchen-for-emi","line":28,"column":0,"depth":3},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":42,"column":0,"depth":2},"-3":{"type":"header","text":"","value":"-3","line":44,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":45,"column":0,"depth":3},"-5":{"type":"header","text":"","value":"-5","line":46,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":49,"column":0,"depth":2}},"children":[],"parent":"s6ozn8k96p7yh3er2vf9q6l","data":{}},"body":"
2022-12-30
\n
This is PMA's DBGI daily open-notebook.
\n
Today is 2022.12.30
\n
Todo today
\n
\n
\n
\n
Doing
\n
Paused
\n
Done
\n
Notes
\n
Talked with Daniel Mietchen for EMI
\n
But also on some DBGI related aspects.
\n
\n
\n
We might start with a RIO collection themed for DBGI first.
\n
\n
\n
we mentioned templates in order to facilitate inputs in daily notebooks.\nD. mentioned multiple templates existing at https://openwetware.org/wiki/Main_Page\nøõø~
guinea pigs should start the crash tests (for note taking and Open Notebook Science)
\n
\n
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/6f9wvdo0z5a36t1f365gdr5.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/6f9wvdo0z5a36t1f365gdr5.json
new file mode 100644
index 000000000000..1a4bfb59ca32
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/6f9wvdo0z5a36t1f365gdr5.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"6f9wvdo0z5a36t1f365gdr5","title":"2023-04-14","desc":"","updated":1681485496664,"created":1681456265147,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.04.14","type":"note","vault":{"fsPath":"vault"},"contentHash":"6dc2cb4c7e35c26b27435579cc267d1e","links":[],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":20,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":23,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":24,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":26,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":28,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":30,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":43,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":46,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":49,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":50,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":51,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":54,"column":0,"depth":2}},"children":[],"parent":"kc7cc1lgen7049um6b9vb1q","data":{}},"body":"
2023-04-14
\n
This is Audrey's DBGI daily open-notebook.
\n
Today is 2023.04.14
\n
Todo today
\n
\n
Download MZmine 2.53 + ProtéoWizard & try the treatment of coleus
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/6fgl93l2jddw283yhhejmna.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/6fgl93l2jddw283yhhejmna.json
new file mode 100644
index 000000000000..785f19023c7c
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/6fgl93l2jddw283yhhejmna.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"6fgl93l2jddw283yhhejmna","title":"2023-05-04","desc":"","updated":1683217278555,"created":1683216781516,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.05.04","type":"note","vault":{"fsPath":"vault"},"contentHash":"3d09b0ae5e8de1bad6843c3c0e1bb382","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":24,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":26,"column":0,"depth":2},"meeting-with-tobias-kuhn":{"type":"header","text":"Meeting with Tobias Kuhn","value":"meeting-with-tobias-kuhn","line":28,"column":0,"depth":3},"notes":{"type":"header","text":"Notes","value":"notes","line":55,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":57,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":59,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":60,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":61,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":64,"column":0,"depth":2}},"children":[],"parent":"j2l2hsespzdiqm6qlppt5pc","data":{}},"body":"
After tomorrow meeting with Ana and Tarcisio share a subgraph /or several of these) for Tobias to think about a Nanopub template
\n
checkin with Adriano as Tobias didn't have clearly our links in mind and our common research objectives, let's coordinate !
\n
\n
Tobias:
\n
\n
draft a nanopub template based on the proposed subgraphs
\n
\n
Notes
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/6racx5phy5ohu14wqgf61jg.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/6racx5phy5ohu14wqgf61jg.json
new file mode 100644
index 000000000000..0d5440a42fee
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/6racx5phy5ohu14wqgf61jg.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"6racx5phy5ohu14wqgf61jg","title":"2023-05-03","desc":"","updated":1683120763828,"created":1683120719497,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.05.03","type":"note","vault":{"fsPath":"vault"},"contentHash":"dfddd6f16e82181a2012433ac472ef91","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":22,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":24,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":31,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":35,"column":0,"depth":2}},"children":[],"parent":"kpf9zs71io037d9pc13w2ky","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/6wf4nyadhqx87k85fw3rnp9.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/6wf4nyadhqx87k85fw3rnp9.json
new file mode 100644
index 000000000000..de6849526608
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/6wf4nyadhqx87k85fw3rnp9.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"6wf4nyadhqx87k85fw3rnp9","title":"2023-03-08","desc":"","updated":1678284262194,"created":1678280454978,"traitIds":["open-notebook-lschwegler"],"custom":{},"fname":"open-notebook.dbgi.lschwegler.2023.03.08","type":"note","vault":{"fsPath":"vault"},"contentHash":"fe1194f9d6f97a2408b397f405ce29ab","links":[],"anchors":{"this-is-lenditas-dbgi-daily-open-notebook":{"type":"header","text":"This is Lendita's DBGI daily open-notebook.","value":"this-is-lenditas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":23,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":25,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":27,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":43,"column":0,"depth":2},"w":{"type":"header","text":"w","value":"w","line":45,"column":0,"depth":3},"-2":{"type":"header","text":"","value":"-2","line":46,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":47,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":50,"column":0,"depth":2}},"children":[],"parent":"fvmwxnhp9vq9cdbnjkn6slr","data":{}},"body":"
Today, together with Edouard, I looked at the plant samples that we froze dry last week. 3 out of 5 not sliced succulents were still wet.
\n
\n
dbgi_000921: sliced and dbgi_000919: not sliced --> not completely dry!
\n
dbgi_000992: sliced and dbgi_001013: not sliced --> not completely dry!
\n
dbgi_000991: sliced and dbgi_000913: not sliced
\n
dbgi_000915: sliced and dbgi_001017: not sliced --> not completely dry!
\n
dbgi_000922: sliced and dbgi_000998: not sliced
\n
\n
This means that when I take the samples I have to decide whether to slice them or not, and with the larger succulent leaves it has now been shown that it is worth slicing them.
\n
Questions for the meeting on Thursday, 09.03.2023:
\n
\n
Is it now possible to dry the 3 not quite dry samples again?
\n
Because of the pregnancy I cannot work in the lab, should I put the balance in Edouard's office and weigh there?
\n
Should I work with liquid nitrogen or with silica gel en orange perles?
\n
\n
Todo tomorrow
\n
w
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/76hu8527lw5c0i05b3epxub.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/76hu8527lw5c0i05b3epxub.json
new file mode 100644
index 000000000000..6f4b99c67e1f
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/76hu8527lw5c0i05b3epxub.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"meet.2023","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345551,"created":1695629345551,"id":"76hu8527lw5c0i05b3epxub","desc":"","links":[],"anchors":{},"children":["mdvxyh9b9lv59at04h9g39k"],"parent":"ayiiu4mlsoppocmondmfe6p","data":{},"title":"2023","schema":{"schemaId":"bvv3vclgxuhme0phl9nkjqy","moduleId":"meet"}},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/7e5d8r3w17f3p4225ndatlu.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/7e5d8r3w17f3p4225ndatlu.json
new file mode 100644
index 000000000000..fd87fb1c4e15
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/7e5d8r3w17f3p4225ndatlu.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"7e5d8r3w17f3p4225ndatlu","title":"2022-12-15","desc":"","updated":1671101658069,"created":1671101227053,"traitIds":["open-notebook-eb"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2022.12.15","type":"note","vault":{"fsPath":"vault"},"contentHash":"53e211728102a31c8f3c4e8e4bb55cc4","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":16,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":18,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":20,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":30,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":32,"column":0,"depth":1}},"children":[],"parent":"jb94w8oc7a9tv04izb0g544","data":{}},"body":"
2022-12-15
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2022.12.15
\n
To do
\n
done
\n
Perspectives
\n
notes
\n
Discussion with Pierre-Marie about the analysis of the batch in progress. No analyse before 2023. But needs some preparations
\n
To prepare :
\n
\n
20 samples of the first batch, 10 with silica and 10 with liquid nitrogen to see how it conserves. From the plant samples
\n
20 samples of the first extract batch to control the quality of the conserved extracts. From the plant extracts
\n
Prepare the new and old samples to the analysis (300microliter in the inserts)
\n
\n
Labels are not working very well, possibility to have a labeler, or find a good process to print labels correctly
\n
code
\n
links
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/7eiph29dn4lttq8fgo3c6lw.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/7eiph29dn4lttq8fgo3c6lw.json
new file mode 100644
index 000000000000..40c3ecfecbc1
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/7eiph29dn4lttq8fgo3c6lw.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"7eiph29dn4lttq8fgo3c6lw","title":"2023-03-06","desc":"","updated":1678115376780,"created":1678089052757,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.03.06","type":"note","vault":{"fsPath":"vault"},"contentHash":"ff36a36dc9350b6c15af70db7d70b7d3","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":24,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":26,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":32,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":36,"column":0,"depth":2}},"children":[],"parent":"ijpbaqnc0ewvgkwl0qq0m7e","data":{}},"body":"
had to modify the display_hover function in a callback => seems to work!
\n
\n
\n
\n
TODO NEXT
\n
Important for redaction
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/7fl4cu3b0ihzfwpnyghmes8.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/7fl4cu3b0ihzfwpnyghmes8.json
new file mode 100644
index 000000000000..320d99958e78
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/7fl4cu3b0ihzfwpnyghmes8.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"7fl4cu3b0ihzfwpnyghmes8","title":"2023-02-23","desc":"","updated":1677160287741,"created":1677138085779,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.02.23","type":"note","vault":{"fsPath":"vault"},"contentHash":"5ecb7f76d7656aaadedd2e32160aa85a","links":[{"from":{"fname":"open-notebook.dbgi.mwannier.2023.03.08","id":"rd064po8dsa3zn3qo2q2b3x","vaultName":"vault"},"type":"backlink","position":{"start":{"line":31,"column":1,"offset":756},"end":{"line":31,"column":46,"offset":801},"indent":[]},"value":"open-notebook.dbgi.mwannier.2023.02.23"}],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":36,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":41,"column":0,"depth":2},"important-point-of-my-project":{"type":"header","text":"Important point of my project","value":"important-point-of-my-project","line":43,"column":0,"depth":3}},"children":[],"parent":"3q0f349eurhhy0r6e1to0d2","data":{}},"body":"
2023-02-23
\n
This is Maëlle's DBGI daily open-notebook.
\n
Today is 2023.02.23
\n
TODO
\n
\n
Meeting with pma - 10am
\n
add dashboard on dbgi github
\n
\n
CODE
\n
NOTES
\n
To discuss in meeting:
\n
\n
molplotly doesn't show the molecules
\n
dash should be the best
\n
template for directus
\n
\n
molplotly doesn't show the molecules => problem was in molplotly scripts \nBut still doesn't appear when on a multipage app => issue github
\n
TODO NEXT
\n
\n
Run GNPS on local
\n
issue moltplotly
\n
\n
Important for redaction
\n
Important point of my project
\n
(refer to ChordB proposal for details)
\n\n
establish a Dashboard to view \"LOTUS type data\"
\n\n
\n
molecular structures\n
\n
molecular structure metadata
\n
molecular structure taxonomies
\n
\n
\n
biological organisms\n
\n
biological organisms structure metadata
\n
biological organisms structure taxonomies
\n
\n
\n
\n
This Dashboard can feed on static tabular files
\n\n
establish a Dashboard to view \"DBGI type data\"
\n\n
\"DBGI type data\" = \"LOTUS type data\" + mass spectrometry data
\n
\n
LCMS profiles
\n
spectrums
\n
\n
cf. GNPS LCMS Dashboard
\n
This Dashboard can feed on static tabular files + Mass spec files
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/7hhjzqsoanl33skn32r16i4.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/7hhjzqsoanl33skn32r16i4.json
new file mode 100644
index 000000000000..cea481072423
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/7hhjzqsoanl33skn32r16i4.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"7hhjzqsoanl33skn32r16i4","title":"2022-11-29","desc":"","updated":1671710565150,"created":1669728500125,"traitIds":["open-notebook-eb"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2022.11.29","type":"note","vault":{"fsPath":"vault"},"contentHash":"6cf435c99dc241ee80a8b1f970ff59b7","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":16,"column":0,"depth":1},"reminder":{"type":"header","text":"Reminder","value":"reminder","line":19,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":53,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":55,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":57,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":59,"column":0,"depth":1}},"children":[],"parent":"f5s4h26cmipsm6itdloyva0","data":{}},"body":"
2022-11-29
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2022.11.29
\n
To do
\n
done
\n
Today I finished the processus for the JBN map.
\n
Reminder
\n
To remind, for the COG (Cloud Optimized Geotiff) translation, I use the cogprep where I installed gdal
\n
Creation of the environment and installation of gdal (windows):
\n
\n
\n
open anaconda3 prompt
\n
\n
\n
type : conda create --name cogprep
\n
\n
\n
type : conda activate cogprep
\n
\n
\n
type : conda install -c conda-forge gdal. It should install without error the 3.6.1 version of gdal
\n
\n
\n
Conversion of the tif to cog tif :
\n
\n
\n
Download the validation code here, unzip it and place the tif inside this folder
\n
\n
\n
On anaconda3 prompt go to the folder with the cd function, for example : cd .\\desktop\\DBGI_project\\cog_validator-master\\
\n
\n
\n
Test if the tif is a cog tif with the command : python validate_cloud_optimized_geotiff.py name_of_your_tif.tif. It should indicate : name_of_your_tif.tif is NOT a valid cloud optimized Geotiff.
\n
\n
\n
type : gdal_translate name_of_your_tif.tif name_of_your_tif_cog.tif -of COG -co COMPRESS=LZW
\n
\n
\n
Now the tif should be translated to cog tif. To control, redo the command : python validate_cloud_optimized_geotiff.py name_of_your_tif_cog.tif. It should now indicate : name_of_your_tif_cog.tif is a valid cloud optimized GeoTIFF.
\n
\n
\n
You can now take the cog tif to import it on QGIS.
\n
If you have warnings concerning the projection used (EPSG:2056), you can do an extra operation as following :
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/7k73rajy7yof0hrvo43hgs3.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/7k73rajy7yof0hrvo43hgs3.json
new file mode 100644
index 000000000000..56cb87fc9f25
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/7k73rajy7yof0hrvo43hgs3.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"7k73rajy7yof0hrvo43hgs3","title":"2023-07-05","desc":"","updated":1688567297174,"created":1688535860011,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.07.05","type":"note","vault":{"fsPath":"vault"},"contentHash":"1060575af8aff058c0eba1da612e489d","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":86,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":101,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":105,"column":0,"depth":2}},"children":[],"parent":"wwzjtgx2uhjbijqzagd3x3m","data":{}},"body":"
returnnewPromise((resolve, reject)=>{\n const nodes =[];\n let headers =[];\n\n repository.query(payload).then((stream)=>{\n stream.on('data',(bindings)=>{\n const node ={};\n for(const binding in bindings){\n if(bindings.hasOwnProperty(binding)){\n node[binding]= bindings[binding].value;// use binding as id and bindings[binding].value as label\n if(!headers.includes(binding)){\n headers.push(binding);// add the binding to the headers if it's not already there\n }\n }\n }\n nodes.push(node);\n });\n stream.on('end',()=>{\n // Resolve the promise with the graph data and the headers when the stream ends\n resolve({nodes: nodes,headers: headers});\n });\n
Structure du graph => comment faire la figure?\n=> see article
\n
Lien GNPS\n=> OK
\n
\n
=> meeting at 2pm
\n
TODO NEXT
\n
Important for redaction
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/7mm3yj2312qrzrcssxb7x9z.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/7mm3yj2312qrzrcssxb7x9z.json
new file mode 100644
index 000000000000..ce6bc6e48af7
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/7mm3yj2312qrzrcssxb7x9z.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"7mm3yj2312qrzrcssxb7x9z","title":"2022-03-23","desc":"","updated":1655027552036,"created":1648038806533,"traitIds":["journalNote"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2022.03.23","type":"note","vault":{"fsPath":"vault"},"contentHash":"0026c3383fd74068ab13885a82c2c55b","links":[],"anchors":{"starting-the-day":{"type":"header","text":"Starting the day","value":"starting-the-day","line":12,"column":0,"depth":2},"todays-todo":{"type":"header","text":"Today's Todo","value":"todays-todo","line":16,"column":0,"depth":3},"today-notes--ideas":{"type":"header","text":"Today Notes & ideas","value":"today-notes--ideas","line":22,"column":0,"depth":3},"ending-the-day":{"type":"header","text":"Ending the day","value":"ending-the-day","line":27,"column":0,"depth":2},"future-todo":{"type":"header","text":"Future Todo","value":"future-todo","line":29,"column":0,"depth":3}},"children":[],"parent":"oysesv3d976s837b9j76nhg","data":{}},"body":"
Some solutions for the bibliography have been added to the buffer-dbgi note.
\n
Ending the day
\n
Future Todo
\n
\n
See with PMA what's best for the bibliography and discuss about the zotero settings to have a unified import
\n
Continue the writing of the document
\n
Continue to inform about the subject
\n
Finding how to add the wikipedia and OTL link to all categories in the taxonomy
\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/7o1gfpiouo5e34tr0otrtb2.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/7o1gfpiouo5e34tr0otrtb2.json
new file mode 100644
index 000000000000..4b30ea763fdd
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/7o1gfpiouo5e34tr0otrtb2.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"7o1gfpiouo5e34tr0otrtb2","title":"Mwannier","desc":"","updated":1677573650452,"created":1676013866587,"custom":{},"fname":"templates.open-notebook.dbgi.mwannier","type":"note","vault":{"fsPath":"vault"},"contentHash":"8e0d33ac535a3a67a1d0b269b083c078","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":8,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":13,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":18,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":20,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":22,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":26,"column":0,"depth":2}},"children":[],"parent":"b51e1k7qbe6jj1quhxnag04","data":{}},"body":"
Mwannier
\n
This is Maëlle's DBGI daily open-notebook.
\n
Today is {{ CURRENT_YEAR }}.{{ CURRENT_MONTH }}.{{ CURRENT_DAY }}
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/7r9pd76ezkn4l4ksdi76z06.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/7r9pd76ezkn4l4ksdi76z06.json
new file mode 100644
index 000000000000..48c8b69663b5
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/7r9pd76ezkn4l4ksdi76z06.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"7r9pd76ezkn4l4ksdi76z06","title":"2022-11-10","desc":"","updated":1668153356000,"created":1668090775745,"traitIds":["open-notebook-eb"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2022.11.10","type":"note","vault":{"fsPath":"vault"},"contentHash":"6aa5548f4a36f75b74f7b8676f397a68","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1}},"children":[],"parent":"f5s4h26cmipsm6itdloyva0","data":{}},"body":"
2022-11-10
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2022.11.10
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/7tkcxc8tg11jeuax6k1aqc4.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/7tkcxc8tg11jeuax6k1aqc4.json
new file mode 100644
index 000000000000..a2df4132e963
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/7tkcxc8tg11jeuax6k1aqc4.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"7tkcxc8tg11jeuax6k1aqc4","title":"2023-05-12","desc":"","updated":1683903057732,"created":1683902545724,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.05.12","type":"note","vault":{"fsPath":"vault"},"contentHash":"4fd7f8ae8cbf442db5a7c6aafb676f94","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.alecabec.2023.05.12","id":"7tkcxc8tg11jeuax6k1aqc4","vaultName":"vault"},"value":"Bachelor-Work-2022","position":{"start":{"line":35,"column":51,"offset":800},"end":{"line":35,"column":73,"offset":822},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"Bachelor-Work-2022"}}],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":20,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":21,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":23,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":25,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":27,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":49,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":51,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":53,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":54,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":55,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":58,"column":0,"depth":2}},"children":[],"parent":"tvdn3jw4nqebyf7hozvvddb","data":{}},"body":"
1/ Collect plant from Jbuf (the one not in the system)
\n
\n
\n
Clematis alpina (plaine protégée)
\n
\n
\n
Clematis alpina (alp. calcaire 1)
\n
\n
\n
Clematis recta (médicinale)
\n
\n
\n
Clemais viticella (pav. vert)
\n
\n
\n
Lonicera alpigena (alp. calcaire 3)
\n
\n
\n
Lonicera caerula (alp. calcaire 5)
\n
\n
\n
Lonicera japonica 'helliana' (entrée AMI)
\n
\n
\n
Lonicera nigra (alp. calcaire 2)
\n
\n
\n
Euonymus fortunei (cour)
\n
\n
\n
NB: Clematis rehderiana do not exist anymore in the garden but panel is still present
\n
Plant were collected according the dbgi protocole Bachelor Work 2022 ; fews leaves of plant were collected and put into coffee filter and then into a falcon with pre drilled plastic caps. Falcon are placed into ice during the harvesting before beeing lyophilized. Falcon are placed at -70°C before being freeze drying.
\n
2/Put plant in the freeze dryer
\n
Notes
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/7twqf9cv9ig11s331e289u0.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/7twqf9cv9ig11s331e289u0.json
new file mode 100644
index 000000000000..52574ff2561b
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/7twqf9cv9ig11s331e289u0.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"7twqf9cv9ig11s331e289u0","title":"2023-04-20","desc":"","updated":1681979921208,"created":1681979811533,"traitIds":["open-notebook-ebruelhart"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2023.04.20","type":"note","vault":{"fsPath":"vault"},"contentHash":"58138b51831e77f711d94e357e9830d5","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":16,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":18,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":20,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":22,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":24,"column":0,"depth":1}},"children":[],"parent":"tdh4km6qoyitvdxue4dqxlp","data":{}},"body":"
2023-04-20
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2023.04.20
\n
To do
\n
done
\n
Perspectives
\n
notes
\n
code
\n
links
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/7xu7tswjwm8la8iut99jxs9.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/7xu7tswjwm8la8iut99jxs9.json
new file mode 100644
index 000000000000..177b6a4eb3e0
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/7xu7tswjwm8la8iut99jxs9.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"7xu7tswjwm8la8iut99jxs9","title":"Opentreeoflife_2019","desc":"","updated":1656059639673,"created":1656059639673,"isDir":false,"custom":{"isDir":false},"fname":"biblio.opentreeoflife_2019","type":"note","vault":{"fsPath":"vault"},"contentHash":"c14d5449e8e0f03dcdbbf5e694dd8719","links":[{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019","id":"7xu7tswjwm8la8iut99jxs9","vaultName":"vault"},"value":"article","position":{"start":{"line":5,"column":14,"offset":62},"end":{"line":5,"column":25,"offset":73},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"article"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019","id":"7xu7tswjwm8la8iut99jxs9","vaultName":"vault"},"value":"opentreeoflife","position":{"start":{"line":6,"column":12,"offset":85},"end":{"line":6,"column":30,"offset":103},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"opentreeoflife"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019","id":"7xu7tswjwm8la8iut99jxs9","vaultName":"vault"},"value":"benjamin-redelings","position":{"start":{"line":6,"column":33,"offset":106},"end":{"line":6,"column":55,"offset":128},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"benjamin-redelings"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019","id":"7xu7tswjwm8la8iut99jxs9","vaultName":"vault"},"value":"luna-luisa-sanchez-reyes","position":{"start":{"line":6,"column":57,"offset":130},"end":{"line":6,"column":85,"offset":158},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"luna-luisa-sanchez-reyes"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019","id":"7xu7tswjwm8la8iut99jxs9","vaultName":"vault"},"value":"karen-a.-cranston","position":{"start":{"line":6,"column":87,"offset":160},"end":{"line":6,"column":108,"offset":181},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"karen-a.-cranston"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019","id":"7xu7tswjwm8la8iut99jxs9","vaultName":"vault"},"value":"jim-allman","position":{"start":{"line":6,"column":110,"offset":183},"end":{"line":6,"column":124,"offset":197},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"jim-allman"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019","id":"7xu7tswjwm8la8iut99jxs9","vaultName":"vault"},"value":"mark-t.-holder","position":{"start":{"line":6,"column":126,"offset":199},"end":{"line":6,"column":144,"offset":217},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"mark-t.-holder"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019","id":"7xu7tswjwm8la8iut99jxs9","vaultName":"vault"},"value":"emily-jane-mctavish","position":{"start":{"line":6,"column":146,"offset":219},"end":{"line":6,"column":169,"offset":242},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"emily-jane-mctavish"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019","id":"7xu7tswjwm8la8iut99jxs9","vaultName":"vault"},"value":"2019-12-23","position":{"start":{"line":7,"column":9,"offset":251},"end":{"line":7,"column":23,"offset":265},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2019-12-23"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019","id":"7xu7tswjwm8la8iut99jxs9","vaultName":"vault"},"value":"2022-03-01","position":{"start":{"line":8,"column":15,"offset":280},"end":{"line":8,"column":29,"offset":294},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-03-01"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019","id":"7xu7tswjwm8la8iut99jxs9","vaultName":"vault"},"value":"taxonomy","position":{"start":{"line":12,"column":11,"offset":487},"end":{"line":12,"column":23,"offset":499},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"taxonomy"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019","id":"7xu7tswjwm8la8iut99jxs9","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":13,"column":3,"offset":502},"end":{"line":13,"column":10,"offset":509},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019","id":"7xu7tswjwm8la8iut99jxs9","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":13,"column":12,"offset":511},"end":{"line":13,"column":29,"offset":528},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019","id":"7xu7tswjwm8la8iut99jxs9","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":13,"column":31,"offset":530},"end":{"line":13,"column":41,"offset":540},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019","id":"7xu7tswjwm8la8iut99jxs9","vaultName":"vault"},"value":"opentreeoflife_2019---other","position":{"start":{"line":26,"column":3,"offset":897},"end":{"line":26,"column":34,"offset":928},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"opentreeoflife_2019---other"}}],"anchors":{"open-tree-of-life-synthetic-tree":{"type":"header","text":"Open Tree of Life Synthetic Tree","value":"open-tree-of-life-synthetic-tree","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"abstract":{"type":"header","text":"Abstract","value":"abstract","line":22,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":27,"column":0,"depth":2},"highlights-and-annotations":{"type":"header","text":"Highlights and Annotations","value":"highlights-and-annotations","line":31,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
Open Tree of Life aims to construct a comprehensive, dynamic and digitally-available tree of life by synthesizing published phylogenetic trees along with taxonomic data.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/831ax1rnra2jqycbj2lcvgq.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/831ax1rnra2jqycbj2lcvgq.json
new file mode 100644
index 000000000000..6443d8cb1bd7
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/831ax1rnra2jqycbj2lcvgq.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.ebruelhart.2023.07","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345581,"created":1695629345581,"id":"831ax1rnra2jqycbj2lcvgq","desc":"","links":[],"anchors":{},"children":["wkcv9ptmrqgwqcnge34lwb5"],"parent":"oa2ug1z440tznkfspdpf4fz","data":{},"title":"07"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/8b0ugb6ih7b94p7yy28svyy.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/8b0ugb6ih7b94p7yy28svyy.json
new file mode 100644
index 000000000000..a8e13ab5f4fe
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/8b0ugb6ih7b94p7yy28svyy.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"8b0ugb6ih7b94p7yy28svyy","title":"2023-05-05","desc":"","updated":1683268323818,"created":1683268199022,"traitIds":["open-notebook-lschwegler"],"custom":{},"fname":"open-notebook.dbgi.lschwegler.2023.05.05","type":"note","vault":{"fsPath":"vault"},"contentHash":"c18de464110e765348e0309aa5a1f2e7","links":[],"anchors":{"this-is-lenditas-dbgi-daily-open-notebook":{"type":"header","text":"This is Lendita's DBGI daily open-notebook.","value":"this-is-lenditas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":23,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":25,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":27,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":30,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":32,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":33,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":34,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":37,"column":0,"depth":2}},"children":[],"parent":"giitkp9yhfqe7cosjgh4t6h","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/8duum2njm3z1sm4nnvgy93s.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/8duum2njm3z1sm4nnvgy93s.json
new file mode 100644
index 000000000000..6a591b6511ef
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/8duum2njm3z1sm4nnvgy93s.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.pmallard.2023.06","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345612,"created":1695629345612,"id":"8duum2njm3z1sm4nnvgy93s","desc":"","links":[],"anchors":{},"children":["muctzzo3wicwfunt4wz99tn","1n9kw635ospnbwjvismwj9u","d2q46bncdvjrt49sj5mf2un","3wig5i4paj4ke7klvchx6qa","fd5fcsxalusp1xece0qiwkk"],"parent":"kdf7w680pcf9ofqywy9qgyl","data":{},"title":"06"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/8ept2yu5gzdhgqmb7480xvv.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/8ept2yu5gzdhgqmb7480xvv.json
new file mode 100644
index 000000000000..09a68660e347
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/8ept2yu5gzdhgqmb7480xvv.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"8ept2yu5gzdhgqmb7480xvv","title":"2023-05-31","desc":"","updated":1685527270979,"created":1685523142091,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.05.31","type":"note","vault":{"fsPath":"vault"},"contentHash":"8e9836c1a610198c122d5ed2e1742d2a","links":[],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":18,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":21,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":22,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":24,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":26,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":28,"column":0,"depth":2},"ornamental-project---preparation-of-vials-for-lc-ms-analysis-2025-05-30":{"type":"header","text":"Ornamental project - preparation of vials for LC-MS analysis (2025-05-30)","value":"ornamental-project---preparation-of-vials-for-lc-ms-analysis-2025-05-30","line":29,"column":0,"depth":3},"ornamental-project---analysis-parameters-used":{"type":"header","text":"Ornamental project - analysis parameters used","value":"ornamental-project---analysis-parameters-used","line":35,"column":0,"depth":3},"ornemental-project---data-treatment":{"type":"header","text":"Ornemental project - data treatment","value":"ornemental-project---data-treatment","line":40,"column":0,"depth":3},"notes":{"type":"header","text":"Notes","value":"notes","line":45,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":47,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":49,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":50,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":51,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":54,"column":0,"depth":2}},"children":[],"parent":"tvdn3jw4nqebyf7hozvvddb","data":{}},"body":"
Ornamental project - preparation of vials for LC-MS analysis (2025-05-30)
\n
150 µL of extracts or blank were transfert to a vial for further analysis, QC was realised with 5 µL of the 38 samples.
\n
labellisation :\nDBGI_xxxxxx_01_03 refer to vial prepared on may 30th and send to NE (transported on ice and conserved at +4°C waiting for analysis)
\n
Ornamental project - analysis parameters used
\n
The following LC parameters were used :
\n
The following MS parameters were used :
\n
Ornemental project - data treatment
\n
1/ raw data were converted into mzXML files using MS convert
\n
Notes
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/8lh10mwrs3hq3npcubl3ndj.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/8lh10mwrs3hq3npcubl3ndj.json
new file mode 100644
index 000000000000..9b1253680796
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/8lh10mwrs3hq3npcubl3ndj.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"8lh10mwrs3hq3npcubl3ndj","title":"2023-02-08","desc":"","updated":1675868671413,"created":1675842190513,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.02.08","type":"note","vault":{"fsPath":"vault"},"contentHash":"a1950e2fc24c717b5907b9fe3e54b015","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":31,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":33,"column":0,"depth":2},"gnps-dashboard":{"type":"header","text":"GNPS dashboard","value":"gnps-dashboard","line":35,"column":0,"depth":3},"npclassifier":{"type":"header","text":"NPClassifier","value":"npclassifier","line":40,"column":0,"depth":3},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":46,"column":0,"depth":2}},"children":[],"parent":"3q0f349eurhhy0r6e1to0d2","data":{}},"body":"
2023-02-08
\n
This is Maëlle's DBGI daily open-notebook.
\n
Today is 2023.02.08
\n
TODO
\n
\n
prepare presentation for DBGI meeting
\n
Read articles/look examples from open-notebook.pmallard.2023.02.07.md \n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/8ssbwflafvawcjbtofvfiuq.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/8ssbwflafvawcjbtofvfiuq.json
new file mode 100644
index 000000000000..645108421a96
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/8ssbwflafvawcjbtofvfiuq.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.mwannier.2023.01","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345591,"created":1695629345591,"id":"8ssbwflafvawcjbtofvfiuq","desc":"","links":[],"anchors":{},"children":["v2nr0qvs7lm0caryei97f4u"],"parent":"hjgld8jupnd9k7kzqe0ubra","data":{},"title":"01"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/8u9qb1u3gp4e3osrb73xvor.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/8u9qb1u3gp4e3osrb73xvor.json
new file mode 100644
index 000000000000..8c96f9595abd
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/8u9qb1u3gp4e3osrb73xvor.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"8u9qb1u3gp4e3osrb73xvor","title":"Fundings","desc":"","updated":1672499927365,"created":1672499912729,"custom":{},"fname":"fundings","type":"note","vault":{"fsPath":"vault"},"contentHash":"434a21d7a4056da31a8171ee4e03a0ad","links":[{"from":{"fname":"open-notebook.dbgi.pmallard.2022.12.31","id":"wjbg6tl4gd7nqyegd8gmsrw","vaultName":"vault"},"type":"backlink","position":{"start":{"line":27,"column":11,"offset":372},"end":{"line":27,"column":23,"offset":384},"indent":[]},"value":"fundings"}],"anchors":{"ressources":{"type":"header","text":"Ressources","value":"ressources","line":8,"column":0,"depth":2}},"children":[],"parent":"txkHnVTI9AawnquiublXO","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/8w3q1chl20rs3sjp6x97v18.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/8w3q1chl20rs3sjp6x97v18.json
new file mode 100644
index 000000000000..9d601d021393
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/8w3q1chl20rs3sjp6x97v18.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.lcappelletti.2023","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345583,"created":1695629345583,"id":"8w3q1chl20rs3sjp6x97v18","desc":"","links":[],"anchors":{},"children":["sef56d6u8k6dnm61naamfmz","p2qm1kmy4dcnmxjh0agsjms"],"parent":"07v05lsxheiyzag47lp0ra7","data":{},"title":"2023"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/8ydxt86g2zi3p99fraumr29.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/8ydxt86g2zi3p99fraumr29.json
new file mode 100644
index 000000000000..f6cfbadbab3e
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/8ydxt86g2zi3p99fraumr29.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"8ydxt86g2zi3p99fraumr29","title":"2023-03-08","desc":"","updated":1678256977544,"created":1678256970990,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.03.08","type":"note","vault":{"fsPath":"vault"},"contentHash":"a2e20f20f5eb1fe8a491d282bce9821d","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":24,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":26,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":28,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":42,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":44,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":45,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":46,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":49,"column":0,"depth":2}},"children":[],"parent":"20mx26zgvnr7cc5nucidveu","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/9676i362aou4xnjhjczonjx.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/9676i362aou4xnjhjczonjx.json
new file mode 100644
index 000000000000..316b3100fc7d
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/9676i362aou4xnjhjczonjx.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"meetings.2023.02.22.program.notes","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345622,"created":1695629345622,"id":"9676i362aou4xnjhjczonjx","desc":"","links":[],"anchors":{},"children":["sfencnlxrgzr2ffrf1gy32w","viyndxj85kbuiit4npcx249","e5fq3ox8d3towvxhncf8fhw","f1b58fewgynd36i6voll7gc","zf5npe5w0sve2isc1q9s8gc","jw4pq186ky5v60f1xrk9z84","c40aj2zry2u1082ouweo1n4","a8dn6e97qtmq2fpdql1q3mp","mb3gnhkuhjgvnyag0d7f0ga"],"parent":"33r62tekbrtckkfadan4kwj","data":{},"title":"Notes"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/9f3q0f4mb6290b4topikcz1.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/9f3q0f4mb6290b4topikcz1.json
new file mode 100644
index 000000000000..cd06d6b8a537
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/9f3q0f4mb6290b4topikcz1.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"9f3q0f4mb6290b4topikcz1","title":"2023-06-05","desc":"","updated":1686043105973,"created":1685982381757,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.06.05","type":"note","vault":{"fsPath":"vault"},"contentHash":"63f87d34253ce860d7f5565807083d09","links":[],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":20,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":21,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":23,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":26,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":28,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":30,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":32,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":34,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":35,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":36,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":39,"column":0,"depth":2}},"children":[],"parent":"4vdnom6lqejdj7tre2evd8z","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/9gjxhmy8g78ehub7udeszxy.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/9gjxhmy8g78ehub7udeszxy.json
new file mode 100644
index 000000000000..67455c314958
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/9gjxhmy8g78ehub7udeszxy.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.pmallard.2023.08","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345616,"created":1695629345616,"id":"9gjxhmy8g78ehub7udeszxy","desc":"","links":[],"anchors":{},"children":["0ws1ec7jyww4ks747qv1amt","cm2e2wpc8piw6qco896meya","m1240xev45nrrsu7p29orad","eq09pttksiqib40wh6i4rbv","p92dof7843ap4repef4b74c","m0n5ausa94od3m00dnqrhy9","a9fiyj2ozc1kze7k38sjo8v"],"parent":"kdf7w680pcf9ofqywy9qgyl","data":{},"title":"08"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/9jnk8rctu6gz3arc5v1lom0.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/9jnk8rctu6gz3arc5v1lom0.json
new file mode 100644
index 000000000000..4c009b2aaee1
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/9jnk8rctu6gz3arc5v1lom0.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"9jnk8rctu6gz3arc5v1lom0","title":"2023-06-15","desc":"","updated":1686822932692,"created":1686820314568,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.06.15","type":"note","vault":{"fsPath":"vault"},"contentHash":"3adb2545b20b050f151211c74ba9b20f","links":[],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":20,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":21,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":23,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":25,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":27,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":29,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":40,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":42,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":43,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":44,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":47,"column":0,"depth":2}},"children":[],"parent":"4vdnom6lqejdj7tre2evd8z","data":{}},"body":"
pour traitement Q-Tof waters suppression de la function 9 (lock mass) ;\nconversion sur MS convert (proteowizard\nmass detection : ms2 45/50, : synasp xs
\n
(agroscope; )
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/9salqiqyef2oo8lc726iwh5.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/9salqiqyef2oo8lc726iwh5.json
new file mode 100644
index 000000000000..10d182aafa9e
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/9salqiqyef2oo8lc726iwh5.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"9salqiqyef2oo8lc726iwh5","title":"2023-05-26","desc":"","updated":1686042168564,"created":1685105213878,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.05.26","type":"note","vault":{"fsPath":"vault"},"contentHash":"06aaf6cd8802f21ef4f1e20326bbb550","links":[],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":20,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":21,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":23,"column":0,"depth":2},"quality-control-for-ms-analysis":{"type":"header","text":"Quality control for MS analysis","value":"quality-control-for-ms-analysis","line":25,"column":0,"depth":2},"protocol-":{"type":"header","text":"Protocol :","value":"protocol-","line":28,"column":0,"depth":3},"paused":{"type":"header","text":"Paused","value":"paused","line":33,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":35,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":37,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":39,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":41,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":42,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":43,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":46,"column":0,"depth":2}},"children":[],"parent":"tvdn3jw4nqebyf7hozvvddb","data":{}},"body":"
To monitor changes in analyses over time, we would like to set up a control system. 5 plantes were selected (dbgi_001028; dbgi_001029; dbgi_001030; dbgi_001031; dbgi_001032)
\n
Protocol :
\n
\n
5 g of grinded plant (with a motar) is extracted in 250 mL of methanol 100% using ultrasound bath during 30 minutes.
\n
The mixture is filtered on paper filter
\n
The supernatant is transfered in tared balloon and evorapoted to dryness using a rotary evaporator
\n
The dry extract is then solubilized at 5 mg/mL using methanol and aliquotate and conserved in the freezer. 100 vials of 800 µL are realised per plant.
\n
\n
Paused
\n
Done
\n
Notes
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/9yzroel6pl06l5iwkiwf7ke.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/9yzroel6pl06l5iwkiwf7ke.json
new file mode 100644
index 000000000000..5857a8bb5792
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/9yzroel6pl06l5iwkiwf7ke.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"9yzroel6pl06l5iwkiwf7ke","title":"Program","desc":"","updated":1678011572350,"created":1678011506049,"custom":{},"fname":"workshops.2023.03.14.program","type":"note","vault":{"fsPath":"vault"},"contentHash":"9913ba10bc2eb473ad3f22e81bbcc09e","links":[],"anchors":{"openbis-get-started-workshop":{"type":"header","text":"OpenBIS get started workshop","value":"openbis-get-started-workshop","line":8,"column":0,"depth":1}},"children":[],"parent":"c3uqk0hefu9ap5nbvtpnd1l","data":{}},"body":"
Program
\n
OpenBIS get started workshop
\n
From 14:00 till 17:00\nOnline
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/a015teif7qbiq5vaqnkvm7x.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/a015teif7qbiq5vaqnkvm7x.json
new file mode 100644
index 000000000000..a3bed069a218
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/a015teif7qbiq5vaqnkvm7x.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"a015teif7qbiq5vaqnkvm7x","title":"2022-02-22","desc":"","updated":1655027552122,"created":1645516847082,"traitIds":["journalNote"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2022.02.22","type":"note","vault":{"fsPath":"vault"},"contentHash":"edd31d9fbb3fa87fe190e3d23588a4fb","links":[],"anchors":{"starting-the-day":{"type":"header","text":"Starting the day","value":"starting-the-day","line":11,"column":0,"depth":2},"todays-todo":{"type":"header","text":"Today's Todo","value":"todays-todo","line":15,"column":0,"depth":3},"today-notes--ideas":{"type":"header","text":"Today Notes & ideas","value":"today-notes--ideas","line":21,"column":0,"depth":3},"ending-the-day":{"type":"header","text":"Ending the day","value":"ending-the-day","line":28,"column":0,"depth":2},"future-todo":{"type":"header","text":"Future Todo","value":"future-todo","line":30,"column":0,"depth":3}},"children":[],"parent":"wgc5uzvwqoxzgfws17ihtpn","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/a3zxiteas91zfv3dh3vevei.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/a3zxiteas91zfv3dh3vevei.json
new file mode 100644
index 000000000000..c19bd4959da4
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/a3zxiteas91zfv3dh3vevei.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"tuto.dendron","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345549,"created":1695629345549,"id":"a3zxiteas91zfv3dh3vevei","desc":"","links":[],"anchors":{},"children":["e0h3g27inv5xahnw011o1vh","fc0kpl0jlrs3fhefs4sj0p5"],"parent":"hiqtw79lwjeom9jxybqyyff","data":{},"title":"Dendron"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/a4ngr68s9ad0hxptzdp28uq.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/a4ngr68s9ad0hxptzdp28uq.json
new file mode 100644
index 000000000000..c8df41dc31d3
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/a4ngr68s9ad0hxptzdp28uq.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"a4ngr68s9ad0hxptzdp28uq","title":"Bachelor Work 2022","desc":"","updated":1656087722665,"created":1656059640205,"custom":{},"fname":"Bachelor-Work-2022","type":"note","vault":{"fsPath":"vault"},"contentHash":"3eadf9cec9ee2f8e07b91212c4565544","links":[{"from":{"fname":"open-notebook.dbgi.alecabec.2023.05.10","id":"fzcxvbu7h0hdan74cetvee2","vaultName":"vault"},"type":"backlink","position":{"start":{"line":42,"column":51,"offset":1007},"end":{"line":42,"column":73,"offset":1029},"indent":[]},"value":"Bachelor-Work-2022"},{"from":{"fname":"open-notebook.dbgi.alecabec.2023.05.11","id":"qlb4frklnbw6ijvsr17f9go","vaultName":"vault"},"type":"backlink","position":{"start":{"line":35,"column":51,"offset":697},"end":{"line":35,"column":73,"offset":719},"indent":[]},"value":"Bachelor-Work-2022"},{"from":{"fname":"open-notebook.dbgi.alecabec.2023.05.12","id":"7tkcxc8tg11jeuax6k1aqc4","vaultName":"vault"},"type":"backlink","position":{"start":{"line":35,"column":51,"offset":800},"end":{"line":35,"column":73,"offset":822},"indent":[]},"value":"Bachelor-Work-2022"}],"anchors":{},"children":["fbjuw03jyx32jlngvja1lu7","gl88i1vw2085ztpwx77dwtp","mpboa8wpvhpygf5fw4o9v11"],"parent":"txkHnVTI9AawnquiublXO","data":{}},"body":"
Bachelor Work 2022
\n
This Bachelor project is the first pilot of the Digital Botanical Gardens Initiative. It had for objective to test different processes to further select the final protocol for the main DBGI project.
\n
More precisely, we have established and tested a sampling method, a location technic and a manner to link a maximum of informations about the plants to their samples. Moreover, we have tested two different sampling and storing technics (silica gel vs liquid Nitrogen) to compare their molecular conservation. Of course, the different processes cited and explained in this work will not necessary be used in the main project, and could change over time.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/a5kkaerc0hnrythxp6qqqaf.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/a5kkaerc0hnrythxp6qqqaf.json
new file mode 100644
index 000000000000..8f9af4642677
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/a5kkaerc0hnrythxp6qqqaf.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"a5kkaerc0hnrythxp6qqqaf","title":"Lschwegler","desc":"","updated":1677159314656,"created":1677159213328,"custom":{},"fname":"templates.open-notebook.dbgi.lschwegler","type":"note","vault":{"fsPath":"vault"},"contentHash":"b18d1a5cf758dddd42ea76317e7f93fb","links":[],"anchors":{"this-is-lenditas-dbgi-daily-open-notebook":{"type":"header","text":"This is Lendita's DBGI daily open-notebook.","value":"this-is-lenditas-dbgi-daily-open-notebook","line":8,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":12,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":14,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":16,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":17,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":19,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":21,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":23,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":25,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":27,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":29,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":30,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":31,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":34,"column":0,"depth":2}},"children":[],"parent":"b51e1k7qbe6jj1quhxnag04","data":{}},"body":"
Lschwegler
\n
This is Lendita's DBGI daily open-notebook.
\n
Today is {{ CURRENT_YEAR }}.{{ CURRENT_MONTH }}.{{ CURRENT_DAY }}
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/a5wq6ip2uxy0sqtues0d39q.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/a5wq6ip2uxy0sqtues0d39q.json
new file mode 100644
index 000000000000..bfe5338d65f9
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/a5wq6ip2uxy0sqtues0d39q.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"a5wq6ip2uxy0sqtues0d39q","title":"2023-09-06","desc":"","updated":1694015076352,"created":1694013293697,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.09.06","type":"note","vault":{"fsPath":"vault"},"contentHash":"53439d6b6caea9666df504bb58c0863d","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":24,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":26,"column":0,"depth":2},"chat-with-deborah":{"type":"header","text":"Chat with Deborah","value":"chat-with-deborah","line":28,"column":0,"depth":3},"notes":{"type":"header","text":"Notes","value":"notes","line":42,"column":0,"depth":2},"todo-tomorrow-one-day--or-never":{"type":"header","text":"Todo tomorrow, one day ... or never","value":"todo-tomorrow-one-day--or-never","line":44,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":46,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":47,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":48,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":51,"column":0,"depth":2}},"children":[],"parent":"3gtlbi2k7w3yr100owwky6q","data":{}},"body":"
Update on what has been done for the detection of chemical entities from pdf.\nTwo novels annotation sources have been been used for this iteration (PubChem + LOTUS (obtained from lotus.naturalproducts.net))
Use of the RO https://www.ebi.ac.uk/ols/ontologies/ro (relation ontology) to detected biotic interaction.\nSuch a vocabulary could also be reused and extended for chemical / organisms relatiosnships
\n
Notes
\n
Todo tomorrow, one day ... or never
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/a8dn6e97qtmq2fpdql1q3mp.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/a8dn6e97qtmq2fpdql1q3mp.json
new file mode 100644
index 000000000000..de0e36aaa8e0
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/a8dn6e97qtmq2fpdql1q3mp.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"a8dn6e97qtmq2fpdql1q3mp","title":"Wp4","desc":"","updated":1677088347050,"created":1676137649086,"custom":{},"fname":"meetings.2023.02.22.program.notes.wp4","type":"note","vault":{"fsPath":"vault"},"contentHash":"13ab12fe44217f243802ea9917d1a928","links":[{"from":{"fname":"meetings.2023.02.22.program","id":"33r62tekbrtckkfadan4kwj","vaultName":"vault"},"type":"backlink","position":{"start":{"line":87,"column":1,"offset":2654},"end":{"line":87,"column":43,"offset":2696},"indent":[]},"value":"meetings.2023.02.22.program.notes.wp4"},{"from":{"fname":"meetings.2023.02.22.program.notes.wp3","id":"c40aj2zry2u1082ouweo1n4","vaultName":"vault"},"type":"backlink","position":{"start":{"line":36,"column":81,"offset":771},"end":{"line":36,"column":167,"offset":857},"indent":[]},"value":"meetings.2023.02.22.program.notes.wp4"}],"anchors":{"what-do-we-have-":{"type":"header","text":"What do we have ?","value":"what-do-we-have-","line":10,"column":0,"depth":3},"what-do-we-want-":{"type":"header","text":"What do we want ?","value":"what-do-we-want-","line":16,"column":0,"depth":3},"hacking-scholia-for-custom-sparql-endpoints":{"type":"header","text":"Hacking Scholia for custom SPARQL endpoints","value":"hacking-scholia-for-custom-sparql-endpoints","line":22,"column":0,"depth":5}},"children":[],"parent":"9676i362aou4xnjhjczonjx","data":{}},"body":"
An intuitive, easy to use, data access platform allowing domain experts to explore the available data.
\n
See Scholia proposal at the SWAT4HCLS hackaton by Egon
\n
Hacking Scholia for custom SPARQL endpoints
\n
https://github.com/SWAT4HCLS/Biohackathon-SWAT4HCLS-2023/issues/4\nThis hack project is following up efforts of other to repurpose the Scholia platform for other SPARQL endpoints, like custom Wikibase installations or Wikidata subsets. In this project we will explore how we can make the Scholia code base configurable for the aspects to show, and which panels to show.\nIf the project is successful, we have a custom Scholia instance around any of the existing public SPARQL endpoints (e.g. ChEMBL, UniProt/NextProt, etc).
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/a9fiyj2ozc1kze7k38sjo8v.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/a9fiyj2ozc1kze7k38sjo8v.json
new file mode 100644
index 000000000000..b1b97c026745
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/a9fiyj2ozc1kze7k38sjo8v.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"a9fiyj2ozc1kze7k38sjo8v","title":"2023-08-31","desc":"","updated":1693488122154,"created":1693468373149,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.08.31","type":"note","vault":{"fsPath":"vault"},"contentHash":"1fa3574cb8c6d5d00ba9fa88b8c81853","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":27,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":29,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":31,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":66,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":68,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":69,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":70,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":73,"column":0,"depth":2}},"children":[],"parent":"9gjxhmy8g78ehub7udeszxy","data":{}},"body":"
Object in a entity or thing in your programming\nEx. single perosn
\n
properties name, age, adress\nbehaviors walk, talk and breath
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/aalkz4u5xmrhcr781vlxge3.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/aalkz4u5xmrhcr781vlxge3.json
new file mode 100644
index 000000000000..1bab83f1def3
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/aalkz4u5xmrhcr781vlxge3.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"aalkz4u5xmrhcr781vlxge3","title":"_f","desc":"","updated":1656059639672,"created":1656059639672,"isDir":false,"custom":{"isDir":false},"fname":"biblio._f","type":"note","vault":{"fsPath":"vault"},"contentHash":"a386ca5bb5106a63bcde4fd6400f705b","links":[{"type":"wiki","from":{"fname":"biblio._f","id":"aalkz4u5xmrhcr781vlxge3","vaultName":"vault"},"value":"webpage","position":{"start":{"line":5,"column":14,"offset":54},"end":{"line":5,"column":25,"offset":65},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"webpage"}},{"type":"wiki","from":{"fname":"biblio._f","id":"aalkz4u5xmrhcr781vlxge3","vaultName":"vault"},"value":"2022-06-24","position":{"start":{"line":6,"column":15,"offset":80},"end":{"line":6,"column":29,"offset":94},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-06-24"}},{"type":"wiki","from":{"fname":"biblio._f","id":"aalkz4u5xmrhcr781vlxge3","vaultName":"vault"},"value":"inaturalist","position":{"start":{"line":9,"column":11,"offset":236},"end":{"line":9,"column":26,"offset":251},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"inaturalist"}},{"type":"wiki","from":{"fname":"biblio._f","id":"aalkz4u5xmrhcr781vlxge3","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":10,"column":3,"offset":254},"end":{"line":10,"column":10,"offset":261},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio._f","id":"aalkz4u5xmrhcr781vlxge3","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":10,"column":12,"offset":263},"end":{"line":10,"column":29,"offset":280},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio._f","id":"aalkz4u5xmrhcr781vlxge3","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":10,"column":31,"offset":282},"end":{"line":10,"column":41,"offset":292},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}},{"from":{"fname":"Bachelor-Work-2022.methodology.inaturalist","id":"ssi87anaiik1o7joqf7mvdp","vaultName":"vault"},"type":"backlink","position":{"start":{"line":1,"column":127,"offset":126},"end":{"line":1,"column":140,"offset":139},"indent":[]},"value":"biblio._f"}],"anchors":{"what-is-it--inaturalist":{"type":"header","text":"What is it · iNaturalist","value":"what-is-it--inaturalist","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":20,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/aekrrxb8bzhzb2kce0virw4.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/aekrrxb8bzhzb2kce0virw4.json
new file mode 100644
index 000000000000..2b12e2191036
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/aekrrxb8bzhzb2kce0virw4.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"aekrrxb8bzhzb2kce0virw4","title":"2023-06-20","desc":"","updated":1689767209074,"created":1687263605737,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.06.20","type":"note","vault":{"fsPath":"vault"},"contentHash":"dd028f67e0c0ff5d29b05f63176ad37e","links":[],"anchors":{"this-is-audreys-dbgi-report":{"type":"header","text":"This is Audrey's DBGI report","value":"this-is-audreys-dbgi-report","line":11,"column":0,"depth":1},"context-of-the-internship":{"type":"header","text":"Context of the internship","value":"context-of-the-internship","line":13,"column":0,"depth":2},"methodology":{"type":"header","text":"Methodology","value":"methodology","line":21,"column":0,"depth":2},"collaborative-tools":{"type":"header","text":"Collaborative tools","value":"collaborative-tools","line":23,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":42,"column":0,"depth":2},"-1":{"type":"header","text":"","value":"-1","line":53,"column":0,"depth":2},"wetlab":{"type":"header","text":"Wetlab","value":"wetlab","line":59,"column":0,"depth":3},"metabolomics-datatreatment":{"type":"header","text":"Metabolomics datatreatment","value":"metabolomics-datatreatment","line":62,"column":0,"depth":3},"results":{"type":"header","text":"Results","value":"results","line":69,"column":0,"depth":2},"plant-collections":{"type":"header","text":"Plant collections","value":"plant-collections","line":71,"column":0,"depth":3},"-2":{"type":"header","text":"","value":"-2","line":76,"column":0,"depth":3}},"children":[],"parent":"4vdnom6lqejdj7tre2evd8z","data":{}},"body":"
2023-06-20
\n
This is Audrey's DBGI report
\n
Context of the internship
\n
The analytical team of the Institute of Organic and Analytical Chemistry (ICOA) of the University of Orléans is specialized in the characterization of plant extract and the determination of their bioactivity. Ornamental plants are highly produced in the Région Centre Val-de-Loire (France) being able to characterized and identify bioactive could lead to new way of valorisation of this large quantity of raw materials.
\n
To discover the potential of ornamental plant, a metabolomic study is undertaken. In this study we are interested in 3 genera of ornamental plants. The CDHRC (Comité de Développement Horticol Région Centre) produce 2 Clematis spp, 1 Lonicera sp and 1 Euonymus sp and to extend our study to several species a collaboration with the DBGI (Digital Botanical Garden Initiative) had been established.\nThe objective of this collaboration is to acquire news skills in metabolomic treatment, to access to several species of Clematis, Lonicera and Euonymus to the study and integrate this result to the DBGI dataset.
\n
Methodology
\n
Collaborative tools
\n
The DBGI is an Open Science project, this ambition had lead the contributors to set up differents tools :
\n\n
\n
Visual Studio Code : Visual Studio Code is a source-code editor that can be used with a variety of programming languages.
\n
\n
\n
Open notebook : An open daily notebook of each contributors of the project can be submitted to the DBGI dendron (http://www.dbgi.org/dendron-dbgi/).
\n
\n
\n
Git Hub : GitHub, Inc. is an Internet hosting service for software development and version control using Git. Repositories, containing documents, scripts or tutorials can be easily shared thanks to Git (https://github.com/digital-botanical-gardens-initiative)
\n
\n\n
The used of this tools had required the learning of basics skills of navigating via a control terminal
A specific workflow for the organization of the wetlab part had been set up. The workflow required the used of the following software or application : directus, Avery, Qfield and Inaturalist. The global workflow is avaibable on the link
\n
Metabolomics datatreatment
\n
A specific workflow for the datatreatment of DBGI plant had been set up. The workflow required the used of the following software, application or git : MS convert, Inaturalist, GNPS, Mzmine 2.3, Sirius, Cytoscape, Met_annot_enhancer
\n
The uses of the differents software required a higher calculation capacity than the personnal laptop used. An ssh connection had been establised between the servor and the computer in order to launch session, interfaced with Xpra, to run mzmine or sirius.\nThe global workflow of datatreatment is available here
\n
Results
\n
Plant collections
\n
DBGI collection : 16 Clematis, 16 Lonicera, and 4 Euonymus had been collected between Botanical Garden of Fribourg and Botanical Garden of Neuchatel.\nCDHRC collection : 2 Clematis, 1 Lonicera and 1_Euonymus had beed collected.
\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/at1rofti4wm05hfdlfi8vie.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/at1rofti4wm05hfdlfi8vie.json
new file mode 100644
index 000000000000..6b053d4941d2
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/at1rofti4wm05hfdlfi8vie.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"at1rofti4wm05hfdlfi8vie","title":"2023-06-13","desc":"","updated":1687274516454,"created":1686656143309,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.06.13","type":"note","vault":{"fsPath":"vault"},"contentHash":"2fe49455a42ba879adae2c02b79295dd","links":[],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"meeting-pma-":{"type":"header","text":"Meeting PMA :","value":"meeting-pma-","line":18,"column":0,"depth":3},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":32,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":35,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":36,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":38,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":40,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":42,"column":0,"depth":2},"ornamental-plant":{"type":"header","text":"Ornamental plant","value":"ornamental-plant","line":44,"column":0,"depth":3},"notes":{"type":"header","text":"Notes","value":"notes","line":59,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":61,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":68,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":69,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":70,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":73,"column":0,"depth":2}},"children":[],"parent":"4vdnom6lqejdj7tre2evd8z","data":{}},"body":"
2023-06-13
\n
This is Audrey's DBGI daily open-notebook.
\n
Today is 2023.06.13
\n
Todo today
\n
Meeting PMA :
\n
\n
\n
Extraits \"controles\" OK (à conserver à -80°C 500 vials + 5 flacons)
clean la table de metadata (ajout bk) + relancer un gnps +
\n
clean architecture des dos.
\n
faire export doc sirius puis revoir pour les script (biostat)
\n\n
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/ayiiu4mlsoppocmondmfe6p.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/ayiiu4mlsoppocmondmfe6p.json
new file mode 100644
index 000000000000..21dc88ac69f5
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/ayiiu4mlsoppocmondmfe6p.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"meet","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345551,"created":1695629345551,"id":"ayiiu4mlsoppocmondmfe6p","desc":"","links":[],"anchors":{},"children":["76hu8527lw5c0i05b3epxub"],"parent":"txkHnVTI9AawnquiublXO","data":{},"title":"Meet","schema":{"schemaId":"meet","moduleId":"meet"}},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/b51e1k7qbe6jj1quhxnag04.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/b51e1k7qbe6jj1quhxnag04.json
new file mode 100644
index 000000000000..a8023d96e7e6
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/b51e1k7qbe6jj1quhxnag04.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"b51e1k7qbe6jj1quhxnag04","title":"Dbgi","desc":"","updated":1673608466305,"created":1667483368106,"custom":{},"fname":"templates.open-notebook.dbgi","type":"note","vault":{"fsPath":"vault"},"contentHash":"d754adae6f2994b173997c341f68587e","links":[],"anchors":{"this-is-my-name-dbgi-daily-open-notebook":{"type":"header","text":"This is My Name DBGI daily open-notebook.","value":"this-is-my-name-dbgi-daily-open-notebook","line":8,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":12,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":14,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":17,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":18,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":20,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":22,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":24,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":26,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":28,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":30,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":31,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":32,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":35,"column":0,"depth":2}},"children":["3p92gjvv8krrc6kjlk7rz6r","jzn6u4pja1t36gkddonsl65","0qhugwwk5i060m2fhnjj41q","vo11ivkxgc2ckam20bkkx9j","a5kkaerc0hnrythxp6qqqaf","7o1gfpiouo5e34tr0otrtb2","i8rd7wzfdabtsj18zgrzrub"],"parent":"h2fwooifcd7lzne5fojsniv","data":{}},"body":"
Dbgi
\n
This is My Name DBGI daily open-notebook.
\n
Today is {{ CURRENT_YEAR }}.{{ CURRENT_MONTH }}.{{ CURRENT_DAY }}
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/bcdutsnvngmqeo3jyevkidh.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/bcdutsnvngmqeo3jyevkidh.json
new file mode 100644
index 000000000000..2e5ba7b0928b
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/bcdutsnvngmqeo3jyevkidh.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"bcdutsnvngmqeo3jyevkidh","title":"2023-05-08","desc":"","updated":1683527203848,"created":1683525732642,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.05.08","type":"note","vault":{"fsPath":"vault"},"contentHash":"c1a48c6bd2ba5c03966655c17254e08e","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":25,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":45,"column":0,"depth":2}},"children":[],"parent":"kpf9zs71io037d9pc13w2ky","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/bjbdnlx9t9rmqt5uw39flf2.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/bjbdnlx9t9rmqt5uw39flf2.json
new file mode 100644
index 000000000000..e6298c13c68f
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/bjbdnlx9t9rmqt5uw39flf2.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"bjbdnlx9t9rmqt5uw39flf2","title":"Wrap Up","desc":"","updated":1677225166093,"created":1677221264363,"custom":{},"fname":"meetings.2023.02.22.wrap-up","type":"note","vault":{"fsPath":"vault"},"contentHash":"4303690aed3a0fb013738c2de4a954ac","links":[{"type":"wiki","from":{"fname":"meetings.2023.02.22.wrap-up","id":"bjbdnlx9t9rmqt5uw39flf2","vaultName":"vault"},"value":"meetings.2023.02.22.program","position":{"start":{"line":35,"column":1,"offset":546},"end":{"line":35,"column":32,"offset":577},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"meetings.2023.02.22.program"}},{"type":"wiki","from":{"fname":"meetings.2023.02.22.wrap-up","id":"bjbdnlx9t9rmqt5uw39flf2","vaultName":"vault"},"value":"meetings.2023.02.22.program","position":{"start":{"line":37,"column":76,"offset":654},"end":{"line":37,"column":107,"offset":685},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"meetings.2023.02.22.program"}},{"from":{"fname":"ressources.zulip","id":"j3jsdxtx10sz97uy306240h","vaultName":"vault"},"type":"backlink","position":{"start":{"line":15,"column":1,"offset":321},"end":{"line":15,"column":53,"offset":373},"indent":[]},"value":"meetings.2023.02.22.wrap-up"}],"anchors":{"what-is-this-note-":{"type":"header","text":"What is this note ?","value":"what-is-this-note-","line":9,"column":0,"depth":1},"who-was-there-":{"type":"header","text":"Who was there ?","value":"who-was-there-","line":13,"column":0,"depth":1},"physical":{"type":"header","text":"Physical","value":"physical","line":15,"column":0,"depth":2},"remote":{"type":"header","text":"Remote","value":"remote","line":32,"column":0,"depth":2},"program-followed":{"type":"header","text":"Program followed","value":"program-followed","line":39,"column":0,"depth":1},"resume":{"type":"header","text":"Resume","value":"resume","line":45,"column":0,"depth":1},"the-origins-the-alignment-with-the-bigger-emi-and-what-has-been-done-for-now":{"type":"header","text":"The origins, the alignment with the bigger EMI and what has been done for now","value":"the-origins-the-alignment-with-the-bigger-emi-and-what-has-been-done-for-now","line":47,"column":0,"depth":2},"roles-and-actors":{"type":"header","text":"Roles and actors","value":"roles-and-actors","line":56,"column":0,"depth":2},"roles-of-scientific-advisors":{"type":"header","text":"Roles of scientific advisors","value":"roles-of-scientific-advisors","line":58,"column":0,"depth":3},"roles-of-dbgi-km-team":{"type":"header","text":"Roles of DBGI-KM team","value":"roles-of-dbgi-km-team","line":68,"column":0,"depth":3},"communication-means":{"type":"header","text":"Communication means","value":"communication-means","line":84,"column":0,"depth":2},"next-steps":{"type":"header","text":"Next steps","value":"next-steps","line":99,"column":0,"depth":2},"upcoming-workshops":{"type":"header","text":"Upcoming workshops","value":"upcoming-workshops","line":102,"column":0,"depth":3},"openbis-workshop":{"type":"header","text":"openBIS workshop","value":"openbis-workshop","line":108,"column":0,"depth":4},"wikibase-workshop":{"type":"header","text":"Wikibase workshop","value":"wikibase-workshop","line":113,"column":0,"depth":4},"focussed-workgroup":{"type":"header","text":"Focussed workgroup","value":"focussed-workgroup","line":116,"column":0,"depth":3}},"children":[],"parent":"29snrplphmlppuhnz6bclo6","data":{}},"body":"
Wrap Up
\n
What is this note ?
\n
This is a quick wrap-up of the first DBGI meeting held Wednesday 22 February 2023.
More details and notes can be find under the corresponding sections of the Program.
\n
Resume
\n
The origins, the alignment with the bigger EMI and what has been done for now
\n
Are the points which were discussed in the morning.
\n
\n
Historical background (presented by Manu, slides at )
\n
DBGI main structure and EMI longer term vision (presented by PM, slides at )
\n
DBGI field and wet lab advances (presented by Edouard, slides at )
\n
DBGI data management pilot (shared by Maëlle, slides at )
\n
\n
Roles and actors
\n
Roles of scientific advisors
\n
\n
Explained and resumed in the previous screenshot (original pdf at ))
\n
They will all be poked and asked for advice as much as needed (they will tell us if no time to help or if too frequently contacted). All are of course more than welcome to imply themselves more according to their interest (e.g. Daniel will possibly lead a Wikibase workshop in March)
\n
🗒️ note that the dotted links correspond to the main area where advisors are expected to help, they can of course be extended. E.g Jakub can help on the visualization and interfacing with the KG, Daniel and Egon are of course knowledgeable on semantic data aspects.
\n
Roles of DBGI-KM team
\n
\n
Roles and actors have been clarified see previous screenshot (original pdf at ).
\n
WP2 Sample tracking system establishment Henry and Caterina will be our contact persons in this project for the openBIS and sample tracking system establishment. However there will be a wider team of data scientists and dev implied (who will be funded by the Swiss DBGI-KM ORD grant). Bernd will coordinate this on the ETH side.
\n
WP3 Knowledge representation and graph establishment Ana and Tarcisio will be two contact persons AND effectively two actors here. They will be funded by the Swiss DBGI-KM ORD grant.
\n
Both for the WP2 and WP3 teams, it is OK to have an \"official start\" on the 1st March 2023, wether or not the money has been liberated from the swissuniversities.
\n
It was announced that Tomas Walker (UniNe) will be contracted as postdoc, starting June 2023 under Manu's supervision, for the WP5 Community Engagement, Public Outreach and Biodiversity Conservation part. We mentioned that we should look for a candidate for WP4 Human Data Interaction. Postdocs roles were not discussed in details.
\n
Communication means
\n
The multiple communications means in the DBGI were summarized in the following screen shot (original pdf at ).
🗒️ The Dendron workshop did not happen. Will be rescheduled.
\n
Next steps
\n
Upcoming workshops
\n
This meeting was important to get thing rolling. The program was a bit overambitious and we couldn't address all points.\nWe are setting up several upcoming workshops which will be more focussed in their thematic.\nAnyone is welcome to join them.
\n
openBIS workshop
\n
(Henry, Caterina)\nDuring March
\n
Wikibase workshop
\n
(Daniel) In CH end of March 29-30 possibly few days earlier maybe in person.
\n
Focussed workgroup
\n
A small working group will be set up to better understand the legal and ethics aspects of sample collection.\nWith the EMI in mind but also for the DBGI.
\n
Anne-Laure will coordinate this on JBN side.\nDaniel is interested in ethics aspects and will possibly participate.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/bo108ix90a9ywbkbgtghxym.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/bo108ix90a9ywbkbgtghxym.json
new file mode 100644
index 000000000000..bec9992d90c5
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/bo108ix90a9ywbkbgtghxym.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"bo108ix90a9ywbkbgtghxym","title":"2023-03-02","desc":"","updated":1677767987958,"created":1677751531728,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.03.02","type":"note","vault":{"fsPath":"vault"},"contentHash":"faaac9e1fe852d22b0b66c8fca7fc9c7","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"point-maëlle":{"type":"header","text":"Point Maëlle","value":"point-maëlle","line":24,"column":0,"depth":3},"meeting-p-ruch":{"type":"header","text":"Meeting P Ruch","value":"meeting-p-ruch","line":37,"column":0,"depth":3},"paused":{"type":"header","text":"Paused","value":"paused","line":56,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":58,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":60,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":62,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":64,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":65,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":66,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":69,"column":0,"depth":2}},"children":[],"parent":"20mx26zgvnr7cc5nucidveu","data":{}},"body":"
Three undescribed germacranolide sesquiterpene lactones, named macrocephalides A-C, along with known steroids, triterpenes and flavonoids were isolated from the aerial parts of Campuloclinium macrocephalum.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/bo72d7rnxqqbuce3tgztgsx.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/bo72d7rnxqqbuce3tgztgsx.json
new file mode 100644
index 000000000000..f2f49e9f0b89
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/bo72d7rnxqqbuce3tgztgsx.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"bo72d7rnxqqbuce3tgztgsx","title":"program","desc":"","updated":1688887082919,"created":1688887082919,"custom":{},"fname":"BiCICKL-project.nanopublications.workshops.2023.07.10.program","type":"note","vault":{"fsPath":"vault"},"contentHash":"aef127d20f26e90cbd99d7b349aa03ba","links":[],"anchors":{},"children":[],"parent":"y4st25fb5m6zr3lymwti67f","data":{}},"body":"
program
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/bou894env5gm1043gz2i06y.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/bou894env5gm1043gz2i06y.json
new file mode 100644
index 000000000000..89631bc5211c
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/bou894env5gm1043gz2i06y.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"bou894env5gm1043gz2i06y","title":"2022-11-11","desc":"","updated":1668184033758,"created":1668152843931,"traitIds":["open-notebook-eb"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2022.11.11","type":"note","vault":{"fsPath":"vault"},"contentHash":"d29504439873b0d3a0efc7aef0d8d5cb","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":18,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":20,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":38,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":40,"column":0,"depth":1}},"children":[],"parent":"f5s4h26cmipsm6itdloyva0","data":{}},"body":"
2022-11-11
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2022.11.11
\n
To do
\n
Today will be a boring day. I'll change all the iNaturalist DBGI codes entries frome dbgi_id to emi_external_id and from DBGI_SPL_000000 to dbgi_000000.
\n
done
\n
All is done except those ones down, that will be done when old samples will be relabeled.
\n
notes
\n
iNaturalist entries without new spl_code batch bw silica + nitro :
\n
\n
Genus Leucania (nitro + silica)
\n
Khaya senegalensis (nitro + silica)
\n
manihot esculenta (nitro)
\n
cycas circinalis (nitro + silica)
\n
brahea edulis (nitro + silica)
\n
Guaiacum officinale (nitro + silica)
\n
Cascabela thevetia (nitro)
\n
\n
iNaturalist entries without new spl_code batch bw nitro :
\n
\n
unknown (Villamilla Peruviana)
\n
unknown (Plectranthus amboinicus \"variegatus\")
\n
Combretum indicum
\n
unknown (nephelium longana)
\n
Elettaria cardamomum ( Elettaria major)
\n
\n
code
\n
links
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/bpn6phjdxlh99vx2midfrhk.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/bpn6phjdxlh99vx2midfrhk.json
new file mode 100644
index 000000000000..7f26e02f8a23
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/bpn6phjdxlh99vx2midfrhk.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"bpn6phjdxlh99vx2midfrhk","title":"2022-11-24","desc":"","updated":1669305800790,"created":1669304197258,"traitIds":["open-notebook-eb"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2022.11.24","type":"note","vault":{"fsPath":"vault"},"contentHash":"c7b1f9244d564a7913f5216d8b204332","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":16,"column":0,"depth":1},"perpectives":{"type":"header","text":"Perpectives","value":"perpectives","line":39,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":41,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":43,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":45,"column":0,"depth":1}},"children":[],"parent":"f5s4h26cmipsm6itdloyva0","data":{}},"body":"
2022-11-24
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2022.11.24
\n
To do
\n
done
\n
Discussed with Pierre-Marie about the future of the sampling. We arrived to a conlusion that it is better to use just QField on the field. It would be good to obtain pictures with all the informations we want in the metadata. With that, we could import super quickly the observations in iNaturalist without any manual operations.
\n
So to resume :
\n
5 different pictures to take with QField :
\n
\n
A picture of the panel corresponding of the species of the plant
\n
A picture of the plant in general
\n
A picture of an outstanding detail of the plant to help the identification (flowers, fruits, ...)
\n
A picture of the cutting situation (where and what we prelevate for the sampling)
\n
A picture of the species panel and the falcon with the dbgi code
\n
\n
Already available on QField :
\n
\n
plant_ID field connected to the list of the JBUF, with the possibility to add new attributes if not available on that list
\n
spl_code field with a shape constraint and a unique constraint, with the possibility to scan a QR code to optimize and accelerate the process
\n
Panel field, General field, Detail field, Cut field and Panel+Label field for respectively the 5 pictures cited above. These fields permit to rename the pictures like this : Physalis Peruviana dbgi_000001 \"subject of the picture\".jpg. This can be used by iNaturalist to identify automatically the species present in the picture.
\n
x_coord and y_coord to store the location of the sampling
\n
\n
Further to do :
\n
\n
Replace the location of the photo in the metadata with location of QField then iNaturalist takes the good coordinates for the plant location
\n
Find a way to store somewhere in the metadata of the picture the dbgi code to stop adding it by hand during or after the import
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/bu0nndv79i0j85ewpg66wmu.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/bu0nndv79i0j85ewpg66wmu.json
new file mode 100644
index 000000000000..5b48f316358d
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/bu0nndv79i0j85ewpg66wmu.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"bu0nndv79i0j85ewpg66wmu","title":"2023-03-17","desc":"","updated":1679048108728,"created":1679044375359,"traitIds":["open-notebook-ebruelhart"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2023.03.17","type":"note","vault":{"fsPath":"vault"},"contentHash":"85580e359d14ca0b74bc0829229c256c","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1}},"children":[],"parent":"g680xu048qanry10ggwpyth","data":{}},"body":"
2023-03-17
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2023.03.17
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/bum7d9d6lnc0a863iqaogka.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/bum7d9d6lnc0a863iqaogka.json
new file mode 100644
index 000000000000..a766e25499d6
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/bum7d9d6lnc0a863iqaogka.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"bum7d9d6lnc0a863iqaogka","title":"Buffer Dbgi","desc":"","updated":1655875954705,"created":1645443184300,"custom":{},"fname":"buffer-dbgi","type":"note","vault":{"fsPath":"vault"},"contentHash":"00cffbec3cc59eea81938e96af47b3fd","links":[{"type":"wiki","from":{"fname":"buffer-dbgi","id":"bum7d9d6lnc0a863iqaogka","vaultName":"vault"},"value":"biblio.open-science","alias":"testososo","position":{"start":{"line":74,"column":1,"offset":1965},"end":{"line":74,"column":34,"offset":1998},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"biblio.open-science"}},{"type":"wiki","from":{"fname":"buffer-dbgi","id":"bum7d9d6lnc0a863iqaogka","vaultName":"vault"},"value":"foo","alias":"Foo Note","position":{"start":{"line":76,"column":1,"offset":2000},"end":{"line":76,"column":33,"offset":2032},"indent":[]},"xvault":true,"sameFile":false,"to":{"fname":"foo","vaultName":"vault"}},{"type":"wiki","from":{"fname":"buffer-dbgi","id":"bum7d9d6lnc0a863iqaogka","vaultName":"vault"},"value":"biblio.open-tree-of-life-synthetic-tree","alias":"zup","position":{"start":{"line":78,"column":1,"offset":2034},"end":{"line":78,"column":48,"offset":2081},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"biblio.open-tree-of-life-synthetic-tree"}},{"type":"wiki","from":{"fname":"buffer-dbgi","id":"bum7d9d6lnc0a863iqaogka","vaultName":"vault"},"value":"biblio.phylesystem-a-git-based-data-store-for-community-curated-phylogenetic-estimates-fig--1-","alias":"Phylesystem","position":{"start":{"line":81,"column":1,"offset":2084},"end":{"line":81,"column":111,"offset":2194},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"biblio.phylesystem-a-git-based-data-store-for-community-curated-phylogenetic-estimates-fig--1-"}}],"anchors":{"what-is-this-page":{"type":"header","text":"What is this page","value":"what-is-this-page","line":9,"column":0,"depth":1},"buffer":{"type":"header","text":"Buffer","value":"buffer","line":20,"column":0,"depth":1}},"children":[],"parent":"txkHnVTI9AawnquiublXO","data":{}},"body":"
Buffer Dbgi
\n
What is this page
\n
This page is a buffer note. Consiuder it as a scrapbook allowing toi copy / paste and share info that do not necessarily fit in a category / or that will not be kept on the long term.
\n
Ideally the buffer is filled from the top (older entries at the bottom)
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/bwu3bavs2hymd3x55ikezub.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/bwu3bavs2hymd3x55ikezub.json
new file mode 100644
index 000000000000..74ae3ec830a5
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/bwu3bavs2hymd3x55ikezub.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"bwu3bavs2hymd3x55ikezub","title":"17","desc":"","updated":1690284260848,"created":1689672762964,"custom":{},"fname":"open-notebook.dbgi.lcappelletti.2023.07.18","type":"note","vault":{"fsPath":"vault"},"contentHash":"add206e6c908c83bbcf0f51b9808417f","links":[],"anchors":{"this-is-luca-cappellettis-dbgi-daily-open-notebook":{"type":"header","text":"This is Luca Cappelletti's DBGI daily open-notebook.","value":"this-is-luca-cappellettis-dbgi-daily-open-notebook","line":8,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":12,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":15,"column":0,"depth":2},"on-biolink":{"type":"header","text":"On Biolink","value":"on-biolink","line":17,"column":0,"depth":3},"why-having-a-hierarchy-for-the-earth-metabolome-kgs-node--edge-labels-is-important":{"type":"header","text":"Why having a hierarchy for the Earth Metabolome KG's node & edge labels is important","value":"why-having-a-hierarchy-for-the-earth-metabolome-kgs-node--edge-labels-is-important","line":30,"column":0,"depth":3},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":33,"column":0,"depth":2}},"children":[],"parent":"sef56d6u8k6dnm61naamfmz","data":{}},"body":"
17
\n
This is Luca Cappelletti's DBGI daily open-notebook.
\n
Today is 2023.07.18
\n
Todo today
\n
\n
Verify whether BioLink comes with the support of biological samples.
\n
\n
Done
\n
On Biolink
\n
Deepak Unni, who is the main author of BioLink, said the following regarding the support of BioLink for biological samples:
\n
\n
Biolink Model does have a few concepts that can be used to represent information about samples. But I don't think it is sufficiently modelled to support processing of samples as it is done for genomic sequencing or single cell sequencing. Ideally, it would be good to explore how the model can be extended to support this knowledge.
\n
\n
Deepak also pointed me to the following resources:
\n
\n
NMDC: The NMDC is a multi-organizational effort to integrate microbiome data across diverse areas in medicine, agriculture, bioenergy, and the environment. This integrated platform facilitates comprehensive discovery of and access to multidisciplinary microbiome data in order to unlock new possibilities with microbiome data science.
Why having a hierarchy for the Earth Metabolome KG's node & edge labels is important
\n
The BioLink comes equipped with two important features that are oftem under appreciated: the textual description associated to the node and edge labels, and the hierarchy of the node and edge labels. We can create node type and edge type features from the textual features using procedures such as Okapi BM25-weighted BERT and by composing the BioLink hyerarchy into a KG we can use any node embedding model to get additional topological node type and edge type features. These features can be used for many tasks, such as the classification of the nodes and edges, and the prediction of the edges. The BioLink hierarchy is not perfect, but it provides several good inspirations that should be followed for the Earth Metabolome KG.
\n
Todo tomorrow
\n
\n
Delve into whether the data models suggested by Chris Mungall are a viable solution for the characterization of biological samples.
\n
Start to delve into the ENPKG Workflow so as to plan a holystic refactoring, if needed.
\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/c3uqk0hefu9ap5nbvtpnd1l.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/c3uqk0hefu9ap5nbvtpnd1l.json
new file mode 100644
index 000000000000..5489c276a895
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/c3uqk0hefu9ap5nbvtpnd1l.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"workshops.2023.03.14","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345554,"created":1695629345554,"id":"c3uqk0hefu9ap5nbvtpnd1l","desc":"","links":[],"anchors":{},"children":["9yzroel6pl06l5iwkiwf7ke"],"parent":"f4lffu00dnmut291yvfk5w9","data":{},"title":"14"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/c40aj2zry2u1082ouweo1n4.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/c40aj2zry2u1082ouweo1n4.json
new file mode 100644
index 000000000000..35d0517e8081
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/c40aj2zry2u1082ouweo1n4.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"c40aj2zry2u1082ouweo1n4","title":"Wp3","desc":"","updated":1677088368778,"created":1676137624960,"custom":{},"fname":"meetings.2023.02.22.program.notes.wp3","type":"note","vault":{"fsPath":"vault"},"contentHash":"6f98047fdec2fcefc39c2ca41988daac","links":[{"type":"ref","from":{"fname":"meetings.2023.02.22.program.notes.wp3","id":"c40aj2zry2u1082ouweo1n4","vaultName":"vault"},"value":"meetings.2023.02.22.program.notes.wp4","position":{"start":{"line":36,"column":81,"offset":771},"end":{"line":36,"column":167,"offset":857},"indent":[]},"xvault":false,"to":{"fname":"meetings.2023.02.22.program.notes.wp4","anchorHeader":"hacking-scholia-for-custom-sparql-endpoints"}},{"from":{"fname":"meetings.2023.02.22.program","id":"33r62tekbrtckkfadan4kwj","vaultName":"vault"},"type":"backlink","position":{"start":{"line":83,"column":1,"offset":2571},"end":{"line":83,"column":43,"offset":2613},"indent":[]},"value":"meetings.2023.02.22.program.notes.wp3"}],"anchors":{"what-do-we-have-":{"type":"header","text":"What do we have ?","value":"what-do-we-have-","line":11,"column":0,"depth":3},"what-do-we-want-":{"type":"header","text":"What do we want ?","value":"what-do-we-want-","line":23,"column":0,"depth":3}},"children":[],"parent":"9676i362aou4xnjhjczonjx","data":{}},"body":"
Wp3
\n
Ana, Tarcisio, Christophe, Daniel (can't be there due to teaching duties), Egon, Jakub, Philippe
https://github.com/SWAT4HCLS/Biohackathon-SWAT4HCLS-2023/issues/4\nThis hack project is following up efforts of other to repurpose the Scholia platform for other SPARQL endpoints, like custom Wikibase installations or Wikidata subsets. In this project we will explore how we can make the Scholia code base configurable for the aspects to show, and which panels to show.\nIf the project is successful, we have a custom Scholia instance around any of the existing public SPARQL endpoints (e.g. ChEMBL, UniProt/NextProt, etc).
\n
\n
Daniel runs his own instance Wikibase instance.
\n
Downside : additional efforts to set up \nWhy not do it on WD directly ?
\n
WD doesn't want specimens informations.\nWe have data at higher granularity.\nSeveral ways to test this https://www.wikibase.cloud/\nNeed a Wikimedia account
\n
Will set up a small meeting with Daniel.
\n
(PMA) I just signed up for a wikibase.cloud account. They are apparently in closed beta for now https://www.wikibase.cloud/
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/c4hvz8539dphj9ip5vm3nhd.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/c4hvz8539dphj9ip5vm3nhd.json
new file mode 100644
index 000000000000..3598fe1e68a5
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/c4hvz8539dphj9ip5vm3nhd.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"c4hvz8539dphj9ip5vm3nhd","title":"2023-05-11","desc":"","updated":1683883099752,"created":1683789404230,"traitIds":["open-notebook-lschwegler"],"custom":{},"fname":"open-notebook.dbgi.lschwegler.2023.05.11","type":"note","vault":{"fsPath":"vault"},"contentHash":"8272466f48d3b057e7342423432470cd","links":[],"anchors":{"this-is-lenditas-dbgi-daily-open-notebook":{"type":"header","text":"This is Lendita's DBGI daily open-notebook.","value":"this-is-lenditas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":23,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":25,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":27,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":38,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":40,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":41,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":42,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":45,"column":0,"depth":2}},"children":[],"parent":"giitkp9yhfqe7cosjgh4t6h","data":{}},"body":"
Of the 12 samples that were unfortunately stored somewhere in the wrong place, 8 were totally damp and with mould. So I had to collect them again. Audrey has reserved the freeze dryer for the weekend and is taking the samples with her. So the process is delayed once again ☹.
\n
Then the other 6 samples that aren't on iNaturalist & QField app, I haven't figured out where the error is or where those are coming from either. I have also looked at the samples and have no idea. They are dried and marked with a question mark and are there now (in case something comes out). But they are not extracted etc. because it is unclear where they come from or what is wrong with them.
\n
The missing pictures for iNaturalist: that was a lot of work and cost me a lot of nerves. However, they are now on iNaturalist. Unfortunately there are still 5 plants missing and I just can't figure out which ones they are. I have 15 dbgi code that could be them but I can't find them on the QField app.
\n
This week has been kind of just ironing out problems & realising that I'm done with the collection in the succulent greenhouse but won't have the evaluations for my bachelorwork. Well, I will write and present wat i have and that is quite a lot. Now it's important for me to be able to write my Bachelorwork and finish it soon. Sometimes I'm afraid that the baby will come and I won't be able to finish it.\nI can also look at the results of the mass spectrometry after I've submitted my bachelorwork (just because I'm interested).
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/c4oha21mmkymii0skow3ktp.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/c4oha21mmkymii0skow3ktp.json
new file mode 100644
index 000000000000..3b7e9dd4242f
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/c4oha21mmkymii0skow3ktp.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"c4oha21mmkymii0skow3ktp","title":"2023-03-07","desc":"","updated":1678193515377,"created":1678173555293,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.03.07","type":"note","vault":{"fsPath":"vault"},"contentHash":"f9a5b70fadd0049eb3572123a9d53953","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":27,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":30,"column":0,"depth":2}},"children":[],"parent":"ijpbaqnc0ewvgkwl0qq0m7e","data":{}},"body":"
Worked on implementing the GNPS dashboard in our dashboard
\n
\n
TODO NEXT
\n
Important for redaction
\n
Asked help from chatgpt to create the thesis outline:
\n
I. Introduction
\n
\n
Background and motivation for the project (Presentation of DBGI / LOTUS?)
\n
Brief overview of the research problem and objectives
\n
\n
II. Literature Review
\n
\n
(Overview of the relevant literature related to plant metabolites, LCMS profiles, and knowledge graphs)
\n
Discussion of existing research on creating data dashboards and using SPARQL queries for data visualization
\n
\n
III. Methodology
\n
\n
Description of the data sources and how they were collected and processed (LOTUS + DBGI)
\n
(Details on the development of the knowledge graph and how it will be used to feed the dashboard)
\n
Discussion of the software tools and programming languages used to build the dashboard and interface with the knowledge graph and LCMS profiles
\n
\n
IV. Dashboard Development
\n
\n
Presentation of the dashboard interface and its various features and components
\n
Discussion of the key statistics and visualizations displayed on the dashboard, and how they relate to the research objectives
\n
(Examples of SPARQL queries used to extract information from the knowledge graph and visualize it on the dashboard)
\n
\n
V. Code Optimization
\n
\n
Discussion of how the code was optimized for efficiency and speed
\n
Overview of the methods and techniques used to improve code performance, such as caching, parallelization, and algorithmic improvements
\n
Presentation of performance benchmarks and comparisons to demonstrate the improvements achieved
\n
\n
VI. Discussion
\n
\n
Interpretation of the results and their implications for plant metabolite research and data visualization
\n
Comparison of the proposed dashboard to existing tools and methods
\n
Limitations of the study and potential avenues for future research
\n
\n
VII. Conclusion
\n
\n
Summary of the key findings and contributions of the thesis
\n
Implications for the field of plant metabolite research and data visualization
\n
Suggestions for future research
\n
\n
VIII. References
\n
\n
List of all references cited in the thesis
\n
\n
IX. Appendices
\n
\n
Additional technical details on the development of the dashboard and knowledge graph, as well as sample SPARQL queries and LCMS profiles used in the study
\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/c6a43vkelhov72igdp303gu.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/c6a43vkelhov72igdp303gu.json
new file mode 100644
index 000000000000..8d501ff9a254
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/c6a43vkelhov72igdp303gu.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"c6a43vkelhov72igdp303gu","title":"2022-11-17","desc":"","updated":1669735058815,"created":1668670965639,"traitIds":["open-notebook-mw"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2022.11.17","type":"note","vault":{"fsPath":"vault"},"contentHash":"93ca6720deb8add42fc608c02bd83edd","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":15,"column":0,"depth":2},"if-everything-done-before-end-of-day":{"type":"header","text":"If everything done before end of day","value":"if-everything-done-before-end-of-day","line":21,"column":0,"depth":3},"code":{"type":"header","text":"CODE","value":"code","line":24,"column":0,"depth":2},"resolve-cronjob-problem":{"type":"header","text":"Resolve cronjob problem","value":"resolve-cronjob-problem","line":26,"column":0,"depth":3},"pswd-in-cronjob":{"type":"header","text":"Pswd in cronjob","value":"pswd-in-cronjob","line":47,"column":0,"depth":3},"show-images-from-url-on-directus":{"type":"header","text":"Show images from url on directus","value":"show-images-from-url-on-directus","line":51,"column":0,"depth":3},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":56,"column":0,"depth":2}},"children":[],"parent":"2n9ssq0hbel5s1n7o4aiqhl","data":{}},"body":"
2022-11-17
\n
This is Maëlle's DBGI daily open-notebook.
\n
Today is 2022.11.17
\n
TODO
\n
\n
Show images from url on directus
\n
Resolve cronjob problem (update db)
\n
[?] Pswd in cronjob
\n
\n
If everything done before end of day
\n
\n
go on with the tutorial
\n
\n
CODE
\n
Resolve cronjob problem
\n
Problem => python file couldn't execute because the environment wasn't activated
\n
Solved by creating a bash script that activate the environment and run the script next
Problem => pswd visible in cronjob\nBut still only on local (just like .env file) so is it really a problem?
\n
Show images from url on directus
\n
Install extension?
\n
I couldn't find a solution today
\n
TODO NEXT
\n
\n
Show images from url on directus
\n
go on with the tutorial
\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/cbwrju2b64lo20terlyzei1.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/cbwrju2b64lo20terlyzei1.json
new file mode 100644
index 000000000000..c1e6df437245
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/cbwrju2b64lo20terlyzei1.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"cbwrju2b64lo20terlyzei1","title":"2023-03-09","desc":"","updated":1678388665393,"created":1678359528501,"traitIds":["open-notebook-lschwegler"],"custom":{},"fname":"open-notebook.dbgi.lschwegler.2023.03.09","type":"note","vault":{"fsPath":"vault"},"contentHash":"427bc0d3255fa3062f3e0956a7c1d8f6","links":[],"anchors":{"this-is-lenditas-dbgi-daily-open-notebook":{"type":"header","text":"This is Lendita's DBGI daily open-notebook.","value":"this-is-lenditas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":23,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":25,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":27,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":39,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":41,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":42,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":43,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":46,"column":0,"depth":2}},"children":[],"parent":"fvmwxnhp9vq9cdbnjkn6slr","data":{}},"body":"
Regarding yesterday's correction: it is unclear to say that only the large leaves of the succulents that have not been cut are not completely dry. This means that I can't just cut the large succulent leaves because smaller ones that have not been cut are not dry either. Besides, it is time-consuming, dangerous (you could hurt yourself) and the plants are exposed to stress when I slice them.
\n
\n
Therefore, in future I will not slice the succulents but I can dry them several times in the dry freezer. Also, it might be good not to fill the freezer too much, that could also give a better result. This means I will use the freezer a lot, but unfortunately it is not always available. One option is to buy an additional one. This will probably not affect me any more as my bachelor project ends on 01.06.202023.
\n
We can't really move the scale from the lab to another place. It is extremely sensitive and expensive. Buying an additional one is an option, but also a question of time and money. So it would mean if Edouard and Stefanie could do it for me?
\n
I need a list of the plants I need to collect in the greenhouse.
\n
\n
AFTERNOON:\nThere is a scale I can use \"Mettler Toledo\".\nI now also have the list of plants I will collect in the greenhouse. There are 341 succulents and cacti, but which ones have more than one specimen, so there are probably just over 200 that I have to collect.\nI have photographed the plants for which the drying worked and those for which it did not and I have also deposited them here under vault-assets-images_lendita.
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/cjligh0jlzjbzgd4vpzs52n.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/cjligh0jlzjbzgd4vpzs52n.json
new file mode 100644
index 000000000000..31cb63739210
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/cjligh0jlzjbzgd4vpzs52n.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"cjligh0jlzjbzgd4vpzs52n","title":"2022-12-01","desc":"","updated":1669885124567,"created":1669884994347,"traitIds":["open-notebook-eb"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2022.12.01","type":"note","vault":{"fsPath":"vault"},"contentHash":"9b6fb50520f12d640d15940ece204310","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":16,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":18,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":20,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":24,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":26,"column":0,"depth":1}},"children":[],"parent":"jb94w8oc7a9tv04izb0g544","data":{}},"body":"
2022-12-01
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2022.12.01
\n
To do
\n
done
\n
Perspectives
\n
notes
\n
Interesting method to see the similarity between our samples. Could permit to identify some patterns among the plants we harvested. This method is explained in the biostatistics II course in the R code \"RCode5_clustering.R\". Would be a good tool to make some metabolomics.
\n
code
\n
links
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/cm2e2wpc8piw6qco896meya.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/cm2e2wpc8piw6qco896meya.json
new file mode 100644
index 000000000000..c64143d9ad32
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/cm2e2wpc8piw6qco896meya.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"cm2e2wpc8piw6qco896meya","title":"2023-08-09","desc":"","updated":1691587440419,"created":1691565804282,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.08.09","type":"note","vault":{"fsPath":"vault"},"contentHash":"f6f6584f880432fdf7427f748c36cde7","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2023.08.09","id":"cm2e2wpc8piw6qco896meya","vaultName":"vault"},"value":"open-notebook.dbgi.pmallard.2023.07.27","position":{"start":{"line":21,"column":34,"offset":302},"end":{"line":21,"column":76,"offset":344},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook.dbgi.pmallard.2023.07.27"}},{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2023.08.09","id":"cm2e2wpc8piw6qco896meya","vaultName":"vault"},"value":"scratch.2023.08.09.103257.plant_structure_po","alias":"plant_structure_PO","position":{"start":{"line":189,"column":1,"offset":10364},"end":{"line":189,"column":68,"offset":10431},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"scratch.2023.08.09.103257.plant_structure_po"}}],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"phenology":{"type":"header","text":"Phenology","value":"phenology","line":53,"column":0,"depth":1},"we-start-working-on-qgisorg":{"type":"header","text":"We start working on qgis.org","value":"we-start-working-on-qgisorg","line":96,"column":0,"depth":2},"how-to-handle-large-lists-eg-the-otl-species-list-in-qgis-and-qfield-":{"type":"header","text":"How to handle large lists (e.g. the OTL species list) in QGis AND QField ?","value":"how-to-handle-large-lists-eg-the-otl-species-list-in-qgis-and-qfield-","line":100,"column":0,"depth":3},"we-now-peek-into-the-other-field-wich-we-want-to-fill-when-collecting-the-samples":{"type":"header","text":"We now peek into the other field wich we want to fill when collecting the samples","value":"we-now-peek-into-the-other-field-wich-we-want-to-fill-when-collecting-the-samples","line":188,"column":0,"depth":3},"we-should-think-of-a-git-versionning-mechanism-of-the-collections-layers":{"type":"header","text":"We should think of a git versionning mechanism of the collections Layers","value":"we-should-think-of-a-git-versionning-mechanism-of-the-collections-layers","line":207,"column":0,"depth":3},"collection_campaign":{"type":"header","text":"collection_campaign","value":"collection_campaign","line":231,"column":0,"depth":2},"firstname":{"type":"header","text":"firstname","value":"firstname","line":234,"column":0,"depth":3},"lastname":{"type":"header","text":"lastname","value":"lastname","line":237,"column":0,"depth":3},"orcid":{"type":"header","text":"ORCID","value":"orcid","line":240,"column":0,"depth":3},"project_name":{"type":"header","text":"project_name","value":"project_name","line":243,"column":0,"depth":3},"location_name":{"type":"header","text":"location_name","value":"location_name","line":246,"column":0,"depth":3},"sample":{"type":"header","text":"sample","value":"sample","line":250,"column":0,"depth":2},"sample_id":{"type":"header","text":"sample_id","value":"sample_id","line":253,"column":0,"depth":3},"uuid":{"type":"header","text":"UUID","value":"uuid","line":259,"column":0,"depth":3},"organ":{"type":"header","text":"organ","value":"organ","line":264,"column":0,"depth":3},"individual":{"type":"header","text":"individual","value":"individual","line":270,"column":0,"depth":2},"taxon":{"type":"header","text":"taxon","value":"taxon","line":273,"column":0,"depth":3},"phenology-1":{"type":"header","text":"phenology","value":"phenology-1","line":279,"column":0,"depth":3},"health_state":{"type":"header","text":"health_state","value":"health_state","line":281,"column":0,"depth":3},"traits":{"type":"header","text":"traits","value":"traits","line":283,"column":0,"depth":3},"herbivory_pressure":{"type":"header","text":"herbivory_pressure","value":"herbivory_pressure","line":285,"column":0,"depth":3},"-2":{"type":"header","text":"...","value":"-2","line":287,"column":0,"depth":3},"environment":{"type":"header","text":"environment","value":"environment","line":290,"column":0,"depth":2},"abiotic":{"type":"header","text":"abiotic","value":"abiotic","line":293,"column":0,"depth":3},"weather":{"type":"header","text":"weather","value":"weather","line":294,"column":0,"depth":4},"soil_type":{"type":"header","text":"soil_type","value":"soil_type","line":296,"column":0,"depth":4},"biotic":{"type":"header","text":"biotic","value":"biotic","line":301,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":305,"column":0,"depth":3},"paused":{"type":"header","text":"Paused","value":"paused","line":311,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":313,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":315,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":317,"column":0,"depth":2},"-4":{"type":"header","text":"","value":"-4","line":319,"column":0,"depth":3},"-5":{"type":"header","text":"","value":"-5","line":320,"column":0,"depth":3},"-6":{"type":"header","text":"","value":"-6","line":321,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":324,"column":0,"depth":2}},"children":[],"parent":"9gjxhmy8g78ehub7udeszxy","data":{}},"body":"
Created a new test layer in the JBUF project on QGis\nAlso synced it with Qfield\nAdded and additonal field with a constrained vocabulary (helicity l/r)
\n
We start working on qgis.org
\n
How to handle large lists (e.g. the OTL species list) in QGis AND QField ?
\"I have a large tabular dataset ([4528269 rows x 15 columns]) which I would like to acces in QField and QGis.\nHowever accessing the file as a simple .tsv takes ages. What solutipon could you propose us ?\"
\n
Dealing with large tabular datasets in QField and QGIS can indeed be challenging due to performance issues. Here are a few strategies you can consider to improve the speed and efficiency of working with your dataset:
\n\n
\n
Spatial Indexing: If your dataset has a spatial component (geographical coordinates), make sure to create a spatial index for it. This will significantly speed up spatial queries and visualization. In QGIS, right-click on the layer, go to Properties > Source > Create Spatial Index.
\n
\n
\n
Data Simplification: If the level of detail in your dataset isn't necessary for your specific use case, consider simplifying the data. This could involve reducing the number of rows, aggregating data at coarser resolutions, or applying simplification algorithms to geometry. The \"Simplify\" tool in QGIS can help with this.
\n
\n
\n
Filtering and Subset Creation: If you don't need the entire dataset all the time, consider creating subsets based on specific criteria or regions of interest. This can make it more manageable to work with and faster to load.
\n
\n
\n
Database Management Systems: If your dataset is too large to be efficiently handled as a simple TSV file, consider using a spatial database system like PostgreSQL with the PostGIS extension. This will allow you to store and query the data more efficiently. QGIS supports connections to PostgreSQL databases.
\n
\n
\n
Indexed Attributes: Create indexes on columns that you frequently use for querying and analysis. This will speed up queries involving those columns.
\n
\n
\n
Data Simplification: If the nature of your analysis allows, you can perform data simplification techniques. This might involve decimating points, simplifying lines, or simplifying polygons, depending on your dataset type.
\n
\n
\n
Use Data-Driven Pages: If you're working with geographical data, use QGIS's Data-Driven Pages feature to only load and display a subset of your data at a time. This can greatly improve rendering performance.
\n
\n
\n
File Format: Consider converting your dataset to more efficient file formats such as GeoPackage or SQLite. These formats offer better performance and support for spatial indexing.
\n
\n
\n
Parallel Processing: Some operations in QGIS can be performed in parallel. If you have access to a multi-core processor, this can significantly speed up certain tasks.
\n
\n
\n
Hardware Considerations: Sometimes, hardware limitations can also impact performance. Ensure that you're using a machine with sufficient RAM and processing power to handle the dataset.
\n
\n
\n
Optimize Styling: Simplify the styling of your layers, especially if you're dealing with complex symbology. Complex styles can slow down rendering.
\n
\n
\n
Update Software: Make sure you're using the latest version of QField and QGIS, as newer versions often come with performance improvements.
\n
\n
\n
Data Generalization: If your data allows, you might be able to generalize or aggregate some of the data to reduce the overall volume while maintaining the important insights.
\n
\n\n
Remember that the optimal solution will depend on your specific use case and requirements. It's a good idea to experiment with a combination of these strategies to find what works best for your situation.
\n
\" We asked to expand on point 4\"
\n
Certainly, point 4 refers to using a Database Management System (DBMS) to handle your large tabular dataset. A popular choice for this purpose is PostgreSQL, combined with the PostGIS extension if you're dealing with spatial data. Here's a more detailed explanation of how this approach can benefit you:
\n\n
\n
Data Storage: Using a DBMS allows you to store your data in a structured, optimized manner. Instead of a flat TSV file, data is organized in tables, rows, and columns, which makes querying and managing the data more efficient.
\n
\n
\n
Indexing: A DBMS allows you to create various types of indexes on your data. Indexes speed up data retrieval, especially when filtering or searching for specific records. Spatial indexes, in the case of PostGIS, enhance the performance of spatial queries.
\n
\n
\n
Efficient Queries: Databases are designed to handle large datasets and complex queries. SQL (Structured Query Language) enables you to perform powerful operations on your data, filtering, aggregating, and joining tables as needed.
\n
\n
\n
Concurrency: Modern DBMSs can handle multiple users accessing the data simultaneously without data corruption or performance degradation. This is especially useful in collaborative projects.
\n
\n
\n
Transaction Management: DBMSs provide mechanisms to ensure data integrity through transactions. If an operation fails midway, the database can revert to its previous state, preventing inconsistent data.
\n
\n
\n
Data Backup and Recovery: Databases offer built-in backup and recovery mechanisms, which can be crucial when dealing with valuable or irreplaceable data.
\n
\n
\n
Data Versioning and History: Some DBMSs support versioning and maintaining historical records. This can be helpful in scenarios where you need to track changes over time.
\n
\n
\n
Scalability: If your dataset continues to grow, a DBMS can often be scaled to handle the increased load without significant performance degradation.
\n
\n\n
To set up PostgreSQL and PostGIS for your project:
\n\n
\n
Install PostgreSQL: Download and install PostgreSQL from the official website. During installation, remember the username and password you set up.
\n
\n
\n
Install PostGIS: PostGIS is an extension for PostgreSQL that adds spatial capabilities. You can install it using your system's package manager or by downloading it from the PostGIS website.
\n
\n
\n
Create a Database: Using a tool like pgAdmin (a graphical interface for PostgreSQL), create a new database.
\n
\n
\n
Enable PostGIS: Once you have your database, enable PostGIS by executing the PostGIS-specific SQL scripts that come with the installation.
\n
\n
\n
Import Data: Import your large tabular dataset into the PostgreSQL database. You can use tools like pgAdmin or the psql command-line tool to execute SQL commands.
\n
\n
\n
Create Indexes: Depending on your data's structure and usage patterns, create appropriate indexes on columns that are frequently queried or used for filtering.
\n
\n
\n
Connect QGIS: In QGIS, you can add a connection to your PostgreSQL database using the \"Add PostGIS Layers\" option. This allows you to work with your data seamlessly within QGIS.
\n
\n\n
Remember that working with a DBMS does require some learning curve, especially if you're new to SQL and database concepts. However, the benefits in terms of performance, management, and scalability can greatly outweigh the initial effort.
\n
We now peek into the other field wich we want to fill when collecting the samples
\n
We work on a first example (the field corresponding to the plants/organisms parts)
We should think of a git versionning mechanism of the collections Layers
\n
Check possibility to
\n
\n
QGIS export as csv
\n
CSV git versioning
\n
Ability to reimport an exported CSV
\n
\n\n
User pushed from QField to QField cloud
\n
PosGres is versioned to git
\n\n
We created an issue here to start documenting the wanted field
\n
This issue is meant to docment the field we want to implement in the QField collection app interface.
\n
For now this is designed in the typical collection case of the DBGI (e.g. collection of plants or plants parts). This will need to be evolved when expanding to 1. EMI samples of organisms or ensemble of organisms. 2. mostly abiotic samples (e.g. soil, water etc)
\n
DBGI case
\n
collection_campaign
\n
Here we gather information regarding the curent collection campaign.
\n
firstname
\n
(e.g. Edouard)
\n
lastname
\n
(e.g. Brülhart)
\n
ORCID
\n
(e.g. 0000-0003-3950-4065)
\n
project_name
\n
(e.g. DBGI)
\n
location_name
\n
(e.g. Botanical Garden University of Fribourg)
\n
sample
\n
Here we gather information regarding the sample (i.e. the physical material which ends up into the collection tube)
\n
sample_id
\n
(e.g. dbgi_000001)
\n
This id is internal to your collection program. It should be unique within your project. This id is obtained by scanning a barcode or QRcode of the pre-labelled sample tube.
\n
UUID
\n
(e.g. 95301d2b-d1da-4691-97e1-8cb6836a9a5a)\nAutomatically generated by QField.
\n
organ
\n
(e.g. root)
\n
The vocabulary is controlled by the terms of the PO
\n
individual
\n
Here we gather information regarding the major targeted macroscopic biological organism (e.g. the whole plant from which several leaves have been sampled). We are aware that multiple biological taxa can be sampled at the same time (e.g. endophytes, nematodes, small insects. Hence the precision of major targeted macroscopic biological organism)
\n
taxon
\n
(e.g. Aconitum vulparia)
\n
This name is obtained from a list of taxa which is coming from the OTL taxonomy\nIf the taxa is not determined, the \"ND\" value is available.
\n
phenology
\n
health_state
\n
traits
\n
herbivory_pressure
\n
...
\n
environment
\n
Here we gather any other relevant environmental information.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/cugityyeuinhj1gcev04dag.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/cugityyeuinhj1gcev04dag.json
new file mode 100644
index 000000000000..a4f471af63de
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/cugityyeuinhj1gcev04dag.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.edefossez.2023.02","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345582,"created":1695629345582,"id":"cugityyeuinhj1gcev04dag","desc":"","links":[],"anchors":{},"children":["v1h2y8tff24zhi8urx43l99"],"parent":"vm01cfxjhem1j6exiizdre9","data":{},"title":"02"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/d2q46bncdvjrt49sj5mf2un.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/d2q46bncdvjrt49sj5mf2un.json
new file mode 100644
index 000000000000..a86c7a1b573f
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/d2q46bncdvjrt49sj5mf2un.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"d2q46bncdvjrt49sj5mf2un","title":"2023-06-20","desc":"","updated":1687274258585,"created":1687262285971,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.06.20","type":"note","vault":{"fsPath":"vault"},"contentHash":"aa5a2b34139635dae601c29a3cb587a6","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"meeting-with-gbif-people":{"type":"header","text":"Meeting with GBIF people","value":"meeting-with-gbif-people","line":24,"column":0,"depth":3},"presentation":{"type":"header","text":"Presentation","value":"presentation","line":33,"column":0,"depth":3},"dump-of-links-shared-in-the-teams-chat":{"type":"header","text":"Dump of links shared in the Teams chat","value":"dump-of-links-shared-in-the-teams-chat","line":40,"column":0,"depth":3},"some-points-discussed":{"type":"header","text":"Some points discussed","value":"some-points-discussed","line":66,"column":0,"depth":3},"linking-inaturalist-observations-and-gbif":{"type":"header","text":"linking iNaturalist observations and GBIF","value":"linking-inaturalist-observations-and-gbif","line":68,"column":0,"depth":4},"how-do-we-label-an-individual-":{"type":"header","text":"how do we label an individual ?","value":"how-do-we-label-an-individual-","line":73,"column":0,"depth":4},"some-issues-posted-following-the-discussion":{"type":"header","text":"Some issues posted following the discussion","value":"some-issues-posted-following-the-discussion","line":91,"column":0,"depth":3},"paused":{"type":"header","text":"Paused","value":"paused","line":102,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":104,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":106,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":120,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":122,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":123,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":124,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":129,"column":0,"depth":2}},"children":[],"parent":"8duum2njm3z1sm4nnvgy93s","data":{}},"body":"
Cytotoxic sesquiterpene lactones from Campuloclinium macrocephalum (= Eupatorium macrocephalum)
\n
Donat introduced the possibility to dicuemnt a Physical Object using a Zenodo repo.\nUses keywords and controlled vocabulary from Darwin core. Can be customized\nhttps://zenodo.org/record/6083924
Issues because observations for botanical gardens specimens correspond to \"cultivated\" categorie, hence no \"research grade\" quality in iNat, so not taken up by GBIF
we cannot use the API (both as user or admin) see issue on Rostyk
\n
\n
the creation of a PAT apparently didn't solve the issue
\n
\n
\n
\n
have a one2one and a one2many links examples
\n
\n
\n
see for upload of a simple csv from the UI
\n
\n
\n
try to pass current Directus tables to OpenBis
\n
\n
\n
updates on QRcodes
\n
\n
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/d68hrdr6hfb2cin8tpzpivq.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/d68hrdr6hfb2cin8tpzpivq.json
new file mode 100644
index 000000000000..7e60e2c907d0
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/d68hrdr6hfb2cin8tpzpivq.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"d68hrdr6hfb2cin8tpzpivq","title":"2023-03-05","desc":"","updated":1678011342307,"created":1678011333819,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.03.05","type":"note","vault":{"fsPath":"vault"},"contentHash":"91df193a2ff24f9e9d13c8d43f638f43","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":24,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":26,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":28,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":34,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":36,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":37,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":38,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":41,"column":0,"depth":2}},"children":[],"parent":"20mx26zgvnr7cc5nucidveu","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/db5di3a586il5e4c0t7bwsf.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/db5di3a586il5e4c0t7bwsf.json
new file mode 100644
index 000000000000..2b671a384306
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/db5di3a586il5e4c0t7bwsf.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"db5di3a586il5e4c0t7bwsf","title":"Gouveia_2021","desc":"","updated":1656059639673,"created":1656059639673,"isDir":false,"custom":{"isDir":false},"fname":"biblio.gouveia_2021","type":"note","vault":{"fsPath":"vault"},"contentHash":"fcd9ea489073e2da92507f20163550aa","links":[{"type":"wiki","from":{"fname":"biblio.gouveia_2021","id":"db5di3a586il5e4c0t7bwsf","vaultName":"vault"},"value":"article","position":{"start":{"line":5,"column":14,"offset":71},"end":{"line":5,"column":25,"offset":82},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"article"}},{"type":"wiki","from":{"fname":"biblio.gouveia_2021","id":"db5di3a586il5e4c0t7bwsf","vaultName":"vault"},"value":"goncalo-j.-gouveia","position":{"start":{"line":6,"column":12,"offset":94},"end":{"line":6,"column":34,"offset":116},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"goncalo-j.-gouveia"}},{"type":"wiki","from":{"fname":"biblio.gouveia_2021","id":"db5di3a586il5e4c0t7bwsf","vaultName":"vault"},"value":"amanda-o.-shaver","position":{"start":{"line":6,"column":36,"offset":118},"end":{"line":6,"column":56,"offset":138},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"amanda-o.-shaver"}},{"type":"wiki","from":{"fname":"biblio.gouveia_2021","id":"db5di3a586il5e4c0t7bwsf","vaultName":"vault"},"value":"brianna-m.-garcia","position":{"start":{"line":6,"column":58,"offset":140},"end":{"line":6,"column":79,"offset":161},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"brianna-m.-garcia"}},{"type":"wiki","from":{"fname":"biblio.gouveia_2021","id":"db5di3a586il5e4c0t7bwsf","vaultName":"vault"},"value":"alison-m.-morse","position":{"start":{"line":6,"column":81,"offset":163},"end":{"line":6,"column":100,"offset":182},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"alison-m.-morse"}},{"type":"wiki","from":{"fname":"biblio.gouveia_2021","id":"db5di3a586il5e4c0t7bwsf","vaultName":"vault"},"value":"erik-c.-andersen","position":{"start":{"line":6,"column":102,"offset":184},"end":{"line":6,"column":122,"offset":204},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"erik-c.-andersen"}},{"type":"wiki","from":{"fname":"biblio.gouveia_2021","id":"db5di3a586il5e4c0t7bwsf","vaultName":"vault"},"value":"arthur-s.-edison","position":{"start":{"line":6,"column":124,"offset":206},"end":{"line":6,"column":144,"offset":226},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"arthur-s.-edison"}},{"type":"wiki","from":{"fname":"biblio.gouveia_2021","id":"db5di3a586il5e4c0t7bwsf","vaultName":"vault"},"value":"lauren-m.-mcintyre","position":{"start":{"line":6,"column":146,"offset":228},"end":{"line":6,"column":168,"offset":250},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"lauren-m.-mcintyre"}},{"type":"wiki","from":{"fname":"biblio.gouveia_2021","id":"db5di3a586il5e4c0t7bwsf","vaultName":"vault"},"value":"2021-07-06","position":{"start":{"line":7,"column":9,"offset":259},"end":{"line":7,"column":23,"offset":273},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2021-07-06"}},{"type":"wiki","from":{"fname":"biblio.gouveia_2021","id":"db5di3a586il5e4c0t7bwsf","vaultName":"vault"},"value":"2022-03-03","position":{"start":{"line":8,"column":15,"offset":288},"end":{"line":8,"column":29,"offset":302},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-03-03"}},{"type":"wiki","from":{"fname":"biblio.gouveia_2021","id":"db5di3a586il5e4c0t7bwsf","vaultName":"vault"},"value":"qc","position":{"start":{"line":12,"column":11,"offset":522},"end":{"line":12,"column":17,"offset":528},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"qc"}},{"type":"wiki","from":{"fname":"biblio.gouveia_2021","id":"db5di3a586il5e4c0t7bwsf","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":13,"column":3,"offset":531},"end":{"line":13,"column":10,"offset":538},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio.gouveia_2021","id":"db5di3a586il5e4c0t7bwsf","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":13,"column":12,"offset":540},"end":{"line":13,"column":29,"offset":557},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio.gouveia_2021","id":"db5di3a586il5e4c0t7bwsf","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":13,"column":31,"offset":559},"end":{"line":13,"column":41,"offset":569},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}}],"anchors":{"long-term-metabolomics-reference-material":{"type":"header","text":"Long-Term Metabolomics Reference Material","value":"long-term-metabolomics-reference-material","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"abstract":{"type":"header","text":"Abstract","value":"abstract","line":24,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":29,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
The use of quality control samples in metabolomics ensures data quality, reproducibility, and comparability between studies, analytical platforms, and laboratories. Long-term, stable, and sustainable reference materials (RMs) are a critical component of the quality assurance/quality control (QA/QC) system; however, the limited selection of currently available matrix-matched RMs reduces their applicability for widespread use. To produce an RM in any context, for any matrix that is robust to changes over the course of time, we developed iterative batch averaging method (IBAT). To illustrate this method, we generated 11 independently grown Escherichia coli batches and made an RM over the course of 10 IBAT iterations. We measured the variance of these materials by nuclear magnetic resonance (NMR) and showed that IBAT produces a stable and sustainable RM over time. This E. coli RM was then used as a food source to produce a Caenorhabditis elegans RM for a metabolomics experiment. The metabolite extraction of this material, alongside 41 independently grown individual C. elegans samples of the same genotype, allowed us to estimate the proportion of sample variation in preanalytical steps. From the NMR data, we found that 40% of the metabolite variance is due to the metabolite extraction process and analysis and 60% is due to sample-to-sample variance. The availability of RMs in untargeted metabolomics is one of the predominant needs of the metabolomics community that reach beyond quality control practices. IBAT addresses this need by facilitating the production of biologically relevant RMs and increasing their widespread use.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/dbbucdj5eyremc9m2kmravo.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/dbbucdj5eyremc9m2kmravo.json
new file mode 100644
index 000000000000..e94a402a99c4
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/dbbucdj5eyremc9m2kmravo.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"dbbucdj5eyremc9m2kmravo","title":"Dissemination","desc":"","updated":1671725001136,"created":1671723757578,"custom":{},"fname":"knowledge.dissemination","type":"note","vault":{"fsPath":"vault"},"contentHash":"b411e4196e807e5cfb1ba2b27c2e23bb","links":[],"anchors":{"ressources":{"type":"header","text":"Ressources","value":"ressources","line":21,"column":0,"depth":1}},"children":[],"parent":"eh30zgccb8kw1z36jlstijv","data":{}},"body":"
Dissemination
\n
Part of the Knowledge Dissemination aspects of the DBGI include exploring new ways for the publication of research outputs.
\n
One question that we would like to investigate is wether it is possible to publish these outputs as a research consortium.\nThe idea would be to have a the DBGI consortium as unique author and a contribution table in the article (following CREDIT system or similar) detailing each authors contribution.
\n
This would have several advantages :
\n
\n
moving away from the eternal dilemna of determining who should be first / second / third / last (colast !)
\n
a clear identification of the DBGI / EMI initiatives
\n
\n
However we need to find the correct way to implement this.\nORCIDs are apparently not made for research groups.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/dcb8mbaa09zrwjcg4vrj98q.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/dcb8mbaa09zrwjcg4vrj98q.json
new file mode 100644
index 000000000000..4f4f7d5c086f
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/dcb8mbaa09zrwjcg4vrj98q.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"dcb8mbaa09zrwjcg4vrj98q","title":"Lewin_2018","desc":"","updated":1656059639673,"created":1656059639673,"isDir":false,"custom":{"isDir":false},"fname":"biblio.lewin_2018","type":"note","vault":{"fsPath":"vault"},"contentHash":"c34996adf22cc33968508a62c10e38ac","links":[{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"article","position":{"start":{"line":5,"column":14,"offset":93},"end":{"line":5,"column":25,"offset":104},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"article"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"harris-a.-lewin","position":{"start":{"line":6,"column":12,"offset":116},"end":{"line":6,"column":31,"offset":135},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"harris-a.-lewin"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"gene-e.-robinson","position":{"start":{"line":6,"column":33,"offset":137},"end":{"line":6,"column":53,"offset":157},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"gene-e.-robinson"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"w.-john-kress","position":{"start":{"line":6,"column":55,"offset":159},"end":{"line":6,"column":72,"offset":176},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"w.-john-kress"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"william-j.-baker","position":{"start":{"line":6,"column":74,"offset":178},"end":{"line":6,"column":94,"offset":198},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"william-j.-baker"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"jonathan-coddington","position":{"start":{"line":6,"column":96,"offset":200},"end":{"line":6,"column":119,"offset":223},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"jonathan-coddington"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"keith-a.-crandall","position":{"start":{"line":6,"column":121,"offset":225},"end":{"line":6,"column":142,"offset":246},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"keith-a.-crandall"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"richard-durbin","position":{"start":{"line":6,"column":144,"offset":248},"end":{"line":6,"column":162,"offset":266},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"richard-durbin"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"scott-v.-edwards","position":{"start":{"line":6,"column":164,"offset":268},"end":{"line":6,"column":184,"offset":288},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"scott-v.-edwards"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"félix-forest","position":{"start":{"line":6,"column":186,"offset":290},"end":{"line":6,"column":202,"offset":306},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"félix-forest"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"m.-thomas-p.-gilbert","position":{"start":{"line":6,"column":204,"offset":308},"end":{"line":6,"column":228,"offset":332},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"m.-thomas-p.-gilbert"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"melissa-m.-goldstein","position":{"start":{"line":6,"column":230,"offset":334},"end":{"line":6,"column":254,"offset":358},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"melissa-m.-goldstein"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"igor-v.-grigoriev","position":{"start":{"line":6,"column":256,"offset":360},"end":{"line":6,"column":277,"offset":381},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"igor-v.-grigoriev"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"kevin-j.-hackett","position":{"start":{"line":6,"column":279,"offset":383},"end":{"line":6,"column":299,"offset":403},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"kevin-j.-hackett"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"david-haussler","position":{"start":{"line":6,"column":301,"offset":405},"end":{"line":6,"column":319,"offset":423},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"david-haussler"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"erich-d.-jarvis","position":{"start":{"line":6,"column":321,"offset":425},"end":{"line":6,"column":340,"offset":444},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"erich-d.-jarvis"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"warren-e.-johnson","position":{"start":{"line":6,"column":342,"offset":446},"end":{"line":6,"column":363,"offset":467},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"warren-e.-johnson"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"aristides-patrinos","position":{"start":{"line":6,"column":365,"offset":469},"end":{"line":6,"column":387,"offset":491},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"aristides-patrinos"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"stephen-richards","position":{"start":{"line":6,"column":389,"offset":493},"end":{"line":6,"column":409,"offset":513},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"stephen-richards"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"juan-carlos-castilla-rubio","position":{"start":{"line":6,"column":411,"offset":515},"end":{"line":6,"column":441,"offset":545},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"juan-carlos-castilla-rubio"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"marie-anne-van-sluys","position":{"start":{"line":6,"column":443,"offset":547},"end":{"line":6,"column":467,"offset":571},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"marie-anne-van-sluys"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"pamela-s.-soltis","position":{"start":{"line":6,"column":469,"offset":573},"end":{"line":6,"column":489,"offset":593},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"pamela-s.-soltis"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"xun-xu","position":{"start":{"line":6,"column":491,"offset":595},"end":{"line":6,"column":501,"offset":605},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"xun-xu"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"huanming-yang","position":{"start":{"line":6,"column":503,"offset":607},"end":{"line":6,"column":520,"offset":624},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"huanming-yang"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"guojie-zhang","position":{"start":{"line":6,"column":522,"offset":626},"end":{"line":6,"column":538,"offset":642},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"guojie-zhang"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"2018-04-24","position":{"start":{"line":7,"column":9,"offset":651},"end":{"line":7,"column":23,"offset":665},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2018-04-24"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"2022-03-29","position":{"start":{"line":8,"column":15,"offset":680},"end":{"line":8,"column":29,"offset":694},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-03-29"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"digital-botanical-garden","position":{"start":{"line":12,"column":11,"offset":912},"end":{"line":12,"column":39,"offset":940},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"digital-botanical-garden"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":13,"column":3,"offset":943},"end":{"line":13,"column":10,"offset":950},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":13,"column":12,"offset":952},"end":{"line":13,"column":29,"offset":969},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio.lewin_2018","id":"dcb8mbaa09zrwjcg4vrj98q","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":13,"column":31,"offset":971},"end":{"line":13,"column":41,"offset":981},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}}],"anchors":{"earth-biogenome-project-sequencing-life-for-the-future-of-life":{"type":"header","text":"Earth BioGenome Project: Sequencing life for the future of life","value":"earth-biogenome-project-sequencing-life-for-the-future-of-life","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"abstract":{"type":"header","text":"Abstract","value":"abstract","line":24,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":29,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
Lewin_2018
\n
Earth BioGenome Project: Sequencing life for the future of life
Increasing our understanding of Earth’s biodiversity and responsibly stewarding its resources are among the most crucial scientific and social challenges of the new millennium. These challenges require fundamental new knowledge of the organization, evolution, functions, and interactions among millions of the planet’s organisms. Herein, we present a perspective on the Earth BioGenome Project (EBP), a moonshot for biology that aims to sequence, catalog, and characterize the genomes of all of Earth’s eukaryotic biodiversity over a period of 10 years. The outcomes of the EBP will inform a broad range of major issues facing humanity, such as the impact of climate change on biodiversity, the conservation of endangered species and ecosystems, and the preservation and enhancement of ecosystem services. We describe hurdles that the project faces, including data-sharing policies that ensure a permanent, freely available resource for future scientific discovery while respecting access and benefit sharing guidelines of the Nagoya Protocol. We also describe scientific and organizational challenges in executing such an ambitious project, and the structure proposed to achieve the project’s goals. The far-reaching potential benefits of creating an open digital repository of genomic information for life on Earth can be realized only by a coordinated international effort.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/dcvcu5sl58zlbzleri15w0h.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/dcvcu5sl58zlbzleri15w0h.json
new file mode 100644
index 000000000000..e6241c007b53
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/dcvcu5sl58zlbzleri15w0h.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"dcvcu5sl58zlbzleri15w0h","title":"2023-05-14","desc":"","updated":1684048458581,"created":1684047311286,"traitIds":["open-notebook-edefossez"],"custom":{},"fname":"open-notebook.dbgi.edefossez.2023.05.14","type":"note","vault":{"fsPath":"vault"},"contentHash":"64a52f219d67c8e24d628b06b21976e7","links":[],"anchors":{"this-is-manuss-dbgi-daily-open-notebook":{"type":"header","text":"This is Manus's DBGI daily open-notebook.","value":"this-is-manuss-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":26,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":28,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":34,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":36,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":40,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":41,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":42,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":45,"column":0,"depth":2}},"children":[],"parent":"ogzue2kcra1h7e1d3jbtsfx","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/deg8kio66qjuodtul8za6iu.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/deg8kio66qjuodtul8za6iu.json
new file mode 100644
index 000000000000..0943892c6338
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/deg8kio66qjuodtul8za6iu.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"deg8kio66qjuodtul8za6iu","title":"2023-03-30","desc":"","updated":1680188062931,"created":1680168917861,"traitIds":["open-notebook-lschwegler"],"custom":{},"fname":"open-notebook.dbgi.lschwegler.2023.03.30","type":"note","vault":{"fsPath":"vault"},"contentHash":"31a55c799dd354707a110494bbc0b75d","links":[],"anchors":{"this-is-lenditas-dbgi-daily-open-notebook":{"type":"header","text":"This is Lendita's DBGI daily open-notebook.","value":"this-is-lenditas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":23,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":25,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":27,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":30,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":32,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":33,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":34,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":37,"column":0,"depth":2}},"children":[],"parent":"fvmwxnhp9vq9cdbnjkn6slr","data":{}},"body":"
Unfortunately, today was a very tedious day. I spent almost the whole day trying to find a solution for the oversized pictures that my mobile phone takes. They are far too big with my iPhone and, unfortunately, my iPhone doesn't work very well with the QField. That was very annoying. Well there is no way to set my mobile phone to take smaller pictures. So it's going to take a lot of work to resize them afterwards and also there's a lot of data and that's why the synchronisation always takes so long for me because the data is so huge.\nI then decided to devote myself to my favourite pastime and collect a few more succulents. So that the day would have something good and productive after all. However, it was a bit of a challenge because there were more cacti today and some of the spines are quite big.
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/dfj04lm9swzeg51xcbpgt5v.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/dfj04lm9swzeg51xcbpgt5v.json
new file mode 100644
index 000000000000..dc78532af4f7
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/dfj04lm9swzeg51xcbpgt5v.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"dfj04lm9swzeg51xcbpgt5v","title":"2023-03-18","desc":"","updated":1679148176835,"created":1679127559964,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.03.18","type":"note","vault":{"fsPath":"vault"},"contentHash":"f5e32f6837e38eada440823b91cc3285","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2023.03.18","id":"dfj04lm9swzeg51xcbpgt5v","vaultName":"vault"},"value":"tags.hashtag","alias":"#hashtag","position":{"start":{"line":47,"column":98,"offset":3406},"end":{"line":47,"column":106,"offset":3414},"indent":[]},"xvault":false,"to":{"fname":"tags.hashtag"}},{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2023.03.18","id":"dfj04lm9swzeg51xcbpgt5v","vaultName":"vault"},"value":"user.dbgi","alias":"@dbgi","position":{"start":{"line":54,"column":3,"offset":3652},"end":{"line":54,"column":8,"offset":3657},"indent":[]},"xvault":false,"to":{"fname":"user.dbgi"}},{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2023.03.18","id":"dfj04lm9swzeg51xcbpgt5v","vaultName":"vault"},"value":"user.earthstream.social","alias":"@earthstream.social","position":{"start":{"line":54,"column":8,"offset":3657},"end":{"line":54,"column":27,"offset":3676},"indent":[]},"xvault":false,"to":{"fname":"user.earthstream.social"}},{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2023.03.18","id":"dfj04lm9swzeg51xcbpgt5v","vaultName":"vault"},"value":"user.earth_metabolome","alias":"@earth_metabolome","position":{"start":{"line":55,"column":3,"offset":3679},"end":{"line":55,"column":20,"offset":3696},"indent":[]},"xvault":false,"to":{"fname":"user.earth_metabolome"}},{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2023.03.18","id":"dfj04lm9swzeg51xcbpgt5v","vaultName":"vault"},"value":"user.earthstream.social","alias":"@earthstream.social","position":{"start":{"line":55,"column":20,"offset":3696},"end":{"line":55,"column":39,"offset":3715},"indent":[]},"xvault":false,"to":{"fname":"user.earthstream.social"}}],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"interview-to-the-selected-projects-proposers":{"type":"header","text":"Interview to the selected projects' proposers","value":"interview-to-the-selected-projects-proposers","line":25,"column":0,"depth":2},"how-did-you-get-to-know-bicikl-and-this-call":{"type":"header","text":"How did you get to know BiCIKL and this call?","value":"how-did-you-get-to-know-bicikl-and-this-call","line":28,"column":0,"depth":3},"why-did-you-apply-here-to-address-what-challengeneed":{"type":"header","text":"Why did you apply here, to address what challenge/need?","value":"why-did-you-apply-here-to-address-what-challengeneed","line":34,"column":0,"depth":3},"how-bicikl-would-help-to-address-your-need-or-challenge":{"type":"header","text":"How BiCIKL would help to address your need or challenge?","value":"how-bicikl-would-help-to-address-your-need-or-challenge","line":39,"column":0,"depth":3},"who-will-benefit-from-your-project-target-stakeholders":{"type":"header","text":"Who will benefit from your project? (Target stakeholders)","value":"who-will-benefit-from-your-project-target-stakeholders","line":44,"column":0,"depth":3},"what-will-you-consider-as-a-success-for-your-project":{"type":"header","text":"What will you consider as a success for your project?","value":"what-will-you-consider-as-a-success-for-your-project","line":49,"column":0,"depth":3},"please-individuate-whats-your-group-of-reference":{"type":"header","text":"Please individuate what's your group of reference.","value":"please-individuate-whats-your-group-of-reference","line":54,"column":0,"depth":3},"what-can-bicikl-can-do-for-your-communitygroup-please-indicate-relevant-twitter-accounts--hashtag-for-the-group":{"type":"header","text":"What can BiCIKL can do for your community/group (please indicate relevant Twitter accounts / #hashtag for the group)","value":"what-can-bicikl-can-do-for-your-communitygroup-please-indicate-relevant-twitter-accounts--hashtag-for-the-group","line":55,"column":0,"depth":3},"please-write-here-a-personal-quote-that-resumes-the-project":{"type":"header","text":"Please write here a personal quote that resumes the project","value":"please-write-here-a-personal-quote-that-resumes-the-project","line":68,"column":0,"depth":3},"paused":{"type":"header","text":"Paused","value":"paused","line":76,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":78,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":84,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":86,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":88,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":89,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":90,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":93,"column":0,"depth":2}},"children":[],"parent":"20mx26zgvnr7cc5nucidveu","data":{}},"body":"
We have been following the work of Donat Agosti (http://plazi.org/) since some time with a lot of interest and have been aware of the BiCICKL project mostly through internet and social media.
\n
Why did you apply here, to address what challenge/need?
\n
[Max 100 words]
\n
In the last years we established LOTUS, an open electronic ressource documenting the biological occurrences of natural products (https://doi.org/10.7554/eLife.70780). More recently, we launched the Digital Botanical Gardens Initiative (DBGI https://www.dbgi.org/). This Open Science project aims to establish workflows for the characterization of the global chemodiversity. In this context we describe novel chemical information (structures, occurrences, biological activities etc.). For this we depend on the access to previous knowledge on natural products chemistry. If some is shared in LOTUS, much of it remains locked in the existing corpus of publications. The extraction of this existing knowledge is the challenge to address.
\n
How BiCIKL would help to address your need or challenge?
\n
[Max 100 words]
\n
In the frame of BiCICKL, the Swiss Institute of Bioinformatics Literature Services (SIBiLS) and Plazi's TreatmentBank service teamed to propose eBioDiv (https://ebiodiv.org/) a service for Swiss biodiversity scientists to access and disseminate their research data about species in legacy and prospective publications. Building on this experience, we will complement the pre-existing toolbox to mine the literature and extract natural products occurrences related information (chemical structures, biological organisms and their links). These objects will be associated to relevant identifiers and will then be shared in the Wikidata knowledge base were LOTUS lives.
\n
Who will benefit from your project? (Target stakeholders)
\n
[Max 100 words]
\n
As daily user of the LOTUS ressource we will evidently benefit from the expected increase in available information volume. However, the wide availability of the LOTUS ressource (through Wikidata or other ressources such as PubChem) ensures that this increase in information volume will benefit any researcher interested in the chemical description of living systems.
\n
What will you consider as a success for your project?
\n
[Max 100 words]
\n
The establishment of a robust toolbox allowing the automated extraction and sharing of natural products from the existing literature corpus would be, in itself, a success. Obviously the associated improvement expected in terms of knowledge dissemination is also very much looked after ! On a broader perspective, we also expect that such project will raise attention of researchers and publishers, on possible best practices to be implemented when reporting research outcomes in the field of natural products chemistry (e.g. tabular files of SMILES, InChI and InChIKey encoded structures together with binomial denomination of taxa).
\n
Please individuate what's your group of reference.
\n
What can BiCIKL can do for your community/group (please indicate relevant Twitter accounts / #hashtag (Private) for the group)
\n
[Max 100 words]
\n
Not sure to understand \"Please individuate what's your group of reference.\"
\n
No Twitter account for these projects. However we have two Mastodon accounts for the DBGI and Earth Metabolome Initiatives.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/dip8h9bu3zw2kxtiepqn1fy.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/dip8h9bu3zw2kxtiepqn1fy.json
new file mode 100644
index 000000000000..2c2f9986bdfb
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/dip8h9bu3zw2kxtiepqn1fy.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"dip8h9bu3zw2kxtiepqn1fy","title":"2023-04-19","desc":"","updated":1681912527595,"created":1681906996978,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.04.19","type":"note","vault":{"fsPath":"vault"},"contentHash":"cfdde78f6ce0c2c09b6bee5ca0576e7e","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":23,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":25,"column":0,"depth":2},"pybis-meeting":{"type":"header","text":"Pybis meeting","value":"pybis-meeting","line":29,"column":0,"depth":4},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":34,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":38,"column":0,"depth":2}},"children":[],"parent":"n0racr7o73zkdsyfvpomj9y","data":{}},"body":"
Discussed the data types and description of each properties from the inat table
\n
This cannot be changed afterwards! But you can create a new property and delete the old one if needed.
\n
TODO NEXT
\n
Important for redaction
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/dpyvo19kstsgofapbpkjlx0.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/dpyvo19kstsgofapbpkjlx0.json
new file mode 100644
index 000000000000..066286e5f444
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/dpyvo19kstsgofapbpkjlx0.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"dpyvo19kstsgofapbpkjlx0","title":"2023-04-05","desc":"","updated":1681158839221,"created":1680696579345,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.04.05","type":"note","vault":{"fsPath":"vault"},"contentHash":"73285c7d234be3eeb96e589d69e056f4","links":[],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":24,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":26,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":30,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":37,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":39,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":40,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":41,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":44,"column":0,"depth":2}},"children":[],"parent":"kc7cc1lgen7049um6b9vb1q","data":{}},"body":"
[] Creation of the workspace\n[] Collect of fews samples in the Botanical Garden => Samples collected were directly frozen and lyophilized
\n
Notes
\n
reminder :\ncd => access to a folder\nls =>
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/duroxonpr6sjqcls3wceqcg.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/duroxonpr6sjqcls3wceqcg.json
new file mode 100644
index 000000000000..98ea5f40febb
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/duroxonpr6sjqcls3wceqcg.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"duroxonpr6sjqcls3wceqcg","title":"2023-02-23","desc":"","updated":1677170508996,"created":1677145003318,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.02.23","type":"note","vault":{"fsPath":"vault"},"contentHash":"5277fd3ae836854662e1b3d1f64fc0cb","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2023.02.23","id":"duroxonpr6sjqcls3wceqcg","vaultName":"vault"},"value":"meetings.2023.02.22.program.notes.botanical-garden","position":{"start":{"line":64,"column":90,"offset":1279},"end":{"line":64,"column":144,"offset":1333},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"meetings.2023.02.22.program.notes.botanical-garden"}}],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"point-maelle":{"type":"header","text":"Point Maelle","value":"point-maelle","line":25,"column":0,"depth":3},"establish-a-dashboard-for-human-data-interaction-in-the-dbgi":{"type":"header","text":"Establish a Dashboard for Human Data Interaction in the DBGI","value":"establish-a-dashboard-for-human-data-interaction-in-the-dbgi","line":33,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":64,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":66,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":68,"column":0,"depth":2},"donats-contact-suggestion":{"type":"header","text":"Donat's contact suggestion","value":"donats-contact-suggestion","line":94,"column":0,"depth":3},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":107,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":109,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":110,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":111,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":114,"column":0,"depth":2}},"children":[],"parent":"g53xjv8ow93e7yy6srggzcf","data":{}},"body":"
Establish a Dashboard for Human Data Interaction in the DBGI
\n
(refer to ChordB proposal for details)
\n\n
establish a Dashboard to view \"LOTUS type data\"
\n\n
\n
molecular structures\n
\n
molecular structure metadata
\n
molecular structure taxonomies
\n
\n
\n
biological organisms\n
\n
biological organisms structure metadata
\n
biological organisms structure taxonomies
\n
\n
\n
\n
This Dashboard can feed on static tabular files
\n\n
establish a Dashboard to view \"DBGI type data\"
\n\n
\"DBGI type data\" = \"LOTUS type data\" + mass spectrometry data
\n
\n
LCMS profiles
\n
spectrums
\n
\n
cf. GNPS LCMS Dashboard
\n
This Dashboard can feed on static tabular files + Mass spec files
\n\n
Improve these Dashboard so they can feed on KG
\n\n
\n
SPARQL queries
\n
\n
Paused
\n
Done
\n
Notes
\n
\n
Red arrow system for specimens labelling
\n
\n
Thinking off the specimens identifications issues discussed in the last DBGI meeting see Botanical Garden
\n
Here is a possible solution.\nClearly not perfect but maybe a basis to be improved upon.
\n
Basically the idea would be to have a physical marker (example a red arrow in the pictures attached) pointing toward the sampled specimen.\nThe picture should be take when sampling the specimen with a large angle (in oprder to cover the spatical resolution error of the smartphone)
\n
A unique id should also be attributed to a specimen. This ID could be labelled on the red arrow and also photographed, just as for the samples id.
\n
Improvements:
\n
\n
a laser pointing system that would display both the arrow and the code on the ground.
\n
a portable printer to have the label directly printed when doing the collection.
\n
\n
Also we thought that having more than the minimal 5 pictures could be important. For ex in the picture below we see that they can be a good mean to describe even broadly the environment of the plant (e.g neighboring species, soil aspect etc)
\n
\n
\n
Donat's contact suggestion
\n
\n
I would like to recommend that you get in touch with the following colleagues to help to decide how you deal with specimen, occurrences, organism, PIDs to get it solve for you to be part of the wider community from begin with. There is a lot of experience now.
\n
For Switzerland\nMichael Greff michael.greeff@usys.ethz.ch : he is deeply involved in the SwissCollNet and the data infrastructure\nGlenn Litsios glenn.litsios@infofauna.ch: he is the head of GBIF Switzerland and infofauna and thus at the interface of data data born in Switzerland and the wider international community through the Global Biodiversity Information Facility.
\n
International and standards\nQuentin Groom quentingroom@gmail.com: he is an active botanist and IT person at the Meise botanical garden in Belgium, involved in DiSSCo and the TDWG, the standards body for biodiversity data. He is very efficient, has a wide experience and will help you to solve many of the question that arose yesterday, from a single sample, to digital images of the sample, the organism, PID. He is very well connected.\nTim Robertson trobertson@gbif.org: he is the head of informatics at GBIF, and has probably one of the best overviews of the sort of biodiversity data you deal with, as well as trends in what new data arise and how to group data to make the best use. Ultimately, I think it is important to establish metabolomes as a new data in the GBIF world, which at the same time will drive attention to the data you generate. With over 2 billion of occurrences GBIF is the leader in the field of providing access to biodiversity observation data, from genes, the images, physical specimens and material citations. Currently they are working on a review of their data model and thus might be interested what you have – or could guide you the make the right choice.
\n
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/dy871a7dv1wcjmkvrte9ex7.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/dy871a7dv1wcjmkvrte9ex7.json
new file mode 100644
index 000000000000..57bf8ca35394
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/dy871a7dv1wcjmkvrte9ex7.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"dy871a7dv1wcjmkvrte9ex7","title":"Useful Links","desc":"","updated":1664805662114,"created":1664801340968,"custom":{},"fname":"database.tutorial.directus.useful-links","type":"note","vault":{"fsPath":"vault"},"contentHash":"f8262b5323490cbab84770aca543f2fa","links":[],"anchors":{"useful-links":{"type":"header","text":"Useful links","value":"useful-links","line":9,"column":0,"depth":2}},"children":[],"parent":"2gpzh1s85imdp4ig17g5ccj","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/e0h3g27inv5xahnw011o1vh.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/e0h3g27inv5xahnw011o1vh.json
new file mode 100644
index 000000000000..e1daa01bf99d
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/e0h3g27inv5xahnw011o1vh.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"e0h3g27inv5xahnw011o1vh","title":"Audrey","desc":"","updated":1680695317286,"created":1680695317286,"custom":{},"fname":"tuto.dendron.audrey","type":"note","vault":{"fsPath":"vault"},"contentHash":"2d93c7a13b43c75ad272e31f0e0d7d18","links":[{"from":{"fname":"tuto.dendron.pm","id":"fc0kpl0jlrs3fhefs4sj0p5","vaultName":"vault"},"type":"backlink","position":{"start":{"line":2,"column":1,"offset":1},"end":{"line":2,"column":24,"offset":24},"indent":[]},"value":"tuto.dendron.audrey"}],"anchors":{},"children":[],"parent":"a3zxiteas91zfv3dh3vevei","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/e1m3ycj6u45qh4wrb1zay42.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/e1m3ycj6u45qh4wrb1zay42.json
new file mode 100644
index 000000000000..ab09922eb83c
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/e1m3ycj6u45qh4wrb1zay42.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"e1m3ycj6u45qh4wrb1zay42","title":"2023-05-08","desc":"","updated":1683816618529,"created":1683547717979,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.05.08","type":"note","vault":{"fsPath":"vault"},"contentHash":"87690b624bba10b2a1176827c2272b30","links":[],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":20,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":23,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":24,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":26,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":28,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":30,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":36,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":38,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":40,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":41,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":42,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":45,"column":0,"depth":2}},"children":[],"parent":"tvdn3jw4nqebyf7hozvvddb","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/e48em11j2ijjn7k83zulxj1.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/e48em11j2ijjn7k83zulxj1.json
new file mode 100644
index 000000000000..a75e1becdcf4
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/e48em11j2ijjn7k83zulxj1.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"e48em11j2ijjn7k83zulxj1","title":"2023-05-09","desc":"","updated":1683641610079,"created":1683641556545,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.05.09","type":"note","vault":{"fsPath":"vault"},"contentHash":"3efe95f7c3f318f57dc34cce426f4e87","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":25,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":47,"column":0,"depth":2}},"children":[],"parent":"kpf9zs71io037d9pc13w2ky","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/e5fq3ox8d3towvxhncf8fhw.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/e5fq3ox8d3towvxhncf8fhw.json
new file mode 100644
index 000000000000..ebecb89879b3
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/e5fq3ox8d3towvxhncf8fhw.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"e5fq3ox8d3towvxhncf8fhw","title":"Dbgi Wetlab Pilot","desc":"","updated":1677089819759,"created":1676273058777,"custom":{},"fname":"meetings.2023.02.22.program.notes.dbgi-wetlab-pilot","type":"note","vault":{"fsPath":"vault"},"contentHash":"1e76a30ec6e0caff60674365d64c0470","links":[{"from":{"fname":"meetings.2023.02.22.program","id":"33r62tekbrtckkfadan4kwj","vaultName":"vault"},"type":"backlink","position":{"start":{"line":35,"column":1,"offset":1055},"end":{"line":35,"column":56,"offset":1110},"indent":[]},"value":"meetings.2023.02.22.program.notes.dbgi-wetlab-pilot"}],"anchors":{},"children":[],"parent":"9676i362aou4xnjhjczonjx","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/ebf7zmqp4iniyzz0xs0grhw.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/ebf7zmqp4iniyzz0xs0grhw.json
new file mode 100644
index 000000000000..636727ddc29f
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/ebf7zmqp4iniyzz0xs0grhw.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.mwannier.2022","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345588,"created":1695629345588,"id":"ebf7zmqp4iniyzz0xs0grhw","desc":"","links":[],"anchors":{},"children":["n9g24lal4rselnrk12kp2jv","no97uw00f313ac26c6d5hfl","2n9ssq0hbel5s1n7o4aiqhl","rio2nla30r2q15iabe8v1dh"],"parent":"txikxbizqd293ie392vvl79","data":{},"title":"2022"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/eerzimvzr7s6n6j47x6sre2.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/eerzimvzr7s6n6j47x6sre2.json
new file mode 100644
index 000000000000..6664463ac5ce
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/eerzimvzr7s6n6j47x6sre2.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"eerzimvzr7s6n6j47x6sre2","title":"Bibliography gestion","desc":"","updated":1656087584412,"created":1648652137758,"custom":{},"fname":"Bachelor-Work-2022.methodology.Bibliography-gestion","type":"note","vault":{"fsPath":"vault"},"contentHash":"0e2bb4833738f30ca71c985723b23b8d","links":[],"anchors":{"how-to-use-zotero-to-add-references-on-the-digitized-botanical-gardens-initiative-dendron":{"type":"header","text":"How to use Zotero to add references on the Digitized Botanical gardens initiative Dendron:","value":"how-to-use-zotero-to-add-references-on-the-digitized-botanical-gardens-initiative-dendron","line":9,"column":0,"depth":1},"zotero-installation-and-setup":{"type":"header","text":"Zotero installation and setup:","value":"zotero-installation-and-setup","line":11,"column":0,"depth":2},"mandatory-zotero-add-ons-installation":{"type":"header","text":"Mandatory Zotero add-ons installation:","value":"mandatory-zotero-add-ons-installation","line":16,"column":0,"depth":2},"set-the-add-ons-settings":{"type":"header","text":"Set the add-ons settings:","value":"set-the-add-ons-settings","line":23,"column":0,"depth":2},"better-bibtex-for-zotero":{"type":"header","text":"Better Bibtex for Zotero:","value":"better-bibtex-for-zotero","line":25,"column":0,"depth":3},"zotfile":{"type":"header","text":"Zotfile:","value":"zotfile","line":29,"column":0,"depth":3},"mdnotes-fo-zotero":{"type":"header","text":"Mdnotes fo Zotero:","value":"mdnotes-fo-zotero","line":33,"column":0,"depth":3},"references-import-on-dendron":{"type":"header","text":"References import on Dendron:","value":"references-import-on-dendron","line":38,"column":0,"depth":2}},"children":[],"parent":"mpboa8wpvhpygf5fw4o9v11","data":{}},"body":"
Bibliography gestion
\n
How to use Zotero to add references on the Digitized Botanical gardens initiative Dendron:
Now you have to add the \"dbgi-bibliography\" shared folder on Zotero to access to all the Project references. For this, go to https://www.zotero.org/groups/4613367/dbgi-bibliography, login or register and join the Zotero group. Now you can add your references in the folder to import them on Dendron.
Click on the link, download the add-on file, open Zotero, go to Tools -> Add-ons -> drag and drop the add-on file in the Add-ons Manager -> Install Now
\n
Set the add-ons settings:
\n
Better Bibtex for Zotero:
\n
Go in Zotero to Edit -> Better BibteX and follow these settings:\n
\n
Zotfile:
\n
Go in Zotero to Tools -> Zotfile Preferences... and follow these settings in the \"Renaming Rules\" tab:\n
\n
Mdnotes fo Zotero:
\n
Go in Zotero to Tools -> Mdnotes preferences and follow these settings:\n\n
\n
References import on Dendron:
\n
1) Just for the first import: Create a folder named \"biblio\" on your computer and replace \"path to \"biblio\" folder\" with the correct pass of the folder.
\n
2) Go on the \"dbgi-bibliography\" folder in Zotero, select the new added references to export, right click on it -> Better BibTeX -> Refresh BibTeX key -> right click -> Manage Attachments -> Rename and Move -> right click -> mdnotes -> Export to markdown. You now should have the references listed in the \"biblio\" folder in this format: \"authorname_year.md\".
\n
3) To configure the import: Go to Visual Studio Code -> ctrl + shift + p -> Dendron: Configure Pod -> dendron.markdown import markdown. Then add the \"biblio\" folder path after \"src:\". Normally, some paths are already present, so comment them with \"#\" to keep the path for the others.
\n
4) For the first and next imports, you just have to repeat the 2nd step and then go to Visual Studio Code -> press ctrl+shift+p -> Dendron: Import Pod -> dendron.markdown and your references present in the \"biblio\" folder will be imported in the Dendron.
\n
Now you can add theses references in text ensured with double hooks.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/eh30zgccb8kw1z36jlstijv.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/eh30zgccb8kw1z36jlstijv.json
new file mode 100644
index 000000000000..39434509790e
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/eh30zgccb8kw1z36jlstijv.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"eh30zgccb8kw1z36jlstijv","title":"Knowledge","desc":"","updated":1671723714628,"created":1671723714628,"custom":{},"fname":"knowledge","type":"note","vault":{"fsPath":"vault"},"contentHash":"ed47830f4ddae26c0c4458bdaab9fb23","links":[],"anchors":{},"children":["m85xh7xntk9k2iygmskhx5j","dbbucdj5eyremc9m2kmravo","yyje0yaladfnf5qwpt9vx9d"],"parent":"txkHnVTI9AawnquiublXO","data":{}},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/eocbgirydyjhlyqx2oscr3g.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/eocbgirydyjhlyqx2oscr3g.json
new file mode 100644
index 000000000000..23241ce5617b
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/eocbgirydyjhlyqx2oscr3g.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"eocbgirydyjhlyqx2oscr3g","title":"2022-12-09","desc":"","updated":1670578710413,"created":1670572971175,"traitIds":["open-notebook-mw"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2022.12.09","type":"note","vault":{"fsPath":"vault"},"contentHash":"1df578bd98774742e90b27d64e0aebde","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":28,"column":0,"depth":2}},"children":[],"parent":"rio2nla30r2q15iabe8v1dh","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/eq09pttksiqib40wh6i4rbv.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/eq09pttksiqib40wh6i4rbv.json
new file mode 100644
index 000000000000..a294b8ac3a3f
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/eq09pttksiqib40wh6i4rbv.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"eq09pttksiqib40wh6i4rbv","title":"2023-08-22","desc":"","updated":1692716428494,"created":1692713413263,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.08.22","type":"note","vault":{"fsPath":"vault"},"contentHash":"1ac1afa2e88df05d10bdd531ae3310a6","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":45,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":47,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":49,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":51,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":53,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":54,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":55,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":58,"column":0,"depth":2}},"children":[],"parent":"9gjxhmy8g78ehub7udeszxy","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/eskkdd6xy9vcwqs4ckd84fz.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/eskkdd6xy9vcwqs4ckd84fz.json
new file mode 100644
index 000000000000..271e0d66f12f
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/eskkdd6xy9vcwqs4ckd84fz.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"eskkdd6xy9vcwqs4ckd84fz","title":"2023-05-04","desc":"","updated":1687269809295,"created":1683191782769,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.05.04","type":"note","vault":{"fsPath":"vault"},"contentHash":"401399533c1ac57434720f7faff3af10","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.alecabec.2023.05.04","id":"eskkdd6xy9vcwqs4ckd84fz","vaultName":"vault"},"value":"database.tutorial.directus.Basics","position":{"start":{"line":52,"column":47,"offset":1278},"end":{"line":52,"column":84,"offset":1315},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"database.tutorial.directus.Basics"}}],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":20,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":21,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":23,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":25,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":27,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":29,"column":0,"depth":2},"tutorial":{"type":"header","text":"Tutorial","value":"tutorial","line":31,"column":0,"depth":3},"dbgi-labelisation":{"type":"header","text":"DBGI Labelisation","value":"dbgi-labelisation","line":37,"column":0,"depth":2},"principe":{"type":"header","text":"Principe","value":"principe","line":38,"column":0,"depth":3},"pratical":{"type":"header","text":"Pratical","value":"pratical","line":57,"column":0,"depth":3},"-2":{"type":"header","text":"","value":"-2","line":70,"column":0,"depth":2},"plants-collect":{"type":"header","text":"Plant's collect","value":"plants-collect","line":85,"column":0,"depth":2},"extraction":{"type":"header","text":"Extraction","value":"extraction","line":93,"column":0,"depth":2},"lc-ms-analysis":{"type":"header","text":"LC-MS analysis","value":"lc-ms-analysis","line":99,"column":0,"depth":2},"datatreatment":{"type":"header","text":"Datatreatment","value":"datatreatment","line":105,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":109,"column":0,"depth":2},"-3":{"type":"header","text":"","value":"-3","line":111,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":112,"column":0,"depth":3},"-5":{"type":"header","text":"","value":"-5","line":113,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":116,"column":0,"depth":2}},"children":[],"parent":"tvdn3jw4nqebyf7hozvvddb","data":{}},"body":"
100 µL in one vial for analysis LC-MS/MS + one vial with ~XX µL in the freezer
\n
LC-MS analysis
\n
a. Preparation of the samples list
\n
b. Analysis
\n
Datatreatment
\n
for datatreament follow the link
\n
Todo tomorrow
\n
Modification of the Dbgi name dbgi_00000_01_01 (n° vial)
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/euvuax5sxsqmbujoumykvfn.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/euvuax5sxsqmbujoumykvfn.json
new file mode 100644
index 000000000000..7441b495d88b
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/euvuax5sxsqmbujoumykvfn.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"euvuax5sxsqmbujoumykvfn","title":"2023-02-16","desc":"","updated":1676543409239,"created":1676532211548,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.02.16","type":"note","vault":{"fsPath":"vault"},"contentHash":"9e8572724bd889d4d2bfa458aa71ff6d","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":15,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":19,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":21,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":25,"column":0,"depth":2}},"children":[],"parent":"3q0f349eurhhy0r6e1to0d2","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/exsm61uzanyidzpexhogq5e.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/exsm61uzanyidzpexhogq5e.json
new file mode 100644
index 000000000000..8e002aaf8c20
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/exsm61uzanyidzpexhogq5e.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"exsm61uzanyidzpexhogq5e","title":"2022-11-10","desc":"","updated":1668099375284,"created":1668098554272,"traitIds":["open-notebook-pma"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2022.11.10","type":"note","vault":{"fsPath":"vault"},"contentHash":"7dbaf319895d8798b0f34e8777e08a73","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2022.11.10","id":"exsm61uzanyidzpexhogq5e","vaultName":"vault"},"value":"user.Edefossez","alias":"@Edefossez","position":{"start":{"line":21,"column":29,"offset":162},"end":{"line":21,"column":39,"offset":172},"indent":[]},"xvault":false,"to":{"fname":"user.Edefossez"}},{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2022.11.10","id":"exsm61uzanyidzpexhogq5e","vaultName":"vault"},"value":"user.edouardbruelhart","alias":"@edouardbruelhart","position":{"start":{"line":21,"column":40,"offset":173},"end":{"line":21,"column":57,"offset":190},"indent":[]},"xvault":false,"to":{"fname":"user.edouardbruelhart"}},{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2022.11.10","id":"exsm61uzanyidzpexhogq5e","vaultName":"vault"},"value":"user.mwannier30","alias":"@mwannier30","position":{"start":{"line":21,"column":62,"offset":195},"end":{"line":21,"column":73,"offset":206},"indent":[]},"xvault":false,"to":{"fname":"user.mwannier30"}}],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"":{"type":"header","text":"","value":"","line":16,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":17,"column":0,"depth":3},"-2":{"type":"header","text":"","value":"-2","line":18,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":20,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":22,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":24,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":26,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":48,"column":0,"depth":2},"-3":{"type":"header","text":"","value":"-3","line":50,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":51,"column":0,"depth":3},"-5":{"type":"header","text":"","value":"-5","line":52,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":55,"column":0,"depth":2}},"children":[],"parent":"zrjj57h4vzxsgrmg86kfq9y","data":{}},"body":"
concerning the upload of specimens informations to iNaturalist it was decide that the QRCode should be the privileged way to upload the DBGI_sample_id. And instead of containing the airtable link (as it does now) it should contain the raw dbgi sample id.
\n
\n
Regarding the dbgi identifiers :
\n
\n
\n
it was decided that the DBGI sample identifiers should be written in the following format:\ndbgi_000001 instead of the previously used DBGI_SPL_000001. So lower case and no SPL specification
\n
\n
\n
it was decided that the DBGI extracts identifiers will be labeled as follow : dbgi_000001_01 indicating extract 01 of sample dbgi_000001
\n
\n
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/ezeh53k8zz3r8pnj53epigc.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/ezeh53k8zz3r8pnj53epigc.json
new file mode 100644
index 000000000000..75770ba5fb15
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/ezeh53k8zz3r8pnj53epigc.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"ezeh53k8zz3r8pnj53epigc","title":"2023-04-28","desc":"","updated":1682671659674,"created":1682663376332,"traitIds":["open-notebook-lschwegler"],"custom":{},"fname":"open-notebook.dbgi.lschwegler.2023.04.28","type":"note","vault":{"fsPath":"vault"},"contentHash":"b404b9cc7314dd69adbb4bab05e13c3f","links":[],"anchors":{"this-is-lenditas-dbgi-daily-open-notebook":{"type":"header","text":"This is Lendita's DBGI daily open-notebook.","value":"this-is-lenditas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":23,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":25,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":27,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":33,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":35,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":36,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":37,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":40,"column":0,"depth":2}},"children":[],"parent":"k1podevswt9ww6fu8pm77tt","data":{}},"body":"
Today I was able to put the last samples in the freeze dryer. They will definitely be completely dry over the weekend. I am now looking forward to the next steps and what will come out.\nYesterday I had trouble with the iNaturalist site, maybe it will work today. There are a few more pictures to download...
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/ezg68f5twnkrve9wvblip8r.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/ezg68f5twnkrve9wvblip8r.json
new file mode 100644
index 000000000000..e167f5d4878c
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/ezg68f5twnkrve9wvblip8r.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"ezg68f5twnkrve9wvblip8r","title":"2023-04-06","desc":"","updated":1680812774531,"created":1680770308574,"traitIds":["open-notebook-lschwegler"],"custom":{},"fname":"open-notebook.dbgi.lschwegler.2023.04.06","type":"note","vault":{"fsPath":"vault"},"contentHash":"bf4959ee432bd4f9b79531a1abb97214","links":[],"anchors":{"this-is-lenditas-dbgi-daily-open-notebook":{"type":"header","text":"This is Lendita's DBGI daily open-notebook.","value":"this-is-lenditas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":23,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":25,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":27,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":31,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":33,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":34,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":35,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":38,"column":0,"depth":2}},"children":[],"parent":"k1podevswt9ww6fu8pm77tt","data":{}},"body":"
Today I uploaded more pictures to iNaturalist. It's actually a small thing, but it's a big help that the plant names are written down and I don't have to enter them manually on iNaturalist. It also saves confusion.\nIn the afternoon I collected some more plants in the greenhouse. Mainly cacti and I have to say that it is a challenge with the spines.
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/f1b58fewgynd36i6voll7gc.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/f1b58fewgynd36i6voll7gc.json
new file mode 100644
index 000000000000..82f8ed6411b8
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/f1b58fewgynd36i6voll7gc.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"f1b58fewgynd36i6voll7gc","title":"Open Science","desc":"","updated":1677090512504,"created":1676137411411,"custom":{},"fname":"meetings.2023.02.22.program.notes.open-science","type":"note","vault":{"fsPath":"vault"},"contentHash":"f03c9841f2cba331e8dcb729cf555adc","links":[{"type":"wiki","from":{"fname":"meetings.2023.02.22.program.notes.open-science","id":"f1b58fewgynd36i6voll7gc","vaultName":"vault"},"value":"welcome","position":{"start":{"line":22,"column":16,"offset":619},"end":{"line":22,"column":27,"offset":630},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"type":"wiki","from":{"fname":"meetings.2023.02.22.program.notes.open-science","id":"f1b58fewgynd36i6voll7gc","vaultName":"vault"},"value":"open-notebook.dbgi.setup","position":{"start":{"line":24,"column":49,"offset":681},"end":{"line":24,"column":77,"offset":709},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook.dbgi.setup"}},{"from":{"fname":"meetings.2023.02.22.program","id":"33r62tekbrtckkfadan4kwj","vaultName":"vault"},"type":"backlink","position":{"start":{"line":71,"column":1,"offset":2228},"end":{"line":71,"column":52,"offset":2279},"indent":[]},"value":"meetings.2023.02.22.program.notes.open-science"}],"anchors":{"open-science":{"type":"header","text":"Open Science","value":"open-science","line":8,"column":0,"depth":1},"lightning-dendron-workshop":{"type":"header","text":"Lightning Dendron workshop","value":"lightning-dendron-workshop","line":17,"column":0,"depth":2},"generalities":{"type":"header","text":"Generalities","value":"generalities","line":22,"column":0,"depth":3},"for-dbgi":{"type":"header","text":"For DBGI","value":"for-dbgi","line":26,"column":0,"depth":3},"rio-topical-collection":{"type":"header","text":"RIO Topical collection:","value":"rio-topical-collection","line":33,"column":0,"depth":1}},"children":[],"parent":"9676i362aou4xnjhjczonjx","data":{}},"body":"
Open Science
\n
Open Science
\n
Daniel, Egon
\n
Open Science questions and Communication within the DBGI as well as communication with the community and public.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/f4lffu00dnmut291yvfk5w9.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/f4lffu00dnmut291yvfk5w9.json
new file mode 100644
index 000000000000..c7d06c9c3387
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/f4lffu00dnmut291yvfk5w9.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"workshops.2023.03","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345552,"created":1695629345552,"id":"f4lffu00dnmut291yvfk5w9","desc":"","links":[],"anchors":{},"children":["l1igcmwkz1opj486gatuniu","c3uqk0hefu9ap5nbvtpnd1l"],"parent":"nis3qb90g3x913svoftvdss","data":{},"title":"03"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/f5s4h26cmipsm6itdloyva0.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/f5s4h26cmipsm6itdloyva0.json
new file mode 100644
index 000000000000..0edc0e401a53
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/f5s4h26cmipsm6itdloyva0.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.ebruelhart.2022.11","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345574,"created":1695629345574,"id":"f5s4h26cmipsm6itdloyva0","desc":"","links":[],"anchors":{},"children":["7r9pd76ezkn4l4ksdi76z06","bou894env5gm1043gz2i06y","0162odtx60h8zjxg3kcwwl8","bpn6phjdxlh99vx2midfrhk","7hhjzqsoanl33skn32r16i4"],"parent":"vechu9nek0ai9pac4taotye","data":{},"title":"11"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/f7cx4bd1mxjt63d0daza1xb.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/f7cx4bd1mxjt63d0daza1xb.json
new file mode 100644
index 000000000000..5edc3f268056
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/f7cx4bd1mxjt63d0daza1xb.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"f7cx4bd1mxjt63d0daza1xb","title":"Gbif","desc":"","updated":1694649894962,"created":1694649883906,"custom":{},"fname":"gbif","type":"note","vault":{"fsPath":"vault"},"contentHash":"5e12a3f452150e0bf76e462610237ae4","links":[{"from":{"fname":"open-notebook.dbgi.pmallard.2023.09.14","id":"urq110fh5eyr0umzizuzcnu","vaultName":"vault"},"type":"backlink","position":{"start":{"line":16,"column":4,"offset":227},"end":{"line":16,"column":12,"offset":235},"indent":[]},"value":"gbif"}],"anchors":{"gbif-publishers":{"type":"header","text":"GBIF Publishers","value":"gbif-publishers","line":11,"column":0,"depth":3},"gbif-organizations-grscicoll":{"type":"header","text":"GBIF Organizations (GRSciColl)","value":"gbif-organizations-grscicoll","line":16,"column":0,"depth":3},"notes":{"type":"header","text":"Notes","value":"notes","line":23,"column":0,"depth":2}},"children":[],"parent":"txkHnVTI9AawnquiublXO","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/f9esq7kcpahtr3x5jgvl9gk.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/f9esq7kcpahtr3x5jgvl9gk.json
new file mode 100644
index 000000000000..2ece38a502fc
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/f9esq7kcpahtr3x5jgvl9gk.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"f9esq7kcpahtr3x5jgvl9gk","title":"_","desc":"","updated":1656059639672,"created":1656059639672,"isDir":false,"custom":{"isDir":false},"fname":"biblio._","type":"note","vault":{"fsPath":"vault"},"contentHash":"64d6a7bbe31e5a542d06f6f6956c5cf9","links":[{"type":"wiki","from":{"fname":"biblio._","id":"f9esq7kcpahtr3x5jgvl9gk","vaultName":"vault"},"value":"webpage","position":{"start":{"line":5,"column":14,"offset":42},"end":{"line":5,"column":25,"offset":53},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"webpage"}},{"type":"wiki","from":{"fname":"biblio._","id":"f9esq7kcpahtr3x5jgvl9gk","vaultName":"vault"},"value":"2022-03-01","position":{"start":{"line":6,"column":15,"offset":68},"end":{"line":6,"column":29,"offset":82},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-03-01"}},{"type":"wiki","from":{"fname":"biblio._","id":"f9esq7kcpahtr3x5jgvl9gk","vaultName":"vault"},"value":"open-science","position":{"start":{"line":9,"column":11,"offset":343},"end":{"line":9,"column":27,"offset":359},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-science"}},{"type":"wiki","from":{"fname":"biblio._","id":"f9esq7kcpahtr3x5jgvl9gk","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":10,"column":3,"offset":362},"end":{"line":10,"column":10,"offset":369},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio._","id":"f9esq7kcpahtr3x5jgvl9gk","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":10,"column":12,"offset":371},"end":{"line":10,"column":29,"offset":388},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio._","id":"f9esq7kcpahtr3x5jgvl9gk","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":10,"column":31,"offset":390},"end":{"line":10,"column":41,"offset":400},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}}],"anchors":{"open-science":{"type":"header","text":"Open Science","value":"open-science","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"abstract":{"type":"header","text":"Abstract","value":"abstract","line":19,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":24,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/fbjuw03jyx32jlngvja1lu7.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/fbjuw03jyx32jlngvja1lu7.json
new file mode 100644
index 000000000000..18e1cf969ad3
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/fbjuw03jyx32jlngvja1lu7.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"fbjuw03jyx32jlngvja1lu7","title":"Perspectives","desc":"","updated":1656087256540,"created":1656058310822,"custom":{},"fname":"Bachelor-Work-2022.Perspectives","type":"note","vault":{"fsPath":"vault"},"contentHash":"c23f18542402cdbf531d422776f93943","links":[],"anchors":{},"children":[],"parent":"a4ngr68s9ad0hxptzdp28uq","data":{}},"body":"
Perspectives
\n
During this work, we have realised that some processes are not automatized enough. In the future we will try to automatize more the processes, especially the sampling. For this, we have some ideas, like directly link the samples pictures to the QField project. Here you can see some litterature speaking about the subject.
\n
Another point is the accessiblity of the molecular network. For now, we have to dowload it and open it witha a software (Cytoscape). It would be more convenient to directly display it ont this website.
\n
And, of course, we have to continue the sampling of the Jardin Botanique de l'Université de Fribourg.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/fc0kpl0jlrs3fhefs4sj0p5.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/fc0kpl0jlrs3fhefs4sj0p5.json
new file mode 100644
index 000000000000..3a985bc9e4c7
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/fc0kpl0jlrs3fhefs4sj0p5.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"fc0kpl0jlrs3fhefs4sj0p5","title":"Pm","desc":"","updated":1680695386503,"created":1680695326251,"custom":{},"fname":"tuto.dendron.pm","type":"note","vault":{"fsPath":"vault"},"contentHash":"5ca61c28e4402a0bc599a843b3c7350f","links":[{"type":"wiki","from":{"fname":"tuto.dendron.pm","id":"fc0kpl0jlrs3fhefs4sj0p5","vaultName":"vault"},"value":"tuto.dendron.audrey","position":{"start":{"line":2,"column":1,"offset":1},"end":{"line":2,"column":24,"offset":24},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"tuto.dendron.audrey"}}],"anchors":{},"children":[],"parent":"a3zxiteas91zfv3dh3vevei","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/fc213c760vmhk0y0hpewvwe.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/fc213c760vmhk0y0hpewvwe.json
new file mode 100644
index 000000000000..f5e387cc5071
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/fc213c760vmhk0y0hpewvwe.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"fc213c760vmhk0y0hpewvwe","title":"2023-03-16","desc":"","updated":1678974244275,"created":1678952934410,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.03.16","type":"note","vault":{"fsPath":"vault"},"contentHash":"1733f237be1ca0968556ddb99835f600","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":26,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":29,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":33,"column":0,"depth":2}},"children":[],"parent":"ijpbaqnc0ewvgkwl0qq0m7e","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/fd5fcsxalusp1xece0qiwkk.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/fd5fcsxalusp1xece0qiwkk.json
new file mode 100644
index 000000000000..0191d0ce5517
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/fd5fcsxalusp1xece0qiwkk.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"fd5fcsxalusp1xece0qiwkk","title":"2023-06-28","desc":"","updated":1687946720152,"created":1687946720152,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.06.28","type":"note","vault":{"fsPath":"vault"},"contentHash":"8f6a99982df74a1d34df4744d5d1a3f8","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":24,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":26,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":28,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":30,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":32,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":33,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":34,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":37,"column":0,"depth":2}},"children":[],"parent":"8duum2njm3z1sm4nnvgy93s","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/fiwt2izex1cfte3zo4xbnmr.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/fiwt2izex1cfte3zo4xbnmr.json
new file mode 100644
index 000000000000..f375577fe253
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/fiwt2izex1cfte3zo4xbnmr.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"fiwt2izex1cfte3zo4xbnmr","title":"2023-02-23","desc":"","updated":1677159821532,"created":1677140394146,"traitIds":["open-notebook-ebruelhart"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2023.02.23","type":"note","vault":{"fsPath":"vault"},"contentHash":"eddc74bcdead44aed2dfed0c500a2a90","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":16,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":18,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":20,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":26,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":28,"column":0,"depth":1}},"children":[],"parent":"1txptky63b0ed756t77pgub","data":{}},"body":"
2023-02-23
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2023.02.23
\n
To do
\n
done
\n
Perspectives
\n
notes
\n
Today I will introduce the sample collection to Lendita. For now, QField has been sinced with her phone and is ready to use. The only problem is that we don't have liquid nitrogen in stock. I wrote an email to the person who is charged to fill it. Waiting a response...
\n
Alternatively,
\n
code
\n
links
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/fjm2ss789yrtuh2n1rguf0d.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/fjm2ss789yrtuh2n1rguf0d.json
new file mode 100644
index 000000000000..ec1e36457c53
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/fjm2ss789yrtuh2n1rguf0d.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"fjm2ss789yrtuh2n1rguf0d","title":"2023-05-05","desc":"","updated":1683296562371,"created":1683273225743,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.05.05","type":"note","vault":{"fsPath":"vault"},"contentHash":"a18cd13a71273df96ec5c4a9335d0518","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"micro-hackaton":{"type":"header","text":"Micro hackaton","value":"micro-hackaton","line":24,"column":0,"depth":3},"tasks":{"type":"header","text":"Tasks","value":"tasks","line":92,"column":0,"depth":2},"observation":{"type":"header","text":"observation","value":"observation","line":110,"column":0,"depth":2},"discused-with-audrey-just-now":{"type":"header","text":"Discused with Audrey just now","value":"discused-with-audrey-just-now","line":117,"column":0,"depth":2},"observation-1":{"type":"header","text":"observation","value":"observation-1","line":120,"column":0,"depth":2},"species":{"type":"header","text":"species","value":"species","line":131,"column":0,"depth":2},"observation-2":{"type":"header","text":"observation","value":"observation-2","line":134,"column":0,"depth":2},"extract":{"type":"header","text":"extract","value":"extract","line":137,"column":0,"depth":2},"mass-spec-run":{"type":"header","text":"mass spec run","value":"mass-spec-run","line":140,"column":0,"depth":2},"mass-spec-filename":{"type":"header","text":"mass spec filename","value":"mass-spec-filename","line":143,"column":0,"depth":2},"species-1":{"type":"header","text":"species","value":"species-1","line":151,"column":0,"depth":2},"observation-3":{"type":"header","text":"observation","value":"observation-3","line":154,"column":0,"depth":2},"extract-1":{"type":"header","text":"extract","value":"extract-1","line":157,"column":0,"depth":2},"mass-spec-run-1":{"type":"header","text":"mass spec run","value":"mass-spec-run-1","line":160,"column":0,"depth":2},"mass-spec-filename-1":{"type":"header","text":"mass spec filename","value":"mass-spec-filename-1","line":163,"column":0,"depth":2},"species-2":{"type":"header","text":"species","value":"species-2","line":168,"column":0,"depth":2},"observation-4":{"type":"header","text":"observation","value":"observation-4","line":171,"column":0,"depth":2},"extract-2":{"type":"header","text":"extract","value":"extract-2","line":174,"column":0,"depth":2},"mass-spec-run-2":{"type":"header","text":"mass spec run","value":"mass-spec-run-2","line":177,"column":0,"depth":2},"mass-spec-filename-2":{"type":"header","text":"mass spec filename","value":"mass-spec-filename-2","line":180,"column":0,"depth":2},"species-3":{"type":"header","text":"species","value":"species-3","line":186,"column":0,"depth":2},"observation-5":{"type":"header","text":"observation","value":"observation-5","line":189,"column":0,"depth":2},"extract-3":{"type":"header","text":"extract","value":"extract-3","line":192,"column":0,"depth":2},"mass-spec-run-3":{"type":"header","text":"mass spec run","value":"mass-spec-run-3","line":195,"column":0,"depth":2},"mass-spec-filename-3":{"type":"header","text":"mass spec filename","value":"mass-spec-filename-3","line":198,"column":0,"depth":2},"species-4":{"type":"header","text":"species","value":"species-4","line":203,"column":0,"depth":2},"observation-6":{"type":"header","text":"observation","value":"observation-6","line":206,"column":0,"depth":2},"extract-4":{"type":"header","text":"extract","value":"extract-4","line":209,"column":0,"depth":2},"mass-spec-run-4":{"type":"header","text":"mass spec run","value":"mass-spec-run-4","line":212,"column":0,"depth":2},"mass-spec-filename-4":{"type":"header","text":"mass spec filename","value":"mass-spec-filename-4","line":215,"column":0,"depth":2},"species-5":{"type":"header","text":"species","value":"species-5","line":221,"column":0,"depth":2},"observation-7":{"type":"header","text":"observation","value":"observation-7","line":224,"column":0,"depth":2},"extract-5":{"type":"header","text":"extract","value":"extract-5","line":227,"column":0,"depth":2},"mass-spec-run-5":{"type":"header","text":"mass spec run","value":"mass-spec-run-5","line":230,"column":0,"depth":2},"mass-spec-filename-5":{"type":"header","text":"mass spec filename","value":"mass-spec-filename-5","line":233,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":299,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":301,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":303,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":309,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":311,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":312,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":313,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":316,"column":0,"depth":2}},"children":[],"parent":"j2l2hsespzdiqm6qlppt5pc","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/fkbclzsoo3zgkkvgrlsg26g.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/fkbclzsoo3zgkkvgrlsg26g.json
new file mode 100644
index 000000000000..4d3759751d0e
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/fkbclzsoo3zgkkvgrlsg26g.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"fkbclzsoo3zgkkvgrlsg26g","title":"QField","desc":"","updated":1685099380316,"created":1680685279899,"custom":{},"fname":"Field setup.QField","type":"note","vault":{"fsPath":"vault"},"contentHash":"82f11d6f7240758f66883727f398be12","links":[],"anchors":{"here-is-the-tutorial-to-go-collect-on-the-field":{"type":"header","text":"Here is the tutorial to go collect on the field","value":"here-is-the-tutorial-to-go-collect-on-the-field","line":7,"column":0,"depth":2},"first-step-download-qfield-android-and-ios":{"type":"header","text":"First step: Download QField (Android and IOS)","value":"first-step-download-qfield-android-and-ios","line":9,"column":0,"depth":3},"second-step-open-qfield":{"type":"header","text":"Second step: Open QField:","value":"second-step-open-qfield","line":18,"column":0,"depth":3},"third-step-connect-qfield-to-the-project":{"type":"header","text":"Third step: Connect QField to the project:","value":"third-step-connect-qfield-to-the-project","line":21,"column":0,"depth":3},"field-collection":{"type":"header","text":"Field collection:","value":"field-collection","line":24,"column":0,"depth":3}},"children":[],"parent":"nat1tahs5uze95g4vu680dk","data":{}},"body":"
QField
\n
Here is the tutorial to go collect on the field
\n
First step: Download QField (Android and IOS)
\n
If you have the choice, Android is better in general for field applications (better access to phone data and possibility to use third party camera to set up pictures settings)
You will see appear the projects on the list (jbn, jbuf or emi). click on the one you want. The project will be downloaded in local, it can take several minutes, be patient.
\n
Field collection:
\n
To collect on the field, open the project you downloaded on QField by clicking on it.
\n
To add features, you have to select the layer you want to edit and pass in editing mode. Optionnaly, you can activate the GPS location to locate you approximatively on the field. When you point the plant location, tap on the \"plus\" button. This will make appear a form. sample_name field corresponds to the scientific name of the plant (open form where you can search on). sample is the code sticked on the tube. You can scan it by clicking on the 3 dots. Then you have 5 pictures to take of the species, one of the species labe (if available), one in general, one of the plant's details (flowers or remarkable details that permit identification), one where you cut and one with the species label (if availabe) and the dbgi code on the tube. Once done, the upper of the form should be green, and you can add you observation to the project.
\n
This system works offline, so each time you finish your collection, you need to update the project on the server. To do that, click on the little cloud and click on \"push modifications\". Wait until all is synced (don't close everything when you are seeing the \"finished\" text, because pictures are also uploaded, and it takes some time. You will have a notification that is saying that the process is in progress. When the notification disapears, you can close the application). Before each collection, please synce the project to not create syncronization problems. It will take the latest files on the server and store it locally on your phone.
\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/fomxq979rwrl6eq0koybvl1.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/fomxq979rwrl6eq0koybvl1.json
new file mode 100644
index 000000000000..c5f926cac41f
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/fomxq979rwrl6eq0koybvl1.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"fomxq979rwrl6eq0koybvl1","title":"agisoft","desc":"","updated":1677162025729,"created":1655669059864,"custom":{},"fname":"Bachelor-Work-2022.methodology.agisoft","type":"note","vault":{"fsPath":"vault"},"contentHash":"099f066385a0a4069401d56d5e3ccb32","links":[],"anchors":{"1-import-the-drone-pictures-":{"type":"header","text":"1) Import the drone pictures :","value":"1-import-the-drone-pictures-","line":7,"column":0,"depth":2},"2-align-the-images-and-calculate-the-low-resolution-point-cloud-":{"type":"header","text":"2) Align the images and calculate the low resolution point cloud :","value":"2-align-the-images-and-calculate-the-low-resolution-point-cloud-","line":13,"column":0,"depth":2},"3-filter-the-tie-points-cloud-model--dendron-dbgivassetsimagesalignement_parameterspng":{"type":"header","text":"3) Filter the tie points cloud model : dendron-dbgi\\vassets\\images\\alignement_parameters.png","value":"3-filter-the-tie-points-cloud-model--dendron-dbgivassetsimagesalignement_parameterspng","line":21,"column":0,"depth":2},"4-georeferencing-":{"type":"header","text":"4) Georeferencing :","value":"4-georeferencing-","line":27,"column":0,"depth":2},"5-creation-of-the-dense-points-cloud-":{"type":"header","text":"5) Creation of the dense points cloud :","value":"5-creation-of-the-dense-points-cloud-","line":37,"column":0,"depth":2},"6-exportation-of-the-orthophoto-map":{"type":"header","text":"6) Exportation of the orthophoto map","value":"6-exportation-of-the-orthophoto-map","line":41,"column":0,"depth":2}},"children":[],"parent":"mpboa8wpvhpygf5fw4o9v11","data":{}},"body":"
agisoft
\n
1) Import the drone pictures :
\n
We choose Workflow/Add Photos to select all the pictures we want to use (All the pictures taken by the drone except the ones that are blurred) (Figure 1). Now we have to deactivate the GPS data provided by the pictures, because we have made GPS control points with the Differential GPS that are much more precise. To do that, we click on the Reference tab, we select all the images with crtl+A and right click and Uncheck.
\n
Figure 1: Image import
\n
2) Align the images and calculate the low resolution point cloud :
\n
Under Workflow/Align Photos, the parameters have been set like in Figure 2. Then, the operation has been launched by clicking ok. This takes approximatively 20 minutes to run. This operation aim to calculate the drone position where each picture has been taken, to align them and create a low resolution point cloud (Figure 3).
\n
Figure 2: Alignment parameters
\n
Figure 3: Tie points cloud model
\n
3) Filter the tie points cloud model : dendron-dbgi\\vassets\\images\\alignement_parameters.png
\n
Some points in the points cloud could be wrong aligned. To obtain a high quality map, we have to remove them. Under Model/Gradual Selection we select Reconstruction Ucertainty and place the cursor at 10%. Then we ckick ok and delete (Figure 4). Then we repeat the operation with Project Accuracy. Then we have to update the camera positions in Tools/Optimize Cameras by ckicking ok.
\n
Figure 4: Gradual selection of the bad aligned points
\n
4) Georeferencing :
\n
Now we will import the ground control points to geolocate the map. You can find the ground control points coordinates of the Jardin botanique de l'université de Fribourg map here. To do that, we have to put them in a .txt file in the Reference/Import Reference tab. Then we put the settings displayed in Figure 5, then click ok and yes to all to create new control points. Then, in Reference settings we add the precision that is 2 centimeters under Marker accuracy (m).
\n
Figure 5: Importation of control points
\n
Now we have to add these points on the pictures. To do that, we double click on a miniature in the photos tab under the tie points map and zoom on the control point. Then right click on the middle of the ground control point (more precise it is done, better the map will be), Place Marker/number of the control point (Figure 6). There is no need to select all the control points on each image, but we have to put each control point on 4 to 6 different pictures minimum. When it's done, we have to click the Update transform to save the control points position (little rounded arrows in front of the Reference tab).
\n
Figure 6: Placing the points on the images
\n
5) Creation of the dense points cloud :
\n
Now we have to create the dense points cloud. We go to Workflow/Build Dense Cloud with quality high. This step can take a very long time, approximatively 30 hours with a normal laptop.
\n
6) Exportation of the orthophoto map
\n
To export the map we go to Workflow/Build Othomosaic with 0.0136m pro pixel (Figure 7), that is the common space between points of the dense points cloud (after measurement with the Ruler on the dense cloud). We can then run the build of the orhtomosaic clicking ok. When it's done, we can export it going in the Workspace, right click on the Orthomosaic/Export Orthomosaic. Select the TIFF/GeoTIFF(*.tif) type. The map is done !
\n
Figure 7: Settings to build the orthomosaic
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/fvmwxnhp9vq9cdbnjkn6slr.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/fvmwxnhp9vq9cdbnjkn6slr.json
new file mode 100644
index 000000000000..562b8d3bc87e
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/fvmwxnhp9vq9cdbnjkn6slr.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.lschwegler.2023.03","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345584,"created":1695629345584,"id":"fvmwxnhp9vq9cdbnjkn6slr","desc":"","links":[],"anchors":{},"children":["su09w077q9nm0l33h07o0pp","6wf4nyadhqx87k85fw3rnp9","cbwrju2b64lo20terlyzei1","xgd4n4u4396dd3vtm8h4ukf","wpvgtzcvxy5ctbwvlilieao","le5x6ln21yurr25bs38rahb","deg8kio66qjuodtul8za6iu"],"parent":"2jubmyun9qey56cyfo8q9zy","data":{},"title":"03"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/fz35lqwshpe5oyz25rqafic.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/fz35lqwshpe5oyz25rqafic.json
new file mode 100644
index 000000000000..c4570990b2e6
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/fz35lqwshpe5oyz25rqafic.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"fz35lqwshpe5oyz25rqafic","title":"2022-04-19","desc":"","updated":1655027552106,"created":1650386734709,"traitIds":["journalNote"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2022.04.19","type":"note","vault":{"fsPath":"vault"},"contentHash":"11b701a817a9d921a7602ff710ee2024","links":[],"anchors":{"starting-the-day":{"type":"header","text":"Starting the day","value":"starting-the-day","line":12,"column":0,"depth":2},"todays-todo":{"type":"header","text":"Today's Todo","value":"todays-todo","line":16,"column":0,"depth":3},"today-notes--ideas":{"type":"header","text":"Today Notes & ideas","value":"today-notes--ideas","line":22,"column":0,"depth":3},"ending-the-day":{"type":"header","text":"Ending the day","value":"ending-the-day","line":27,"column":0,"depth":2},"future-todo":{"type":"header","text":"Future Todo","value":"future-todo","line":29,"column":0,"depth":3}},"children":[],"parent":"gayd6f5rjdzpelcl7due270","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/fzcxvbu7h0hdan74cetvee2.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/fzcxvbu7h0hdan74cetvee2.json
new file mode 100644
index 000000000000..325335cf5c77
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/fzcxvbu7h0hdan74cetvee2.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"fzcxvbu7h0hdan74cetvee2","title":"2023-05-10","desc":"","updated":1683720447663,"created":1683708248922,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.05.10","type":"note","vault":{"fsPath":"vault"},"contentHash":"30163e458a9c374519a1536deb143ad8","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.alecabec.2023.05.10","id":"fzcxvbu7h0hdan74cetvee2","vaultName":"vault"},"value":"Bachelor-Work-2022","position":{"start":{"line":42,"column":51,"offset":1007},"end":{"line":42,"column":73,"offset":1029},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"Bachelor-Work-2022"}}],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":20,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":21,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":23,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":25,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":27,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":29,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":53,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":55,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":56,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":57,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":60,"column":0,"depth":2}},"children":[],"parent":"tvdn3jw4nqebyf7hozvvddb","data":{}},"body":"
Yesterday, we collected plant at JBN with Emmanuel. The plant with a cross are the one we collected :
\n
\n
\n
Clematis alpina (L.) Mill.
\n
\n
\n
Clematis tangutica (Maxim.) Korsh.
\n
\n
\n
Clematis vitalba L.
\n
\n
\n
Clematis chinensis Osbeck
\n
\n
\n
Clematis terniflora DC. (x 2)
\n
\n
\n
Euonymus alatus (Thunb.) Siebold
\n
\n
\n
Lonicera etrusca Boiss. (x 2)
\n
\n
\n
Lonicera nigra L.
\n
\n
\n
Lonicera xylosteum L. (x 2)
\n
\n
\n
Lonicera implexa Aiton
\n
\n
\n
Lonicera maackii (Rupr.) Maxim.
\n
\n
\n
Lonicera elisae Franch.
\n
\n
\n
Clematis flammula
\n
\n
\n
Clematis Koreana (doubt on the identification need to check with Emmnanuel and a botanist)
\n
\n
\n
Clematis recta
\n
\n
\n
Lonicera caucasica
\n
\n
\n
Plant were collected according the dbgi protocole Bachelor Work 2022 ; fews leaves of plant were collected and put into coffee filter and then into a falcon with pre drilled plastic caps. Falcon are placed into liquid nitrogen during the harvesting before beeing lyophilized.\nThe lyophilisation is realised at UniNe with the Telstar LyoQuest.
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/g152oth6vwzpqf5pohwcvg9.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/g152oth6vwzpqf5pohwcvg9.json
new file mode 100644
index 000000000000..6c8ec763d434
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/g152oth6vwzpqf5pohwcvg9.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"g152oth6vwzpqf5pohwcvg9","title":"2023-02-12","desc":"","updated":1676200384503,"created":1676200314515,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.02.12","type":"note","vault":{"fsPath":"vault"},"contentHash":"62a3989a48c71d8d8c6a5cd0232bf981","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2023.02.12","id":"g152oth6vwzpqf5pohwcvg9","vaultName":"vault"},"value":"meetings.2023.02.22.program","position":{"start":{"line":16,"column":18,"offset":241},"end":{"line":16,"column":49,"offset":272},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"meetings.2023.02.22.program"}}],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":26,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":28,"column":0,"depth":2},"updated-the-packagesjson-for-httpwwwdbgiorgdendron-jbuf":{"type":"header","text":"Updated the packages.json for http://www.dbgi.org/dendron-jbuf/","value":"updated-the-packagesjson-for-httpwwwdbgiorgdendron-jbuf","line":30,"column":0,"depth":3},"notes":{"type":"header","text":"Notes","value":"notes","line":33,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":35,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":37,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":38,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":39,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":42,"column":0,"depth":2}},"children":[],"parent":"g53xjv8ow93e7yy6srggzcf","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/g53xjv8ow93e7yy6srggzcf.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/g53xjv8ow93e7yy6srggzcf.json
new file mode 100644
index 000000000000..9278a54f5a5e
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/g53xjv8ow93e7yy6srggzcf.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.pmallard.2023.02","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345608,"created":1695629345608,"id":"g53xjv8ow93e7yy6srggzcf","desc":"","links":[],"anchors":{},"children":["inakqagsydtih7ls65eh3nb","61cgn3m1volch7385dhvltr","wa62hh70cbmrra0nxu10a69","g152oth6vwzpqf5pohwcvg9","duroxonpr6sjqcls3wceqcg"],"parent":"kdf7w680pcf9ofqywy9qgyl","data":{},"title":"02"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/g680xu048qanry10ggwpyth.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/g680xu048qanry10ggwpyth.json
new file mode 100644
index 000000000000..c2fe098db89d
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/g680xu048qanry10ggwpyth.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.ebruelhart.2023.03","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345579,"created":1695629345579,"id":"g680xu048qanry10ggwpyth","desc":"","links":[],"anchors":{},"children":["bu0nndv79i0j85ewpg66wmu"],"parent":"oa2ug1z440tznkfspdpf4fz","data":{},"title":"03"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/g96a0vk2ap7k3pbng1k5val.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/g96a0vk2ap7k3pbng1k5val.json
new file mode 100644
index 000000000000..b78541617e61
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/g96a0vk2ap7k3pbng1k5val.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"g96a0vk2ap7k3pbng1k5val","title":"2022-11-27","desc":"","updated":1669568025986,"created":1669567738536,"traitIds":["open-notebook-pma"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2022.11.27","type":"note","vault":{"fsPath":"vault"},"contentHash":"8973e3c979ca6a95f4aac21fda5291aa","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"":{"type":"header","text":"","value":"","line":16,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":17,"column":0,"depth":3},"-2":{"type":"header","text":"","value":"-2","line":18,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":20,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":22,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":24,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":26,"column":0,"depth":2},"reading-earth-biogenome-project-sequencing-life-for-the-future-of-life":{"type":"header","text":"Reading Earth BioGenome Project: Sequencing life for the future of life","value":"reading-earth-biogenome-project-sequencing-life-for-the-future-of-life","line":28,"column":0,"depth":3},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":40,"column":0,"depth":2},"-3":{"type":"header","text":"","value":"-3","line":42,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":43,"column":0,"depth":3},"-5":{"type":"header","text":"","value":"-5","line":44,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":47,"column":0,"depth":2}},"children":[],"parent":"zrjj57h4vzxsgrmg86kfq9y","data":{}},"body":"
2022-11-27
\n
This is PMA's DBGI daily open-notebook.
\n
Today is 2022.11.27
\n
Todo today
\n
\n
\n
\n
Doing
\n
Paused
\n
Done
\n
Notes
\n
Reading Earth BioGenome Project: Sequencing life for the future of life
For example, the collections of the botanical gardens of the world comprise about one-third of all species of plants and more than 40% of all endangered plant species (32), which will be an invaluable resource for the EBP.
\n
Mounce R, Smith P, Brockington S (2017) Ex situ conservation of plant diversity in the world’s botanic gardens. Nat Plants 3:795–802.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/g9o88ewzmt71l13xi7bcwf9.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/g9o88ewzmt71l13xi7bcwf9.json
new file mode 100644
index 000000000000..4f04c843f6c0
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/g9o88ewzmt71l13xi7bcwf9.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"g9o88ewzmt71l13xi7bcwf9","title":"metadata","desc":"","updated":1688888164158,"created":1688888133840,"custom":{},"fname":"Methodology.metadata","type":"note","vault":{"fsPath":"vault"},"contentHash":"9dae6440fe7f1b75b455b2561f08072e","links":[{"from":{"fname":"workshops.2023.07.12.program","id":"mr8692oaa717fbwx3sny852","vaultName":"vault"},"type":"backlink","position":{"start":{"line":45,"column":44,"offset":2387},"end":{"line":45,"column":68,"offset":2411},"indent":[]},"value":"Methodology.metadata"}],"anchors":{},"children":[],"parent":"iq3hz5b7sskcu56bl8pgbwq","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/gayd6f5rjdzpelcl7due270.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/gayd6f5rjdzpelcl7due270.json
new file mode 100644
index 000000000000..ce61a6ee9842
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/gayd6f5rjdzpelcl7due270.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.ebruelhart.2022.04","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345573,"created":1695629345573,"id":"gayd6f5rjdzpelcl7due270","desc":"","links":[],"anchors":{},"children":["zyggmfzsugn2pi3ozn3lh74","ye72xhbjnpnssvsue3nq9b9","2up7pfo1hakgwih6jyre27k","fz35lqwshpe5oyz25rqafic","o7n5pvojo1ky0hbd86e6tst"],"parent":"vechu9nek0ai9pac4taotye","data":{},"title":"04"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/gido053sxqcjskt8fsjhx7h.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/gido053sxqcjskt8fsjhx7h.json
new file mode 100644
index 000000000000..a1b9d177bce0
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/gido053sxqcjskt8fsjhx7h.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"gido053sxqcjskt8fsjhx7h","title":"2022-11-04","desc":"","updated":1667567482264,"created":1667566029156,"traitIds":["open-notebook-mw"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2022.11.04","type":"note","vault":{"fsPath":"vault"},"contentHash":"1fe6d2d0feafad76cf4dea66d9e582b8","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-change-update_dbpy-to-compare-tables":{"type":"header","text":"TODO: change 'update_db.py' to compare tables","value":"todo-change-update_dbpy-to-compare-tables","line":15,"column":0,"depth":3}},"children":[],"parent":"2n9ssq0hbel5s1n7o4aiqhl","data":{}},"body":"
2022-11-04
\n
This is Maëlle's DBGI daily open-notebook.
\n
Today is 2022.11.04
\n
TODO: change 'update_db.py' to compare tables
\n
Possible ways:
\n
\n
Truncate\n
\n
Problem => Foreign key constraint
\n
\n
\n
OUTER JOIN + Update Set\n
\n
Problem => have to specify each column
\n
\n
\n
\n
⚠️ If some changes are made through directus => Will be rechanged with inat value in the next update
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/giitkp9yhfqe7cosjgh4t6h.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/giitkp9yhfqe7cosjgh4t6h.json
new file mode 100644
index 000000000000..e52000e9ad8e
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/giitkp9yhfqe7cosjgh4t6h.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.lschwegler.2023.05","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345586,"created":1695629345587,"id":"giitkp9yhfqe7cosjgh4t6h","desc":"","links":[],"anchors":{},"children":["3yd85jqtrhbde34gqn7efi9","2rdj76oftew3rh61as7f24u","8b0ugb6ih7b94p7yy28svyy","2je6ns4o4yc32mfy3vyxedt","c4hvz8539dphj9ip5vm3nhd","nwomp6jyz8nwnj5b1bwgjvp","mni0oh3x7qnxw0iqnvmp69x","1kpxcgpbut7c2ud1i3glf9z"],"parent":"2jubmyun9qey56cyfo8q9zy","data":{},"title":"05"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/gky6rxw7vmzh944puduevsa.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/gky6rxw7vmzh944puduevsa.json
new file mode 100644
index 000000000000..793d1d92d8a4
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/gky6rxw7vmzh944puduevsa.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.pmallard.2023.01","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345607,"created":1695629345607,"id":"gky6rxw7vmzh944puduevsa","desc":"","links":[],"anchors":{},"children":["gm75s8kkf5ma494mkful592","prufwcq8vgbyg8z24eync0o","i2dm2rc63toauwg7vd9xkik"],"parent":"kdf7w680pcf9ofqywy9qgyl","data":{},"title":"01"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/gl88i1vw2085ztpwx77dwtp.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/gl88i1vw2085ztpwx77dwtp.json
new file mode 100644
index 000000000000..21298c89b63a
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/gl88i1vw2085ztpwx77dwtp.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"gl88i1vw2085ztpwx77dwtp","title":"Results","desc":"","updated":1656086656016,"created":1656058271206,"custom":{},"fname":"Bachelor-Work-2022.Results","type":"note","vault":{"fsPath":"vault"},"contentHash":"69f7ed296da808c892a9aae019bd4a25","links":[],"anchors":{"comparison-of-the-two-sample-technics":{"type":"header","text":"Comparison of the two sample technics","value":"comparison-of-the-two-sample-technics","line":12,"column":0,"depth":2},"analyse-of-the-molecular-network":{"type":"header","text":"Analyse of the molecular network","value":"analyse-of-the-molecular-network","line":22,"column":0,"depth":2}},"children":[],"parent":"a4ngr68s9ad0hxptzdp28uq","data":{}},"body":"
Results
\n
As results, we have obtained a molecular network composed of 80 plants of 40 different species (40 samples with silica gel and 40 samples with liquid nitrogen) for more than 9700 features.
\n
Molecular network composed of 80 plants samples
\n
Comparison of the two sample technics
\n
We can see below that a large majority of compounds are conserved across both sampling methods despite some minor differences. After an organisation of the samples based on chemistery ploted with a phylogenetic tree (second image below), we have seen that most species couples are located at the same position of the tree. That indicates a global conservation of the metabolites between the 2 methods.
\n
Differences between silica gel and liquid nitrogen
\n
Organisation of the samples based on their chemistry
\n
These results have been obtained by profiling the plants less than one month after the sampling. Therefor, it is not guaranteed that these results are true for older stored samples.
\n
Analyse of the molecular network
\n
For now, we haven't really observed the chemical features in detail, because hat wasn't the principle goal of this work. It will probably come later on.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/gl8u3dz9v1cnm86bqhweq3n.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/gl8u3dz9v1cnm86bqhweq3n.json
new file mode 100644
index 000000000000..f4cf1a1c948e
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/gl8u3dz9v1cnm86bqhweq3n.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"gl8u3dz9v1cnm86bqhweq3n","title":"2023-03-15","desc":"","updated":1678973505783,"created":1678867684270,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.03.15","type":"note","vault":{"fsPath":"vault"},"contentHash":"3718aa8458125eb2b8bff5b8cb19994c","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":22,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":26,"column":0,"depth":2},"lab-meeting":{"type":"header","text":"lab meeting","value":"lab-meeting","line":28,"column":0,"depth":3},"edouards-presentation":{"type":"header","text":"Edouard's presentation","value":"edouards-presentation","line":29,"column":0,"depth":4},"for-next-week":{"type":"header","text":"For next week","value":"for-next-week","line":33,"column":0,"depth":4},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":37,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":41,"column":0,"depth":2}},"children":[],"parent":"ijpbaqnc0ewvgkwl0qq0m7e","data":{}},"body":"
Do you make a feedback to BG when the taxonomy is changed? (inaturalist) => No but should
\n
iNaturalist API does not accept cultivated plants
\n
\n
For next week
\n
Read GNPS article and present
\n
TODO NEXT
\n
Important for redaction
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/gm75s8kkf5ma494mkful592.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/gm75s8kkf5ma494mkful592.json
new file mode 100644
index 000000000000..e3387797c008
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/gm75s8kkf5ma494mkful592.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"gm75s8kkf5ma494mkful592","title":"2023-01-13","desc":"","updated":1673607590889,"created":1673607346585,"traitIds":["open-notebook-pma"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.01.13","type":"note","vault":{"fsPath":"vault"},"contentHash":"a4abe2775d82a646926dc55192e8954c","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2023.01.13","id":"gm75s8kkf5ma494mkful592","vaultName":"vault"},"value":"open-notebook.dbgi.setup","position":{"start":{"line":19,"column":1,"offset":347},"end":{"line":19,"column":29,"offset":375},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook.dbgi.setup"}}],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"":{"type":"header","text":"","value":"","line":16,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":17,"column":0,"depth":3},"-2":{"type":"header","text":"","value":"-2","line":18,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":20,"column":0,"depth":2},"contacting-swissord-office":{"type":"header","text":"Contacting SwissORD office","value":"contacting-swissord-office","line":21,"column":0,"depth":3},"preparing-dbgi-km-kickstart-email":{"type":"header","text":"Preparing DBGI-KM kickstart email","value":"preparing-dbgi-km-kickstart-email","line":23,"column":0,"depth":3},"preparing-a-open-notebook-template-for-each-dbgi-member":{"type":"header","text":"Preparing a open notebook template for each DBGI member","value":"preparing-a-open-notebook-template-for-each-dbgi-member","line":25,"column":0,"depth":4},"paused":{"type":"header","text":"Paused","value":"paused","line":30,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":32,"column":0,"depth":2},"update-dbgi-consortium-at-wwwdbgiorg":{"type":"header","text":"Update DBGI consortium at www.dbgi.org","value":"update-dbgi-consortium-at-wwwdbgiorg","line":34,"column":0,"depth":3},"notes":{"type":"header","text":"Notes","value":"notes","line":37,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":39,"column":0,"depth":2},"-3":{"type":"header","text":"","value":"-3","line":41,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":42,"column":0,"depth":3},"-5":{"type":"header","text":"","value":"-5","line":43,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":46,"column":0,"depth":2}},"children":[],"parent":"gky6rxw7vmzh944puduevsa","data":{}},"body":"
2023-01-13
\n
This is PMA's DBGI daily open-notebook.
\n
Today is 2023.01.13
\n
Todo today
\n
\n
\n
\n
Doing
\n
Contacting SwissORD office
\n
For news and checking how / when we could start communicating and liberating the funds (no one answered for now)
\n
Preparing DBGI-KM kickstart email
\n
Preparing a open notebook template for each DBGI member
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/goothtp7r9v98y6xr905q60.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/goothtp7r9v98y6xr905q60.json
new file mode 100644
index 000000000000..ac9e583e0645
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/goothtp7r9v98y6xr905q60.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"goothtp7r9v98y6xr905q60","title":"first-meeting","desc":"","updated":1677769340458,"created":1677768434016,"custom":{},"fname":"BiCICKL-project.first-meeting","type":"note","vault":{"fsPath":"vault"},"contentHash":"46b3ba00ee9f140dad67a03bd567fd44","links":[{"from":{"fname":"BiCICKL-project","id":"se2pzun6petcy32hf5j3wuw","vaultName":"vault"},"type":"backlink","position":{"start":{"line":35,"column":22,"offset":3087},"end":{"line":35,"column":55,"offset":3120},"indent":[]},"value":"BiCICKL-project.first-meeting"}],"anchors":{},"children":[],"parent":"se2pzun6petcy32hf5j3wuw","data":{}},"body":"
first-meeting
\n
Participants:
\n
Pierre-Marie Allard, Patrick Ruch, Donat Agosti, Alexandre Flament, Adriano Rutz
Mass spec is used to characterize fingerprints with localization
\n
All exposed with a RDF endpoints
\n
LOTUS provides the link between (natural) small molecules and their occurrence
\n
All data in LOTUS is also in Wikidata
\n
Global Metabolome Initiative
\n
\n
Challenge: Create a link between the treatments in TB, the material citation and the small molecules
\n
Gap: some knowledge is still found only in PDF, here comes the TNA project !
\n
Possible extension of the first tasks: A possible extension would be to move towards nano-publications
\n
Key: the level of evidence (silver level of evidence → Evidence and Code Ontology ECO) for the inferred statements is relatively weak as it uses mass spectrometry
\n
annotate articles in SIBiLS using an extended SIBiLS ontology
\n
how to share the extracted knowledge:\n-talking nonopubs
\n
get a list of journals (the most important ones)\n-Phytochemistry\n-Journal of Natural Products
\n
small molecule names\nWho is providing the the list? Are there tools to recognize molecule names\nare tools available to discover names based on figure in the article?
\n
1st step. Get the articles to find out what molecule classes are present in an article\n2nd step.
get a\nget a vocabulary that includes all the methods, such as also HMBC
\n
Questions:
\n
PDF contents\nAnnotation types\nNew relationships\nExtend the SiBiLS ontology with small molecules possible?\nhow to type the relation ship molecule - organism; eaten by, tested on, living in,\nfrom where do we get the dictionnary of small molecules: source could be pubchem\ncan the provenance of users be monitored to give him project related access
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/h0tefctxts86anr2vsfp89x.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/h0tefctxts86anr2vsfp89x.json
new file mode 100644
index 000000000000..bb73a82e3b0c
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/h0tefctxts86anr2vsfp89x.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"h0tefctxts86anr2vsfp89x","title":"_a","desc":"","updated":1656059639672,"created":1656059639672,"isDir":false,"custom":{"isDir":false},"fname":"biblio._a","type":"note","vault":{"fsPath":"vault"},"contentHash":"5fa256a27a70569a5c0dbb1e2e389c2b","links":[{"type":"wiki","from":{"fname":"biblio._a","id":"h0tefctxts86anr2vsfp89x","vaultName":"vault"},"value":"webpage","position":{"start":{"line":5,"column":14,"offset":89},"end":{"line":5,"column":25,"offset":100},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"webpage"}},{"type":"wiki","from":{"fname":"biblio._a","id":"h0tefctxts86anr2vsfp89x","vaultName":"vault"},"value":"2022-03-31","position":{"start":{"line":6,"column":15,"offset":115},"end":{"line":6,"column":29,"offset":129},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-03-31"}},{"type":"wiki","from":{"fname":"biblio._a","id":"h0tefctxts86anr2vsfp89x","vaultName":"vault"},"value":"gnss-location","position":{"start":{"line":9,"column":11,"offset":211},"end":{"line":9,"column":28,"offset":228},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"gnss-location"}},{"type":"wiki","from":{"fname":"biblio._a","id":"h0tefctxts86anr2vsfp89x","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":10,"column":3,"offset":231},"end":{"line":10,"column":10,"offset":238},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio._a","id":"h0tefctxts86anr2vsfp89x","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":10,"column":12,"offset":240},"end":{"line":10,"column":29,"offset":257},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio._a","id":"h0tefctxts86anr2vsfp89x","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":10,"column":31,"offset":259},"end":{"line":10,"column":41,"offset":269},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}}],"anchors":{"rtklib-an-open-source-program-package-for-gnss-positioning":{"type":"header","text":"RTKLIB: An Open Source Program Package for GNSS Positioning","value":"rtklib-an-open-source-program-package-for-gnss-positioning","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":20,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
_a
\n
RTKLIB: An Open Source Program Package for GNSS Positioning
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/h2fwooifcd7lzne5fojsniv.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/h2fwooifcd7lzne5fojsniv.json
new file mode 100644
index 000000000000..180aba1dff77
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/h2fwooifcd7lzne5fojsniv.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"templates.open-notebook","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345549,"created":1695629345549,"id":"h2fwooifcd7lzne5fojsniv","desc":"","links":[],"anchors":{},"children":["b51e1k7qbe6jj1quhxnag04"],"parent":"kdqbwl7mqgcpks5yv8yi9kf","data":{},"title":"Open Notebook"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/h33m4gr8eny7li4yhlxotdb.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/h33m4gr8eny7li4yhlxotdb.json
new file mode 100644
index 000000000000..805e11c6369a
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/h33m4gr8eny7li4yhlxotdb.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"h33m4gr8eny7li4yhlxotdb","title":"QGIS and map sample gestion","desc":"","updated":1656077391757,"created":1655989511525,"custom":{},"fname":"Bachelor-Work-2022.methodology.QGIS-and-map-sample-gestion","type":"note","vault":{"fsPath":"vault"},"contentHash":"3d596e4c01ab70f63eb6566e9e32ef7e","links":[{"type":"wiki","from":{"fname":"Bachelor-Work-2022.methodology.QGIS-and-map-sample-gestion","id":"h33m4gr8eny7li4yhlxotdb","vaultName":"vault"},"value":"biblio._g","position":{"start":{"line":2,"column":7,"offset":7},"end":{"line":2,"column":20,"offset":20},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"biblio._g"}}],"anchors":{"connection-to-the-qgis-project":{"type":"header","text":"Connection to the QGIS project","value":"connection-to-the-qgis-project","line":14,"column":0,"depth":2},"creation-of-a-new-point-layer":{"type":"header","text":"Creation of a new point layer","value":"creation-of-a-new-point-layer","line":22,"column":0,"depth":2},"utilisation-on-the-field":{"type":"header","text":"Utilisation on the field","value":"utilisation-on-the-field","line":33,"column":0,"depth":2}},"children":[],"parent":"mpboa8wpvhpygf5fw4o9v11","data":{}},"body":"
QGIS and map sample gestion
\n
QGIS (_g) is an open source Geographic Information Software that permits to manage a lot of different geographic data. We use it to display the drone map and to add sample points.
\n
To do that, we have made a QGIS project with the drone map as base. The project can be joined creating a QFieldCloud account here.
\n
To add points, we make a new vector point layer for each sampling period. For now, Two batches are available, one for the SBL.20004 curse and one for this Bachelor Work.
\n
Connection to the QGIS project
\n
Firstly, you have to download QGIS. Then open the software and install the QField Sync plugin under Plugins/Manage and Install Plugins/QField Sync/Install Plugin, and enter your QFieldCloud login. When it's done, you have to connect you to the project with your QFieldCloud account. Then, go in QGIS to Plugins/QFieldSync/QFieldCloud Projects Overview. Here you will normally see the project. If not, clik on the refresh button on the bottom right. When you see the DBGI project, click on it and synchronize. A new page will open, select Prefer Cloud and controll that all the ticks are under the little cloud ont the window above. Then click Perform Actions. The files are big, so it will probably take some time to download the project.
\n
How to obtain the synchronized QGIS project
\n
Now you have the project synced. If you want to upload changes from QGIS to the server, you can choose Prefer Local and if you want to download changes from server to QGIS, you can choose Prefer Cloud from Synchronizing project window.
\n
Creation of a new point layer
\n
This step has not been tested from another computer as the one who host the project. If you can't create a new layer by your own, please contact edouard.bruelhart@unifr.ch to find a solution.
\n
Before going to sample on the field, we have to create a new layer for the harvesting :
\n
\n
Right click on the Other samples layer in QGIS, Export/Save Feature As. On the Save Vector Layer as... choose the GeoPackage Format, in the File name add the layer in \"C:\\Users\\edoua\\QField\\cloud\\dbgi\". Tick the Replace all selected raw field values by displayed values and then click OK.
\n
Go to Project/Properties/Relations and click Add Relation in the bottom. In the Referenced field enter Species list QGIS and select the field idTaxon. In the Referencing field entre Name of your new layer and select the field Plant_ID. Set the Relation strength to Association and then confirm by OK. Click on the bottom of Project Properties Apply and then OK.
\n
Right click on your new layer Properties/Attribute Form and renseign the field like in the the other samples layer, exept in Plant_ID field where you have to select the relation you created.
\n
Upload the changes with the QFieldSync plugin.
\n
\n
Utilisation on the field
\n
1) Download the QField application. For now, only Android smartphones are available, but an IOS application seems to be in progess.
\n
2) Open the application and login to QFieldCloud.
\n
3) Go to QFieldCloud Projects and select the DBGI one to download on the smartphone. This step can take several minutes.
\n
4) When the project is open, go to the left menu and select your layer. Then click on the pencil at the top right to pass in edition mode. You can now add the harvested samples by searching and selecting it in the Plant_ID. Don't forget to add the DBG sample code. All the other fields will be automatically filled. If, for any reason, the sample is not available in this field, select aaunknown parameter and fill the unknown field with the name of the sampled plant.
\n
5) After the sample cession, reopen the left menu and click on the cloud. You just have to select Push the modifications to upload the modifications made on the server. You can then download them to the QGIS project on the computer.
\n
6) To obtain the location data, you just have to right click on the updated layer with the points on QGIS Export/Save Feature As/CSV Format and choose the location of the CSV.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/h9iaihwud95x0ujp3nxegbm.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/h9iaihwud95x0ujp3nxegbm.json
new file mode 100644
index 000000000000..5b97f6924ccd
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/h9iaihwud95x0ujp3nxegbm.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"h9iaihwud95x0ujp3nxegbm","title":"Opentreeoflife_2019a","desc":"","updated":1656059639673,"created":1656059639673,"isDir":false,"custom":{"isDir":false},"fname":"biblio.opentreeoflife_2019a","type":"note","vault":{"fsPath":"vault"},"contentHash":"56448bc6f40daef679110c77387f31c8","links":[{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019a","id":"h9iaihwud95x0ujp3nxegbm","vaultName":"vault"},"value":"article","position":{"start":{"line":5,"column":14,"offset":56},"end":{"line":5,"column":25,"offset":67},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"article"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019a","id":"h9iaihwud95x0ujp3nxegbm","vaultName":"vault"},"value":"opentreeoflife","position":{"start":{"line":6,"column":12,"offset":79},"end":{"line":6,"column":30,"offset":97},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"opentreeoflife"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019a","id":"h9iaihwud95x0ujp3nxegbm","vaultName":"vault"},"value":"karen-a.-cranston","position":{"start":{"line":6,"column":33,"offset":100},"end":{"line":6,"column":54,"offset":121},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"karen-a.-cranston"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019a","id":"h9iaihwud95x0ujp3nxegbm","vaultName":"vault"},"value":"benjamin-redelings","position":{"start":{"line":6,"column":56,"offset":123},"end":{"line":6,"column":78,"offset":145},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"benjamin-redelings"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019a","id":"h9iaihwud95x0ujp3nxegbm","vaultName":"vault"},"value":"luna-luisa-sanchez-reyes","position":{"start":{"line":6,"column":80,"offset":147},"end":{"line":6,"column":108,"offset":175},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"luna-luisa-sanchez-reyes"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019a","id":"h9iaihwud95x0ujp3nxegbm","vaultName":"vault"},"value":"jim-allman","position":{"start":{"line":6,"column":110,"offset":177},"end":{"line":6,"column":124,"offset":191},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"jim-allman"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019a","id":"h9iaihwud95x0ujp3nxegbm","vaultName":"vault"},"value":"emily-jane-mctavish","position":{"start":{"line":6,"column":126,"offset":193},"end":{"line":6,"column":149,"offset":216},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"emily-jane-mctavish"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019a","id":"h9iaihwud95x0ujp3nxegbm","vaultName":"vault"},"value":"mark-t.-holder","position":{"start":{"line":6,"column":151,"offset":218},"end":{"line":6,"column":169,"offset":236},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"mark-t.-holder"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019a","id":"h9iaihwud95x0ujp3nxegbm","vaultName":"vault"},"value":"2019-10-30","position":{"start":{"line":7,"column":9,"offset":245},"end":{"line":7,"column":23,"offset":259},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2019-10-30"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019a","id":"h9iaihwud95x0ujp3nxegbm","vaultName":"vault"},"value":"2022-03-01","position":{"start":{"line":8,"column":15,"offset":274},"end":{"line":8,"column":29,"offset":288},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-03-01"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019a","id":"h9iaihwud95x0ujp3nxegbm","vaultName":"vault"},"value":"taxonomy","position":{"start":{"line":12,"column":11,"offset":482},"end":{"line":12,"column":23,"offset":494},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"taxonomy"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019a","id":"h9iaihwud95x0ujp3nxegbm","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":13,"column":3,"offset":497},"end":{"line":13,"column":10,"offset":504},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019a","id":"h9iaihwud95x0ujp3nxegbm","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":13,"column":12,"offset":506},"end":{"line":13,"column":29,"offset":523},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019a","id":"h9iaihwud95x0ujp3nxegbm","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":13,"column":31,"offset":525},"end":{"line":13,"column":41,"offset":535},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}},{"type":"wiki","from":{"fname":"biblio.opentreeoflife_2019a","id":"h9iaihwud95x0ujp3nxegbm","vaultName":"vault"},"value":"opentreeoflife_2019a---other","position":{"start":{"line":26,"column":3,"offset":906},"end":{"line":26,"column":35,"offset":938},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"opentreeoflife_2019a---other"}}],"anchors":{"open-tree-of-life-taxonomy":{"type":"header","text":"Open Tree of Life Taxonomy","value":"open-tree-of-life-taxonomy","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"abstract":{"type":"header","text":"Abstract","value":"abstract","line":22,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":27,"column":0,"depth":2},"highlights-and-annotations":{"type":"header","text":"Highlights and Annotations","value":"highlights-and-annotations","line":31,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
The reference taxonomy is an algorithmic combination of several source taxonomies. For code, see the source code repository. Version 3.2 draft 9 was generated using commit 618bab0ca3.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/ha16yu7114ctzc0r7x83dkk.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/ha16yu7114ctzc0r7x83dkk.json
new file mode 100644
index 000000000000..f2d904ccbb6f
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/ha16yu7114ctzc0r7x83dkk.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"ha16yu7114ctzc0r7x83dkk","title":"Emi Rdb Tables","desc":"","updated":1695389432929,"created":1695388693267,"custom":{},"fname":"emi-rdb-tables","type":"note","vault":{"fsPath":"vault"},"contentHash":"736b5db370d2345f690939422e389012","links":[{"from":{"fname":"open-notebook.dbgi.pmallard.2023.09.22","id":"se52zr89ov9hlvdol71v5w6","vaultName":"vault"},"type":"backlink","position":{"start":{"line":65,"column":16,"offset":1039},"end":{"line":65,"column":34,"offset":1057},"indent":[]},"value":"emi-rdb-tables"}],"anchors":{},"children":[],"parent":"txkHnVTI9AawnquiublXO","data":{}},"body":"
Emi Rdb Tables
\n
Think about experimental methods open repositaries.\nThen Method 1 could have its DOI associated
\n
2 DB
\n
\n
EMI DB
\n
Project DB (DBGI DB)
\n
\n
Across project DB all headers should be identical.
\n
List of tables to be implemented in the Project DB
\n
\n
\n
Sub-projects
\n
\n
\n
Labels (currentky the Samples table)
\n
\n
\n
This table collect the currently reserved and or used labels (corresponds to all printe labels untill now)
\n
\n
Field_Samples
\n
\n
This table contains the efectively collected and dryed samples\nid example : dbgi_000001
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/hiqtw79lwjeom9jxybqyyff.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/hiqtw79lwjeom9jxybqyyff.json
new file mode 100644
index 000000000000..04a025632eae
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/hiqtw79lwjeom9jxybqyyff.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"tuto","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345549,"created":1695629345549,"id":"hiqtw79lwjeom9jxybqyyff","desc":"","links":[],"anchors":{},"children":["a3zxiteas91zfv3dh3vevei"],"parent":"txkHnVTI9AawnquiublXO","data":{},"title":"Tuto"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/hj6q3ha4293u8y57c4uvm70.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/hj6q3ha4293u8y57c4uvm70.json
new file mode 100644
index 000000000000..4a6726d1d0a4
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/hj6q3ha4293u8y57c4uvm70.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"hj6q3ha4293u8y57c4uvm70","title":"2023-07-01","desc":"","updated":1688224084340,"created":1688211323824,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.07.01","type":"note","vault":{"fsPath":"vault"},"contentHash":"4d3644dbcef52a2ddb1f00f6e4d280d9","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":249,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":251,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":253,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":255,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":257,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":258,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":259,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":262,"column":0,"depth":2}},"children":[],"parent":"vvcscq2gtvhdsmtmbqfqjqb","data":{}},"body":"
On draw.io it is possible to automatically create a schema from the SQL commands
\n
CREATE TABLE Suppliers\n(\nsupplier_id int NOT NULL PRIMARY KEY,\nsupplier_name char(50) NOT NULL,\ncontact_name char(50),\n);\nCREATE TABLE Customers\n(\ncustomer_id int NOT NULL PRIMARY KEY,\ncustomer_name char(50) NOT NULL,\naddress char(50),\ncity char(50),\nstate char(25),\nzip_code char(10)\n);
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/hjgld8jupnd9k7kzqe0ubra.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/hjgld8jupnd9k7kzqe0ubra.json
new file mode 100644
index 000000000000..e7f7581ca8a1
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/hjgld8jupnd9k7kzqe0ubra.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.mwannier.2023","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345591,"created":1695629345591,"id":"hjgld8jupnd9k7kzqe0ubra","desc":"","links":[],"anchors":{},"children":["8ssbwflafvawcjbtofvfiuq","3q0f349eurhhy0r6e1to0d2","ijpbaqnc0ewvgkwl0qq0m7e","n0racr7o73zkdsyfvpomj9y","kpf9zs71io037d9pc13w2ky","0rjtydgu2hme3vo7hu0vkj8","wwzjtgx2uhjbijqzagd3x3m"],"parent":"txikxbizqd293ie392vvl79","data":{},"title":"2023"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/hldpw41a5q15prhcv9sdunm.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/hldpw41a5q15prhcv9sdunm.json
new file mode 100644
index 000000000000..ccae5ce776e1
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/hldpw41a5q15prhcv9sdunm.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"hldpw41a5q15prhcv9sdunm","title":"2023-04-04","desc":"","updated":1680618509221,"created":1680618477743,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.04.04","type":"note","vault":{"fsPath":"vault"},"contentHash":"a785067c9d5d29499115324d7541f1b9","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":25,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":43,"column":0,"depth":2}},"children":[],"parent":"n0racr7o73zkdsyfvpomj9y","data":{}},"body":"
There are several ways to optimize a Dash app for performance:
\n\n
\n
Use a caching mechanism: If your app has to perform complex computations, it can be useful to cache the results. This can reduce the number of computations that the app has to perform and improve the overall performance. Dash provides a built-in caching mechanism called dcc.memoize.
\n
\n
\n
Use server-side callbacks: By default, Dash uses client-side callbacks, which means that all the data has to be transferred to the client and back to the server. This can be slow for large datasets. By using server-side callbacks, the data stays on the server, which can improve the performance.
\n
\n
\n
Optimize data loading: If your app loads data from external sources, you should make sure that the data is loaded efficiently. For example, you could load the data asynchronously or use a database to store the data.
\n
\n
\n
Use efficient data structures: Make sure that you are using efficient data structures to store and manipulate your data. For example, if you are working with large datasets, you might want to use Dask instead of Pandas.
\n
\n
\n
Optimize layout: The layout of your app can also impact performance. Make sure that you are not rendering unnecessary components and that your layout is optimized for performance.
\n
\n
\n
Use an efficient hosting service: If you are running your app on a server, make sure that you are using an efficient hosting service. This can include using a dedicated server or using a cloud-based hosting service like AWS or Heroku.
\n
\n
\n
Reduce the size of your data: If your app is slow because it has to transfer a lot of data, you might want to reduce the size of your data. For example, you could compress your data or only transfer the data that is necessary for the current view.
\n
\n\n
Important for redaction
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/hme3uzximkuhxdsn09ihhd7.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/hme3uzximkuhxdsn09ihhd7.json
new file mode 100644
index 000000000000..c43787cd712e
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/hme3uzximkuhxdsn09ihhd7.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"hme3uzximkuhxdsn09ihhd7","title":"Nextcloud","desc":"","updated":1685096925982,"created":1685096715622,"custom":{},"fname":"Nextcloud","type":"note","vault":{"fsPath":"vault"},"contentHash":"962a711e14423c2cedec52bda3729472","links":[],"anchors":{},"children":[],"parent":"txkHnVTI9AawnquiublXO","data":{}},"body":"
Nextcloud
\n
All the informations collected on the field are present here.
\n
This includes the plants pictures and the informations about the collected plants, in csv format.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/hng25n39yihcxfksy5fd7u9.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/hng25n39yihcxfksy5fd7u9.json
new file mode 100644
index 000000000000..5af5d5127a2e
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/hng25n39yihcxfksy5fd7u9.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"hng25n39yihcxfksy5fd7u9","title":"2023-03-27","desc":"","updated":1679929943516,"created":1679899306420,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.03.27","type":"note","vault":{"fsPath":"vault"},"contentHash":"94f888f07935de0bc6b98c476016eb68","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":23,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":25,"column":0,"depth":2},"workshop":{"type":"header","text":"workshop","value":"workshop","line":27,"column":0,"depth":4},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":32,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":36,"column":0,"depth":2}},"children":[],"parent":"ijpbaqnc0ewvgkwl0qq0m7e","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/i2dm2rc63toauwg7vd9xkik.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/i2dm2rc63toauwg7vd9xkik.json
new file mode 100644
index 000000000000..6dca3e773796
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/i2dm2rc63toauwg7vd9xkik.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"i2dm2rc63toauwg7vd9xkik","title":"2023-01-24","desc":"","updated":1674553633040,"created":1674553518680,"traitIds":["open-notebook-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.01.24","type":"note","vault":{"fsPath":"vault"},"contentHash":"905a07892fca729a113a9b2d15d399b4","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"first-meeting-stephanie":{"type":"header","text":"First Meeting Stephanie","value":"first-meeting-stephanie","line":23,"column":0,"depth":3},"paused":{"type":"header","text":"Paused","value":"paused","line":31,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":33,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":35,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":37,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":39,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":40,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":41,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":44,"column":0,"depth":2}},"children":[],"parent":"gky6rxw7vmzh944puduevsa","data":{}},"body":"
We discussed the Dendron System and had a quick presentation of DBGI and EMI\nDiscussed possibility of Anacardiaceae sampling in the garden
\n
Paused
\n
Done
\n
Notes
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/i8rd7wzfdabtsj18zgrzrub.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/i8rd7wzfdabtsj18zgrzrub.json
new file mode 100644
index 000000000000..25ede76c58e2
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/i8rd7wzfdabtsj18zgrzrub.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"i8rd7wzfdabtsj18zgrzrub","title":"Pmallard","desc":"","updated":1693579268593,"created":1676013245767,"custom":{},"fname":"templates.open-notebook.dbgi.pmallard","type":"note","vault":{"fsPath":"vault"},"contentHash":"16215f789c3b03b884154e42b0055a22","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":9,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":13,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":15,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":17,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":18,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":20,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":22,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":24,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":26,"column":0,"depth":2},"todo-tomorrow-one-day--or-never":{"type":"header","text":"Todo tomorrow, one day ... or never","value":"todo-tomorrow-one-day--or-never","line":28,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":30,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":31,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":32,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":35,"column":0,"depth":2}},"children":[],"parent":"b51e1k7qbe6jj1quhxnag04","data":{}},"body":"
Pmallard
\n
This is PMA's DBGI daily open-notebook.
\n
Today is {{ CURRENT_YEAR }}.{{ CURRENT_MONTH }}.{{ CURRENT_DAY }}
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/i9dvi1nopoccdz91ezhvxne.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/i9dvi1nopoccdz91ezhvxne.json
new file mode 100644
index 000000000000..62408ac9c7fa
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/i9dvi1nopoccdz91ezhvxne.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"i9dvi1nopoccdz91ezhvxne","title":"conversations","desc":"","updated":1688886699835,"created":1688884942412,"custom":{},"fname":"BiCICKL-project.nanopublications.ressources.conversations","type":"note","vault":{"fsPath":"vault"},"contentHash":"37ab991f764fdbb8e8aa9e72d85f2cd4","links":[],"anchors":{"relevant-parts-of-email-conversations-on-nanopubs":{"type":"header","text":"Relevant parts of email conversations on nanopubs","value":"relevant-parts-of-email-conversations-on-nanopubs","line":8,"column":0,"depth":1},"involved-persons":{"type":"header","text":"Involved persons","value":"involved-persons","line":10,"column":0,"depth":2},"lp":{"type":"header","text":"LP","value":"lp","line":23,"column":0,"depth":2},"lb":{"type":"header","text":"LB","value":"lb","line":41,"column":0,"depth":2},"follow-up-tk":{"type":"header","text":"Follow-up (TK)","value":"follow-up-tk","line":92,"column":0,"depth":2},"follow-up-lb":{"type":"header","text":"Follow-up (LB)","value":"follow-up-lb","line":136,"column":0,"depth":2},"lyubo":{"type":"header","text":"Lyubo","value":"lyubo","line":143,"column":2,"depth":2},"tk":{"type":"header","text":"TK","value":"tk","line":247,"column":0,"depth":2}},"children":[],"parent":"ivul4gk3y7gncrk8qg7phey","data":{}},"body":"
Thank you very much for your detailed response. No need to say, that we are much interested in this particular format of nanopubs for biodiversity which we can add to the list of already developed or \"in-progress\" biodiversity nanopub templates.
\n
From my point of view, to match the format, we should have the following pre-conditions about the sources to which we can link the different elements of the nanopub format. To save time for separate discussions, I CC Tobias and Daniel Mietchen with whom we collaborate in designing biodiversity nanopubs for quite some time already.
\n
So, in your example I think we should consider (and hopefully have) the following elements:
\n\n
This organism - Where to take the HTTP ID for that particular specimen? - It is not possible to get it from one universal place, as such does not exist yet. The user, however, should be able to paste the HTTP ID taken from the resource where this specimen is presented digitally, e.g. iDigBio, or some EU institutions using CETAF HTTP IDs.
\n
Belonging to Taxon X - A dropdown list displaying taxon names taken from a specific \"trusted sources\" dumb of ChecklistBank from which the user can select a name is already embedded in the workflow of the Biodiversity Data Journal at Nanodash. If the taxon is not present, then the user can put the http link to a missing name using one of the few trusted nomenclators (IPNI, ZooBank, Index Fungorum or Mycobank, and few else). NOTE: these taxon names are Taxon IDs, not really TaxonConcept IDs (not ideal, but certainly better than nothing, especially at the start of all this).
\n
Contains (or extracted from) (relationship, can be taken from several ontologies)
\n
Chemical compound - where to take the HTTP IDs for these from? The best would be a controlled vocabulary, but I am sure you know this landscape much better than us.
\n
Who has published this: - ORCID of the creator, easy and already existing in Nanodash.
\n
Where this assertion has been taken from? - ideally from an article DOI, or if this is de novo information, then perhaps using a category \"unpublished data\" or so.
\n
When this has been published - timestamp, easy.
\n\n
LB
\n
In our proposal on modelling a general structure for biodiversity nanopubs, the subject (OrganismID, IdentifeidAs [TaxonNameID], AccordingTo [TaxonConceptID], LifeStageID) might be re-used in several templates, while the predicate and the object should use different ontologies, depending on the use case. Currently we develop several other templates with the intention to follow a general pattern which would make modifications to it easy and coherent, hence my questions:
\n
Which ontology do you use for the predicate (e.g., relation between an organism and a chemical compound (or gene) extracted from it)?\nWhich controlled vocabulary of chemical compounds do you use look up the ID of the compound in question?\nWould your model fit into the general pattern as illustrated below?
\n
A comment would be much appreciated!
\n
Best regards,\nLyubomir
\n
SUBJECT\nIdentical in (most) biodiversity nanopubs:
\n
OrganismID:\nIdentifiedAs: TaxonNameID\nAccording to (Sec.): TaxonConceptID\nLifeStage: Ontology-based
\n
PREDICATE (RELATION)\nRelation: Terms from different ontologies depending on the template, e.g. “preys on”, “occurs in”, “contains”
\n
OBJECT
\n
Different for the different biodiversity nanopub templates (see below under the different templates).
\n
PUBLICATION INFO
\n
Identical in all biodiversity nanopubs:\nBasisOfRecord:drop-down list of terms according to dwc:BasisOfRecird (DOI, event, preserved specimen, etc., see https://dwc.tdwg.org/terms/#dwc:basisOfRecord)\nSource: DOI, or website LINK, or \"unpublished data\"\nPublished by: ORCID ID\nPublished at: TimeStamp
\n
Template 1: Biotic interaction between organisms
\n
The predicate is using the Relations Ontology (RO).
\n
The object is of the same structure as the subject (see above): OrganismID, IdentifiedAs, AccordingTo, LifeStageTemplate 2: Relation between an organism and the environment
\n
The predicate is using the Relations Ontology (RO).
\n
The object uses the ENVO ontology to list the terms of habitats.\nTemplate 3: Relation between an organism and a chemical compound
\n
The predicate is using the ……………….
\n
The subject is using……..
\n
\n
Follow-up (TK)
\n
\n
Dear Lyubo and all,
\n
Overall, this looks great. I have some smaller questions/comments below.
\n
\n\n
IdentifiedAs:TaxonNameID
\n
According to (Sec.): TaxonConceptID
\n\n
\n
What's the difference between TaxonNameID and TaxonConceptID. To me, it\nsounds like they are the same (or only one of them is needed)?
Source: DOI, or website LINK, or \"unpublished data\"
\n
\n\n
\n
Yes, we can easily add that! A variant of 7 is already implemented.
\n
But these two would be in the provenance graph, and not the publication\ninfo one.
\n
\n
Template 1: Biotic interaction between organisms
\n
\n
So you are saying we should be refering to organisms and not taxons? Or\ndo we maybe need both?
\n
I have been interpreting these in the way that statements refering to\ntaxons are meant to be more general, for example that wolves \"somewhat\nregularly\" eat rabbits, which is different form \"I saw one specific\nwolve eating one specific rabbit\". Don't we need both, of if we want to\nhave just one of them, wouldn't it rather be the more general one\ninvolving taxons?
\n
You also mentioned in the other email that you suggest to remove the\nlife cycle stages for uniformity. I think I would leave them in, at\nleast for Template 1, as they look useful for certain cases and can be\nmarked as optional. But up to you.
On Mon, Jun 12, 2023 at 3:52 PM Tobias Kuhn kuhntobias@gmail.com wrote:\nDear Lyubo and all,
\n
Overall, this looks great. I have some smaller questions/comments below.
\n
\n\n
IdentifiedAs:TaxonNameID
\n
According to (Sec.): TaxonConceptID
\n\n
\n
What's the difference between TaxonNameID and TaxonConceptID. To me, it\nsounds like they are the same (or only one of them is needed)?\nAuthors often use one and the same taxon name but according to different sources that define that name. This implies the name could have different meaning in the two cases. This is very confusing we all know this, but this is how the system works. The field \"According to\" defines the concept used for the taxon name identified in the previous field. Taxonomist understand this very well, which I can't say for (most) other biologists. Therefore I propose the following workflow to identify the taxon concept, including an instruction text for the authors:
\n
According to (Sec.):
\n
Citation of the Taxon Concept used to define the above name (entered in IdentifiedAs),\nnormally in the form of literature reference with DOI, or link to the respective treatment (TaxonConcept) at\nTreatmentBank.
\n
The list of treatments is dynamic and can be downloaded anytime from this link at TreatmentBank (see also the instructions of Guido Sautter in the comment).
\n
The system searches for the name pasted in the above field (IdentifiedAs) and yields back a list of treatments from the Treatmentbank API that relate to this name from which the user should choose.
\n
The list displays the Taxon names and the literature reference linked to each them from TreatmentBank; there can be more than one treatment per name; the user select the record from the list and the system gets the HTTP ID to that particular treatments at TreatmentBank
\n
Ideally, after a taxon name is selected in the IdentifiedAs field, the system automatically displays all available Taxon Concepts (treatments) in the AccordingTo field.
\n
In the future there will be an API built at GNUB to serve that purpose; in the meantime we used the workflow described above.
\n
What happens if no treatment (TaxonConcept) is found in the list?
\n
The user is asked to enter the literature reference (citation of authors and year, or full reference, or DOI) according to which the organism has been identified with the taxon name specified in the IdentifiedAs field.
\n
The system generates an UUID for that “missing” concept
\n
The UUID and the related Taxon Concept are harvested regularly by TreatmentBank which creates a “stab” for that missing treatment.
\n
Instruction text for the authors:
\n
“Select the Taxon Concept used to define the taxon name above. The taxon concept consists of the full names of the taxon plus the literature source, according to which the organism has been identified as belonging to a particular taxon name. If you don’t find the Taxon Concept in the list, then enter the literature reference, either as citation of authors and year, or full reference of the literature source, or article DOI.”
Source: DOI, or website LINK, or \"unpublished data\"
\n
\n\n
\n
Yes, we can easily add that! A variant of 7 is already implemented.
\n
But these two would be in the provenance graph, and not the publication\ninfo one.
\n
Sure, you know better. Sorry for this omission.
\n
\n
Template 1: Biotic interaction between organisms
\n
\n
So you are saying we should be refering to organisms and not taxons? Or\ndo we maybe need both?\nWe need both, as this kind of observation is always based on an organism or group of organisms. We are fully aware that in many cases we can't provide an ID for the organism that we have observed, however in this case we should mint an internal UUID to keep the system coherent.
\n
I have been interpreting these in the way that statements refering to\ntaxons are meant to be more general, for example that wolves \"somewhat\nregularly\" eat rabbits, which is different form \"I saw one specific\nwolve eating one specific rabbit\". Don't we need both, of if we want to\nhave just one of them, wouldn't it rather be the more general one\ninvolving taxons?
\n
For the wide public yes, they will like just a more general statement. For professional purposes to which nanopubs belong, we would need both, I am afraid.
\n
You also mentioned in the other email that you suggest to remove the\nlife cycle stages for uniformity. I think I would leave them in, at\nleast for Template 1, as they look useful for certain cases and can be\nmarked as optional. But up to you.
\n
It can be left as such, but deprecated or just made inactive in the templates it is not needed. I wouldn't take it out entirely, as it belongs to the \"general pattern\" of the subject which we are trying to unify now.
Feel free to try it out. You can select \"Example\" under \"Publication\ninfo\" if you want to test it with non-serious data.
\n
I already connected it to the Checklistbank-powered API we have set up\nfor some other biodiversity templates for the taxon IDs.
\n
Currently it will mint many new identifiers (for extract, sample,\nanalysis, feature list, feature, and annotation). I assume many of them\nshould also be filled with existing identifiers to be looked up. This\nalso depends on the workflow of when who should introduce what kinds of\nthings, and at which point who is referring back to them.
\n
There are also a number of modeling decisions we could discuss. E.g.\nwith triples like \"A enpkg:has_wd_id B\", it would modeling-wise make\nmore sense to just use B instead of A, or use a more precise relation\nlike isExtractOfTaxon. But I understand that you might have practical\nreasons for this. I'd be happy to discuss in any case.
\n
I hope that makes sense and is moving in the right direction from your\nside. Curious to hear your thoughts in any case.
\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/iaa2g392h073scg24s9ruh3.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/iaa2g392h073scg24s9ruh3.json
new file mode 100644
index 000000000000..5eead20885d4
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/iaa2g392h073scg24s9ruh3.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"iaa2g392h073scg24s9ruh3","title":"Treatment","desc":"","updated":1653577229509,"created":1653572455789,"custom":{},"fname":"data.treatment","type":"note","vault":{"fsPath":"vault"},"contentHash":"3b7dafff926955eb2b890b087c45d95a","links":[],"anchors":{"export-of-the-minimal-required-files":{"type":"header","text":"Export of the minimal required files","value":"export-of-the-minimal-required-files","line":12,"column":0,"depth":2},"rename-all-txt-to-text":{"type":"header","text":"Rename all .txt to .text","value":"rename-all-txt-to-text","line":56,"column":0,"depth":1}},"children":[],"parent":"o6r2k35gfsfur2gwgk56ra3","data":{}},"body":"
Treatment
\n
Notes taken for the organization of the DBGI pilot MS data for its intake as a graph.
\n
Export of the minimal required files
\n
\n
mgf
\n
quant table
\n
mgf sirius
\n
\n
Starting from the mzmine project
\n
use th /media/share/DBGI/{} following pattern to export with the original filename
for file in prefix*;\ndo\nmv \"file\"\"{file#XY TD-}\"\ndone
\n
and adapt (note we echo first for safety)
\n
for file in 20220513PMA*;\ndo\necho mv \"file\"\"{file##20220513PMA}\"\ndone
\n
Seems to work
\n
So we can
\n
for file in 20220513PMA*;\ndo\nmv \"file\"\"{file##20220513PMA}\"\ndone
\n
Now we are left with the extensions\nWe inspire from
\n
Rename all .txt to .text
\n
for f in *.txt; do\nmv -- \"f\"\"{f%.txt}.text\"\ndone
\n
And adapt to
\n
for f in *.mzML_chromatograms_deconvoluted_deisotoped.mgf; do\nmv -- \"f\"\"{f%.mzML_chromatograms_deconvoluted_deisotoped.mgf}_sirius_pos.mgf\"\ndone
\n
and
\n
for f in *.mzML_chromatograms_deconvoluted_deisotoped_quant.csv; do\nmv -- \"f\"\"{f%.mzML_chromatograms_deconvoluted_deisotoped_quant.csv}_features_quant_pos.csv\"\ndone
\n
Now we are left with mgf (sirius and classical)\nWe will use pattern expansion to limit our suffix editing
\n
ls DBGI01_04{001..100}_sirius_pos.mgf
\n
In fact its easier to mv all file with the sirius_pos.mg extension to a temp folder\nmv *sirius_pos.mgf sirius\nDo the substitution
\n
for f in *.mgf; do\nmv -- \"f\"\"{f%.mgf}_features_ms2_pos.mgf\"\ndone
\n
Now that we have our file we would like to create subfolder for them and move them accordingly
Adapted\nfor i in ls -ltrh directorypath| awk '{print $NF}'| awk -F \"_f|_s\" '{print $1}'| sort| uniq; do mkdir $i; yes|mv $i* $i; done
\n
Works nicely !
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/ialf7d4ig1b2fapedzvbxbb.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/ialf7d4ig1b2fapedzvbxbb.json
new file mode 100644
index 000000000000..cefa293d25aa
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/ialf7d4ig1b2fapedzvbxbb.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"ialf7d4ig1b2fapedzvbxbb","title":"2023-06-27","desc":"","updated":1687864965455,"created":1687858980981,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.06.27","type":"note","vault":{"fsPath":"vault"},"contentHash":"b69ba39c0105d2a3ac8a3c32c779c5b8","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.alecabec.2023.06.27","id":"ialf7d4ig1b2fapedzvbxbb","vaultName":"vault"},"value":"tags.create","alias":"#create","position":{"start":{"line":24,"column":1,"offset":281},"end":{"line":24,"column":8,"offset":288},"indent":[]},"xvault":false,"to":{"fname":"tags.create"}}],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":20,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":21,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":23,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":25,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":27,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":30,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":45,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":47,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":48,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":49,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":52,"column":0,"depth":2}},"children":[],"parent":"4vdnom6lqejdj7tre2evd8z","data":{}},"body":"
#create (Private) a new column with a score indicator about the similarity off the\ndef calculate_score(inchikey1, inchikey2, inchikey3):\nif inchikey1 and inchikey2 and inchikey3:\nif inchikey1 == inchikey2 == inchikey3:\nreturn 3\nelif inchikey1 == inchikey2 or inchikey1 == inchikey3 or inchikey2 == inchikey3:\nreturn 2\nelse:\nreturn 1\nelse:\nreturn 1
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/ibbfp49fyt6z7fe464e8w0d.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/ibbfp49fyt6z7fe464e8w0d.json
new file mode 100644
index 000000000000..127d88a06e05
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/ibbfp49fyt6z7fe464e8w0d.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"ibbfp49fyt6z7fe464e8w0d","title":"Devos_2007","desc":"","updated":1656059639673,"created":1656059639673,"isDir":false,"custom":{"isDir":false},"fname":"biblio.devos_2007","type":"note","vault":{"fsPath":"vault"},"contentHash":"fb2c24736a5b8dacb39cc8319f5da8f4","links":[{"type":"wiki","from":{"fname":"biblio.devos_2007","id":"ibbfp49fyt6z7fe464e8w0d","vaultName":"vault"},"value":"article","position":{"start":{"line":5,"column":14,"offset":128},"end":{"line":5,"column":25,"offset":139},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"article"}},{"type":"wiki","from":{"fname":"biblio.devos_2007","id":"ibbfp49fyt6z7fe464e8w0d","vaultName":"vault"},"value":"ric-ch-de-vos","position":{"start":{"line":6,"column":12,"offset":151},"end":{"line":6,"column":29,"offset":168},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"ric-ch-de-vos"}},{"type":"wiki","from":{"fname":"biblio.devos_2007","id":"ibbfp49fyt6z7fe464e8w0d","vaultName":"vault"},"value":"sofia-moco","position":{"start":{"line":6,"column":31,"offset":170},"end":{"line":6,"column":45,"offset":184},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"sofia-moco"}},{"type":"wiki","from":{"fname":"biblio.devos_2007","id":"ibbfp49fyt6z7fe464e8w0d","vaultName":"vault"},"value":"arjen-lommen","position":{"start":{"line":6,"column":47,"offset":186},"end":{"line":6,"column":63,"offset":202},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"arjen-lommen"}},{"type":"wiki","from":{"fname":"biblio.devos_2007","id":"ibbfp49fyt6z7fe464e8w0d","vaultName":"vault"},"value":"joost-jb-keurentjes","position":{"start":{"line":6,"column":65,"offset":204},"end":{"line":6,"column":88,"offset":227},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"joost-jb-keurentjes"}},{"type":"wiki","from":{"fname":"biblio.devos_2007","id":"ibbfp49fyt6z7fe464e8w0d","vaultName":"vault"},"value":"raoul-j-bino","position":{"start":{"line":6,"column":90,"offset":229},"end":{"line":6,"column":106,"offset":245},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"raoul-j-bino"}},{"type":"wiki","from":{"fname":"biblio.devos_2007","id":"ibbfp49fyt6z7fe464e8w0d","vaultName":"vault"},"value":"robert-d-hall","position":{"start":{"line":6,"column":108,"offset":247},"end":{"line":6,"column":125,"offset":264},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"robert-d-hall"}},{"type":"wiki","from":{"fname":"biblio.devos_2007","id":"ibbfp49fyt6z7fe464e8w0d","vaultName":"vault"},"value":"4.2007","position":{"start":{"line":7,"column":9,"offset":273},"end":{"line":7,"column":19,"offset":283},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"4.2007"}},{"type":"wiki","from":{"fname":"biblio.devos_2007","id":"ibbfp49fyt6z7fe464e8w0d","vaultName":"vault"},"value":"2022-03-01","position":{"start":{"line":8,"column":15,"offset":298},"end":{"line":8,"column":29,"offset":312},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-03-01"}},{"type":"wiki","from":{"fname":"biblio.devos_2007","id":"ibbfp49fyt6z7fe464e8w0d","vaultName":"vault"},"value":"extraction-method","position":{"start":{"line":12,"column":11,"offset":516},"end":{"line":12,"column":32,"offset":537},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"extraction-method"}},{"type":"wiki","from":{"fname":"biblio.devos_2007","id":"ibbfp49fyt6z7fe464e8w0d","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":13,"column":3,"offset":540},"end":{"line":13,"column":10,"offset":547},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio.devos_2007","id":"ibbfp49fyt6z7fe464e8w0d","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":13,"column":12,"offset":549},"end":{"line":13,"column":29,"offset":566},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio.devos_2007","id":"ibbfp49fyt6z7fe464e8w0d","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":13,"column":31,"offset":568},"end":{"line":13,"column":41,"offset":578},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}},{"from":{"fname":"Bachelor-Work-2022.methodology","id":"mpboa8wpvhpygf5fw4o9v11","vaultName":"vault"},"type":"backlink","position":{"start":{"line":38,"column":279,"offset":4214},"end":{"line":38,"column":300,"offset":4235},"indent":[]},"value":"biblio.devos_2007"}],"anchors":{"untargeted-large-scale-plant-metabolomics-using-liquid-chromatography-coupled-to-mass-spectrometry":{"type":"header","text":"Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry","value":"untargeted-large-scale-plant-metabolomics-using-liquid-chromatography-coupled-to-mass-spectrometry","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":25,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
Devos_2007
\n
Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/ihhg3osvy26wih9yn07tewx.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/ihhg3osvy26wih9yn07tewx.json
new file mode 100644
index 000000000000..6e9a1f1a2db6
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/ihhg3osvy26wih9yn07tewx.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"ihhg3osvy26wih9yn07tewx","title":"2023-03-12","desc":"","updated":1678694205756,"created":1678694160704,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.03.12","type":"note","vault":{"fsPath":"vault"},"contentHash":"f4d27a7eea4505d103c31361cbe04409","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2023.03.12","id":"ihhg3osvy26wih9yn07tewx","vaultName":"vault"},"value":"tags.foundation","alias":"#foundation","position":{"start":{"line":28,"column":1,"offset":336},"end":{"line":28,"column":12,"offset":347},"indent":[]},"xvault":false,"to":{"fname":"tags.foundation"}},{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2023.03.12","id":"ihhg3osvy26wih9yn07tewx","vaultName":"vault"},"value":"tags.association","alias":"#association","position":{"start":{"line":36,"column":1,"offset":553},"end":{"line":36,"column":13,"offset":565},"indent":[]},"xvault":false,"to":{"fname":"tags.association"}}],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":24,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":26,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":28,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":90,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":92,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":93,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":94,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":97,"column":0,"depth":2}},"children":[],"parent":"20mx26zgvnr7cc5nucidveu","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/iixu13fbgz6uivuvl06bc0f.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/iixu13fbgz6uivuvl06bc0f.json
new file mode 100644
index 000000000000..6b114a51a4c5
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/iixu13fbgz6uivuvl06bc0f.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"iixu13fbgz6uivuvl06bc0f","title":"2023-01-08","desc":"","updated":1673212828823,"created":1673192929565,"traitIds":["open-notebook-eb"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2023.01.08","type":"note","vault":{"fsPath":"vault"},"contentHash":"8541b7d941791daecc7adadcb6915880","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":16,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":18,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":20,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":26,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":28,"column":0,"depth":1}},"children":[],"parent":"rwwstq9pnk2fqonf946x951","data":{}},"body":"
2023-01-08
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2023.01.08
\n
To do
\n
done
\n
Perspectives
\n
notes
\n
Today I'll try to build a linux web server from an old comupter. This would be usefull to publish some stuff for the DBGI and EMI projects.
\n
For instance, the laptop is set up. All seems to work fine. I just have to make my own DNS and to apply a static IP address to it. I'll do that another day.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/ijpbaqnc0ewvgkwl0qq0m7e.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/ijpbaqnc0ewvgkwl0qq0m7e.json
new file mode 100644
index 000000000000..fce3740e563a
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/ijpbaqnc0ewvgkwl0qq0m7e.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.mwannier.2023.03","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345593,"created":1695629345593,"id":"ijpbaqnc0ewvgkwl0qq0m7e","desc":"","links":[],"anchors":{},"children":["kiuh4gd60gdjyen94t8o4pg","vava3y79ue4aqpjw61sgg7y","7eiph29dn4lttq8fgo3c6lw","c4oha21mmkymii0skow3ktp","rd064po8dsa3zn3qo2q2b3x","vvjl5eqh65v26cums0cmo2w","v3fdi4bdlq18my5cmlmi4rd","lkwq0wsejsaduhdkwcvpm3i","gl8u3dz9v1cnm86bqhweq3n","fc213c760vmhk0y0hpewvwe","4y3rowjuwqpbp005g82rrjb","ubj4yl08jyx6844fad17wjb","oupip73cqrjiz3xmb3nwycd","r16a9pqpiqrcfr7y0tayfqd","hng25n39yihcxfksy5fd7u9","vz859fx0v5r2l5jiwen4z5t"],"parent":"hjgld8jupnd9k7kzqe0ubra","data":{},"title":"03"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/in0js6gupq7xxkwy716c93n.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/in0js6gupq7xxkwy716c93n.json
new file mode 100644
index 000000000000..851176c4ba8a
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/in0js6gupq7xxkwy716c93n.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"in0js6gupq7xxkwy716c93n","title":"Methodooly","desc":"","updated":1687810812186,"created":1687810812186,"custom":{},"fname":"methodooly","type":"note","vault":{"fsPath":"vault"},"contentHash":"528b35acdc1850d0268a5123092a8bcc","links":[],"anchors":{},"children":[],"parent":"txkHnVTI9AawnquiublXO","data":{}},"body":"
Methodooly
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/inakqagsydtih7ls65eh3nb.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/inakqagsydtih7ls65eh3nb.json
new file mode 100644
index 000000000000..91956093fbfa
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/inakqagsydtih7ls65eh3nb.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"inakqagsydtih7ls65eh3nb","title":"2023-02-07","desc":"","updated":1675763382713,"created":1675759188056,"traitIds":["open-notebook-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.02.07","type":"note","vault":{"fsPath":"vault"},"contentHash":"0d2d551aa028e1011d3d88cd4f61ca88","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2023.02.07","id":"inakqagsydtih7ls65eh3nb","vaultName":"vault"},"value":"welcome","position":{"start":{"line":78,"column":29,"offset":1586},"end":{"line":78,"column":40,"offset":1597},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}}],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"meeting-witrh-maelle":{"type":"header","text":"Meeting witrh Maelle","value":"meeting-witrh-maelle","line":23,"column":0,"depth":3},"for-molecules-display":{"type":"header","text":"For molecules display","value":"for-molecules-display","line":35,"column":0,"depth":2},"data-sources":{"type":"header","text":"Data Sources","value":"data-sources","line":48,"column":0,"depth":2},"main-libraries-for-chemoinfo":{"type":"header","text":"main libraries for chemoinfo","value":"main-libraries-for-chemoinfo","line":52,"column":0,"depth":2},"chemical-classifiers":{"type":"header","text":"Chemical classifiers","value":"chemical-classifiers","line":57,"column":0,"depth":2},"tmap-and-fingerprints":{"type":"header","text":"TMAP and fingerprints","value":"tmap-and-fingerprints","line":63,"column":0,"depth":1},"chemical-spaces":{"type":"header","text":"Chemical spaces","value":"chemical-spaces","line":68,"column":0,"depth":1},"paused":{"type":"header","text":"Paused","value":"paused","line":80,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":82,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":84,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":89,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":91,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":92,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":93,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":96,"column":0,"depth":2}},"children":[],"parent":"g53xjv8ow93e7yy6srggzcf","data":{}},"body":"
Suggestion to improve the Welcome is to add a link to Markdown tutorials
\n
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/iq3hz5b7sskcu56bl8pgbwq.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/iq3hz5b7sskcu56bl8pgbwq.json
new file mode 100644
index 000000000000..f3f10f48895e
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/iq3hz5b7sskcu56bl8pgbwq.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"iq3hz5b7sskcu56bl8pgbwq","title":"Methodology","desc":"","updated":1688884787737,"created":1688884787737,"custom":{},"fname":"Methodology","type":"note","vault":{"fsPath":"vault"},"contentHash":"4b7ee48e2d58a02ea5c8935997682a44","links":[],"anchors":{},"children":["g9o88ewzmt71l13xi7bcwf9","vrl2ey4vuvmomo8zj14wx6u","5ny9w344zjft6o29hfrmxbx","to6lmssoye1gldz8milv2dq","kw8d33ou2rr8ypjeltuxzny"],"parent":"txkHnVTI9AawnquiublXO","data":{}},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/ivul4gk3y7gncrk8qg7phey.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/ivul4gk3y7gncrk8qg7phey.json
new file mode 100644
index 000000000000..336d5a784fcf
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/ivul4gk3y7gncrk8qg7phey.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"ivul4gk3y7gncrk8qg7phey","title":"ressources","desc":"","updated":1688884930448,"created":1688884930448,"custom":{},"fname":"BiCICKL-project.nanopublications.ressources","type":"note","vault":{"fsPath":"vault"},"contentHash":"921d66bbb5a5fedf5bd070bb7976e13a","links":[],"anchors":{},"children":["i9dvi1nopoccdz91ezhvxne","4znf32ksin5t4737lj6rbeg"],"parent":"jhi5wst259ii3b5oq2d3r0l","data":{}},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/j2l2hsespzdiqm6qlppt5pc.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/j2l2hsespzdiqm6qlppt5pc.json
new file mode 100644
index 000000000000..1ebfc869601b
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/j2l2hsespzdiqm6qlppt5pc.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.pmallard.2023.05","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345611,"created":1695629345611,"id":"j2l2hsespzdiqm6qlppt5pc","desc":"","links":[],"anchors":{},"children":["6fgl93l2jddw283yhhejmna","fjm2ss789yrtuh2n1rguf0d","mqga292fx5kuukhx66rgvh5","kmkcd9dh6zbazzexqb95cha","kl3i8ypnf1gudexruzi08qa","wxx1zeelnfzyzbhzi5yaax5"],"parent":"kdf7w680pcf9ofqywy9qgyl","data":{},"title":"05"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/j3jsdxtx10sz97uy306240h.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/j3jsdxtx10sz97uy306240h.json
new file mode 100644
index 000000000000..c2a37c459344
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/j3jsdxtx10sz97uy306240h.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"j3jsdxtx10sz97uy306240h","title":"Zulip","desc":"","updated":1678380558164,"created":1678380209978,"custom":{},"fname":"ressources.zulip","type":"note","vault":{"fsPath":"vault"},"contentHash":"8d840d9e4ad991f367e1e2584cc40321","links":[{"type":"ref","from":{"fname":"ressources.zulip","id":"j3jsdxtx10sz97uy306240h","vaultName":"vault"},"value":"meetings.2023.02.22.wrap-up","position":{"start":{"line":15,"column":1,"offset":321},"end":{"line":15,"column":53,"offset":373},"indent":[]},"xvault":false,"to":{"fname":"meetings.2023.02.22.wrap-up","anchorHeader":"communication-means"}}],"anchors":{},"children":[],"parent":"165zhtrhauww30lf9dbp8fa","data":{}},"body":"
🗒️ The Dendron workshop did not happen. Will be rescheduled.
\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/j4v04q38afih8of12i40b6r.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/j4v04q38afih8of12i40b6r.json
new file mode 100644
index 000000000000..aa711fc5fb19
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/j4v04q38afih8of12i40b6r.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.alecabec","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345557,"created":1695629345557,"id":"j4v04q38afih8of12i40b6r","desc":"","links":[],"anchors":{},"children":["s31xn7xb1bk6xuusjykyfgv"],"parent":"rw6o4yru1k43k19sz84xt6m","data":{},"title":"Alecabec"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/jb94w8oc7a9tv04izb0g544.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/jb94w8oc7a9tv04izb0g544.json
new file mode 100644
index 000000000000..1f98ff180f3d
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/jb94w8oc7a9tv04izb0g544.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.ebruelhart.2022.12","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345576,"created":1695629345576,"id":"jb94w8oc7a9tv04izb0g544","desc":"","links":[],"anchors":{},"children":["cjligh0jlzjbzgd4vpzs52n","qjst6sh69sq0jfjq6huiaes","7e5d8r3w17f3p4225ndatlu","4coqs390hba8xusek98tmsb","0lwi5tl6uvt2hurrg7ycxr0","r023k94i45yeev1um5o4hv6","l3udotv1v1raxb3qdvawp5b"],"parent":"vechu9nek0ai9pac4taotye","data":{},"title":"12"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/jhi5wst259ii3b5oq2d3r0l.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/jhi5wst259ii3b5oq2d3r0l.json
new file mode 100644
index 000000000000..c5601afebf0c
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/jhi5wst259ii3b5oq2d3r0l.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"jhi5wst259ii3b5oq2d3r0l","title":"nanopublication","desc":"","updated":1688884908240,"created":1688884908240,"custom":{},"fname":"BiCICKL-project.nanopublications","type":"note","vault":{"fsPath":"vault"},"contentHash":"2a4c1686fdb746cef9cd86e29fca9ebb","links":[],"anchors":{},"children":["ivul4gk3y7gncrk8qg7phey","nl3v8ba6dtxsuzvr7xurkv7"],"parent":"se2pzun6petcy32hf5j3wuw","data":{}},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/ji4eoxcoevr7u5beshcylgp.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/ji4eoxcoevr7u5beshcylgp.json
new file mode 100644
index 000000000000..06d8ae1e92c0
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/ji4eoxcoevr7u5beshcylgp.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"ji4eoxcoevr7u5beshcylgp","title":"Shibata_2013","desc":"","updated":1656059639673,"created":1656059639673,"isDir":false,"custom":{"isDir":false},"fname":"biblio.shibata_2013","type":"note","vault":{"fsPath":"vault"},"contentHash":"3344e42fefdc5fecb8c965c4c0b40a8b","links":[{"type":"wiki","from":{"fname":"biblio.shibata_2013","id":"ji4eoxcoevr7u5beshcylgp","vaultName":"vault"},"value":"article","position":{"start":{"line":5,"column":14,"offset":144},"end":{"line":5,"column":25,"offset":155},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"article"}},{"type":"wiki","from":{"fname":"biblio.shibata_2013","id":"ji4eoxcoevr7u5beshcylgp","vaultName":"vault"},"value":"atsuko-shibata","position":{"start":{"line":6,"column":12,"offset":167},"end":{"line":6,"column":30,"offset":185},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"atsuko-shibata"}},{"type":"wiki","from":{"fname":"biblio.shibata_2013","id":"ji4eoxcoevr7u5beshcylgp","vaultName":"vault"},"value":"0.2013","position":{"start":{"line":7,"column":9,"offset":194},"end":{"line":7,"column":19,"offset":204},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"0.2013"}},{"type":"wiki","from":{"fname":"biblio.shibata_2013","id":"ji4eoxcoevr7u5beshcylgp","vaultName":"vault"},"value":"2022-03-30","position":{"start":{"line":8,"column":15,"offset":219},"end":{"line":8,"column":29,"offset":233},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-03-30"}},{"type":"wiki","from":{"fname":"biblio.shibata_2013","id":"ji4eoxcoevr7u5beshcylgp","vaultName":"vault"},"value":"extraction-method","position":{"start":{"line":10,"column":11,"offset":269},"end":{"line":10,"column":32,"offset":290},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"extraction-method"}},{"type":"wiki","from":{"fname":"biblio.shibata_2013","id":"ji4eoxcoevr7u5beshcylgp","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":11,"column":3,"offset":293},"end":{"line":11,"column":10,"offset":300},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio.shibata_2013","id":"ji4eoxcoevr7u5beshcylgp","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":11,"column":12,"offset":302},"end":{"line":11,"column":29,"offset":319},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio.shibata_2013","id":"ji4eoxcoevr7u5beshcylgp","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":11,"column":31,"offset":321},"end":{"line":11,"column":41,"offset":331},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}}],"anchors":{"optimising-the-protocols-for-making-large-scale-collections-of-silica-gel-dried-material-for-phylogenetics-studies":{"type":"header","text":"Optimising the Protocols for Making Large Scale Collections of Silica gel dried material for Phylogenetics studies","value":"optimising-the-protocols-for-making-large-scale-collections-of-silica-gel-dried-material-for-phylogenetics-studies","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"abstract":{"type":"header","text":"Abstract","value":"abstract","line":22,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":27,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
Shibata_2013
\n
Optimising the Protocols for Making Large Scale Collections of Silica gel dried material for Phylogenetics studies
In the last twenty years, it has become common practice in the field to collect plant material for DNA studies in addition to herbarium specimens. By far the most widely used method is to preserve the material by placing it directly into the silica gel (ziplock method). However with the advent of high throughput molecular projects such as barcoding and a general move towards ‘collecting everything’ for molecular studies, the number of samples being collected has risen sharply. This has both cost and time implications for expeditions. In recent years collectors have moved towards collecting material for DNA studies into teabags which in turn are stored in silica gel. The teabag method is more convenient, less time consuming and more cost effective than the ziplock method. However there have been cases where material preserved using the teabag method has failed to yield DNA which is of a high enough quality and quantity to use in molecular studies. As such, the teabag method is considered by some to be inferior to collecting material using the ziplock method.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/jivkfmfjowhi82dgigqp7vy.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/jivkfmfjowhi82dgigqp7vy.json
new file mode 100644
index 000000000000..92c5b6a2d9f0
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/jivkfmfjowhi82dgigqp7vy.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.commons.pmallard","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345557,"created":1695629345557,"id":"jivkfmfjowhi82dgigqp7vy","desc":"","links":[],"anchors":{},"children":["suu6tvd8mg243bnkeiam1ac"],"parent":"1vo69r0qd207hj0y9fonld1","data":{},"title":"Pmallard"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/jj89v4nh02m729y6re4si5y.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/jj89v4nh02m729y6re4si5y.json
new file mode 100644
index 000000000000..892958143451
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/jj89v4nh02m729y6re4si5y.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"jj89v4nh02m729y6re4si5y","title":"2023-09-01","desc":"","updated":1693579354178,"created":1693547904117,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.09.01","type":"note","vault":{"fsPath":"vault"},"contentHash":"8766650969229c7aec1a2340ae3b412c","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2023.09.01","id":"jj89v4nh02m729y6re4si5y","vaultName":"vault"},"value":"emi-semantic-model","position":{"start":{"line":16,"column":1,"offset":224},"end":{"line":16,"column":23,"offset":246},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"emi-semantic-model"}},{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2023.09.01","id":"jj89v4nh02m729y6re4si5y","vaultName":"vault"},"value":"emi-semantic-model","position":{"start":{"line":18,"column":38,"offset":285},"end":{"line":18,"column":60,"offset":307},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"emi-semantic-model"}},{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2023.09.01","id":"jj89v4nh02m729y6re4si5y","vaultName":"vault"},"value":"user.pma","alias":"@pma","position":{"start":{"line":87,"column":1,"offset":3120},"end":{"line":87,"column":5,"offset":3124},"indent":[]},"xvault":false,"to":{"fname":"user.pma"}}],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":55,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":57,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":59,"column":0,"depth":2},"discussion-with-donat":{"type":"header","text":"Discussion with Donat","value":"discussion-with-donat","line":61,"column":0,"depth":3},"phytochem":{"type":"header","text":"Phytochem","value":"phytochem","line":77,"column":0,"depth":4},"chat-with-unine-communication":{"type":"header","text":"Chat with UniNe communication","value":"chat-with-unine-communication","line":143,"column":0,"depth":3},"schemaorg-vs-skos":{"type":"header","text":"Schema.org vs. SKOS","value":"schemaorg-vs-skos","line":165,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":199,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":201,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":202,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":203,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":206,"column":0,"depth":2}},"children":[],"parent":"3gtlbi2k7w3yr100owwky6q","data":{}},"body":"
The Semantic Sensor Network (SSN) ontology is an ontology for describing sensors and their observations, the involved procedures, the studied features of interest, the samples used to do so, and the observed properties, as well as actuators. SSN follows a horizontal and vertical modularization architecture by including a lightweight but self-contained core ontology called SOSA (Sensor, Observation, Sample, and Actuator) for its elementary classes and properties. With their different scope and different degrees of axiomatization, SSN and SOSA are able to support a wide range of applications and use cases, including satellite imagery, large-scale scientific monitoring, industrial and household infrastructures, social sensing, citizen science, observation-driven ontology engineering, and the Web of Things. Both ontologies are described below, and examples of their usage are given.
Gökçen, O.A., Morgan, D.E., Dani, F.R., Agosti,D., Wehner, R., 2002. Dufour gl contents of ants of the Cataglyphisbicolor group. Journal of Chemical Ecology 28 (1), 71-87.
Discussion with XXXX ? Ask Manu on the EMI project
\n
\"A la une\" Université de Neuchatel
\n
Projet Sinergia qui se termine (Herbiers de Rousseau)\nFOCUS + pendant pour le futur
\n
Dies Academicus.
\n
\n
\n
Matthieu Avenzzi directeur du centre de dialectologie
\n
\n
\n
Mention de l'heritage de Augustin Pyramus de Candolle
\n
\n
\n
\n
Chris kahlemayer
\n
\n
NCCR Plant Survival
\n
Schema.org vs. SKOS
\n
Deviated on another ChatGPT query :
\n
Please briefly describe Schema.org and SKOS and resume what are they similarities and differences.
\n
\n
Schema.org:
\n
\n
Schema.org is a collaborative project by major search engines like Google, Bing, Yahoo, and others.
\n
It provides a structured vocabulary (set of terms and definitions) to describe content on the web.
\n
It's mainly used for marking up web pages so that search engines can understand and display content more effectively in search results. For example, it helps in displaying rich snippets, which are enhanced search results with additional information like ratings and event details.
\n
Schema.org is primarily used for enhancing the visibility of web content in search results and for providing structured data on web pages.
\n
\n
SKOS (Simple Knowledge Organization System):
\n
\n
SKOS is a widely used standard for organizing and representing knowledge, particularly for creating and managing controlled vocabularies, taxonomies, and thesauri.
\n
It's designed to help people and software systems to organize and navigate complex sets of information by defining relationships and concepts in a structured way.
\n
SKOS is used in various domains, including libraries, cultural heritage institutions, and information management, to create and manage controlled vocabularies.
\n
It's focused on knowledge organization and management, making it easier to categorize and retrieve information.
\n
\n
Similarities:
\n\n
\n
Semantic Structure: Both Schema.org and SKOS provide a structured way to describe and organize information. They use defined terms and relationships to create a semantic structure.
\n
\n
\n
Interoperability: Both standards aim to enhance the interoperability of data and information. They help systems and applications understand and process data consistently.
\n
\n
\n
Web Integration: While their primary purposes differ, both Schema.org and SKOS can be used on the web. Schema.org is more focused on enhancing the presentation of web content in search results, while SKOS helps in organizing knowledge on the web.
\n
\n\n
Differences:
\n\n
\n
Primary Purpose: The primary purpose of Schema.org is to enhance the visibility and presentation of web content in search engine results. In contrast, SKOS is primarily used for organizing knowledge and creating controlled vocabularies.
\n
\n
\n
Domain of Use: Schema.org is mainly used in the context of web content, websites, and search engine optimization. SKOS, on the other hand, is used in a broader range of domains, including libraries, cultural heritage institutions, and knowledge management.
\n
\n
\n
Granularity: Schema.org terms are often more granular and specific, focusing on describing web content elements like products, events, and reviews. SKOS, on the other hand, is used to create broader taxonomies and thesauri, organizing knowledge into hierarchies of concepts.
\n
\n\n
In summary, Schema.org is primarily for enhancing web content visibility, while SKOS is for organizing knowledge and creating controlled vocabularies. Both standards use structured semantics but have different domains of application and granularity in terms of the information they represent.
\n
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/jt9t67bhkzob768o2zk1b52.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/jt9t67bhkzob768o2zk1b52.json
new file mode 100644
index 000000000000..e6feea99d65c
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/jt9t67bhkzob768o2zk1b52.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"jt9t67bhkzob768o2zk1b52","title":"_b","desc":"","updated":1656059639672,"created":1656059639672,"isDir":false,"custom":{"isDir":false},"fname":"biblio._b","type":"note","vault":{"fsPath":"vault"},"contentHash":"f83485dbb60fdfe7e847c2e694182411","links":[{"type":"wiki","from":{"fname":"biblio._b","id":"jt9t67bhkzob768o2zk1b52","vaultName":"vault"},"value":"webpage","position":{"start":{"line":5,"column":14,"offset":47},"end":{"line":5,"column":25,"offset":58},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"webpage"}},{"type":"wiki","from":{"fname":"biblio._b","id":"jt9t67bhkzob768o2zk1b52","vaultName":"vault"},"value":"2022-03-31","position":{"start":{"line":6,"column":15,"offset":73},"end":{"line":6,"column":29,"offset":87},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-03-31"}},{"type":"wiki","from":{"fname":"biblio._b","id":"jt9t67bhkzob768o2zk1b52","vaultName":"vault"},"value":"gnss-location","position":{"start":{"line":9,"column":11,"offset":207},"end":{"line":9,"column":28,"offset":224},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"gnss-location"}},{"type":"wiki","from":{"fname":"biblio._b","id":"jt9t67bhkzob768o2zk1b52","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":10,"column":3,"offset":227},"end":{"line":10,"column":10,"offset":234},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio._b","id":"jt9t67bhkzob768o2zk1b52","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":10,"column":12,"offset":236},"end":{"line":10,"column":29,"offset":253},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio._b","id":"jt9t67bhkzob768o2zk1b52","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":10,"column":31,"offset":255},"end":{"line":10,"column":41,"offset":265},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}}],"anchors":{"rtklib-documents":{"type":"header","text":"RTKLIB: Documents","value":"rtklib-documents","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":22,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/jw4pq186ky5v60f1xrk9z84.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/jw4pq186ky5v60f1xrk9z84.json
new file mode 100644
index 000000000000..b4829fe8684b
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/jw4pq186ky5v60f1xrk9z84.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"jw4pq186ky5v60f1xrk9z84","title":"Wp2","desc":"","updated":1677088734437,"created":1676137552017,"custom":{},"fname":"meetings.2023.02.22.program.notes.wp2","type":"note","vault":{"fsPath":"vault"},"contentHash":"68f40badc8c2f38859a5181f9385580c","links":[{"from":{"fname":"meetings.2023.02.22.program","id":"33r62tekbrtckkfadan4kwj","vaultName":"vault"},"type":"backlink","position":{"start":{"line":79,"column":1,"offset":2462},"end":{"line":79,"column":43,"offset":2504},"indent":[]},"value":"meetings.2023.02.22.program.notes.wp2"}],"anchors":{"what-do-we-have-":{"type":"header","text":"What do we have ?","value":"what-do-we-have-","line":10,"column":0,"depth":3},"physical-objects":{"type":"header","text":"Physical objects","value":"physical-objects","line":12,"column":0,"depth":4},"digital-objects":{"type":"header","text":"Digital objects","value":"digital-objects","line":18,"column":0,"depth":4},"what-do-we-want-":{"type":"header","text":"What do we want ?","value":"what-do-we-want-","line":41,"column":0,"depth":3},"physical-objects-1":{"type":"header","text":"Physical objects","value":"physical-objects-1","line":43,"column":0,"depth":4},"digital-objects-1":{"type":"header","text":"Digital objects","value":"digital-objects-1","line":50,"column":0,"depth":4},"openbis":{"type":"header","text":"OpenBIS","value":"openbis","line":66,"column":0,"depth":2}},"children":[],"parent":"9676i362aou4xnjhjczonjx","data":{}},"body":"
Wp2
\n
Henry, Catarina, Bernd, Ming, Maelle, Edouard
\n
What do we have ?
\n
Physical objects
\n
- living specimens (look trough the window !)\n- dried tissues collections (bring Tubes)\n- extracts (Tubes)\n- fridges\n
\n
Digital objects
\n
- Species list. We had a quick talk with https://botalista.community/ people.\n- iNat. The DBGI iNat project https://www.inaturalist.org/projects/digital-botanical-gardens-initiative\n
\n
We cant use the iNat API (because we have non-research grade observation - cultivated specimens)
\n
See examples of DBGI iNat entries curated by others :
Think of a way to capture these community curated entries and forward then to the implicated botanical gardens.
\n
- Directus (http://directus.dbgi.org/) Have a quick tour.\n- MassIVE (several set uploaded e.g. https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=bd2a519b678e4f92aeca6434166ea548, https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=589f0793f15d4b87aebd699900ad468e)\nFor long term consider other MasSpec repositories. (Metabolights https://www.ebi.ac.uk/metabolights/) Others ?\n\n\n- Physical samples tracking: none at the moment.\n
\n
What do we want ?
\n
Physical objects
\n
- living specimens (look trough the window) - Could this improve ? How ?\n- dried tissues collections (Falcon Tubes) - Could this improve ? How ?\n- extracts (Tubes) - Could this improve ? How ?\n- fridges () - Could this improve ? How ?\n
\n
Digital objects
\n
- Species list\n- iNat\n- Directus\n- MassIVE. Are they new developments /recommendations on this side ? GNPS2 ?\n- Physical samples tracking\n
If we take the directus example, it is hosted on a computer of the COMMONS Lab at UniFr and can only be accessed through the UniFr VPN.\nShould we buy / rent another machine to ease external access ?\nIf so where ? Which specifications ?
\n
OpenBIS
\n
A workshop is to be planned in the next month. In the first 15 days of March. Doodle to be send by Henry and Caterina\nPhysical / remote\nHalf a day to get started.\nObjectives :
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/jxf9j6qjoqn1msh4kpck98s.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/jxf9j6qjoqn1msh4kpck98s.json
new file mode 100644
index 000000000000..a94f2634d235
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/jxf9j6qjoqn1msh4kpck98s.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"jxf9j6qjoqn1msh4kpck98s","title":"2023-06-05","desc":"","updated":1686057318011,"created":1685953230243,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.06.05","type":"note","vault":{"fsPath":"vault"},"contentHash":"4864fbdede0f91f746b7ce47d9a55357","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"todo-browse-whole-dataset":{"type":"header","text":"TODO Browse whole dataset","value":"todo-browse-whole-dataset","line":21,"column":0,"depth":3},"code":{"type":"header","text":"CODE","value":"code","line":37,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":39,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":41,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":66,"column":0,"depth":2}},"children":[],"parent":"0rjtydgu2hme3vo7hu0vkj8","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/jz4rehjqyefpaaer58w9r6t.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/jz4rehjqyefpaaer58w9r6t.json
new file mode 100644
index 000000000000..2a1653bf026b
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/jz4rehjqyefpaaer58w9r6t.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"jz4rehjqyefpaaer58w9r6t","title":"Br00ksm3t4l_","desc":"","updated":1656059639673,"created":1656059639673,"isDir":false,"custom":{"isDir":false},"fname":"biblio.br00ksm3t4l_","type":"note","vault":{"fsPath":"vault"},"contentHash":"b8567a057d3c41e396bc2899f1b3a4e3","links":[{"type":"wiki","from":{"fname":"biblio.br00ksm3t4l_","id":"jz4rehjqyefpaaer58w9r6t","vaultName":"vault"},"value":"webpage","position":{"start":{"line":5,"column":14,"offset":60},"end":{"line":5,"column":25,"offset":71},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"webpage"}},{"type":"wiki","from":{"fname":"biblio.br00ksm3t4l_","id":"jz4rehjqyefpaaer58w9r6t","vaultName":"vault"},"value":"br00ksm3t4l","position":{"start":{"line":6,"column":12,"offset":83},"end":{"line":6,"column":27,"offset":98},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"br00ksm3t4l"}},{"type":"wiki","from":{"fname":"biblio.br00ksm3t4l_","id":"jz4rehjqyefpaaer58w9r6t","vaultName":"vault"},"value":"2022-03-31","position":{"start":{"line":7,"column":15,"offset":113},"end":{"line":7,"column":29,"offset":127},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-03-31"}},{"type":"wiki","from":{"fname":"biblio.br00ksm3t4l_","id":"jz4rehjqyefpaaer58w9r6t","vaultName":"vault"},"value":"gnss-location","position":{"start":{"line":10,"column":11,"offset":297},"end":{"line":10,"column":28,"offset":314},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"gnss-location"}},{"type":"wiki","from":{"fname":"biblio.br00ksm3t4l_","id":"jz4rehjqyefpaaer58w9r6t","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":11,"column":3,"offset":317},"end":{"line":11,"column":10,"offset":324},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio.br00ksm3t4l_","id":"jz4rehjqyefpaaer58w9r6t","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":11,"column":12,"offset":326},"end":{"line":11,"column":29,"offset":343},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio.br00ksm3t4l_","id":"jz4rehjqyefpaaer58w9r6t","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":11,"column":31,"offset":345},"end":{"line":11,"column":41,"offset":355},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}}],"anchors":{"sub-centimeter-gps-with-rtklib":{"type":"header","text":"Sub Centimeter GPS With RTKLIB","value":"sub-centimeter-gps-with-rtklib","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"abstract":{"type":"header","text":"Abstract","value":"abstract","line":20,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":25,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
Sub Centimeter GPS With RTKLIB: I recently had the need for a very accurate and precise positioning system, but had a hard time finding one. So I figured I'd share my discovery here so everyone will know centimeter or decimeter accuracy is easily within reach.I plan to use this wi…
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/jzn6u4pja1t36gkddonsl65.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/jzn6u4pja1t36gkddonsl65.json
new file mode 100644
index 000000000000..36b1a24dcec9
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/jzn6u4pja1t36gkddonsl65.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"jzn6u4pja1t36gkddonsl65","title":"Ebruelhart","desc":"","updated":1676013878277,"created":1676013878277,"custom":{},"fname":"templates.open-notebook.dbgi.ebruelhart","type":"note","vault":{"fsPath":"vault"},"contentHash":"35b96f70dd7db9b4c072e1e17aa9a78b","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":7,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":11,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":13,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":15,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":17,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":19,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":21,"column":0,"depth":1}},"children":[],"parent":"b51e1k7qbe6jj1quhxnag04","data":{}},"body":"
Ebruelhart
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is {{ CURRENT_YEAR }}.{{ CURRENT_MONTH }}.{{ CURRENT_DAY }}
\n
To do
\n
done
\n
Perspectives
\n
notes
\n
code
\n
links
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/k1podevswt9ww6fu8pm77tt.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/k1podevswt9ww6fu8pm77tt.json
new file mode 100644
index 000000000000..a3fd59ac2483
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/k1podevswt9ww6fu8pm77tt.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.lschwegler.2023.04","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345585,"created":1695629345585,"id":"k1podevswt9ww6fu8pm77tt","desc":"","links":[],"anchors":{},"children":["scrvlmljfpp35qlu37jheid","ezg68f5twnkrve9wvblip8r","ohl18eg8zyw9wmdn4uhbpg2","5pf2tb36csimke3supwk4dr","n59webexsilqctwdfq5tn21","v57fgljw7emcgezmwiqok4e","p1jodv6f6kzp9d5pwg4i2jw","ezeh53k8zz3r8pnj53epigc"],"parent":"2jubmyun9qey56cyfo8q9zy","data":{},"title":"04"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/k2s5qmelth38zu4oh7cwqtp.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/k2s5qmelth38zu4oh7cwqtp.json
new file mode 100644
index 000000000000..d8a53eff3fa2
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/k2s5qmelth38zu4oh7cwqtp.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"k2s5qmelth38zu4oh7cwqtp","title":"Bakula_2022","desc":"","updated":1656059639672,"created":1656059639672,"isDir":false,"custom":{"isDir":false},"fname":"biblio.bakula_2022","type":"note","vault":{"fsPath":"vault"},"contentHash":"af1544723d681d056def92bf6aec76b3","links":[{"type":"wiki","from":{"fname":"biblio.bakula_2022","id":"k2s5qmelth38zu4oh7cwqtp","vaultName":"vault"},"value":"article","position":{"start":{"line":5,"column":14,"offset":129},"end":{"line":5,"column":25,"offset":140},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"article"}},{"type":"wiki","from":{"fname":"biblio.bakula_2022","id":"k2s5qmelth38zu4oh7cwqtp","vaultName":"vault"},"value":"mieczysław-bakuła","position":{"start":{"line":6,"column":12,"offset":152},"end":{"line":6,"column":33,"offset":173},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"mieczysław-bakuła"}},{"type":"wiki","from":{"fname":"biblio.bakula_2022","id":"k2s5qmelth38zu4oh7cwqtp","vaultName":"vault"},"value":"marcin-uradziński","position":{"start":{"line":6,"column":35,"offset":175},"end":{"line":6,"column":56,"offset":196},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"marcin-uradziński"}},{"type":"wiki","from":{"fname":"biblio.bakula_2022","id":"k2s5qmelth38zu4oh7cwqtp","vaultName":"vault"},"value":"kamil-krasuski","position":{"start":{"line":6,"column":58,"offset":198},"end":{"line":6,"column":76,"offset":216},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"kamil-krasuski"}},{"type":"wiki","from":{"fname":"biblio.bakula_2022","id":"k2s5qmelth38zu4oh7cwqtp","vaultName":"vault"},"value":"2022.1","position":{"start":{"line":7,"column":9,"offset":225},"end":{"line":7,"column":19,"offset":235},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022.1"}},{"type":"wiki","from":{"fname":"biblio.bakula_2022","id":"k2s5qmelth38zu4oh7cwqtp","vaultName":"vault"},"value":"2022-03-31","position":{"start":{"line":8,"column":15,"offset":250},"end":{"line":8,"column":29,"offset":264},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-03-31"}},{"type":"wiki","from":{"fname":"biblio.bakula_2022","id":"k2s5qmelth38zu4oh7cwqtp","vaultName":"vault"},"value":"gnss-location","position":{"start":{"line":12,"column":11,"offset":453},"end":{"line":12,"column":28,"offset":470},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"gnss-location"}},{"type":"wiki","from":{"fname":"biblio.bakula_2022","id":"k2s5qmelth38zu4oh7cwqtp","vaultName":"vault"},"value":"tags.DGPS","alias":"#DGPS","position":{"start":{"line":13,"column":9,"offset":479},"end":{"line":13,"column":14,"offset":484},"indent":[]},"xvault":false,"to":{"fname":"tags.DGPS"}},{"type":"wiki","from":{"fname":"biblio.bakula_2022","id":"k2s5qmelth38zu4oh7cwqtp","vaultName":"vault"},"value":"tags.GPS-smartphone-positioning","alias":"#GPS-smartphone-positioning","position":{"start":{"line":13,"column":16,"offset":486},"end":{"line":13,"column":43,"offset":513},"indent":[]},"xvault":false,"to":{"fname":"tags.GPS-smartphone-positioning"}},{"type":"wiki","from":{"fname":"biblio.bakula_2022","id":"k2s5qmelth38zu4oh7cwqtp","vaultName":"vault"},"value":"tags.least-squares-adjustment","alias":"#least-squares-adjustment","position":{"start":{"line":13,"column":45,"offset":515},"end":{"line":13,"column":70,"offset":540},"indent":[]},"xvault":false,"to":{"fname":"tags.least-squares-adjustment"}},{"type":"wiki","from":{"fname":"biblio.bakula_2022","id":"k2s5qmelth38zu4oh7cwqtp","vaultName":"vault"},"value":"tags.P","alias":"#P","position":{"start":{"line":13,"column":72,"offset":542},"end":{"line":13,"column":74,"offset":544},"indent":[]},"xvault":false,"to":{"fname":"tags.P"}},{"type":"wiki","from":{"fname":"biblio.bakula_2022","id":"k2s5qmelth38zu4oh7cwqtp","vaultName":"vault"},"value":"tags.P","alias":"#P","position":{"start":{"line":13,"column":80,"offset":550},"end":{"line":13,"column":82,"offset":552},"indent":[]},"xvault":false,"to":{"fname":"tags.P"}},{"type":"wiki","from":{"fname":"biblio.bakula_2022","id":"k2s5qmelth38zu4oh7cwqtp","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":13,"column":88,"offset":558},"end":{"line":13,"column":95,"offset":565},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio.bakula_2022","id":"k2s5qmelth38zu4oh7cwqtp","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":13,"column":97,"offset":567},"end":{"line":13,"column":114,"offset":584},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio.bakula_2022","id":"k2s5qmelth38zu4oh7cwqtp","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":13,"column":116,"offset":586},"end":{"line":13,"column":126,"offset":596},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}}],"anchors":{"performance-of-dgps-smartphone-positioning-with-the-use-of-pl1-vs-pl5-pseudorange-measurements":{"type":"header","text":"Performance of DGPS Smartphone Positioning with the Use of P(L1) vs. P(L5) Pseudorange Measurements","value":"performance-of-dgps-smartphone-positioning-with-the-use-of-pl1-vs-pl5-pseudorange-measurements","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"abstract":{"type":"header","text":"Abstract","value":"abstract","line":24,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":29,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
Bakula_2022
\n
Performance of DGPS Smartphone Positioning with the Use of P(L1) vs. P(L5) Pseudorange Measurements
This paper presents numerical analyzes of code differential GPS positioning with the use of two Huawei P30 Pro mobile phones. Code observations on L1 and L5 frequencies were chosen for DGPS positioning analysis. For project purposes, we additionally used one high-class geodetic GNSS receiver (Javad Alpha) acting as a reference station. Smartphones were placed at the same distance of 0.5 m from the reference receiver. Such a close distance was specially planned by the authors in order to achieve identical observation conditions. Thus, it was possible to compare the DGPS positioning accuracy using the same satellites and the P(L1) and P(L5) code only, for single observation epochs and for sequential DGPS adjustment. Additionally, the precision of observations of the second differences in the observations P(L1) and P(L5) was analyzed. In general, the use of the P(L5) code to derive DGPS positions has made it possible to significantly increase the accuracy with respect to the positions derived using the P(L1) code. Average errors of horizontal and vertical coordinates were about 60–80% lower for the DGPS solution using the P(L5) code than using the P(L1) code. Based on the simulated statistical analyses, an accuracy of about 0.4 m (3D) with 16 satellites may be obtained using a smartphone with P(L5) code. An accuracy of about 0.3 m (3D) can be achieved with 26 satellites.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/k75suoydmrafnd5wl2tar2u.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/k75suoydmrafnd5wl2tar2u.json
new file mode 100644
index 000000000000..e3ff06446aee
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/k75suoydmrafnd5wl2tar2u.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345548,"created":1695629345548,"id":"k75suoydmrafnd5wl2tar2u","desc":"","links":[{"from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"type":"backlink","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"value":"open-notebook"}],"anchors":{},"children":["rw6o4yru1k43k19sz84xt6m","1vo69r0qd207hj0y9fonld1"],"parent":"txkHnVTI9AawnquiublXO","data":{},"title":"Open Notebook"},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/kc3mm3rc1fmmb3vzmjlh97r.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/kc3mm3rc1fmmb3vzmjlh97r.json
new file mode 100644
index 000000000000..4ace1a09226f
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/kc3mm3rc1fmmb3vzmjlh97r.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"database.tutorial","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345547,"created":1695629345547,"id":"kc3mm3rc1fmmb3vzmjlh97r","desc":"","links":[],"anchors":{},"children":["2gpzh1s85imdp4ig17g5ccj","xfo9r506ukemq0r2191kqkl"],"parent":"o2psjwj00vl4m8d7rgyfk9f","data":{},"title":"Tutorial"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/kc7cc1lgen7049um6b9vb1q.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/kc7cc1lgen7049um6b9vb1q.json
new file mode 100644
index 000000000000..757dd51ecc2c
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/kc7cc1lgen7049um6b9vb1q.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.alecabec.2023.04","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345557,"created":1695629345557,"id":"kc7cc1lgen7049um6b9vb1q","desc":"","links":[],"anchors":{},"children":["dpyvo19kstsgofapbpkjlx0","z38tri6wkk7srwczdzxqcrg","6f9wvdo0z5a36t1f365gdr5","rltu335hfod26bbbcgbt7co","mn44v5c7fa6f4qqoz117s8k","0vmlfdyfcb6leokids8p9ak","ueqdl22uvswqqk0k53iftqv","u9oouu4kv2hvljpxhx7oqhh"],"parent":"s31xn7xb1bk6xuusjykyfgv","data":{},"title":"04"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/kce3yv1v6lcse3zuvmb9hfz.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/kce3yv1v6lcse3zuvmb9hfz.json
new file mode 100644
index 000000000000..967b5216e89c
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/kce3yv1v6lcse3zuvmb9hfz.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"kce3yv1v6lcse3zuvmb9hfz","title":"2023-03-16","desc":"","updated":1678988754555,"created":1678968706665,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.03.16","type":"note","vault":{"fsPath":"vault"},"contentHash":"51247c7c06671c3b86d9ce13d15f1d95","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"meeting-ruch-donat":{"type":"header","text":"Meeting Ruch Donat","value":"meeting-ruch-donat","line":25,"column":0,"depth":3},"paused":{"type":"header","text":"Paused","value":"paused","line":134,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":136,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":138,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":147,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":149,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":150,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":151,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":154,"column":0,"depth":2}},"children":[],"parent":"20mx26zgvnr7cc5nucidveu","data":{}},"body":"
If somebody on your side would have a couple of hours to look at the articles and see, whether a journal has one style over the last 20 years, or when the style changed, that would also be helpful.
Could be useful for stock of samples in freezer and injection on the Vanquish.\nRemoves the step of getting out each of the samples and replacing in the trays.
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/kdf7w680pcf9ofqywy9qgyl.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/kdf7w680pcf9ofqywy9qgyl.json
new file mode 100644
index 000000000000..9c3f74e656d7
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/kdf7w680pcf9ofqywy9qgyl.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.pmallard.2023","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345607,"created":1695629345607,"id":"kdf7w680pcf9ofqywy9qgyl","desc":"","links":[],"anchors":{},"children":["gky6rxw7vmzh944puduevsa","g53xjv8ow93e7yy6srggzcf","20mx26zgvnr7cc5nucidveu","v0029honfl4v4m4tyoy8ul1","j2l2hsespzdiqm6qlppt5pc","8duum2njm3z1sm4nnvgy93s","vvcscq2gtvhdsmtmbqfqjqb","9gjxhmy8g78ehub7udeszxy","3gtlbi2k7w3yr100owwky6q"],"parent":"p9fzf7a60ileod5188l7y3h","data":{},"title":"2023"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/kdqbwl7mqgcpks5yv8yi9kf.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/kdqbwl7mqgcpks5yv8yi9kf.json
new file mode 100644
index 000000000000..baea6d0bea3a
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/kdqbwl7mqgcpks5yv8yi9kf.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"templates","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345545,"created":1695629345545,"id":"kdqbwl7mqgcpks5yv8yi9kf","desc":"","links":[],"anchors":{},"children":["q4tfhn8lnlx20enhro8ly4y","3r5uxl0tc0s1tp7tvlixz24","h2fwooifcd7lzne5fojsniv"],"parent":"txkHnVTI9AawnquiublXO","data":{},"title":"Templates"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/kg9bdpnhc0ozycix5asi1fg.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/kg9bdpnhc0ozycix5asi1fg.json
new file mode 100644
index 000000000000..047e9ccfb387
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/kg9bdpnhc0ozycix5asi1fg.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"kg9bdpnhc0ozycix5asi1fg","title":"ground-control-points","desc":"","updated":1655990310235,"created":1655970704287,"custom":{},"fname":"Bachelor-Work-2022.methodology.ground-control-points","type":"note","vault":{"fsPath":"vault"},"contentHash":"73cbd54ff0f0df67fc2f19a668fa448b","links":[],"anchors":{},"children":[],"parent":"mpboa8wpvhpygf5fw4o9v11","data":{}},"body":"
ground-control-points
\n
The ID corresponds to the number of the ground control points, X and Y correspond to the horizontal position under CH1903+/LV95 projection and Z corresponds to the elevation in meters.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/khvagputmfl3gro5zswusl1.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/khvagputmfl3gro5zswusl1.json
new file mode 100644
index 000000000000..1e5cff73c8ac
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/khvagputmfl3gro5zswusl1.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"khvagputmfl3gro5zswusl1","title":"Setup","desc":"","updated":1676998849311,"created":1672177489546,"custom":{},"fname":"open-notebook.dbgi.setup","type":"note","vault":{"fsPath":"vault"},"contentHash":"bff856064bfc82b2c1d65644057795d2","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.setup","id":"khvagputmfl3gro5zswusl1","vaultName":"vault"},"value":"templates.open-notebook-pmallard","position":{"start":{"line":60,"column":27,"offset":1955},"end":{"line":60,"column":63,"offset":1991},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"templates.open-notebook-pmallard"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":42,"column":118,"offset":1734},"end":{"line":42,"column":146,"offset":1762},"indent":[]},"value":"open-notebook.dbgi.setup"},{"from":{"fname":"open-notebook.dbgi.pmallard.2022.11.03","id":"66jqbal9euipagyvgmctw48","vaultName":"vault"},"type":"backlink","position":{"start":{"line":52,"column":1,"offset":1150},"end":{"line":52,"column":29,"offset":1178},"indent":[]},"value":"open-notebook.dbgi.setup"},{"from":{"fname":"open-notebook.dbgi.pmallard.2022.12.27","id":"pavm24gkbkhlul1izg1yjtk","vaultName":"vault"},"type":"backlink","position":{"start":{"line":32,"column":15,"offset":867},"end":{"line":32,"column":43,"offset":895},"indent":[]},"value":"open-notebook.dbgi.setup"},{"from":{"fname":"open-notebook.dbgi.pmallard.2023.01.13","id":"gm75s8kkf5ma494mkful592","vaultName":"vault"},"type":"backlink","position":{"start":{"line":19,"column":1,"offset":347},"end":{"line":19,"column":29,"offset":375},"indent":[]},"value":"open-notebook.dbgi.setup"},{"from":{"fname":"meetings.2023.02.22.program.notes.open-science","id":"f1b58fewgynd36i6voll7gc","vaultName":"vault"},"type":"backlink","position":{"start":{"line":24,"column":49,"offset":681},"end":{"line":24,"column":77,"offset":709},"indent":[]},"value":"open-notebook.dbgi.setup"}],"anchors":{"defining-a-note-trait-for-daily-logs":{"type":"header","text":"Defining a Note trait for daily logs","value":"defining-a-note-trait-for-daily-logs","line":11,"column":0,"depth":3},"set-the-notes-trait":{"type":"header","text":"Set the Notes trait","value":"set-the-notes-trait","line":18,"column":0,"depth":4},"edit-the-template":{"type":"header","text":"Edit the template.","value":"edit-the-template","line":63,"column":0,"depth":4},"set-a-keyboard-shortcut":{"type":"header","text":"Set a keyboard shortcut","value":"set-a-keyboard-shortcut","line":69,"column":0,"depth":4}},"children":[],"parent":"rw6o4yru1k43k19sz84xt6m","data":{}},"body":"
Create a new Note Trait\nRun the command Dendron: Configure Note Traits. Give your new trait a unique name. In this example, we'll call the trait open-notebook-pma. Hit Enter and a open-notebook-pma.js file will appear in your editor. This is where you define your custom trait logic.
\n
\n
\n
Add the trait behavior\nAdd in Javascript code to have custom settings when creating the note name and the note title.
\n
\n\n
Here we used
\n
module.exports={\n OnWillCreate:{\n /**\n * This example sets a prefix of 'planning', and then adds a date hierarchy\n * using the luxon module.\n */\n setNameModifier(){\n // This example sets a prefix of 'planning', and then adds a date\n // hierarchy using the luxon module.\n return{\n name:\"open-notebook-dbgi.pma.\"+ luxon.DateTime.local().toFormat(\"yyyy.MM.dd\"),\n promptUserForModification:true,\n };\n },\n },\n OnCreate:{\n setTitle(props){\n // This example will use the currentNoteName property, extract the\n // yyyy.MM.dd date portion of the note name, and then reformat it with\n // dashes.\n return props.currentNoteName.split(\".\").slice(-3).join(\"-\");\n },\n /**\n * Apply a template to each note. NOTE: If you want to use this code, you\n * will need a note file called `templates.planning-template.md` in your\n * Dendron workspace.\n */\n setTemplate:()=>{\n return\"templates.open-notebook-pma\";\n },\n },\n};\n
\n
Edit the template.
\n
You can (optionally) have a template for your journal notes.\nHere I used the following templates.open-notebook-pmallard (Private).\nThis template can be modified according to your needs.
\n
Set a keyboard shortcut
\n
I added a keyboard shortcut for it. But this needs to be done locally in your VSCode preferences (its not part of the published Dendron)\nFor this you can
\n\n
Run the VSCode Command Preferences: Open Keyboard Shortcuts (JSON) (Cmd+Shift + P)
\n
Add the following entry to the bottom of your keybindings.json file, with the shortcut key combo of your choice:\n{\n\"key\": \"cmd+o cmd+n\",\n\"command\": \"dendron.customCommand.open-notebook-pmallard\"\n}
\n\n
I have created additional traits for DBGI members. You should find yours :) Else please ask.
\n
They are called, respectively :
\n
\n
open-notebook-acsima.js
\n
open-notebook-bmulhauser.js
\n
open-notebook-brinn.js
\n
open-notebook-cdessimoz.js
\n
open-notebook-dagosti.js
\n
open-notebook-dmietchen.js
\n
open-notebook-ebruelhart.js
\n
open-notebook-edefossez.js
\n
open-notebook-ewillighagen.js
\n
open-notebook-gkozlowski.js
\n
open-notebook-hluetcke.js
\n
open-notebook-jgalgonek.js
\n
open-notebook-mwang.js
\n
open-notebook-mwannier.js
\n
open-notebook-nalvarez.js
\n
open-notebook-pcudremauroux.js
\n
open-notebook-pmallard.js
\n
open-notebook-tmendes.js
\n
\n
Adapt your keyboard shortcuts so that it leads to your own note traits.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/kiuh4gd60gdjyen94t8o4pg.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/kiuh4gd60gdjyen94t8o4pg.json
new file mode 100644
index 000000000000..a52c1c8a2c7a
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/kiuh4gd60gdjyen94t8o4pg.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"kiuh4gd60gdjyen94t8o4pg","title":"2023-03-01","desc":"","updated":1677679947590,"created":1677655804452,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.03.01","type":"note","vault":{"fsPath":"vault"},"contentHash":"223afaf3e78af1f4d4f4451d0eaff8e4","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"tmap":{"type":"header","text":"tmap","value":"tmap","line":27,"column":0,"depth":3},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":31,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":35,"column":0,"depth":2}},"children":[],"parent":"ijpbaqnc0ewvgkwl0qq0m7e","data":{}},"body":"
needs python < 3.10 \nDon't understand how to use it ...
\n
TODO NEXT
\n
Important for redaction
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/kl3i8ypnf1gudexruzi08qa.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/kl3i8ypnf1gudexruzi08qa.json
new file mode 100644
index 000000000000..ae1a20d23dc6
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/kl3i8ypnf1gudexruzi08qa.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"kl3i8ypnf1gudexruzi08qa","title":"2023-05-12","desc":"","updated":1683888298890,"created":1683887068416,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.05.12","type":"note","vault":{"fsPath":"vault"},"contentHash":"577aaa8c20196d8257cb8997c438084e","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"point-edouard-plugin-qfield":{"type":"header","text":"Point edouard plugin Qfield","value":"point-edouard-plugin-qfield","line":24,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":38,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":40,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":42,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":44,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":46,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":47,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":48,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":51,"column":0,"depth":2}},"children":[],"parent":"j2l2hsespzdiqm6qlppt5pc","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/kmkcd9dh6zbazzexqb95cha.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/kmkcd9dh6zbazzexqb95cha.json
new file mode 100644
index 000000000000..031023e97153
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/kmkcd9dh6zbazzexqb95cha.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"kmkcd9dh6zbazzexqb95cha","title":"2023-05-08","desc":"","updated":1691500641638,"created":1683524942967,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.05.08","type":"note","vault":{"fsPath":"vault"},"contentHash":"ce09f1a19ce441ad7e0e5147dbd5aa64","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"call-with-luca":{"type":"header","text":"Call with Luca","value":"call-with-luca","line":24,"column":0,"depth":3},"intro-on-emidbgi":{"type":"header","text":"Intro on EMI/DBGI","value":"intro-on-emidbgi","line":53,"column":0,"depth":3},"q":{"type":"header","text":"Q","value":"q","line":57,"column":0,"depth":3},"compute-the-embedding":{"type":"header","text":"Compute the embedding","value":"compute-the-embedding","line":73,"column":2,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":302,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":304,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":306,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":309,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":311,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":312,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":313,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":316,"column":0,"depth":2}},"children":[],"parent":"j2l2hsespzdiqm6qlppt5pc","data":{}},"body":"
Why is it important to detect isomorphic node groups ?\nWhat is a connected holdout ?
\n
\n
Compute the embedding
\n
Next, we compute the embedding using the First-order LINE method. Do note that this implementation is a data-race aware one that uses SGD as optimizer, and nothing fancy like ADAM or NADAM: this means that the memory footprint is only limited to the embedding size.
What is Node Embedding?\nNode embedding is a technique used in machine learning to represent nodes in a graph as feature vectors in a low-dimensional space. Node embeddings capture the structural information of the graph by preserving the similarity between nodes based on their connectivity patterns. These embeddings can be used as input features to various downstream machine learning tasks such as node classification, link prediction, or clustering.
\n
Convert .ttl to any tab separated files
\n
Def diameter of a graph
\n
\n
longest of the shortest paths.
\n
\n
Centrality metrics
\n
\n
get number of square
\n
get number triangle
\n
\n
\n
get the clustering coeeficient\nevaluates the density of the graph
\n
\n
graph sketches ~ hash\nvery fast topological representation
\n
FirstOrderLINEEnsmallen >> SPINE
\n
Historical tracking of the evolution of a graph\nTomoso Fontana\nwebgraph (to be integrated in grape)\ndatastructure > succint representation of a graph\nedges > sub-byte space massive compression to the graph\ncan always be converted back to the original structures
Parameters\n----------\nnode_type_path: Optional[str]\n The path to the file with the unique node type names.\nnode_type_list_separator: Optional[str]\n The separator to use for the node types file. Note that if this is not provided, one will be automatically detected among the following`: comma, semi-column, tab and space.\nnode_types_column_number: Optional[int]\n The number of the column of the node types file from where to load the node types.\nnode_types_column: Optional[str]\n The name of the column of the node types file from where to load the node types.\nnode_types_number: Optional[int]\n The number of the unique node types. This will be used in order to allocate the correct size for the data structure.\nnumeric_node_type_ids: Optional[bool]\n Whether the node type names should be loaded as numeric values, i.e. casted from string to a numeric representation.\nminimum_node_type_id: Optional[int]\n The minimum node type ID to be used when using numeric node type IDs.\nnode_type_list_header: Optional[bool]\n Whether the node type file has an header.\nnode_type_list_support_balanced_quotes: Optional[bool]\n Whether to support balanced quotes.\nnode_type_list_rows_to_skip: Optional[int]\n The number of lines to skip in the node types file`: the header is already skipped if it has been specified that the file has an header.\nnode_type_list_is_correct: Optional[bool]\n Whether the node types file can be assumed to be correct, i.e. does not have something wrong in it. If this parameter is passed as true on a malformed file, the constructor will crash.\nnode_type_list_max_rows_number: Optional[int]\n The maximum number of lines to be loaded from the node types file.\nnode_type_list_comment_symbol: Optional[str]\n The comment symbol to skip lines in the node types file. Lines starting with this symbol will be skipped.\nload_node_type_list_in_parallel: Optional[bool]\n Whether to load the node type list in parallel. Note that when loading in parallel, the internal order of the node type IDs may result changed across different iterations. We are working to get this to be stable.\nnode_path: Optional[str]\n The path to the file with the unique node names.\nnode_list_separator: Optional[str]\n The separator to use for the nodes file. Note that if this is not provided, one will be automatically detected among the following`: comma, semi-column, tab and space.\nnode_list_header: Optional[bool]\n Whether the nodes file has an header.\nnode_list_support_balanced_quotes: Optional[bool]\n Whether to support balanced quotes.\nnode_list_rows_to_skip: Optional[int]\n Number of rows to skip in the node list file.\nnode_list_is_correct: Optional[bool]\n Whether the nodes file can be assumed to be correct, i.e. does not have something wrong in it. If this parameter is passed as true on a malformed file, the constructor will crash.\nnode_list_max_rows_number: Optional[int]\n The maximum number of lines to be loaded from the nodes file.\nnode_list_comment_symbol: Optional[str]\n The comment symbol to skip lines in the nodes file. Lines starting with this symbol will be skipped.\ndefault_node_type: Optional[str]\n The node type to be used when the node type for a given node in the node file is None.\nnodes_column_number: Optional[int]\n The number of the column of the node file from where to load the node names.\nnodes_column: Optional[str]\n The name of the column of the node file from where to load the node names.\nnode_types_separator: Optional[str]\n The node types separator.\nnode_list_node_types_column_number: Optional[int]\n The number of the column of the node file from where to load the node types.\nnode_list_node_types_column: Optional[str]\n The name of the column of the node file from where to load the node types.\nnode_ids_column: Optional[str]\n The name of the column of the node file from where to load the node IDs.\nnode_ids_column_number: Optional[int]\n The number of the column of the node file from where to load the node IDs\nnodes_number: Optional[int]\n The expected number of nodes. Note that this must be the EXACT number of nodes in the graph.\nminimum_node_id: Optional[int]\n The minimum node ID to be used, when loading the node IDs as numerical.\nnumeric_node_ids: Optional[bool]\n Whether to load the numeric node IDs as numeric.\nnode_list_numeric_node_type_ids: Optional[bool]\n Whether to load the node types IDs in the node file to be numeric.\nskip_node_types_if_unavailable: Optional[bool]\n Whether to skip the node types without raising an error if these are unavailable.\nload_node_list_in_parallel: Optional[bool]\n Whether to load the node list in parallel. When loading in parallel, without node IDs, the nodes may not be loaded in a deterministic order.\nedge_type_path: Optional[str]\n The path to the file with the unique edge type names.\nedge_types_column_number: Optional[int]\n The number of the column of the edge types file from where to load the edge types.\nedge_types_column: Optional[str]\n The name of the column of the edge types file from where to load the edge types.\nedge_types_number: Optional[int]\n The number of the unique edge types. This will be used in order to allocate the correct size for the data structure.\nnumeric_edge_type_ids: Optional[bool]\n Whether the edge type names should be loaded as numeric values, i.e. casted from string to a numeric representation.\nminimum_edge_type_id: Optional[int]\n The minimum edge type ID to be used when using numeric edge type IDs.\nedge_type_list_separator: Optional[str]\n The separator to use for the edge type list. Note that, if None is provided, one will be attempted to be detected automatically between ';', ',', tab or space.\nedge_type_list_header: Optional[bool]\n Whether the edge type file has an header.\nedge_type_list_support_balanced_quotes: Optional[bool]\n Whether to support balanced quotes while reading the edge type list.\nedge_type_list_rows_to_skip: Optional[int]\n Number of rows to skip in the edge type list file.\nedge_type_list_is_correct: Optional[bool]\n Whether the edge types file can be assumed to be correct, i.e. does not have something wrong in it. If this parameter is passed as true on a malformed file, the constructor will crash.\nedge_type_list_max_rows_number: Optional[int]\n The maximum number of lines to be loaded from the edge types file.\nedge_type_list_comment_symbol: Optional[str]\n The comment symbol to skip lines in the edge types file. Lines starting with this symbol will be skipped.\nload_edge_type_list_in_parallel: Optional[bool]\n Whether to load the edge type list in parallel. When loading in parallel, without edge type IDs, the edge types may not be loaded in a deterministic order.\nedge_path: Optional[str]\n The path to the file with the edge list.\nedge_list_separator: Optional[str]\n The separator to use for the edge list. Note that, if None is provided, one will be attempted to be detected automatically between ';', ',', tab or space.\nedge_list_header: Optional[bool]\n Whether the edges file has an header.\nedge_list_support_balanced_quotes: Optional[bool]\n Whether to support balanced quotes while reading the edge list.\nedge_list_rows_to_skip: Optional[int]\n Number of rows to skip in the edge list file.\nsources_column_number: Optional[int]\n The number of the column of the edges file from where to load the source nodes.\nsources_column: Optional[str]\n The name of the column of the edges file from where to load the source nodes.\ndestinations_column_number: Optional[int]\n The number of the column of the edges file from where to load the destinaton nodes.\ndestinations_column: Optional[str]\n The name of the column of the edges file from where to load the destinaton nodes.\nedge_list_edge_types_column_number: Optional[int]\n The number of the column of the edges file from where to load the edge types.\nedge_list_edge_types_column: Optional[str]\n The name of the column of the edges file from where to load the edge types.\ndefault_edge_type: Optional[str]\n The edge type to be used when the edge type for a given edge in the edge file is None.\nweights_column_number: Optional[int]\n The number of the column of the edges file from where to load the edge weights.\nweights_column: Optional[str]\n The name of the column of the edges file from where to load the edge weights.\ndefault_weight: Optional[float]\n The edge weight to be used when the edge weight for a given edge in the edge file is None.\nedge_ids_column: Optional[str]\n The name of the column of the edges file from where to load the edge IDs.\nedge_ids_column_number: Optional[int]\n The number of the column of the edges file from where to load the edge IDs.\nedge_list_numeric_edge_type_ids: Optional[bool]\n Whether to load the edge type IDs as numeric from the edge list.\nedge_list_numeric_node_ids: Optional[bool]\n Whether to load the edge node IDs as numeric from the edge list.\nskip_weights_if_unavailable: Optional[bool]\n Whether to skip the weights without raising an error if these are unavailable.\nskip_edge_types_if_unavailable: Optional[bool]\n Whether to skip the edge types without raising an error if these are unavailable.\nedge_list_is_complete: Optional[bool]\n Whether to consider the edge list as complete, i.e. the edges are presented in both directions when loading an undirected graph.\nedge_list_may_contain_duplicates: Optional[bool]\n Whether the edge list may contain duplicates. If the edge list surely DOES NOT contain duplicates, a validation step may be skipped. By default, it is assumed that the edge list may contain duplicates.\nedge_list_is_sorted: Optional[bool]\n Whether the edge list is sorted. Note that a sorted edge list has the minimal memory peak, but requires the nodes number and the edges number.\nedge_list_is_correct: Optional[bool]\n Whether the edges file can be assumed to be correct, i.e. does not have something wrong in it. If this parameter is passed as true on a malformed file, the constructor will crash.\nedge_list_max_rows_number: Optional[int]\n The maximum number of lines to be loaded from the edges file.\nedge_list_comment_symbol: Optional[str]\n The comment symbol to skip lines in the edges file. Lines starting with this symbol will be skipped.\nedges_number: Optional[int]\n The expected number of edges. Note that this must be the EXACT number of edges in the graph.\nload_edge_list_in_parallel: Optional[bool]\n Whether to load the edge list in parallel. Note that, if the edge IDs indices are not given, it is NOT possible to load a sorted edge list. Similarly, when loading in parallel, without edge IDs, the edges may not be loaded in a deterministic order.\nremove_chevrons: Optional[bool]\n Whether remove chevrons while reading elements.\nremove_spaces: Optional[bool]\n Whether remove spaces while reading elements.\nverbose: Optional[bool]\n Whether to show a loading bar while reading the files. Note that, if parallel loading is enabled, loading bars will not be showed because they are a synchronization bottleneck.\nmay_have_singletons: Optional[bool]\n Whether the graph may be expected to have singleton nodes. If it is said that it surely DOES NOT have any, it will allow for some speedups and lower mempry peaks.\nmay_have_singleton_with_selfloops: Optional[bool]\n Whether the graph may be expected to have singleton nodes with selfloops. If it is said that it surely DOES NOT have any, it will allow for some speedups and lower mempry peaks.\ndirected: bool\n Whether to load the graph as directed or undirected.\nname: Optional[str]\n The name of the graph to be loaded.\n\n \n
\n
Paused
\n
Done
\n
Notes
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/kpf9zs71io037d9pc13w2ky.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/kpf9zs71io037d9pc13w2ky.json
new file mode 100644
index 000000000000..b4ba619d874a
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/kpf9zs71io037d9pc13w2ky.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.mwannier.2023.05","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345601,"created":1695629345601,"id":"kpf9zs71io037d9pc13w2ky","desc":"","links":[],"anchors":{},"children":["1q243ek7squ2wi7kdahksyu","wgog1f2a62k1jkbw3pb2wh9","6racx5phy5ohu14wqgf61jg","2y3etse4wjguvncmojsq64a","uc2gvgvs3w3x21efqvjf9fc","bcdutsnvngmqeo3jyevkidh","e48em11j2ijjn7k83zulxj1","w0ve4zdth2mrxb9jl8b9b8y","pwgi25wmjyo2lw342x3npi6","wmb1zpcibrhc5tds4234mpu","qep2u49twhwjo60ml379xu1","5uozvp7b1csls1plu2kpdih","5m89bxbrz8zq1eyf42ssl1u"],"parent":"hjgld8jupnd9k7kzqe0ubra","data":{},"title":"05"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/ktof6hozo4e81z55ub2z0ey.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/ktof6hozo4e81z55ub2z0ey.json
new file mode 100644
index 000000000000..b77cd63b7358
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/ktof6hozo4e81z55ub2z0ey.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"ktof6hozo4e81z55ub2z0ey","title":"2023-04-25","desc":"","updated":1682451368676,"created":1682429591210,"traitIds":["open-notebook-ebruelhart"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2023.04.25","type":"note","vault":{"fsPath":"vault"},"contentHash":"52a1a6bcbae15f9ce2d268d013de6855","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":16,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":18,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":20,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":26,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":28,"column":0,"depth":1}},"children":[],"parent":"tdh4km6qoyitvdxue4dqxlp","data":{}},"body":"
2023-04-25
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2023.04.25
\n
To do
\n
done
\n
Perspectives
\n
notes
\n
The automatization of pictures import is on a good way. Since now, I could construct an automated pathway that checks every project where a dedicated user (created for the automatization) is part of, downloads all the .gpkg and .jpg present on each, converts the .gpkg in .csv to read the informations about, converts the coordinates, whatever is the CRS source, in coordinates compatible with iNaturalist. I'll post this code later, when the process will be all done (because the code may change).
\n
The metadata edition is fast working. I just have a subfolder problem (can't add a subfolder level in the path to the csv file that contains the dbgi code and the coordinates to assign to the pictures metadata). But it's finished for today. I will manage that tomorrow or thursday.
\n
code
\n
links
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/kw8d33ou2rr8ypjeltuxzny.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/kw8d33ou2rr8ypjeltuxzny.json
new file mode 100644
index 000000000000..394c424ad395
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/kw8d33ou2rr8ypjeltuxzny.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"kw8d33ou2rr8ypjeltuxzny","title":"Sample Tracking","desc":"","updated":1652954448284,"created":1650384872179,"custom":{},"fname":"methodology.sample-tracking","type":"note","vault":{"fsPath":"vault"},"contentHash":"de387cf3f3a7ae23e086363f5d730442","links":[{"from":{"fname":"open-notebook.dbgi.pmallard.2022.12.28","id":"pjuvmnjrhj2hn3d796m0hrs","vaultName":"vault"},"type":"backlink","position":{"start":{"line":30,"column":38,"offset":467},"end":{"line":30,"column":69,"offset":498},"indent":[]},"value":"methodology.sample-tracking"}],"anchors":{},"children":["4exd51dppbtw62p1oekjcry"],"parent":"iq3hz5b7sskcu56bl8pgbwq","data":{}},"body":"
Sample Tracking
\n
We need to think about the problematic of sample tracking trough vial/eppendorf and other containers which will be used in our labas and others.\nIdeally a lightweight system that wouldn't imply the deployment of a heavy LIMS.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/kwkq4jyak1qs8xg2nicjes0.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/kwkq4jyak1qs8xg2nicjes0.json
new file mode 100644
index 000000000000..9fe0ffa423b7
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/kwkq4jyak1qs8xg2nicjes0.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"kwkq4jyak1qs8xg2nicjes0","title":"Bachelor-Work-2023","desc":"","updated":1678368270730,"created":1677161024406,"custom":{},"fname":"Bachelor-Work-2023","type":"note","vault":{"fsPath":"vault"},"contentHash":"e4f8b2004bc6f9783e9e149afb177489","links":[],"anchors":{"title":{"type":"header","text":"Title","value":"title","line":7,"column":0,"depth":1}},"children":["n8f8u3ozin3et4pvtgt16h9"],"parent":"txkHnVTI9AawnquiublXO","data":{}},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/kxewm1dcs9lx6tziiyp0fvr.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/kxewm1dcs9lx6tziiyp0fvr.json
new file mode 100644
index 000000000000..046d3fb38b95
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/kxewm1dcs9lx6tziiyp0fvr.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"kxewm1dcs9lx6tziiyp0fvr","title":"2023-04-13","desc":"","updated":1681370232473,"created":1681370232473,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.04.13","type":"note","vault":{"fsPath":"vault"},"contentHash":"58716f25dfc15cd81d97c31f1b711d14","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":25,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":29,"column":0,"depth":2}},"children":[],"parent":"n0racr7o73zkdsyfvpomj9y","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/l1igcmwkz1opj486gatuniu.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/l1igcmwkz1opj486gatuniu.json
new file mode 100644
index 000000000000..12038fc48ecb
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/l1igcmwkz1opj486gatuniu.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"l1igcmwkz1opj486gatuniu","title":"2","desc":"","updated":1679639080211,"created":1679639080211,"custom":{},"fname":"workshops.2023.03.28","type":"note","vault":{"fsPath":"vault"},"contentHash":"4b1bc447b0a8f9a44e2c60295270df93","links":[],"anchors":{},"children":["scwf8yap0lpao69iti1h1l7"],"parent":"f4lffu00dnmut291yvfk5w9","data":{}},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/l1k3nb5om402b83cp1fheud.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/l1k3nb5om402b83cp1fheud.json
new file mode 100644
index 000000000000..758a708ce820
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/l1k3nb5om402b83cp1fheud.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"l1k3nb5om402b83cp1fheud","title":"2023-02-27","desc":"","updated":1677506078364,"created":1677482878736,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.02.27","type":"note","vault":{"fsPath":"vault"},"contentHash":"2c48572cff7459ebe6bc309ae94b00e4","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":18,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":20,"column":0,"depth":2},"integrating-scatterplot-with-3d-molecule-structures-in-existing-dash-app":{"type":"header","text":"Integrating scatterplot with 3D molecule structures in existing Dash app","value":"integrating-scatterplot-with-3d-molecule-structures-in-existing-dash-app","line":22,"column":0,"depth":3},"gnps-dashboard":{"type":"header","text":"GNPS dashboard","value":"gnps-dashboard","line":25,"column":0,"depth":3},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":32,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":36,"column":0,"depth":2}},"children":[],"parent":"3q0f349eurhhy0r6e1to0d2","data":{}},"body":"
2023-02-27
\n
This is Maëlle's DBGI daily open-notebook.
\n
Today is 2023.02.27
\n
TODO
\n
CODE
\n
NOTES
\n
Integrating scatterplot with 3D molecule structures in existing Dash app
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/l3udotv1v1raxb3qdvawp5b.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/l3udotv1v1raxb3qdvawp5b.json
new file mode 100644
index 000000000000..0fa31b0a31d1
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/l3udotv1v1raxb3qdvawp5b.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"l3udotv1v1raxb3qdvawp5b","title":"2022-12-24","desc":"","updated":1671895547225,"created":1671885454820,"traitIds":["open-notebook-eb"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2022.12.24","type":"note","vault":{"fsPath":"vault"},"contentHash":"e85d0b989ebc5b6071f0f17c238cf934","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":24,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":28,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":30,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":32,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":34,"column":0,"depth":1}},"children":[],"parent":"jb94w8oc7a9tv04izb0g544","data":{}},"body":"
2022-12-24
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2022.12.24
\n
To do
\n
\n
\n
Relabel the falcon with the bigger labels
\n
\n
\n
Try to host correctly the dbgi maps with geoserver
\n
\n
\n
Prepare the inserts for the mass spec analysis
\n
\n
\n
Optimize the communication between QGIS and iNaturalist
\n
\n
\n
done
\n
I finally succeeded to publish the map with geoserver in WMS format. However, I didn't find yet how to make it available for all. For now, I can only see the map with the computer that hosts the map. In addition, I didn't find how to publish the map directly on dendron. For now, it has to pass via a link, that is not so good. It would be better to directly have the map on dendron.
\n
Perspectives
\n
notes
\n
code
\n
links
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/l5hk8footuy2893u4zi6yvs.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/l5hk8footuy2893u4zi6yvs.json
new file mode 100644
index 000000000000..3f245a0982d5
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/l5hk8footuy2893u4zi6yvs.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"l5hk8footuy2893u4zi6yvs","title":"Basics","desc":"","updated":1687526360164,"created":1671713381437,"custom":{},"fname":"database.tutorial.directus.Basics","type":"note","vault":{"fsPath":"vault"},"contentHash":"d49b002ba54496995f8d0b3de3df8108","links":[{"type":"ref","from":{"fname":"database.tutorial.directus.Basics","id":"l5hk8footuy2893u4zi6yvs","vaultName":"vault"},"value":"database.tutorial.postgres","position":{"start":{"line":29,"column":33,"offset":1706},"end":{"line":29,"column":86,"offset":1759},"indent":[]},"xvault":false,"to":{"fname":"database.tutorial.postgres","anchorHeader":"connect-to-postgresql"}},{"type":"ref","from":{"fname":"database.tutorial.directus.Basics","id":"l5hk8footuy2893u4zi6yvs","vaultName":"vault"},"value":"database.tutorial.postgres","position":{"start":{"line":30,"column":33,"offset":1792},"end":{"line":30,"column":93,"offset":1852},"indent":[]},"xvault":false,"to":{"fname":"database.tutorial.postgres","anchorHeader":"restart-the-sequence-padding"}},{"from":{"fname":"Methodology.wetlab","id":"vrl2ey4vuvmomo8zj14wx6u","vaultName":"vault"},"type":"backlink","position":{"start":{"line":29,"column":47,"offset":1005},"end":{"line":29,"column":84,"offset":1042},"indent":[]},"value":"database.tutorial.directus.Basics"},{"from":{"fname":"open-notebook.dbgi.alecabec.2023.05.04","id":"eskkdd6xy9vcwqs4ckd84fz","vaultName":"vault"},"type":"backlink","position":{"start":{"line":52,"column":47,"offset":1278},"end":{"line":52,"column":84,"offset":1315},"indent":[]},"value":"database.tutorial.directus.Basics"}],"anchors":{"explore-the-tables":{"type":"header","text":"Explore the tables","value":"explore-the-tables","line":8,"column":0,"depth":2},"how-to-add-items-to-the-samples-table":{"type":"header","text":"How to add items to the samples table","value":"how-to-add-items-to-the-samples-table","line":15,"column":0,"depth":2},"redo-sequence":{"type":"header","text":"redo sequence","value":"redo-sequence","line":32,"column":0,"depth":3},"change-password":{"type":"header","text":"Change password","value":"change-password","line":39,"column":0,"depth":2}},"children":[],"parent":"2gpzh1s85imdp4ig17g5ccj","data":{}},"body":"
Basics
\n
Explore the tables
\n
The data can be explored by going in the 'content' section (Cube on the module bar). The tables are listed on the left. \nBy clicking on one item, one can navigate through all the values of that one item. Some tables are read-only mode (e.g. Pyinat) and others can be edited (e.g. Samples). \nOne can search for a particular item on the top right part and add a filter to see only items of interest.
\n
The data can be visualized with other layouts (e.g. map) than the table one by changing the layout options on the right menu.
\n
How to add items to the samples table
\n\n
\n
Copy the Google sheet template:\n\nOr export the table as a csv from directus:\n\n
\n
\n
\n
Fill the template with your data (no need to add the dbgi_spl_id,user_created,date_created,user_updated,date_updated - it is autoincremented)\n
\n
\n
\n
Save the file in a COMMA separated csv file
\n
\n
\n
Import the data on directus\n
\n
\n\n
redo sequence
\n
If one does a mistake and needs to get back in the incremantation of the emi_external_id:
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/l6q4u73d01xqilb5qvle9ga.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/l6q4u73d01xqilb5qvle9ga.json
new file mode 100644
index 000000000000..6a5e518f09e0
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/l6q4u73d01xqilb5qvle9ga.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"l6q4u73d01xqilb5qvle9ga","title":"2023-04-14","desc":"","updated":1681475584876,"created":1681473813463,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.04.14","type":"note","vault":{"fsPath":"vault"},"contentHash":"df8757d11b56c87a9adf7c3eea1d9495","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":42,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":44,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":46,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":48,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":50,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":51,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":52,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":55,"column":0,"depth":2}},"children":[],"parent":"v0029honfl4v4m4tyoy8ul1","data":{}},"body":"
Dear Pierre-Marie Allard,\nThank you for submitting your proposal for a collection to Research Ideas and Outcomes: Digital Botanical Gardens Initiative outcomes
\n
The proposal will be evaluated by the Journal's editors and you will be informed about its acceptance or rejection.
\n\n
Research Ideas and Outcomes\nEditorial Office\nriojournal.com
\n
\n
Paused
\n
Done
\n
Notes
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/lc3lmnctd0ah057akmurkuq.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/lc3lmnctd0ah057akmurkuq.json
new file mode 100644
index 000000000000..f5ecef0aef82
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/lc3lmnctd0ah057akmurkuq.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"lc3lmnctd0ah057akmurkuq","title":"2023-04-25","desc":"","updated":1682421315524,"created":1682421281228,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.04.25","type":"note","vault":{"fsPath":"vault"},"contentHash":"94f74d600feb15fe3124de0b708e2cd5","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":24,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":26,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":28,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":35,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":37,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":38,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":39,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":42,"column":0,"depth":2}},"children":[],"parent":"v0029honfl4v4m4tyoy8ul1","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/le5x6ln21yurr25bs38rahb.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/le5x6ln21yurr25bs38rahb.json
new file mode 100644
index 000000000000..2cf0ccd420ab
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/le5x6ln21yurr25bs38rahb.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"le5x6ln21yurr25bs38rahb","title":"2023-03-29","desc":"","updated":1680117076843,"created":1680072314948,"traitIds":["open-notebook-lschwegler"],"custom":{},"fname":"open-notebook.dbgi.lschwegler.2023.03.29","type":"note","vault":{"fsPath":"vault"},"contentHash":"5702cef0ff90dbfa57ed8bb01fbf3d62","links":[],"anchors":{"this-is-lenditas-dbgi-daily-open-notebook":{"type":"header","text":"This is Lendita's DBGI daily open-notebook.","value":"this-is-lenditas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":23,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":25,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":27,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":37,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":39,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":40,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":41,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":44,"column":0,"depth":2}},"children":[],"parent":"fvmwxnhp9vq9cdbnjkn6slr","data":{}},"body":"
After a little search to find someone to fetch the samples from the freezer in the lab, everything went well. Everything worked with the freeze-dryer and I am excited and really hopeful that the samples will all be really dry. I'm still a bit sceptical as there are some really thick succulents underneath.\nI'll continue with the collection straight away, as I really want to be finished with the succulent and cactus greenhouse by the end of my Bachelor's project on 1 June 2023.\nNow I just have to look for liquid nitrogen, because there are delivery problems at the moment...\nAs a temporary solution, ice is now the substitute for liquid nitrogen. I simply had to put the samples in the freezer after 20 minutes.
\n
Edouard and I went shopping for tape this afternoon. So I taped the QR code labels to the tubes, otherwise they would come off after being in the freezer.
\n
It wasn't easy with the collection today because I had a few plants with big spines.
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/lkwq0wsejsaduhdkwcvpm3i.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/lkwq0wsejsaduhdkwcvpm3i.json
new file mode 100644
index 000000000000..1b26cb282687
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/lkwq0wsejsaduhdkwcvpm3i.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"lkwq0wsejsaduhdkwcvpm3i","title":"2023-03-14","desc":"","updated":1678807637600,"created":1678781244582,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.03.14","type":"note","vault":{"fsPath":"vault"},"contentHash":"eed0fe4d3bb03d4ed2d1ccfa344299a1","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":25,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":27,"column":0,"depth":2},"openbis-workshop":{"type":"header","text":"openBIS workshop","value":"openbis-workshop","line":29,"column":0,"depth":3},"databricks":{"type":"header","text":"databricks","value":"databricks","line":32,"column":0,"depth":3},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":36,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":40,"column":0,"depth":2}},"children":[],"parent":"ijpbaqnc0ewvgkwl0qq0m7e","data":{}},"body":"
If you have a large DataFrame and want to optimize the performance of your search function, there are a few things you can do:
\n
Use vectorized operations instead of loops: In general, it's faster to use vectorized operations on a pandas DataFrame than to iterate over each row or column. For example, you can use the apply() method to apply a function to each element of a DataFrame column, or the str.contains() method to search for a pattern in a DataFrame column.\n\nUse regular expressions carefully: Regular expressions can be powerful, but they can also be slow if the pattern is complex or the data is large. If possible, use simpler patterns that can be matched efficiently.\n\nUse indexing: If you're searching for matches in a DataFrame column, you can use indexing to speed up the search. For example, if you know that a column is sorted, you can use binary search to quickly find the range of rows that match your search pattern.\n\nUse parallel processing: If your machine has multiple cores, you can use parallel processing to speed up the search. For example, you can split the DataFrame into chunks and process each chunk in parallel using the multiprocessing module.\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/lmex82qnbgssu3apk4t7v5f.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/lmex82qnbgssu3apk4t7v5f.json
new file mode 100644
index 000000000000..81051ecc325d
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/lmex82qnbgssu3apk4t7v5f.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"lmex82qnbgssu3apk4t7v5f","title":"_g","desc":"","updated":1656059639672,"created":1656059639672,"isDir":false,"custom":{"isDir":false},"fname":"biblio._g","type":"note","vault":{"fsPath":"vault"},"contentHash":"179242a63ae4aab8b71123e0a27829de","links":[{"type":"wiki","from":{"fname":"biblio._g","id":"lmex82qnbgssu3apk4t7v5f","vaultName":"vault"},"value":"webpage","position":{"start":{"line":5,"column":14,"offset":58},"end":{"line":5,"column":25,"offset":69},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"webpage"}},{"type":"wiki","from":{"fname":"biblio._g","id":"lmex82qnbgssu3apk4t7v5f","vaultName":"vault"},"value":"2022-06-24","position":{"start":{"line":6,"column":15,"offset":84},"end":{"line":6,"column":29,"offset":98},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-06-24"}},{"type":"wiki","from":{"fname":"biblio._g","id":"lmex82qnbgssu3apk4t7v5f","vaultName":"vault"},"value":"botanical-garden-map","position":{"start":{"line":9,"column":11,"offset":194},"end":{"line":9,"column":35,"offset":218},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"botanical-garden-map"}},{"type":"wiki","from":{"fname":"biblio._g","id":"lmex82qnbgssu3apk4t7v5f","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":10,"column":3,"offset":221},"end":{"line":10,"column":10,"offset":228},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio._g","id":"lmex82qnbgssu3apk4t7v5f","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":10,"column":12,"offset":230},"end":{"line":10,"column":29,"offset":247},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio._g","id":"lmex82qnbgssu3apk4t7v5f","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":10,"column":31,"offset":249},"end":{"line":10,"column":41,"offset":259},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}},{"from":{"fname":"Bachelor-Work-2022.methodology.QGIS-and-map-sample-gestion","id":"h33m4gr8eny7li4yhlxotdb","vaultName":"vault"},"type":"backlink","position":{"start":{"line":2,"column":7,"offset":7},"end":{"line":2,"column":20,"offset":20},"indent":[]},"value":"biblio._g"}],"anchors":{"welcome-to-the-qgis-project":{"type":"header","text":"Welcome to the QGIS project!","value":"welcome-to-the-qgis-project","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":20,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/loh62lxeuw5a5tjgvw09p51.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/loh62lxeuw5a5tjgvw09p51.json
new file mode 100644
index 000000000000..08c12171247d
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/loh62lxeuw5a5tjgvw09p51.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"BiCICKL-project.nanopublications.workshops.2023.07","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345556,"created":1695629345556,"id":"loh62lxeuw5a5tjgvw09p51","desc":"","links":[],"anchors":{},"children":["y4st25fb5m6zr3lymwti67f"],"parent":"nqwegk0kpu6rf8cikepr2gv","data":{},"title":"07"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/louqeug1cijcjcbxf888b09.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/louqeug1cijcjcbxf888b09.json
new file mode 100644
index 000000000000..a4ee6458f8d3
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/louqeug1cijcjcbxf888b09.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"louqeug1cijcjcbxf888b09","title":"2023-06-08","desc":"","updated":1686217047384,"created":1686216919390,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.06.08","type":"note","vault":{"fsPath":"vault"},"contentHash":"ffba6eabc5fe6d933bd2d8183d0846d0","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"todo-browse-whole-dataset":{"type":"header","text":"TODO Browse whole dataset","value":"todo-browse-whole-dataset","line":21,"column":0,"depth":3},"code":{"type":"header","text":"CODE","value":"code","line":41,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":43,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":48,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":73,"column":0,"depth":2}},"children":[],"parent":"0rjtydgu2hme3vo7hu0vkj8","data":{}},"body":"
Should work on optimization of substructure search and Tanimoto search \n
\n
=> takes 1-2 minutes to get the results
\n
\n
\n
\n
TODO NEXT
\n
\n
add plots
\n
LCMS data
\n
add SPARQL
\n
Browse wholedataset part\n
\n
add visualization options
\n
Display JSME
\n
Display input
\n
Display table - JSME\n
\n
add Links
\n
Display images
\n
\n
\n
Display table - input\n
\n
add Links
\n
Display images
\n
\n
\n
similarity or exact search\n
\n
Level of similarity?
\n
\n
\n
\n
\n
search bar for browse molecule/organism
\n
style all app in css file
\n
create a MVC structure
\n
add wikidata images to organism visu
\n
Link from home to pages
\n
README
\n
display molecules structure
\n
\n
Important for redaction
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/lrlb8u9vx1lu5gvg7bbzu5i.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/lrlb8u9vx1lu5gvg7bbzu5i.json
new file mode 100644
index 000000000000..80553eaff77c
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/lrlb8u9vx1lu5gvg7bbzu5i.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.edefossez","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345582,"created":1695629345582,"id":"lrlb8u9vx1lu5gvg7bbzu5i","desc":"","links":[],"anchors":{},"children":["vm01cfxjhem1j6exiizdre9"],"parent":"rw6o4yru1k43k19sz84xt6m","data":{},"title":"Edefossez"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/lzywad7p2b23vp8k59a57bg.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/lzywad7p2b23vp8k59a57bg.json
new file mode 100644
index 000000000000..457e6c4cfc96
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/lzywad7p2b23vp8k59a57bg.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"lzywad7p2b23vp8k59a57bg","title":"2023-06-21","desc":"","updated":1687355038824,"created":1687330345512,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.06.21","type":"note","vault":{"fsPath":"vault"},"contentHash":"7ccb18e5484e66ee89b8d90b9e64e9be","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"todo-browse-whole-dataset":{"type":"header","text":"TODO Browse whole dataset","value":"todo-browse-whole-dataset","line":21,"column":0,"depth":3},"code":{"type":"header","text":"CODE","value":"code","line":40,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":44,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":50,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":54,"column":0,"depth":2}},"children":[],"parent":"0rjtydgu2hme3vo7hu0vkj8","data":{}},"body":"
biolpc was down in the morning so I started writing my thesis.
\n
TODO NEXT
\n
Important for redaction
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/m0n5ausa94od3m00dnqrhy9.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/m0n5ausa94od3m00dnqrhy9.json
new file mode 100644
index 000000000000..9a287eaca12f
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/m0n5ausa94od3m00dnqrhy9.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"m0n5ausa94od3m00dnqrhy9","title":"2023-08-30","desc":"","updated":1693409150462,"created":1693388126867,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.08.30","type":"note","vault":{"fsPath":"vault"},"contentHash":"a190dee5318171c3103bf0e40626616a","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":24,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":26,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":28,"column":0,"depth":2},"discsuion-cyril-boilat":{"type":"header","text":"Discsuion Cyril Boilat","value":"discsuion-cyril-boilat","line":46,"column":0,"depth":3},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":51,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":53,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":54,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":55,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":58,"column":0,"depth":2}},"children":[],"parent":"9gjxhmy8g78ehub7udeszxy","data":{}},"body":"
Will investigate the possibility of fundings at swissuniversities/snf
\n
We could think of a pilot citizen science project. For example at the scale of a class room
\n
\n
Combien de temps ca prends de traiter un echantillon ?\nThink of a time tracker to evaluate the overall eficiency of the process.
\n
\n
Discsuion Cyril Boilat
\n
IPEN est generé par BGCI
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/m1240xev45nrrsu7p29orad.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/m1240xev45nrrsu7p29orad.json
new file mode 100644
index 000000000000..450a80b5f43a
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/m1240xev45nrrsu7p29orad.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"m1240xev45nrrsu7p29orad","title":"2023-08-16","desc":"","updated":1692182265338,"created":1692180485745,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.08.16","type":"note","vault":{"fsPath":"vault"},"contentHash":"d8b7d002b3996214bdeeb85acaca77b4","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":24,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":26,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":28,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":84,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":86,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":87,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":88,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":91,"column":0,"depth":2}},"children":[],"parent":"9gjxhmy8g78ehub7udeszxy","data":{}},"body":"
mgf files in neg mode\nmgf file from ToF (check Audrey files)
\n
polars(is pandas equivalent)
\n
Think about a metadata validator interface.
\n
It should propose a metadata template with :
\n
\n
the X required metadata fields
\n
a list of validated but optional metadata fields
\n
a form to request addition of a metadata field which would not be already present in the previous list
\n
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/m3w3375qg6wrmwniyt215x6.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/m3w3375qg6wrmwniyt215x6.json
new file mode 100644
index 000000000000..4e2b09467b9b
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/m3w3375qg6wrmwniyt215x6.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"m3w3375qg6wrmwniyt215x6","title":"25","desc":"","updated":1690298498346,"created":1690284231044,"custom":{},"fname":"open-notebook.dbgi.lcappelletti.2023.07.25","type":"note","vault":{"fsPath":"vault"},"contentHash":"01299b8dd771697c29bc78f5e03c9f21","links":[{"from":{"fname":"meet.2023.07.25","id":"z0m7r6j4sp21v0fnoxdydmy","vaultName":"vault"},"type":"backlink","position":{"start":{"line":16,"column":31,"offset":354},"end":{"line":16,"column":77,"offset":400},"indent":[]},"value":"open-notebook.dbgi.lcappelletti.2023.07.25"},{"from":{"fname":"open-notebook.dbgi.pmallard.2023.07.25","id":"n6ebzlvhe56zvmm935zl068","vaultName":"vault"},"type":"backlink","position":{"start":{"line":18,"column":31,"offset":271},"end":{"line":18,"column":77,"offset":317},"indent":[]},"value":"open-notebook.dbgi.lcappelletti.2023.07.25"}],"anchors":{"this-is-luca-cappellettis-dbgi-daily-open-notebook":{"type":"header","text":"This is Luca Cappelletti's DBGI daily open-notebook.","value":"this-is-luca-cappellettis-dbgi-daily-open-notebook","line":9,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":13,"column":0,"depth":2}},"children":[],"parent":"sef56d6u8k6dnm61naamfmz","data":{}},"body":"
25
\n
This is Luca Cappelletti's DBGI daily open-notebook.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/m7rxlmot2oqmboiz9eomlja.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/m7rxlmot2oqmboiz9eomlja.json
new file mode 100644
index 000000000000..00782e6a0f24
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/m7rxlmot2oqmboiz9eomlja.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.pmallard.2022","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345606,"created":1695629345606,"id":"m7rxlmot2oqmboiz9eomlja","desc":"","links":[],"anchors":{},"children":["zrjj57h4vzxsgrmg86kfq9y","s6ozn8k96p7yh3er2vf9q6l"],"parent":"p9fzf7a60ileod5188l7y3h","data":{},"title":"2022"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/m85xh7xntk9k2iygmskhx5j.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/m85xh7xntk9k2iygmskhx5j.json
new file mode 100644
index 000000000000..da191fbedca2
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/m85xh7xntk9k2iygmskhx5j.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"m85xh7xntk9k2iygmskhx5j","title":"Acquisition","desc":"","updated":1671723734590,"created":1671723734590,"custom":{},"fname":"knowledge.acquisition","type":"note","vault":{"fsPath":"vault"},"contentHash":"7c4bb75945dcd90909b11f775a8295ca","links":[],"anchors":{},"children":[],"parent":"eh30zgccb8kw1z36jlstijv","data":{}},"body":"
Acquisition
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/mb3gnhkuhjgvnyag0d7f0ga.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/mb3gnhkuhjgvnyag0d7f0ga.json
new file mode 100644
index 000000000000..291db37b4f59
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/mb3gnhkuhjgvnyag0d7f0ga.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"mb3gnhkuhjgvnyag0d7f0ga","title":"Wp5","desc":"","updated":1676273595278,"created":1676137676242,"custom":{},"fname":"meetings.2023.02.22.program.notes.wp5","type":"note","vault":{"fsPath":"vault"},"contentHash":"827fedb989ebc05432900ef8ac446110","links":[{"from":{"fname":"meetings.2023.02.22.program","id":"33r62tekbrtckkfadan4kwj","vaultName":"vault"},"type":"backlink","position":{"start":{"line":92,"column":1,"offset":2790},"end":{"line":92,"column":43,"offset":2832},"indent":[]},"value":"meetings.2023.02.22.program.notes.wp5"}],"anchors":{"what-do-we-have-":{"type":"header","text":"What do we have ?","value":"what-do-we-have-","line":10,"column":0,"depth":3},"what-do-we-want-":{"type":"header","text":"What do we want ?","value":"what-do-we-want-","line":11,"column":0,"depth":3}},"children":[],"parent":"9676i362aou4xnjhjczonjx","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/mdvxyh9b9lv59at04h9g39k.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/mdvxyh9b9lv59at04h9g39k.json
new file mode 100644
index 000000000000..2188ec6d66b6
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/mdvxyh9b9lv59at04h9g39k.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"meet.2023.07","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345551,"created":1695629345551,"id":"mdvxyh9b9lv59at04h9g39k","desc":"","links":[],"anchors":{},"children":["z0m7r6j4sp21v0fnoxdydmy"],"parent":"76hu8527lw5c0i05b3epxub","data":{},"title":"07","schema":{"schemaId":"sjooy7yc8clsif8h6m9ldgu","moduleId":"meet"}},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/mgyfdrboy864vkt36n643aq.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/mgyfdrboy864vkt36n643aq.json
new file mode 100644
index 000000000000..83908cff0cb0
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/mgyfdrboy864vkt36n643aq.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"mgyfdrboy864vkt36n643aq","title":"2023-09-19","desc":"","updated":1695117114526,"created":1695117080350,"traitIds":["open-notebook-ebruelhart"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2023.09.19","type":"note","vault":{"fsPath":"vault"},"contentHash":"adc001848000f1db7eea8c3a2ad8bb19","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"seminar-notes":{"type":"header","text":"Seminar notes","value":"seminar-notes","line":14,"column":0,"depth":2},"":{"type":"header","text":"","value":"","line":16,"column":0,"depth":3}},"children":[],"parent":"mr13v0pgk22iz9u2st4tt1w","data":{}},"body":"
2023-09-19
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2023.09.19
\n
Seminar notes
\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/mmpekeasfm3e0k7ly7k7ogw.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/mmpekeasfm3e0k7ly7k7ogw.json
new file mode 100644
index 000000000000..d1e810261fbe
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/mmpekeasfm3e0k7ly7k7ogw.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"meetings.2023","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345554,"created":1695629345554,"id":"mmpekeasfm3e0k7ly7k7ogw","desc":"","links":[],"anchors":{},"children":["or085pr2mnvvpcg7pwmqbuk"],"parent":"ri4no5zpfcj6m7ugodevmyo","data":{},"title":"2023"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/mn44v5c7fa6f4qqoz117s8k.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/mn44v5c7fa6f4qqoz117s8k.json
new file mode 100644
index 000000000000..47f972ff8ac5
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/mn44v5c7fa6f4qqoz117s8k.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"mn44v5c7fa6f4qqoz117s8k","title":"2023-04-19","desc":"","updated":1687336635908,"created":1681891336751,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.04.19","type":"note","vault":{"fsPath":"vault"},"contentHash":"58746a2ac557c8b6b51845b49f851e00","links":[],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":20,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":23,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":24,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":26,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":28,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":30,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":32,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":54,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":56,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":57,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":58,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":61,"column":0,"depth":2}},"children":[],"parent":"kc7cc1lgen7049um6b9vb1q","data":{}},"body":"
2023-04-19
\n
This is Audrey's DBGI daily open-notebook.
\n
Today is 2023.04.19
\n
Todo today
\n
\n
try to exclude lock mass of the data \"datacompass.xzxml\" (coleus)
Powershell\nconnect shh :\nPS C:\\WINDOWS\\system32> ssh -Y lecabeca@biolpc045600 \nxpra start :100 --start=xterm ##to start a new session
\n
\n
\n
Terminal de commande\nC:\\Users\\Lecab>\"C:\\Program Files\\Xpra\\Xpra_cmd.exe\" attach ssh:lecabeca@biolpc045600:200
\n
\n
\n
Open sirius or mzmine to open software on the session
\n
\n
\n
to detach : ctrl+C\nto stop session ; on powershell : xpra stop 100 (number of the session)
\n
\n\n
\n
Wet lab : \n
\n
add acid formic to the solvent of extraction to quench metabolic or chemical reaction (enzyme, oxidation)
\n
\n
\n
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/mni0oh3x7qnxw0iqnvmp69x.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/mni0oh3x7qnxw0iqnvmp69x.json
new file mode 100644
index 000000000000..3717de4e51cd
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/mni0oh3x7qnxw0iqnvmp69x.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"mni0oh3x7qnxw0iqnvmp69x","title":"2023-05-15","desc":"","updated":1684172728512,"created":1684172716996,"traitIds":["open-notebook-lschwegler"],"custom":{},"fname":"open-notebook.dbgi.lschwegler.2023.05.15","type":"note","vault":{"fsPath":"vault"},"contentHash":"a54cf112afcbabc5fd4dfdfe0d08a448","links":[],"anchors":{"this-is-lenditas-dbgi-daily-open-notebook":{"type":"header","text":"This is Lendita's DBGI daily open-notebook.","value":"this-is-lenditas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":23,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":25,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":27,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":29,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":31,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":32,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":33,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":36,"column":0,"depth":2}},"children":[],"parent":"giitkp9yhfqe7cosjgh4t6h","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/mo79h9s695a4xdagcvnqdpm.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/mo79h9s695a4xdagcvnqdpm.json
new file mode 100644
index 000000000000..9bb17e44eca4
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/mo79h9s695a4xdagcvnqdpm.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"mo79h9s695a4xdagcvnqdpm","title":"2022-12-02","desc":"","updated":1669994215892,"created":1669987211200,"traitIds":["open-notebook-mw"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2022.12.02","type":"note","vault":{"fsPath":"vault"},"contentHash":"5e03d27f82841fb585c7552eb1d8748f","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":20,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":27,"column":0,"depth":2}},"children":[],"parent":"rio2nla30r2q15iabe8v1dh","data":{}},"body":"
2022-12-02
\n
This is Maëlle's DBGI daily open-notebook.
\n
Today is 2022.12.02
\n
TODO
\n
\n
go on with the tutorial
\n
\n
CODE
\n
NOTES
\n
Tried the dashboard creator on directus!
\n
TODO NEXT
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/mpboa8wpvhpygf5fw4o9v11.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/mpboa8wpvhpygf5fw4o9v11.json
new file mode 100644
index 000000000000..0c7f0bf5014f
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/mpboa8wpvhpygf5fw4o9v11.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"mpboa8wpvhpygf5fw4o9v11","title":"methodology","desc":"","updated":1656085217768,"created":1646063874468,"custom":{},"fname":"Bachelor-Work-2022.methodology","type":"note","vault":{"fsPath":"vault"},"contentHash":"de8925a575d9558c9a503242263038d0","links":[{"type":"wiki","from":{"fname":"Bachelor-Work-2022.methodology","id":"mpboa8wpvhpygf5fw4o9v11","vaultName":"vault"},"value":"biblio.devos_2007","position":{"start":{"line":38,"column":279,"offset":4214},"end":{"line":38,"column":300,"offset":4235},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"biblio.devos_2007"}}],"anchors":{"bibliography-import":{"type":"header","text":"Bibliography import","value":"bibliography-import","line":8,"column":0,"depth":2},"data-treatment":{"type":"header","text":"Data treatment","value":"data-treatment","line":12,"column":0,"depth":2},"map-of-the-fribourg-botanical-garden-with-a-drone":{"type":"header","text":"Map of the Fribourg botanical garden with a drone","value":"map-of-the-fribourg-botanical-garden-with-a-drone","line":16,"column":0,"depth":2},"harvesting-method":{"type":"header","text":"Harvesting method","value":"harvesting-method","line":20,"column":0,"depth":2},"liquid-nitrogen-harvesting":{"type":"header","text":"Liquid Nitrogen harvesting","value":"liquid-nitrogen-harvesting","line":42,"column":0,"depth":3},"silica-gel-harvesting":{"type":"header","text":"Silica gel harvesting","value":"silica-gel-harvesting","line":48,"column":0,"depth":3},"import-samples-on-inaturalist":{"type":"header","text":"Import samples on iNaturalist","value":"import-samples-on-inaturalist","line":54,"column":0,"depth":2},"extraction-method":{"type":"header","text":"Extraction method","value":"extraction-method","line":58,"column":0,"depth":2},"controls":{"type":"header","text":"Controls","value":"controls","line":64,"column":0,"depth":2},"liquid-chromatography-and-mass-spectrometry-analyse":{"type":"header","text":"Liquid chromatography and Mass spectrometry analyse","value":"liquid-chromatography-and-mass-spectrometry-analyse","line":72,"column":0,"depth":2},"mass-spectrometry-data-treatment":{"type":"header","text":"Mass Spectrometry Data treatment","value":"mass-spectrometry-data-treatment","line":76,"column":0,"depth":2},"link-between-the-samples-the-results-and-the-database":{"type":"header","text":"Link between the samples, the results and the database","value":"link-between-the-samples-the-results-and-the-database","line":82,"column":0,"depth":2}},"children":["eerzimvzr7s6n6j47x6sre2","h33m4gr8eny7li4yhlxotdb","fomxq979rwrl6eq0koybvl1","pydikqycpcrnouzggmjil9f","kg9bdpnhc0ozycix5asi1fg","ssi87anaiik1o7joqf7mvdp"],"parent":"a4ngr68s9ad0hxptzdp28uq","data":{}},"body":"
methodology
\n
Bibliography import
\n
To import bibliography in the Dendron, you can refer to this section
\n
Data treatment
\n
The first step of this pilot was to clean up the list of the plants available in the Fribourg botanical garden with the help of a Python interface (for more details click here). This has permitted to obtain a clear document with all unique species with their informations and locations in the garden. In the same time we have, with the help of the \"Open Tree of Life\" taxonomy, created a complete taxonomy of all plants. To this base, we have linked the OTL, Wikidata and Wikipedia page for each specimen of this list. At this time, we haden't found a good protocol to assign a unique ID for each plant yet. So we have chosen to assign batch IDs that are in format DBGI_01_04_001 to DBGI_01_04_095 for the lyophilisated samples and DBGI_01_11_001 to DBGI_01_11_040 for the silica dryed ones. For the future of the project, we have decided to use different codes for the different steps of the process. For example, the sampling will be coded DBGI_SPL_XXXXXX.
\n
Map of the Fribourg botanical garden with a drone
\n
To have a very precise location for each harvested sample, we have made a high resolution map of the Fribourg botanical garden with a drone. This map aim to obtain centimetric coordinates precision of each sample using the Structure From Motion (SFM) technology. To see the complete description of the map creation, you can go there.
\n
Harvesting method
\n
The general process used for the harvesting of one sample is firstly to take a minimum of four pictures (one of the plant in general, one of the flowers/fruits/seeds/leaves in detail, one of the prelevated zone and the last of the sample with the assigned code on it) (see an example with Physalis peruviana below). These pictures are for the iNaturalist page of the sample.
\n
Physalis peruviana in general with it's label in the botanical garden (if available)
\n
Detailed fruits and leaves of Physalis peruviana
\n
The location of the sampling indicated with the scalpel to know exactly what have been prelevated
\n
Photo of the sample with the label (here Physalis peruviana, but for the next harvests, a unique code will be developed). Here the exemple has been made with the silica sampling
\n
The second step of the sampling is to add a point on the map with the open source software QGIS. You can find complete explanations and processes here. This point will be exploited later to add a more precise location of the plant as possible on iNaturalist website.
\n
The third step of the sampling is to prelevate the part of the plant indicated on the third picture and store it in liquid nitrogen or in silica gel, according to the prefered method, that are described below.
\n
For the sampling, we have tested two different methods, that are complementary :
\n
\n
Directly put the sample in liquid Nitrogen after prelevation, and then lyophilisate in batch of approximatively 50 samples during 48 hours minimum
\n
Put the samples in coffee filters and then in plastic bags with silica
\n
\n
Liquid Nitrogen harvesting
\n
The liquide nitrogen sample seems to be more precise, but is more difficult to apply in nature. This technic seems to be better to capt the chemicals before their degradation (oxydation for example) or disappearence (volatiles) and provide the best quality chemicals detection (Devos_2007).
\n
In fact, for the pilot, the sample is put in a folded aluminium leaf, that is directly stored in the field in liquid nitrogen. After each harvesting (approximatively 50 samples), the batch is directly put in the lyophilisator for at least 48 hours. The aluminum leafs with samples are then stored at -80°C waiting the weighting and extraction. However, for the next extractions, 15ml falcon tubes seems to be better for the harvest and storage.
\n
Silica gel harvesting
\n
The silica gel was first imagined for prelevating in difficult areas where liquid nitrogen is unavailable, because it's assumed to be less preservative as liquid nitrogen. But after the first tests, it seems to be as good as the lyophilization to obtain high quality samples.
\n
In fact, for the pilot, the sample is put in a brown coffee filter, and then in a ziplock plastic bag. The silica gel is added after the harvesting session (approximatively 40 samples, that represented approximatively 5 hours in the field). Then, the silica gel is changed regularly when it becomes white. After approximatively one month, the majority of the samples are dry and don't need a silica change anymore.
\n
Import samples on iNaturalist
\n
After the sampling in the field, we have to import the samples on Inaturalist to identify the plant species, add the pictures and add the precise location. The advantages and utility of iNaturalist are described here
\n
Extraction method
\n
We have chosen to use the same extraction method for liquid nitrogen and silica gel samples to have the best comparison results.
\n
Firstly, we prelevate 50 micrograms of dryed plants for each sample, with an error of 5%, corresponding to ±2.5 micrograms. This matter is weighted in 2ml rounded bottom eppendorf tubes, and three 4mm metal beads are added. The tubes are then stored in liquid nitrogen. The samples are given a unique code at this step, that will follow the sample during all the rest of the process. After that, the samples are passed in the Retsch machine 2.5 minutes at 25Hz. After that, 1.7ml of mix 80% methanol, 20% distillated water ans 0.1% formic acid is added, and the whole is passed in the Retsch 2.5 minutes at 25Hz again. Then, the tube is passed 2 minutes at 13'000RPM in a centrifugation machine and approximatively 1.4ml of supernatent is prelevated and stored in 1.5ml vials with non split caps. These vials are stored at -80°C.
\n
Controls
\n
We have made 3 different controls to see the impact of the extraction on the sampes.
\n
\n
The first control has been processed exactly like the samples during the extraction phase, without plant tissues.
\n
The seconde control is equivalent to the first control, but has been stored 5 days at room temperature with the metal beads to see a potential impact of the rusted beads.
\n
The third control is just the extraction solution put on an eppedorf tube and prelevated some minutes later to put in vials for mass spectrometry analysis.
\n
\n
Liquid chromatography and Mass spectrometry analyse
\n
For the passage in the liquid chromatography and the mass specrometer, 300 microliters are prelevated in the 1.5ml vials and put in an other 1.5ml vial with a 400 microliters filters with a split cap. These vials are then put in the chromatograph and analyzed by batch of maximum 270 vials.
\n
Mass Spectrometry Data treatment
\n
To treat the data, we have converted the raw MS data with proteowizard to then use MZmine 2.53 for the data correction. We then have imported the resluts on the [GNPS website]https://gnps.ucsd.edu/ProteoSAFe/static/gnps-splash.jsp) to create the molecular network. Finally, the molecular network has been downloaded from GNPS to display and manage it with Cytoscape 3.8.2.
\n
\n
Link between the samples, the results and the database
\n
The link between the samples, the results and the database can be resumed by the schema below.
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/mqga292fx5kuukhx66rgvh5.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/mqga292fx5kuukhx66rgvh5.json
new file mode 100644
index 000000000000..ba08a916ab24
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/mqga292fx5kuukhx66rgvh5.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"mqga292fx5kuukhx66rgvh5","title":"2023-05-07","desc":"","updated":1683453313017,"created":1683453313017,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.05.07","type":"note","vault":{"fsPath":"vault"},"contentHash":"a44c658ad8e41ea626d2e80534b27033","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":24,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":26,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":28,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":30,"column":0,"depth":2},"httpskghuborg":{"type":"header","text":"https://kghub.org/","value":"httpskghuborg","line":32,"column":0,"depth":3},"-2":{"type":"header","text":"","value":"-2","line":35,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":36,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":39,"column":0,"depth":2}},"children":[],"parent":"j2l2hsespzdiqm6qlppt5pc","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/mr13v0pgk22iz9u2st4tt1w.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/mr13v0pgk22iz9u2st4tt1w.json
new file mode 100644
index 000000000000..8454e614a6ba
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/mr13v0pgk22iz9u2st4tt1w.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.ebruelhart.2023.09","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345581,"created":1695629345581,"id":"mr13v0pgk22iz9u2st4tt1w","desc":"","links":[],"anchors":{},"children":["mgyfdrboy864vkt36n643aq","xbm6thpignhvxup4oktamzo","n71as3hvisj1ltqsfhm4vkc"],"parent":"oa2ug1z440tznkfspdpf4fz","data":{},"title":"09"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/mr8692oaa717fbwx3sny852.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/mr8692oaa717fbwx3sny852.json
new file mode 100644
index 000000000000..4a44c012edf8
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/mr8692oaa717fbwx3sny852.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"mr8692oaa717fbwx3sny852","title":"Program","desc":"","updated":1688968752834,"created":1688664802253,"custom":{},"fname":"workshops.2023.07.12.program","type":"note","vault":{"fsPath":"vault"},"contentHash":"74baeca767b66db0938e9c238de0866b","links":[{"type":"wiki","from":{"fname":"workshops.2023.07.12.program","id":"mr8692oaa717fbwx3sny852","vaultName":"vault"},"value":"Methodology.metadata","position":{"start":{"line":45,"column":44,"offset":2387},"end":{"line":45,"column":68,"offset":2411},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"Methodology.metadata"}},{"type":"wiki","from":{"fname":"workshops.2023.07.12.program","id":"mr8692oaa717fbwx3sny852","vaultName":"vault"},"value":"workshops.2023.07.12.notes","position":{"start":{"line":51,"column":18,"offset":2505},"end":{"line":51,"column":48,"offset":2535},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"workshops.2023.07.12.notes"}}],"anchors":{"welcome-and-workshop-members-introduction-15-min":{"type":"header","text":"Welcome and workshop members’ introduction (15 min)","value":"welcome-and-workshop-members-introduction-15-min","line":17,"column":0,"depth":1},"emi-and-dbgi-presentation--overview-of-current-chemodiversity-description-approaches-45-min":{"type":"header","text":"EMI and DBGI presentation + overview of current chemodiversity description approaches (45 min)","value":"emi-and-dbgi-presentation--overview-of-current-chemodiversity-description-approaches-45-min","line":19,"column":0,"depth":1},"coffee-break":{"type":"header","text":"Coffee break","value":"coffee-break","line":25,"column":0,"depth":1},"define-the-main-purposes-of-the-earth-metabolome-semantic-model-15-min":{"type":"header","text":"Define the main purposes of the Earth Metabolome semantic model (15 min)","value":"define-the-main-purposes-of-the-earth-metabolome-semantic-model-15-min","line":27,"column":0,"depth":1},"review-ontology-engineering-activities-rest-of-the-morning":{"type":"header","text":"Review: ontology engineering activities (rest of the morning)","value":"review-ontology-engineering-activities-rest-of-the-morning","line":33,"column":0,"depth":1},"lunch-1230":{"type":"header","text":"Lunch (12:30?)","value":"lunch-1230","line":39,"column":0,"depth":1},"review-ontology-engineering-activities-afternoon":{"type":"header","text":"Review: ontology engineering activities (afternoon)","value":"review-ontology-engineering-activities-afternoon","line":41,"column":0,"depth":1},"final-remarks-and-next-steps":{"type":"header","text":"Final remarks and next steps","value":"final-remarks-and-next-steps","line":53,"column":0,"depth":1}},"children":[],"parent":"5xi2kxvk62vfhpjcy6re666","data":{}},"body":"
Welcome and workshop members’ introduction (15 min)
\n
EMI and DBGI presentation + overview of current chemodiversity description approaches (45 min)
\n
The objective here will be to understand what are the main ways to characterize chemodiversity from complex biological matrices (at least the ones used in EMI).\nThis overview will recap which objects are handled in natural products research and computational mass spec and how they are generated.\nThis recap should allow us to start on the same page when working on the semantic model.
\n
Coffee break
\n
Define the main purposes of the Earth Metabolome semantic model (15 min)
\n
- What do we have in hands ? Review of the current ENPKG model https://enpkg.commons-lab.org/doc/index.html and Fig S1 in https://doi.org/10.26434/chemrxiv-2023-sljbt\n\nEg.: structure existing data, Swiss Botanical Garden use case\n
\n
Review: ontology engineering activities (rest of the morning)
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/muctzzo3wicwfunt4wz99tn.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/muctzzo3wicwfunt4wz99tn.json
new file mode 100644
index 000000000000..b9d8c15566c5
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/muctzzo3wicwfunt4wz99tn.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"muctzzo3wicwfunt4wz99tn","title":"2023-06-12","desc":"","updated":1686573229759,"created":1686567993641,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.06.12","type":"note","vault":{"fsPath":"vault"},"contentHash":"2bccf013591f1f16edc1dc6231b358e9","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"participants":{"type":"header","text":"Participants","value":"participants","line":32,"column":0,"depth":3},"programme":{"type":"header","text":"Programme","value":"programme","line":54,"column":0,"depth":1},"presentation-from-christophe-dessimoz":{"type":"header","text":"Presentation from Christophe Dessimoz","value":"presentation-from-christophe-dessimoz","line":58,"column":0,"depth":1},"round-table--panel-discussions-on-challenges-and-solutions":{"type":"header","text":"Round table / panel discussions on challenges and solutions","value":"round-table--panel-discussions-on-challenges-and-solutions","line":65,"column":0,"depth":1},"panel-questions":{"type":"header","text":"Panel Questions","value":"panel-questions","line":70,"column":0,"depth":1},"questions-":{"type":"header","text":"Questions :","value":"questions-","line":96,"column":0,"depth":1},"paused":{"type":"header","text":"Paused","value":"paused","line":134,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":136,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":138,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":140,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":142,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":143,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":144,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":147,"column":0,"depth":2}},"children":[],"parent":"8duum2njm3z1sm4nnvgy93s","data":{}},"body":"
~10 min presentations of projects/tools for text mining of biodiversity data\nPlazi & Synospecies: Donat (slides)\neBioDiv & Biodiversity PMC: Patrick (slides)\nArthroMine: Joseph & Harald (slides)
\n
Round table / panel discussions on challenges and solutions
\n
Coffee/tea - hopefully!
\n
Panel Questions
\n
\n
Are you using text mining tools in your pipeline?
\n
\n
\n
\n
Which services would you wish to have from a text mining pipeline?
\n
\n
\n
Do you use literature in your respective research?
\n
\n
\n
What other data do you use: specimen/GBIF, sequences/ENA, mass spec/LOTUS, … ?
\n
\n
\n
How do you access literature contents: open or closed?
\n
\n
\n
How to put together different communities into a joint effort?
\n
\n
\n
Data stewardship: who produces which data, and who maintains it? Which open repositories are key?
\n
\n
\n
What part of your research pipeline could benefit from a new tech or new database?
\n
\n
\n
How to grow a dedicated biodiversity chapter within the Swiss BioData ecosystem?
\n
\n
\n
Environmental bioinformatics will be a strategic obj of SIB in the next years.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/n0racr7o73zkdsyfvpomj9y.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/n0racr7o73zkdsyfvpomj9y.json
new file mode 100644
index 000000000000..2093e38cc0b9
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/n0racr7o73zkdsyfvpomj9y.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.mwannier.2023.04","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345596,"created":1695629345596,"id":"n0racr7o73zkdsyfvpomj9y","desc":"","links":[],"anchors":{},"children":["sz9fbyyte5ptelk0xnshw0l","hldpw41a5q15prhcv9sdunm","nlqzy1fuhh7335ll2imsywp","kxewm1dcs9lx6tziiyp0fvr","yz1zk8cjefojb9xnq68244t","dip8h9bu3zw2kxtiepqn1fy","z8mejrh3ikjqdkd8xfaqle6","s93kczxf6qwb83p4bfo7co2","00766fikfyl4yrxeinikond"],"parent":"hjgld8jupnd9k7kzqe0ubra","data":{},"title":"04"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/n59webexsilqctwdfq5tn21.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/n59webexsilqctwdfq5tn21.json
new file mode 100644
index 000000000000..6fb7d36b606a
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/n59webexsilqctwdfq5tn21.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"n59webexsilqctwdfq5tn21","title":"2023-04-21","desc":"","updated":1682063094010,"created":1682062573836,"traitIds":["open-notebook-lschwegler"],"custom":{},"fname":"open-notebook.dbgi.lschwegler.2023.04.21","type":"note","vault":{"fsPath":"vault"},"contentHash":"1d4fb172f2744943205f22a7cacde71b","links":[],"anchors":{"this-is-lenditas-dbgi-daily-open-notebook":{"type":"header","text":"This is Lendita's DBGI daily open-notebook.","value":"this-is-lenditas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":23,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":25,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":27,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":32,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":34,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":35,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":36,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":39,"column":0,"depth":2}},"children":[],"parent":"k1podevswt9ww6fu8pm77tt","data":{}},"body":"
I put the last 52 samples in the freeze dryer today, which is now running over the weekend. This means that the samples are now in the freeze dryer for 72 hours, which is very good. I am very confident that next week all samples will be completely dry. It has been shown that it is really not due to the size and thickness of the plants, but that they can really be in the freeze dryer long enough. 48h was just too short for some plants.
\n
Next week, Edouard will take care of the next steps for me, as I'm unfortunately not allowed to go to the lab - and then comes the mass spectrometry with Pierre-Marie. I am already very excited 😊
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/n6ebzlvhe56zvmm935zl068.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/n6ebzlvhe56zvmm935zl068.json
new file mode 100644
index 000000000000..a84e16a878db
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/n6ebzlvhe56zvmm935zl068.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"n6ebzlvhe56zvmm935zl068","title":"2023-07-25","desc":"","updated":1690287869695,"created":1690286511560,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.07.25","type":"note","vault":{"fsPath":"vault"},"contentHash":"132dd4f2c45cc88585614139b0bc51fe","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2023.07.25","id":"n6ebzlvhe56zvmm935zl068","vaultName":"vault"},"value":"open-notebook.dbgi.lcappelletti.2023.07.25","position":{"start":{"line":18,"column":31,"offset":271},"end":{"line":18,"column":77,"offset":317},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook.dbgi.lcappelletti.2023.07.25"}},{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2023.07.25","id":"n6ebzlvhe56zvmm935zl068","vaultName":"vault"},"value":"meet.2023.07.25","position":{"start":{"line":20,"column":1,"offset":319},"end":{"line":20,"column":20,"offset":338},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"meet.2023.07.25"}}],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":34,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":36,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":38,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":40,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":42,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":43,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":44,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":47,"column":0,"depth":2}},"children":[],"parent":"vvcscq2gtvhdsmtmbqfqjqb","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/n6q9mhbpvesbo1oiewipczt.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/n6q9mhbpvesbo1oiewipczt.json
new file mode 100644
index 000000000000..6ba191658591
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/n6q9mhbpvesbo1oiewipczt.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"n6q9mhbpvesbo1oiewipczt","title":"2023-02-21","desc":"","updated":1677143913800,"created":1676965831727,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.02.21","type":"note","vault":{"fsPath":"vault"},"contentHash":"c35324e63ef0fcb599721916138651e8","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":15,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":17,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":19,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":34,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":38,"column":0,"depth":2}},"children":[],"parent":"3q0f349eurhhy0r6e1to0d2","data":{}},"body":"
Yesterday problem:\nHow to use Molplotly in dashboard?? => molplotly already returns an app\n=> Can display on one page \n==> convert the Jupyterdash layout into dash layout
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/n71as3hvisj1ltqsfhm4vkc.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/n71as3hvisj1ltqsfhm4vkc.json
new file mode 100644
index 000000000000..ad06d729f6a7
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/n71as3hvisj1ltqsfhm4vkc.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"n71as3hvisj1ltqsfhm4vkc","title":"2023-09-25","desc":"","updated":1695629245343,"created":1695626294331,"traitIds":["open-notebook-ebruelhart"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2023.09.25","type":"note","vault":{"fsPath":"vault"},"contentHash":"e6f10ec4fe4cb4757836d5413209e234","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"presentations-biodigicon":{"type":"header","text":"Presentations BioDigiCon","value":"presentations-biodigicon","line":14,"column":0,"depth":2},"krisztina-lohonya-transcription-and-geo-referencing-international-collections-httpsdrivegooglecomfiled1mhqb-ho8etc04v_rcodif77igjq11mgwview":{"type":"header","text":"Krisztina Lohonya, Transcription and geo-referencing international collections: https://drive.google.com/file/d/1MhQb-hO8etc04v_RcodIf77IGjq11MgW/view","value":"krisztina-lohonya-transcription-and-geo-referencing-international-collections-httpsdrivegooglecomfiled1mhqb-ho8etc04v_rcodif77igjq11mgwview","line":16,"column":0,"depth":3},"grant-fitzsimmons-advancing-biological-collections-with-specify-7-httpsdrivegooglecomfiled1d5b81vxlpa0yjeujcvz4o626-p5ph-u_view":{"type":"header","text":"Grant Fitzsimmons, Advancing Biological Collections with Specify 7: https://drive.google.com/file/d/1D5B81VXLpa0YJeuJCvz4o626-P5Ph-u_/view","value":"grant-fitzsimmons-advancing-biological-collections-with-specify-7-httpsdrivegooglecomfiled1d5b81vxlpa0yjeujcvz4o626-p5ph-u_view","line":23,"column":0,"depth":3},"jorrit-poelen-building-a-digital-extended-specimen-one-association-at-a-time-what-does-it-take-to-extend-obi-herbarium-records-with-their-associated-genbank-sequences-httpsdrivegooglecomfiled185ffa7nligregqishpye-ht5dt4xiavuview":{"type":"header","text":"Jorrit Poelen, Building a Digital Extended Specimen One Association at a Time: What Does It Take to Extend OBI Herbarium Records with their Associated GenBank Sequences?: https://drive.google.com/file/d/185fFa7NliGREgqiShpYe-Ht5dT4xIaVu/view","value":"jorrit-poelen-building-a-digital-extended-specimen-one-association-at-a-time-what-does-it-take-to-extend-obi-herbarium-records-with-their-associated-genbank-sequences-httpsdrivegooglecomfiled185ffa7nligregqishpye-ht5dt4xiavuview","line":34,"column":0,"depth":3}},"children":[],"parent":"mr13v0pgk22iz9u2st4tt1w","data":{}},"body":"
Unique identifier, image, label, georeferencing, put specimen on the map\nPossible via writing types and dates -> each language at a specific time has a specific style that can be recognized\nCollector background to be more precise\nNot so interesting for our project, but we have all the elements they use to caracterize a specimen
Specify 7 could be a solution to replace or complement directus. It has an API. To see if it's more powerfull as directus\nNice tree visualisation (specimen, geography, species, etc.)\nExample with an excel file, possible with a CSV or not?\nEasy use of templates\nEasy mapping of large files with the GUI. Just select the field and say which file column has to be imported in. Nice control of errors after the import. Nice functionnalities like if we where on excel or google sheet\nNice query interface, possible to select a world zone and select all the records present in this region\nNice remove duplicates interface\nSadly, presentation more oriented to GUI, no details about the API and automatic imports.
I didn't really understand what he did. I think this is out of my domain and competences. Maybe more useful for Luca.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/n8f8u3ozin3et4pvtgt16h9.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/n8f8u3ozin3et4pvtgt16h9.json
new file mode 100644
index 000000000000..7d51842af9c0
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/n8f8u3ozin3et4pvtgt16h9.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"n8f8u3ozin3et4pvtgt16h9","title":"Methodology","desc":"","updated":1677675312969,"created":1677161472631,"custom":{},"fname":"Bachelor-Work-2023.Methodology","type":"note","vault":{"fsPath":"vault"},"contentHash":"c868895f6a2d259bbb46b8666f11ae42","links":[],"anchors":{},"children":["wynq1q71ia5acf9q2u68ktk"],"parent":"kwkq4jyak1qs8xg2nicjes0","data":{}},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/n8vkdmb1r45m3z6lqqrvd94.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/n8vkdmb1r45m3z6lqqrvd94.json
new file mode 100644
index 000000000000..68c537986a5a
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/n8vkdmb1r45m3z6lqqrvd94.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.ebruelhart.2022.10","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345574,"created":1695629345574,"id":"n8vkdmb1r45m3z6lqqrvd94","desc":"","links":[],"anchors":{},"children":["xr4rp5wm35k7mzg99k2zpx3"],"parent":"vechu9nek0ai9pac4taotye","data":{},"title":"10"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/n9g24lal4rselnrk12kp2jv.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/n9g24lal4rselnrk12kp2jv.json
new file mode 100644
index 000000000000..87c694f222bc
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/n9g24lal4rselnrk12kp2jv.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.mwannier.2022.09","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345588,"created":1695629345588,"id":"n9g24lal4rselnrk12kp2jv","desc":"","links":[],"anchors":{},"children":["o7acjnkovdko8q1hp1jw6ag"],"parent":"ebf7zmqp4iniyzz0xs0grhw","data":{},"title":"09"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/nat1tahs5uze95g4vu680dk.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/nat1tahs5uze95g4vu680dk.json
new file mode 100644
index 000000000000..702fffb8c263
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/nat1tahs5uze95g4vu680dk.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"nat1tahs5uze95g4vu680dk","title":"Field setup","desc":"","updated":1685099383018,"created":1680685041564,"custom":{},"fname":"Field setup","type":"note","vault":{"fsPath":"vault"},"contentHash":"30cfdfc3267be071dd44becb61285120","links":[],"anchors":{},"children":["qug423ond4xtns8lelu38p2","fkbclzsoo3zgkkvgrlsg26g"],"parent":"txkHnVTI9AawnquiublXO","data":{}},"body":"
Field setup
\n
If you are new into the DBGI project and you want to collect samples, here is the tutorial to do it:
\n\n
\n
Go there to create an account on the collection server. An error will occur, but your account have been registered. You won't need to use this webpage again.
\n
\n
\n
Communicate the username of you newly created account and the specific project you want to join (JBN, JBUF, EMI, ...) to Edouard Brülhart (edouard.bruelhart@unifr.ch). Wait the adding (manual so it can take some hours/days).
\n
\n\n
Now you are part of the project you chose. Following your needs, you can create your own layer by following this tutorial. If you already have a layer to collect, you can follow this tutorial to begin the collection process.
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/nfc206twvthy35t1p9r5x53.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/nfc206twvthy35t1p9r5x53.json
new file mode 100644
index 000000000000..546ae0c6790c
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/nfc206twvthy35t1p9r5x53.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"scratch.2023","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345620,"created":1695629345620,"id":"nfc206twvthy35t1p9r5x53","desc":"","links":[],"anchors":{},"children":["06t1xeogkiiks197mr73z7m"],"parent":"162yano91jna1gh3m9qou3k","data":{},"title":"2023"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/nis3qb90g3x913svoftvdss.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/nis3qb90g3x913svoftvdss.json
new file mode 100644
index 000000000000..d2d88278c349
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/nis3qb90g3x913svoftvdss.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"workshops.2023","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345552,"created":1695629345552,"id":"nis3qb90g3x913svoftvdss","desc":"","links":[{"from":{"fname":"open-notebook.dbgi.pmallard.2023.07.06","id":"0a3imv12qpz8x053ojqpj66","vaultName":"vault"},"type":"backlink","position":{"start":{"line":18,"column":1,"offset":263},"end":{"line":18,"column":19,"offset":281},"indent":[]},"value":"workshops.2023"}],"anchors":{},"children":["f4lffu00dnmut291yvfk5w9","1pp8t915arv21vol7xltu9e"],"parent":"taqys3xr6utmvhoen4ibr7c","data":{},"title":"2023"},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/nl3v8ba6dtxsuzvr7xurkv7.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/nl3v8ba6dtxsuzvr7xurkv7.json
new file mode 100644
index 000000000000..731959929a63
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/nl3v8ba6dtxsuzvr7xurkv7.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"BiCICKL-project.nanopublications.workshops","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345556,"created":1695629345556,"id":"nl3v8ba6dtxsuzvr7xurkv7","desc":"","links":[],"anchors":{},"children":["nqwegk0kpu6rf8cikepr2gv"],"parent":"jhi5wst259ii3b5oq2d3r0l","data":{},"title":"workshops"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/nlqzy1fuhh7335ll2imsywp.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/nlqzy1fuhh7335ll2imsywp.json
new file mode 100644
index 000000000000..13858c7f1703
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/nlqzy1fuhh7335ll2imsywp.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"nlqzy1fuhh7335ll2imsywp","title":"2023-04-12","desc":"","updated":1681301195760,"created":1681285387829,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.04.12","type":"note","vault":{"fsPath":"vault"},"contentHash":"99e0cb7b253e14a7a29a06d9ce4439a2","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":25,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":29,"column":0,"depth":2}},"children":[],"parent":"n0racr7o73zkdsyfvpomj9y","data":{}},"body":"
Use a fingerprint-based similarity measure instead of Maximum Common Substructure (MCS). Fingerprint-based similarity is generally faster and more suitable for large datasets. You can use the RDKit's Morgan fingerprints (also known as ECFP or Extended Connectivity Fingerprints).
\n
\n
\n
Use a parallel processing library like concurrent.futures to speed up the similarity calculation by utilizing multiple CPU cores.
\n
\n
\n
Fetch molecules from the PostgreSQL database in batches to avoid loading all molecules into memory at once.
\n
\n\n
Which threshold is the best?\nThe ideal threshold for Tanimoto similarity depends on your specific use case and the desired level of similarity between molecules. There's no one-size-fits-all answer, but here are some general guidelines:
\n
A threshold of 0.7-0.8 is often used for finding moderately similar molecules. This range is considered to provide a good balance between retaining some diversity and ensuring that the molecules share significant structural features.\n\nA higher threshold (e.g., >0.85) is suitable when you want to find molecules that are highly similar or almost identical to the reference molecule. This is helpful in cases like identifying analogs or finding molecules with very similar properties.\n\nA lower threshold (e.g., <0.7) can be used if you want to include more diverse molecules that still share some structural features with the reference molecule. This is useful when you're looking for a broader range of potentially interesting molecules, for instance, in a scaffold hopping approach in drug discovery.\n
\n
It's important to note that the choice of threshold is highly dependent on the molecular fingerprints you're using and the specific requirements of your application. You might need to experiment with different thresholds to find the one that works best for your needs. Additionally, keep in mind that the distribution of Tanimoto similarity values may vary across different datasets, so the ideal threshold might change when working with different molecular libraries.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/nnhoqwog50xoiu1bzbn6cyj.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/nnhoqwog50xoiu1bzbn6cyj.json
new file mode 100644
index 000000000000..5dcc4f500fc4
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/nnhoqwog50xoiu1bzbn6cyj.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"nnhoqwog50xoiu1bzbn6cyj","title":"Taxonomy Import","desc":"","updated":1668098517223,"created":1646646898643,"custom":{},"fname":"taxonomy-import","type":"note","vault":{"fsPath":"vault"},"contentHash":"9affdd5682ac80f46f5be605b008aab7","links":[],"anchors":{},"children":[],"parent":"txkHnVTI9AawnquiublXO","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/no97uw00f313ac26c6d5hfl.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/no97uw00f313ac26c6d5hfl.json
new file mode 100644
index 000000000000..e66def0c996f
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/no97uw00f313ac26c6d5hfl.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.mwannier.2022.10","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345588,"created":1695629345588,"id":"no97uw00f313ac26c6d5hfl","desc":"","links":[],"anchors":{},"children":["sbh3tzjkfz4sqw3onjm7pl3"],"parent":"ebf7zmqp4iniyzz0xs0grhw","data":{},"title":"10"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/np8l2zaeqin0s34sk66oyo7.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/np8l2zaeqin0s34sk66oyo7.json
new file mode 100644
index 000000000000..8c5cc03681fb
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/np8l2zaeqin0s34sk66oyo7.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"np8l2zaeqin0s34sk66oyo7","title":"Visualization","desc":"","updated":1669568219135,"created":1669568072179,"custom":{},"fname":"data.visualization","type":"note","vault":{"fsPath":"vault"},"contentHash":"a104515763274891d23991dac5e55dae","links":[],"anchors":{"ressources":{"type":"header","text":"Ressources","value":"ressources","line":8,"column":0,"depth":1}},"children":[],"parent":"o6r2k35gfsfur2gwgk56ra3","data":{}},"body":"
In the ChordB proposal we talked about (but didn't elaborate on) :
\n
\n
A web interface displaying the results of the KG queries (see above for details) and adopting the Vega grammar (https://vega.github.io/vega/) will be established to allow users to visually explore the DBGI data.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/nps3scza4bu7zdnkuz9kxbz.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/nps3scza4bu7zdnkuz9kxbz.json
new file mode 100644
index 000000000000..3eef0c174421
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/nps3scza4bu7zdnkuz9kxbz.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"nps3scza4bu7zdnkuz9kxbz","title":"Yang_2017","desc":"","updated":1656059639673,"created":1656059639673,"isDir":false,"custom":{"isDir":false},"fname":"biblio.yang_2017","type":"note","vault":{"fsPath":"vault"},"contentHash":"8bf36219970d6e357337ca7611cd93be","links":[{"type":"wiki","from":{"fname":"biblio.yang_2017","id":"nps3scza4bu7zdnkuz9kxbz","vaultName":"vault"},"value":"article","position":{"start":{"line":5,"column":14,"offset":111},"end":{"line":5,"column":25,"offset":122},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"article"}},{"type":"wiki","from":{"fname":"biblio.yang_2017","id":"nps3scza4bu7zdnkuz9kxbz","vaultName":"vault"},"value":"ya-yang","position":{"start":{"line":6,"column":12,"offset":134},"end":{"line":6,"column":23,"offset":145},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"ya-yang"}},{"type":"wiki","from":{"fname":"biblio.yang_2017","id":"nps3scza4bu7zdnkuz9kxbz","vaultName":"vault"},"value":"michael-j.-moore","position":{"start":{"line":6,"column":25,"offset":147},"end":{"line":6,"column":45,"offset":167},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"michael-j.-moore"}},{"type":"wiki","from":{"fname":"biblio.yang_2017","id":"nps3scza4bu7zdnkuz9kxbz","vaultName":"vault"},"value":"samuel-f.-brockington","position":{"start":{"line":6,"column":47,"offset":169},"end":{"line":6,"column":72,"offset":194},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"samuel-f.-brockington"}},{"type":"wiki","from":{"fname":"biblio.yang_2017","id":"nps3scza4bu7zdnkuz9kxbz","vaultName":"vault"},"value":"alfonso-timoneda","position":{"start":{"line":6,"column":74,"offset":196},"end":{"line":6,"column":94,"offset":216},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"alfonso-timoneda"}},{"type":"wiki","from":{"fname":"biblio.yang_2017","id":"nps3scza4bu7zdnkuz9kxbz","vaultName":"vault"},"value":"tao-feng","position":{"start":{"line":6,"column":96,"offset":218},"end":{"line":6,"column":108,"offset":230},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"tao-feng"}},{"type":"wiki","from":{"fname":"biblio.yang_2017","id":"nps3scza4bu7zdnkuz9kxbz","vaultName":"vault"},"value":"hannah-e.-marx","position":{"start":{"line":6,"column":110,"offset":232},"end":{"line":6,"column":128,"offset":250},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"hannah-e.-marx"}},{"type":"wiki","from":{"fname":"biblio.yang_2017","id":"nps3scza4bu7zdnkuz9kxbz","vaultName":"vault"},"value":"joseph-f.-walker","position":{"start":{"line":6,"column":130,"offset":252},"end":{"line":6,"column":150,"offset":272},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"joseph-f.-walker"}},{"type":"wiki","from":{"fname":"biblio.yang_2017","id":"nps3scza4bu7zdnkuz9kxbz","vaultName":"vault"},"value":"stephen-a.-smith","position":{"start":{"line":6,"column":152,"offset":274},"end":{"line":6,"column":172,"offset":294},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"stephen-a.-smith"}},{"type":"wiki","from":{"fname":"biblio.yang_2017","id":"nps3scza4bu7zdnkuz9kxbz","vaultName":"vault"},"value":"2017","position":{"start":{"line":7,"column":9,"offset":303},"end":{"line":7,"column":17,"offset":311},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2017"}},{"type":"wiki","from":{"fname":"biblio.yang_2017","id":"nps3scza4bu7zdnkuz9kxbz","vaultName":"vault"},"value":"2022-04-06","position":{"start":{"line":8,"column":15,"offset":326},"end":{"line":8,"column":29,"offset":340},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-04-06"}},{"type":"wiki","from":{"fname":"biblio.yang_2017","id":"nps3scza4bu7zdnkuz9kxbz","vaultName":"vault"},"value":"tags.Caryophyllales","alias":"#Caryophyllales","position":{"start":{"line":12,"column":9,"offset":571},"end":{"line":12,"column":24,"offset":586},"indent":[]},"xvault":false,"to":{"fname":"tags.Caryophyllales"}},{"type":"wiki","from":{"fname":"biblio.yang_2017","id":"nps3scza4bu7zdnkuz9kxbz","vaultName":"vault"},"value":"tags.cryogenic-field-sampling","alias":"#cryogenic-field-sampling","position":{"start":{"line":12,"column":26,"offset":588},"end":{"line":12,"column":51,"offset":613},"indent":[]},"xvault":false,"to":{"fname":"tags.cryogenic-field-sampling"}},{"type":"wiki","from":{"fname":"biblio.yang_2017","id":"nps3scza4bu7zdnkuz9kxbz","vaultName":"vault"},"value":"tags.phylogenomics","alias":"#phylogenomics","position":{"start":{"line":12,"column":53,"offset":615},"end":{"line":12,"column":67,"offset":629},"indent":[]},"xvault":false,"to":{"fname":"tags.phylogenomics"}},{"type":"wiki","from":{"fname":"biblio.yang_2017","id":"nps3scza4bu7zdnkuz9kxbz","vaultName":"vault"},"value":"tags.phylotranscriptomics","alias":"#phylotranscriptomics","position":{"start":{"line":12,"column":69,"offset":631},"end":{"line":12,"column":90,"offset":652},"indent":[]},"xvault":false,"to":{"fname":"tags.phylotranscriptomics"}},{"type":"wiki","from":{"fname":"biblio.yang_2017","id":"nps3scza4bu7zdnkuz9kxbz","vaultName":"vault"},"value":"tags.RNA","alias":"#RNA","position":{"start":{"line":12,"column":92,"offset":654},"end":{"line":12,"column":96,"offset":658},"indent":[]},"xvault":false,"to":{"fname":"tags.RNA"}},{"type":"wiki","from":{"fname":"biblio.yang_2017","id":"nps3scza4bu7zdnkuz9kxbz","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":12,"column":98,"offset":660},"end":{"line":12,"column":105,"offset":667},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio.yang_2017","id":"nps3scza4bu7zdnkuz9kxbz","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":12,"column":107,"offset":669},"end":{"line":12,"column":124,"offset":686},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio.yang_2017","id":"nps3scza4bu7zdnkuz9kxbz","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":12,"column":126,"offset":688},"end":{"line":12,"column":136,"offset":698},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}}],"anchors":{"an-efficient-field-and-laboratory-workflow-for-plant-phylotranscriptomic-projects":{"type":"header","text":"An efficient field and laboratory workflow for plant phylotranscriptomic projects","value":"an-efficient-field-and-laboratory-workflow-for-plant-phylotranscriptomic-projects","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"abstract":{"type":"header","text":"Abstract","value":"abstract","line":23,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":28,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
Yang_2017
\n
An efficient field and laboratory workflow for plant phylotranscriptomic projects
Premise of the study: We describe a field and laboratory workflow developed for plant phylotranscriptomic projects that involves cryogenic tissue collection in the field, RNA extraction and quality control, and library preparation. We also make recommendations for sample curation. Methods and Results: A total of 216 frozen tissue samples of Caryophyllales and other angiosperm taxa were collected from the field or botanical gardens. RNA was extracted, stranded mRNA libraries were prepared, and libraries were sequenced on Illumina HiSeq platforms. These included difficult mucilaginous tissues such as those of Cactaceae and Droseraceae. Conclusions: Our workflow is not only cost effective (ca. $270 per sample, as of August 2016, from tissue to reads) and time efficient (less than 50 h for 10–12 samples including all laboratory work and sample curation), but also has proven robust for extraction of difficult samples such as tissues containing high levels of secondary compounds.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/nqwegk0kpu6rf8cikepr2gv.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/nqwegk0kpu6rf8cikepr2gv.json
new file mode 100644
index 000000000000..32cd03e1fef1
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/nqwegk0kpu6rf8cikepr2gv.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"BiCICKL-project.nanopublications.workshops.2023","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345556,"created":1695629345556,"id":"nqwegk0kpu6rf8cikepr2gv","desc":"","links":[],"anchors":{},"children":["loh62lxeuw5a5tjgvw09p51"],"parent":"nl3v8ba6dtxsuzvr7xurkv7","data":{},"title":"2023"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/nwomp6jyz8nwnj5b1bwgjvp.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/nwomp6jyz8nwnj5b1bwgjvp.json
new file mode 100644
index 000000000000..1188e8d75d45
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/nwomp6jyz8nwnj5b1bwgjvp.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"nwomp6jyz8nwnj5b1bwgjvp","title":"2023-05-12","desc":"","updated":1683883107447,"created":1683883101814,"traitIds":["open-notebook-lschwegler"],"custom":{},"fname":"open-notebook.dbgi.lschwegler.2023.05.12","type":"note","vault":{"fsPath":"vault"},"contentHash":"0a4771b7bf1088ba4cf44c8c30d53fe3","links":[],"anchors":{"this-is-lenditas-dbgi-daily-open-notebook":{"type":"header","text":"This is Lendita's DBGI daily open-notebook.","value":"this-is-lenditas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":23,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":25,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":27,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":30,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":32,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":33,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":34,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":37,"column":0,"depth":2}},"children":[],"parent":"giitkp9yhfqe7cosjgh4t6h","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/nzxo4k19o233nuxo88k7fyi.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/nzxo4k19o233nuxo88k7fyi.json
new file mode 100644
index 000000000000..037bf56efea6
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/nzxo4k19o233nuxo88k7fyi.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"nzxo4k19o233nuxo88k7fyi","title":"2023-01-31","desc":"","updated":1675154317953,"created":1675154212598,"traitIds":["open-notebook-ebruelhart"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2023.01.31","type":"note","vault":{"fsPath":"vault"},"contentHash":"461179cd19de31839ca76a8eb7ac4e63","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":15,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":17,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":19,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":21,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":28,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":30,"column":0,"depth":1}},"children":[],"parent":"rwwstq9pnk2fqonf946x951","data":{}},"body":"
2023-01-31
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2023.01.31
\n
To do
\n
done
\n
Perspectives
\n
notes
\n
21.01.2023 (problem with the creation of daily notebooks, so I repost the 21.01.2023 note here)\nexiftool -XMP:GPSLongitude=\"7.211111\" -XMP:GPSLatitude=\"46.2000000\" -GPSLongitudeRef=\"West\" -GPSLatitudeRef=\"North\" ./test_img/IMG_20221103_125701.jpg\nThis powershell command permits to change coordinates metadata of a picture. Now I have to find the way to execute it with R. For instance, I have to find a way to display quotes in the paste() function of R.
\n
code
\n
links
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/o1mduta2pzccrzqm3osarb2.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/o1mduta2pzccrzqm3osarb2.json
new file mode 100644
index 000000000000..635b1d9b5dba
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/o1mduta2pzccrzqm3osarb2.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"o1mduta2pzccrzqm3osarb2","title":"2023-02-15","desc":"","updated":1676473595360,"created":1676473265398,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.02.15","type":"note","vault":{"fsPath":"vault"},"contentHash":"7de28cfb7ee89b526ba7a3b4cd657b67","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":15,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":17,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":19,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":24,"column":0,"depth":2}},"children":[],"parent":"3q0f349eurhhy0r6e1to0d2","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/o2psjwj00vl4m8d7rgyfk9f.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/o2psjwj00vl4m8d7rgyfk9f.json
new file mode 100644
index 000000000000..42326c12ff6a
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/o2psjwj00vl4m8d7rgyfk9f.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"o2psjwj00vl4m8d7rgyfk9f","title":"Database","desc":"","updated":1677072185296,"created":1663920596689,"custom":{},"fname":"database","type":"note","vault":{"fsPath":"vault"},"contentHash":"df176d4ad9c836ad18d803f9ee559522","links":[],"anchors":{},"children":["kc3mm3rc1fmmb3vzmjlh97r"],"parent":"txkHnVTI9AawnquiublXO","data":{}},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/o6r2k35gfsfur2gwgk56ra3.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/o6r2k35gfsfur2gwgk56ra3.json
new file mode 100644
index 000000000000..065b54d81fbf
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/o6r2k35gfsfur2gwgk56ra3.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"o6r2k35gfsfur2gwgk56ra3","title":"Data","desc":"","updated":1669567701115,"created":1669567701115,"custom":{},"fname":"data","type":"note","vault":{"fsPath":"vault"},"contentHash":"3e7152d2859593b80e25fdeaee210e95","links":[],"anchors":{},"children":["iaa2g392h073scg24s9ruh3","np8l2zaeqin0s34sk66oyo7"],"parent":"txkHnVTI9AawnquiublXO","data":{}},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/o7acjnkovdko8q1hp1jw6ag.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/o7acjnkovdko8q1hp1jw6ag.json
new file mode 100644
index 000000000000..e065af35266d
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/o7acjnkovdko8q1hp1jw6ag.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"o7acjnkovdko8q1hp1jw6ag","title":"22","desc":"","updated":1674143628189,"created":1674143542040,"custom":{},"fname":"open-notebook.dbgi.mwannier.2022.09.22","type":"note","vault":{"fsPath":"vault"},"contentHash":"c73f43c0be3557ede2523050d81208bc","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":8,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":12,"column":0,"depth":2},"pros---cons-of-softwares":{"type":"header","text":"Pros - Cons of softwares","value":"pros---cons-of-softwares","line":20,"column":0,"depth":2},"-nocodb":{"type":"header","text":"❓ nocoDb","value":"-nocodb","line":22,"column":0,"depth":3},"-openoffice-base":{"type":"header","text":"❌ OpenOffice Base","value":"-openoffice-base","line":36,"column":0,"depth":3},"-dbeaver":{"type":"header","text":"❓ dBeaver","value":"-dbeaver","line":48,"column":0,"depth":3},"-baserow":{"type":"header","text":"❌ Baserow","value":"-baserow","line":63,"column":0,"depth":3},"-grist":{"type":"header","text":"❓ Grist","value":"-grist","line":78,"column":0,"depth":3},"-directus":{"type":"header","text":"❓ Directus","value":"-directus","line":94,"column":0,"depth":3}},"children":[],"parent":"n9g24lal4rselnrk12kp2jv","data":{}},"body":"
22
\n
This is Maëlle's DBGI daily open-notebook.
\n
Today is 2022.09.22
\n
TODO
\n
\n
Check current db structure / AirTable
\n
Explore nocoDb
\n
Better opensource alternative to nocodb and airtable?
-✔️ user friendly interface\n -✔️ copy-paste\n -✔️ scroll\n -❓ Triggers\n -❌ online\n -❌ phone app\n -✔️ But nice web version on smartphone\n -✔️ history \n
-❌ Cloud\n -✔️ Scroll (1000)\n -✔️ Triggers\n - ~ user friendly interface\n -❌ Not easy to import from existing table\n -❌ copy-paste\n -✔️ But easy export to csv/Json/xml where you can choose which column and which items\n -❌ phone app\n -✔️ But nice web version on smartphone\n -✔️ Image as an item\n -✔️ Possibility to create a dashboard\n -✔️ Can be linked to a db (https://directus.io/#databases)\n -✔️ Backup/history via db\n - https://learndirectus.com/how-to-backup-directus/\n - -> Resolve importation problem\n -✔️ Allows Multilingual app\n \n
\n
\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/o7n5pvojo1ky0hbd86e6tst.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/o7n5pvojo1ky0hbd86e6tst.json
new file mode 100644
index 000000000000..b17a108770fb
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/o7n5pvojo1ky0hbd86e6tst.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"o7n5pvojo1ky0hbd86e6tst","title":"2022-04-25","desc":"","updated":1677162024009,"created":1650892277256,"traitIds":["journalNote"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2022.04.25","type":"note","vault":{"fsPath":"vault"},"contentHash":"0aeff7dbbf009ba04d3745b17a3f9dba","links":[],"anchors":{"starting-the-day":{"type":"header","text":"Starting the day","value":"starting-the-day","line":12,"column":0,"depth":2},"todays-todo":{"type":"header","text":"Today's Todo","value":"todays-todo","line":16,"column":0,"depth":3},"today-notes--ideas":{"type":"header","text":"Today Notes & ideas","value":"today-notes--ideas","line":22,"column":0,"depth":3},"ending-the-day":{"type":"header","text":"Ending the day","value":"ending-the-day","line":26,"column":0,"depth":2},"future-todo":{"type":"header","text":"Future Todo","value":"future-todo","line":28,"column":0,"depth":3}},"children":[],"parent":"gayd6f5rjdzpelcl7due270","data":{}},"body":"
Finish the sample of the greenhouse 5 of the Fribourg botanical garden
\n
Begin with some extractions
\n\n
\n
Today Notes & ideas
\n
Ending the day
\n
Future Todo
\n
\n
Read sample tracking
\n
Add the liste croisee final file in QGIS to add points with all the metadata
\n
Think how to add a unique code for each plant on QGIS
\n
Adding automatically the coordinates when adding a point on QGIS
\n
Find how to copy rows only if another row is not empty
\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/oa2ug1z440tznkfspdpf4fz.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/oa2ug1z440tznkfspdpf4fz.json
new file mode 100644
index 000000000000..4702023b231d
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/oa2ug1z440tznkfspdpf4fz.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.ebruelhart.2023","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345578,"created":1695629345578,"id":"oa2ug1z440tznkfspdpf4fz","desc":"","links":[],"anchors":{},"children":["rwwstq9pnk2fqonf946x951","1txptky63b0ed756t77pgub","g680xu048qanry10ggwpyth","tdh4km6qoyitvdxue4dqxlp","2cv0y9hikhbt1jjla689ern","831ax1rnra2jqycbj2lcvgq","mr13v0pgk22iz9u2st4tt1w"],"parent":"vefznkti42cod2zly25fftk","data":{},"title":"2023"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/odbw4qsh2ccq5cdtbopl9i0.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/odbw4qsh2ccq5cdtbopl9i0.json
new file mode 100644
index 000000000000..29340d9bc9b3
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/odbw4qsh2ccq5cdtbopl9i0.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.lschwegler","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345584,"created":1695629345584,"id":"odbw4qsh2ccq5cdtbopl9i0","desc":"","links":[],"anchors":{},"children":["2jubmyun9qey56cyfo8q9zy"],"parent":"rw6o4yru1k43k19sz84xt6m","data":{},"title":"Lschwegler"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/ogzue2kcra1h7e1d3jbtsfx.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/ogzue2kcra1h7e1d3jbtsfx.json
new file mode 100644
index 000000000000..d00cafe5e713
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/ogzue2kcra1h7e1d3jbtsfx.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.edefossez.2023.05","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345582,"created":1695629345582,"id":"ogzue2kcra1h7e1d3jbtsfx","desc":"","links":[],"anchors":{},"children":["dcvcu5sl58zlbzleri15w0h"],"parent":"vm01cfxjhem1j6exiizdre9","data":{},"title":"05"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/ohl18eg8zyw9wmdn4uhbpg2.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/ohl18eg8zyw9wmdn4uhbpg2.json
new file mode 100644
index 000000000000..b0ff36f393ed
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/ohl18eg8zyw9wmdn4uhbpg2.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"ohl18eg8zyw9wmdn4uhbpg2","title":"2023-04-19","desc":"","updated":1681925334625,"created":1681885792112,"traitIds":["open-notebook-lschwegler"],"custom":{},"fname":"open-notebook.dbgi.lschwegler.2023.04.19","type":"note","vault":{"fsPath":"vault"},"contentHash":"de98f1e68e0f352634acf9afde9f56df","links":[],"anchors":{"this-is-lenditas-dbgi-daily-open-notebook":{"type":"header","text":"This is Lendita's DBGI daily open-notebook.","value":"this-is-lenditas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":23,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":25,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":27,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":33,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":35,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":36,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":37,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":40,"column":0,"depth":2}},"children":[],"parent":"k1podevswt9ww6fu8pm77tt","data":{}},"body":"
So the last pictures are on iNaturalist. All samples weighed. And I couldn't quite finish collecting in the greenhouse, unfortunately. I was kicked out of the greenhouse at 6pm. But I'll finish the rest tomorrow.\nThere were discussions about the freeze dryer again. It's a bit annoying because I'll only need it 1-2 times and have to reschedule my whole week, but I'll manage somehow. I can use it this weekend from Friday morning to Monday morning.\nI'm a bit impatient that I won't be able to do it all by the end of term on 1.6. But it's not much and then in 1-2 weeks I should watch it with Pierre-Marie. Then we'll need this device (which I've now forgotten the name of). I'm curious 😊
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/oihbgu0s5xsp03f9ejl88zp.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/oihbgu0s5xsp03f9ejl88zp.json
new file mode 100644
index 000000000000..be675997a60f
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/oihbgu0s5xsp03f9ejl88zp.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"oihbgu0s5xsp03f9ejl88zp","title":"2023-05-24","desc":"","updated":1685525147333,"created":1684913916171,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.05.24","type":"note","vault":{"fsPath":"vault"},"contentHash":"783ab226f18cdf47634283f54e88a3d1","links":[],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":20,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":21,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":23,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":25,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":27,"column":0,"depth":2},"ornamental-project---preparation-of-vials-for-lc-ms-analysis":{"type":"header","text":"Ornamental project - preparation of vials for LC-MS analysis","value":"ornamental-project---preparation-of-vials-for-lc-ms-analysis","line":28,"column":0,"depth":3},"notes":{"type":"header","text":"Notes","value":"notes","line":34,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":39,"column":0,"depth":2}},"children":[],"parent":"tvdn3jw4nqebyf7hozvvddb","data":{}},"body":"
Ornamental project - preparation of vials for LC-MS analysis
\n
150 µL of extracts or blank were transfert to a vial for further analysis (orbitrap), QC was realised with 5 µL of the 38 samples. Vials were conserved at +4°C waiting for analysis
\n
labellisation :\nDBGI_xxxxxx_01_01 refer to vial prepared on may 24th and analysed with orbitrap seq : 20230529_dbgi_alc (pos & neg)
\n
Notes
\n
NMRXiv = website pour deposer ses spectres RMN
\n
Creation git repo : sur git créer le git repo ; sur le serveur dans le doc associé cloner 'git clone + code ssh'\nen local : copier le lien HTTPS, sur visualcode en local faire git clone et coller le https
\n
Todo tomorrow
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/or085pr2mnvvpcg7pwmqbuk.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/or085pr2mnvvpcg7pwmqbuk.json
new file mode 100644
index 000000000000..1d70bc313c28
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/or085pr2mnvvpcg7pwmqbuk.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"meetings.2023.02","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345554,"created":1695629345554,"id":"or085pr2mnvvpcg7pwmqbuk","desc":"","links":[],"anchors":{},"children":["29snrplphmlppuhnz6bclo6"],"parent":"mmpekeasfm3e0k7ly7k7ogw","data":{},"title":"02"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/oupip73cqrjiz3xmb3nwycd.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/oupip73cqrjiz3xmb3nwycd.json
new file mode 100644
index 000000000000..f79809d3f567
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/oupip73cqrjiz3xmb3nwycd.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"oupip73cqrjiz3xmb3nwycd","title":"2023-03-22","desc":"","updated":1679502567237,"created":1679474235569,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.03.22","type":"note","vault":{"fsPath":"vault"},"contentHash":"e9329d55c3ff1eac080d978cc6d98a30","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":85,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":89,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":93,"column":0,"depth":2}},"children":[],"parent":"ijpbaqnc0ewvgkwl0qq0m7e","data":{}},"body":"
Dask is a powerful library for parallel computing in Python, designed to handle large-scale datasets that cannot fit into memory on a single machine. Here are some advantages of using Dask to load a dataframe in Python:
\n
Scalability: Dask can handle datasets that are larger than the memory of a single machine, by breaking them down into smaller chunks and distributing the work across multiple cores and/or machines. This allows you to work with datasets that would otherwise be impossible to handle using traditional Python libraries like Pandas.\n\nFamiliar API: Dask has a Pandas-like API, which makes it easy to learn and use if you are already familiar with Pandas. This means that you can use many of the same methods and functions that you would use with a Pandas dataframe, but with the added scalability of Dask.\n\nLazy evaluation: Dask uses lazy evaluation, which means that it only computes the data when it is needed. This allows you to work with large datasets without having to load all the data into memory at once, which can save time and resources.\n\nParallel processing: Dask can use multiple cores and/or machines to process data in parallel, which can greatly speed up computations. This can be especially useful for tasks like data cleaning, transformation, and aggregation.\n\nIntegration with other libraries: Dask integrates well with other Python libraries, such as NumPy, Scikit-Learn, and TensorFlow. This allows you to use Dask in conjunction with other tools to build complex data processing and machine learning pipelines.\n
\n
Overall, using Dask to load a dataframe in Python can be advantageous when working with large datasets that cannot fit into memory on a single machine, or when you need to perform computationally intensive tasks that would benefit from parallel processing.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/oysesv3d976s837b9j76nhg.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/oysesv3d976s837b9j76nhg.json
new file mode 100644
index 000000000000..68a338cb357b
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/oysesv3d976s837b9j76nhg.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.ebruelhart.2022.03","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345572,"created":1695629345572,"id":"oysesv3d976s837b9j76nhg","desc":"","links":[],"anchors":{},"children":["7mm3yj2312qrzrcssxb7x9z","2izrjn4o1bpk2fn9wmxjnna"],"parent":"vechu9nek0ai9pac4taotye","data":{},"title":"03"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/p1jodv6f6kzp9d5pwg4i2jw.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/p1jodv6f6kzp9d5pwg4i2jw.json
new file mode 100644
index 000000000000..e83bd71b147c
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/p1jodv6f6kzp9d5pwg4i2jw.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"p1jodv6f6kzp9d5pwg4i2jw","title":"2023-04-27","desc":"","updated":1682585431616,"created":1682585415732,"traitIds":["open-notebook-lschwegler"],"custom":{},"fname":"open-notebook.dbgi.lschwegler.2023.04.27","type":"note","vault":{"fsPath":"vault"},"contentHash":"92d82b3ade956fe7e9a0eef80c4c690b","links":[],"anchors":{"this-is-lenditas-dbgi-daily-open-notebook":{"type":"header","text":"This is Lendita's DBGI daily open-notebook.","value":"this-is-lenditas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":23,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":25,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":27,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":30,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":32,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":33,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":34,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":37,"column":0,"depth":2}},"children":[],"parent":"k1podevswt9ww6fu8pm77tt","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/p2qm1kmy4dcnmxjh0agsjms.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/p2qm1kmy4dcnmxjh0agsjms.json
new file mode 100644
index 000000000000..dfe3c88784ef
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/p2qm1kmy4dcnmxjh0agsjms.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.lcappelletti.2023.08","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345583,"created":1695629345583,"id":"p2qm1kmy4dcnmxjh0agsjms","desc":"","links":[],"anchors":{},"children":["vq7ux2x2ogb8rjo948g9wrb","sx5cay1jpxz77zh0jpx24nx"],"parent":"8w3q1chl20rs3sjp6x97v18","data":{},"title":"08"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/p6xf974t6tqndzis0qjc9j6.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/p6xf974t6tqndzis0qjc9j6.json
new file mode 100644
index 000000000000..a0b5fe877541
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/p6xf974t6tqndzis0qjc9j6.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"p6xf974t6tqndzis0qjc9j6","title":"Research Proposal","desc":"","updated":1655713184019,"created":1653914626113,"custom":{},"fname":"research-proposal","type":"note","vault":{"fsPath":"vault"},"contentHash":"e0d84f4c7ee0ae429941165b9735a809","links":[{"type":"wiki","from":{"fname":"research-proposal","id":"p6xf974t6tqndzis0qjc9j6","vaultName":"vault"},"value":"user.manu","alias":"@manu","position":{"start":{"line":16,"column":1,"offset":488},"end":{"line":16,"column":6,"offset":493},"indent":[]},"xvault":false,"to":{"fname":"user.manu"}},{"type":"wiki","from":{"fname":"research-proposal","id":"p6xf974t6tqndzis0qjc9j6","vaultName":"vault"},"value":"user.manu","alias":"@manu","position":{"start":{"line":20,"column":114,"offset":686},"end":{"line":20,"column":119,"offset":691},"indent":[]},"xvault":false,"to":{"fname":"user.manu"}}],"anchors":{"notes":{"type":"header","text":"Notes","value":"notes","line":19,"column":0,"depth":1}},"children":["zue2odnpgpr8qgdzgwbxj5u"],"parent":"txkHnVTI9AawnquiublXO","data":{}},"body":"
Research Proposal
\n
A research proposal should be written in order to briefly but clearly present the DBGI to potential collaborators and funders.\nThe idea is to draft a 4-5 page proposal that could eventually be published at RIO
Make a list of botanical gardens of Switzerland\n@manu (Private)
\n
\n
\n
What is the total number of different species in Swiss botanical gardens ?\nThis should be answered. Get in touch with the guy in charge of the relational DB of species in Switzerland. Ask @manu (Private) or Alain\nThese are the Botalista people https://botalista.community/
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/p92dof7843ap4repef4b74c.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/p92dof7843ap4repef4b74c.json
new file mode 100644
index 000000000000..2e6521c0f53f
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/p92dof7843ap4repef4b74c.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"p92dof7843ap4repef4b74c","title":"2023-08-28","desc":"","updated":1693234268342,"created":1693209850576,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.08.28","type":"note","vault":{"fsPath":"vault"},"contentHash":"fe795b2f24d600ada4fa244a9a20628b","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":24,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":26,"column":0,"depth":2},"quick-chat-with-donat":{"type":"header","text":"Quick chat with Donat","value":"quick-chat-with-donat","line":28,"column":0,"depth":3},"looking-for-an-inat-data-dump":{"type":"header","text":"Looking for an iNat data dump","value":"looking-for-an-inat-data-dump","line":63,"column":0,"depth":3},"data-to-be-turned-into-a-graph":{"type":"header","text":"Data to be turned into a graph","value":"data-to-be-turned-into-a-graph","line":78,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":89,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":91,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":93,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":94,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":95,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":98,"column":0,"depth":2}},"children":[],"parent":"9gjxhmy8g78ehub7udeszxy","data":{}},"body":"
talked about the possibility of a DBGI hackaton : from collection to SPARQL query\nThe problem is that we need to lyophilize/MS in between\nThis would need to be splitted in maybe two half a week hackatons.
think of ways to push DBGI samples to GBIF, eventough they are not \"Research grade\" obervations on www.inaturalist.org\nDonat will also investigate into this
Donat mentionned we should be able to publish to GBIF without beeing an organization.\nThis isn't that clear from this page https://www.gbif.org/become-a-publisher\nNotably :
\n
\n
Note: At present, GBIF and its Participants only publish data from organizations—that is, institutions, networks and societies—rather than individuals. Options for individuals who wish to publish data include:
\n
\n
working through their affiliated organizations to seek endorsement as a publisher
\n
publishing data papers through a journal publisher with GBIF-ready software and/or hosting services
\n
sharing records through one of the many citizen science platforms that publish records to GBIF
\n
\n
\n
We have to dig this
\n
\n
Set a meeting for this Friday with Patrick and Adriano on progress of the BiCICKL TNA
\n
\n
Looking for an iNat data dump
\n
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7924439/\n20 GB in 10 minutes: a case for linking major biodiversity databases using an open socio-technical infrastructure and a pragmatic, cross-institutional collaboration
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/p9fzf7a60ileod5188l7y3h.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/p9fzf7a60ileod5188l7y3h.json
new file mode 100644
index 000000000000..49ea90ff4b13
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/p9fzf7a60ileod5188l7y3h.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.pmallard","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345606,"created":1695629345606,"id":"p9fzf7a60ileod5188l7y3h","desc":"","links":[],"anchors":{},"children":["m7rxlmot2oqmboiz9eomlja","kdf7w680pcf9ofqywy9qgyl"],"parent":"rw6o4yru1k43k19sz84xt6m","data":{},"title":"Pmallard"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/pavm24gkbkhlul1izg1yjtk.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/pavm24gkbkhlul1izg1yjtk.json
new file mode 100644
index 000000000000..81d5c26b32ad
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/pavm24gkbkhlul1izg1yjtk.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"pavm24gkbkhlul1izg1yjtk","title":"2022-12-27","desc":"","updated":1672177677833,"created":1672177161117,"traitIds":["open-notebook-pma"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2022.12.27","type":"note","vault":{"fsPath":"vault"},"contentHash":"0261ec898644784fd3dbd3a8c4c12325","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2022.12.27","id":"pavm24gkbkhlul1izg1yjtk","vaultName":"vault"},"value":"open-notebook.dbgi.setup","position":{"start":{"line":32,"column":15,"offset":867},"end":{"line":32,"column":43,"offset":895},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook.dbgi.setup"}}],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"":{"type":"header","text":"","value":"","line":16,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":17,"column":0,"depth":3},"-2":{"type":"header","text":"","value":"-2","line":18,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":20,"column":0,"depth":2},"linking-back-to-the-dendron-from-wwwdbgiorg":{"type":"header","text":"linking back to the Dendron from www.dbgi.org","value":"linking-back-to-the-dendron-from-wwwdbgiorg","line":21,"column":0,"depth":3},"paused":{"type":"header","text":"Paused","value":"paused","line":24,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":26,"column":0,"depth":2},"updated-people-list-on-the-wwwdbgiorg":{"type":"header","text":"updated people list on the www.dbgi.org","value":"updated-people-list-on-the-wwwdbgiorg","line":28,"column":0,"depth":3},"notes":{"type":"header","text":"Notes","value":"notes","line":33,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":44,"column":0,"depth":2},"-3":{"type":"header","text":"","value":"-3","line":46,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":47,"column":0,"depth":3},"-5":{"type":"header","text":"","value":"-5","line":48,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":51,"column":0,"depth":2}},"children":[],"parent":"s6ozn8k96p7yh3er2vf9q6l","data":{}},"body":"
Will need to ask for consent to all the people ans ask for a short bio
\n
Notes
\n
Didn't remember what was the shortcut to create a daily note.\nIt was lost in ... a daily note. So this means that the page should be available elsewhere.\nMaybe think of something related to amoeba pattern https://wiki.dendron.so/notes/e780000d-c784-4945-8e42-35218a3ecf10/ when notes are too big.\nThis would be a rule to get out notes from the daily notes to the main dendron. You came back to them once so it means they might have some kind of importance and that you should find them in another way then just browsing through your daily notes.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/pjuvmnjrhj2hn3d796m0hrs.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/pjuvmnjrhj2hn3d796m0hrs.json
new file mode 100644
index 000000000000..47a87a813fdd
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/pjuvmnjrhj2hn3d796m0hrs.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"pjuvmnjrhj2hn3d796m0hrs","title":"2022-12-28","desc":"","updated":1672257326365,"created":1672222662397,"traitIds":["open-notebook-pma"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2022.12.28","type":"note","vault":{"fsPath":"vault"},"contentHash":"e4c91110b303a27b38d9369fc707a1fd","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2022.12.28","id":"pjuvmnjrhj2hn3d796m0hrs","vaultName":"vault"},"value":"methodology.sample-tracking","position":{"start":{"line":30,"column":38,"offset":467},"end":{"line":30,"column":69,"offset":498},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"methodology.sample-tracking"}}],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"":{"type":"header","text":"","value":"","line":16,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":17,"column":0,"depth":3},"-2":{"type":"header","text":"","value":"-2","line":18,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":20,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":22,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":24,"column":0,"depth":2},"explanation-email-for-the-too-late-implication-in-the-external-advisory-board-of-dbgi":{"type":"header","text":"Explanation email for the (too) late implication in the External Advisory Board of DBGI","value":"explanation-email-for-the-too-late-implication-in-the-external-advisory-board-of-dbgi","line":26,"column":0,"depth":3},"notes":{"type":"header","text":"Notes","value":"notes","line":34,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":45,"column":0,"depth":2},"-3":{"type":"header","text":"","value":"-3","line":47,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":48,"column":0,"depth":3},"-5":{"type":"header","text":"","value":"-5","line":49,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":52,"column":0,"depth":2}},"children":[],"parent":"s6ozn8k96p7yh3er2vf9q6l","data":{}},"body":"
2022-12-28
\n
This is PMA's DBGI daily open-notebook.
\n
Today is 2022.12.28
\n
Todo today
\n
\n
\n
\n
Doing
\n
Paused
\n
Done
\n
Explanation email for the (too) late implication in the External Advisory Board of DBGI
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/pk5tod8gh3jg5ow9k1mba1d.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/pk5tod8gh3jg5ow9k1mba1d.json
new file mode 100644
index 000000000000..fa0f0e7ff556
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/pk5tod8gh3jg5ow9k1mba1d.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"pk5tod8gh3jg5ow9k1mba1d","title":"2023-02-20","desc":"","updated":1677160259633,"created":1676880697707,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.02.20","type":"note","vault":{"fsPath":"vault"},"contentHash":"df79d33e1692fd1062b6c55046db22a1","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":18,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":20,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":38,"column":0,"depth":2}},"children":[],"parent":"3q0f349eurhhy0r6e1to0d2","data":{}},"body":"
2023-02-20
\n
This is Maëlle's DBGI daily open-notebook.
\n
Today is 2023.02.20
\n
TODO
\n
CODE
\n
NOTES
\n
Way to improve speed of dashboard as we'll load huge amount of data:
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/prufwcq8vgbyg8z24eync0o.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/prufwcq8vgbyg8z24eync0o.json
new file mode 100644
index 000000000000..42c04185788f
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/prufwcq8vgbyg8z24eync0o.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"prufwcq8vgbyg8z24eync0o","title":"2023-01-17","desc":"","updated":1673950001591,"created":1673949283447,"traitIds":["open-notebook-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.01.17","type":"note","vault":{"fsPath":"vault"},"contentHash":"9b86ff08123d6c87c5acb81d214daac4","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":24,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":26,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":28,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":42,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":44,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":45,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":46,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":49,"column":0,"depth":2}},"children":[],"parent":"gky6rxw7vmzh944puduevsa","data":{}},"body":"
Daniel mentioned his participation in the next Swiss Citizen Science Conference https://www.citscihelvetia.ch/en/\nMentioned that we could think/present smt about citizen science aspects of DBGI or EMI\nMight be there in person.
\n
\n
Reply (PM)
\n
\n
One way I think we could connect with DBGI/EMI and the citizen sciences aspects is via the iNaturalist platform.\nI see that your workshop is on Wikidata (in part) why not explore possibilities to strengthen WD <-> iNat links ? (Not sure this is exactly citizen science though) However it could allow iNat user to fetch infor from WD or Scholia taxon\nFor now their is connection with Wikipedia see https://www.inaturalist.org/taxa/169521-Tabernaemontana-divaricata As you can see some even have a Phytochemistry section. Could be a nice way to improve chemical descriptions ?
\n
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/pwgi25wmjyo2lw342x3npi6.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/pwgi25wmjyo2lw342x3npi6.json
new file mode 100644
index 000000000000..3f0a3a8b3f4e
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/pwgi25wmjyo2lw342x3npi6.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"pwgi25wmjyo2lw342x3npi6","title":"2023-05-11","desc":"","updated":1683869987093,"created":1683793354813,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.05.11","type":"note","vault":{"fsPath":"vault"},"contentHash":"62a91130223d9cc3694d2d409833d888","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":28,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":52,"column":0,"depth":2}},"children":[],"parent":"kpf9zs71io037d9pc13w2ky","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/pydikqycpcrnouzggmjil9f.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/pydikqycpcrnouzggmjil9f.json
new file mode 100644
index 000000000000..22cf88537826
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/pydikqycpcrnouzggmjil9f.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"pydikqycpcrnouzggmjil9f","title":"drone-map","desc":"","updated":1677482339285,"created":1655665529382,"custom":{},"fname":"Bachelor-Work-2022.methodology.drone-map","type":"note","vault":{"fsPath":"vault"},"contentHash":"c8b58f6467d5ab858f0ddfe7f6d25f1e","links":[{"type":"wiki","from":{"fname":"Bachelor-Work-2022.methodology.drone-map","id":"pydikqycpcrnouzggmjil9f","vaultName":"vault"},"value":"biblio._d","position":{"start":{"line":3,"column":187,"offset":612},"end":{"line":3,"column":200,"offset":625},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"biblio._d"}},{"type":"wiki","from":{"fname":"Bachelor-Work-2022.methodology.drone-map","id":"pydikqycpcrnouzggmjil9f","vaultName":"vault"},"value":"_d","position":{"start":{"line":11,"column":136,"offset":1352},"end":{"line":11,"column":142,"offset":1358},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"_d"}}],"anchors":{"acknowledgements":{"type":"header","text":"Acknowledgements","value":"acknowledgements","line":23,"column":0,"depth":2}},"children":[],"parent":"mpboa8wpvhpygf5fw4o9v11","data":{}},"body":"
drone-map
\n
To do the drone map, we firstly put 8 ground markers (Figure 3) all around the botanical garden. Thes control points (Figure 1) are geolocated with a differential GPS that permits to obtain data with an error of less than 3 centimenters (Figure 2). After that, we make the drone fly with an app called \"DroneDeploy\" that automatically makes fly the drone (Figure 3) and takes pictures of the zone to have a complete mapping.
\n
Figure 1 : Map of the Fribourg botanical garden with control points (_d).
\n
Figure 2 : Leica differential GPS with the GSM technology
\n
Figure 3 : DJI Mavic pro 2 drone with the first ground marker
\n
With these steps, we obtain approximatively 260 high quality pictures with the geolocated ground markers visible on them. We treat them with the agisoft software to obtain the geolocated map (Figure 4) on QGIS. To see the details of the operations, you can click there.
\n
Figure 4 : DBGI map with the pilot samples (_d (Private)).
\n
To add the samples (Figure 4), we have made a vector points layer in QGIS. Then we sync this QGIS project online in QFIeldCloud. With the QField app, we can go with a smartphone on the field and add the samples one by one when we prelevate. Then, we can push the field data and synchronize them with the QGIs project
\n
Then, we can extract the WGS84 coordinates from the QGIS project in a CSV to add them on Inaturalist to have the high precision sample geolocation.
\n
Acknowledgements
\n
The creation of the drone map has been made possible with the help the Geosciences department, geography unit of the University of Fribourg. Special thanks are due to Reynald Delaloye (UNIFR) and Horst Machguth (UNIFR) for the Differential GPS and drone loan and the explanations provided about their utilisation.
\n\n\n Open the map in a new window","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/q4tfhn8lnlx20enhro8ly4y.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/q4tfhn8lnlx20enhro8ly4y.json
new file mode 100644
index 000000000000..57fd628401a6
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/q4tfhn8lnlx20enhro8ly4y.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"q4tfhn8lnlx20enhro8ly4y","title":"Daily Journal Template","desc":"","updated":1687273878211,"created":1687273878211,"custom":{},"fname":"templates.daily","type":"note","vault":{"fsPath":"vault"},"contentHash":"91a670ca2234c040e1e3810a69a8d86b","links":[{"type":"wiki","from":{"fname":"templates.daily","id":"q4tfhn8lnlx20enhro8ly4y","vaultName":"vault"},"value":"templates.daily","position":{"start":{"line":1,"column":68,"offset":67},"end":{"line":1,"column":87,"offset":86},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"templates.daily"}},{"from":{"fname":"templates.daily","id":"q4tfhn8lnlx20enhro8ly4y","vaultName":"vault"},"type":"backlink","position":{"start":{"line":1,"column":68,"offset":67},"end":{"line":1,"column":87,"offset":86},"indent":[]},"value":"templates.daily"}],"anchors":{"morning":{"type":"header","text":"Morning","value":"morning","line":16,"column":0,"depth":2},"gratitude":{"type":"header","text":"Gratitude","value":"gratitude","line":20,"column":0,"depth":3},"what-would-make-today-great":{"type":"header","text":"What would make today great?","value":"what-would-make-today-great","line":28,"column":0,"depth":3},"daily-affirmations":{"type":"header","text":"Daily affirmations","value":"daily-affirmations","line":34,"column":0,"depth":3},"evening":{"type":"header","text":"Evening","value":"evening","line":38,"column":0,"depth":2},"amazing-things-that-happened-today":{"type":"header","text":"Amazing things that happened today","value":"amazing-things-that-happened-today","line":42,"column":0,"depth":3},"how-could-i-have-made-today-even-better":{"type":"header","text":"How could I have made today even better?","value":"how-could-i-have-made-today-even-better","line":48,"column":0,"depth":3}},"children":[],"parent":"kdqbwl7mqgcpks5yv8yi9kf","data":{}},"body":"
Daily Journal Template
\n
This template was applied using the daily journal schema. Edit the Daily Journal Template note to change this template.\nTo create your own schemas to auto-apply templates when they match a hierarchy, follow the schema tutorial to get started.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/qehhmjbk7xbf3qb9pw5jiru.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/qehhmjbk7xbf3qb9pw5jiru.json
new file mode 100644
index 000000000000..a1bbc77c108d
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/qehhmjbk7xbf3qb9pw5jiru.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"qehhmjbk7xbf3qb9pw5jiru","title":"2022-05-17","desc":"","updated":1655027552105,"created":1652773379855,"traitIds":["journalNote"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2022.05.17","type":"note","vault":{"fsPath":"vault"},"contentHash":"a151ebbf2d6cff291f6811a6224fd4a0","links":[],"anchors":{"starting-the-day":{"type":"header","text":"Starting the day","value":"starting-the-day","line":12,"column":0,"depth":2},"todays-todo":{"type":"header","text":"Today's Todo","value":"todays-todo","line":16,"column":0,"depth":3},"today-notes--ideas":{"type":"header","text":"Today Notes & ideas","value":"today-notes--ideas","line":22,"column":0,"depth":3},"ending-the-day":{"type":"header","text":"Ending the day","value":"ending-the-day","line":28,"column":0,"depth":2},"future-todo":{"type":"header","text":"Future Todo","value":"future-todo","line":30,"column":0,"depth":3}},"children":[],"parent":"3ck5i1foueo5cjl270x5w3s","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/qep2u49twhwjo60ml379xu1.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/qep2u49twhwjo60ml379xu1.json
new file mode 100644
index 000000000000..de0648a30b44
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/qep2u49twhwjo60ml379xu1.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"qep2u49twhwjo60ml379xu1","title":"2023-05-23","desc":"","updated":1684844119400,"created":1684824327831,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.05.23","type":"note","vault":{"fsPath":"vault"},"contentHash":"ede3ff11ad6b1a10a1b0584af9f369c9","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":25,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":52,"column":0,"depth":2}},"children":[],"parent":"kpf9zs71io037d9pc13w2ky","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/qjst6sh69sq0jfjq6huiaes.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/qjst6sh69sq0jfjq6huiaes.json
new file mode 100644
index 000000000000..18e9e962ba61
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/qjst6sh69sq0jfjq6huiaes.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"qjst6sh69sq0jfjq6huiaes","title":"2022-12-07","desc":"","updated":1677482158795,"created":1670410438752,"traitIds":["open-notebook-eb"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2022.12.07","type":"note","vault":{"fsPath":"vault"},"contentHash":"33512f28621996a9e32a97dc0304d49d","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":16,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":18,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":20,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":224,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":226,"column":0,"depth":1}},"children":[],"parent":"jb94w8oc7a9tv04izb0g544","data":{}},"body":"
2022-12-07
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2022.12.07
\n
To do
\n
done
\n
Perspectives
\n
notes
\n
After a discussion with Pierre-Marie, it seemed not good to grind plants in advance without adding the extraction solvent (methanol 80, water 20 and formic acid 0.1). So here is the list of all extracts that have been grinded some days before adding the solvent (grinded thursday 1th december 2022 and solvent added 7th december 2022). To see the effect, 20 plants of this batch will be reextracted from the same samples and directly extracted after the grinding. These are actually not already defined, but will be selected randomly among the incrimined batch.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/qlb4frklnbw6ijvsr17f9go.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/qlb4frklnbw6ijvsr17f9go.json
new file mode 100644
index 000000000000..d162094ba010
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/qlb4frklnbw6ijvsr17f9go.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"qlb4frklnbw6ijvsr17f9go","title":"2023-05-11","desc":"","updated":1683903100232,"created":1683792193182,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.05.11","type":"note","vault":{"fsPath":"vault"},"contentHash":"0e392527bd2140a52f61094ae4dd43d9","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.alecabec.2023.05.11","id":"qlb4frklnbw6ijvsr17f9go","vaultName":"vault"},"value":"Bachelor-Work-2022","position":{"start":{"line":35,"column":51,"offset":697},"end":{"line":35,"column":73,"offset":719},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"Bachelor-Work-2022"}}],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":20,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":23,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":24,"column":0,"depth":3},"done":{"type":"header","text":"Done","value":"done","line":28,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":101,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":103,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":106,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":107,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":108,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":111,"column":0,"depth":2}},"children":[],"parent":"tvdn3jw4nqebyf7hozvvddb","data":{}},"body":"
1/ Collect plant from Jbuf (only the one in the syst. 1 / 2 and 3)
\n
\n
\n
Clematis heraclifoia
\n
\n
\n
Clematis recta
\n
\n
\n
Clematis vitalba
\n
\n
\n
Lonicera caprifolium
\n
\n
\n
Lonicera Kamtschatica
\n
\n
\n
Lonicera perclymenum
\n
\n
\n
Lonicera tatarica
\n
\n
\n
Lonicera xylosteum
\n
\n
\n
Euonymus alatus
\n
\n
\n
Euonymus europeaus
\n
\n
\n
Plant were collected according the dbgi protocole Bachelor Work 2022 ; fews leaves of plant were collected and put into coffee filter and then into a falcon with pre drilled plastic caps. Falcon are placed into liquid nitrogen during the harvesting before beeing lyophilized. Falcon are placed at -70°C before being freeze drying.
\n
Clematis florida, Clematis tangutica and Lonicera nigra from the system couldn't be collect (no leave or not enough).
\n
2/ treatment Coleus with modification of level noise (not finish pb with transfer of the dataset)
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/qrl6zp4ceeyaofhuw0pwv46.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/qrl6zp4ceeyaofhuw0pwv46.json
new file mode 100644
index 000000000000..4016553e399e
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/qrl6zp4ceeyaofhuw0pwv46.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"qrl6zp4ceeyaofhuw0pwv46","title":"Pan_2020","desc":"","updated":1656059639673,"created":1656059639673,"isDir":false,"custom":{"isDir":false},"fname":"biblio.pan_2020","type":"note","vault":{"fsPath":"vault"},"contentHash":"5c6487b922e87aaf79b5dedbacce1937","links":[{"type":"wiki","from":{"fname":"biblio.pan_2020","id":"qrl6zp4ceeyaofhuw0pwv46","vaultName":"vault"},"value":"article","position":{"start":{"line":5,"column":14,"offset":168},"end":{"line":5,"column":25,"offset":179},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"article"}},{"type":"wiki","from":{"fname":"biblio.pan_2020","id":"qrl6zp4ceeyaofhuw0pwv46","vaultName":"vault"},"value":"huiqin-pan","position":{"start":{"line":6,"column":12,"offset":191},"end":{"line":6,"column":26,"offset":205},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"huiqin-pan"}},{"type":"wiki","from":{"fname":"biblio.pan_2020","id":"qrl6zp4ceeyaofhuw0pwv46","vaultName":"vault"},"value":"changliang-yao","position":{"start":{"line":6,"column":28,"offset":207},"end":{"line":6,"column":46,"offset":225},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"changliang-yao"}},{"type":"wiki","from":{"fname":"biblio.pan_2020","id":"qrl6zp4ceeyaofhuw0pwv46","vaultName":"vault"},"value":"shuai-yao","position":{"start":{"line":6,"column":48,"offset":227},"end":{"line":6,"column":61,"offset":240},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"shuai-yao"}},{"type":"wiki","from":{"fname":"biblio.pan_2020","id":"qrl6zp4ceeyaofhuw0pwv46","vaultName":"vault"},"value":"wenzhi-yang","position":{"start":{"line":6,"column":63,"offset":242},"end":{"line":6,"column":78,"offset":257},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"wenzhi-yang"}},{"type":"wiki","from":{"fname":"biblio.pan_2020","id":"qrl6zp4ceeyaofhuw0pwv46","vaultName":"vault"},"value":"wanying-wu","position":{"start":{"line":6,"column":80,"offset":259},"end":{"line":6,"column":94,"offset":273},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"wanying-wu"}},{"type":"wiki","from":{"fname":"biblio.pan_2020","id":"qrl6zp4ceeyaofhuw0pwv46","vaultName":"vault"},"value":"dean-guo","position":{"start":{"line":6,"column":96,"offset":275},"end":{"line":6,"column":108,"offset":287},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"dean-guo"}},{"type":"wiki","from":{"fname":"biblio.pan_2020","id":"qrl6zp4ceeyaofhuw0pwv46","vaultName":"vault"},"value":"03.2020","position":{"start":{"line":7,"column":9,"offset":296},"end":{"line":7,"column":20,"offset":307},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"03.2020"}},{"type":"wiki","from":{"fname":"biblio.pan_2020","id":"qrl6zp4ceeyaofhuw0pwv46","vaultName":"vault"},"value":"2022-03-01","position":{"start":{"line":8,"column":15,"offset":322},"end":{"line":8,"column":29,"offset":336},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-03-01"}},{"type":"wiki","from":{"fname":"biblio.pan_2020","id":"qrl6zp4ceeyaofhuw0pwv46","vaultName":"vault"},"value":"extraction-method","position":{"start":{"line":12,"column":11,"offset":568},"end":{"line":12,"column":32,"offset":589},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"extraction-method"}},{"type":"wiki","from":{"fname":"biblio.pan_2020","id":"qrl6zp4ceeyaofhuw0pwv46","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":13,"column":3,"offset":592},"end":{"line":13,"column":10,"offset":599},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio.pan_2020","id":"qrl6zp4ceeyaofhuw0pwv46","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":13,"column":12,"offset":601},"end":{"line":13,"column":29,"offset":618},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio.pan_2020","id":"qrl6zp4ceeyaofhuw0pwv46","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":13,"column":31,"offset":620},"end":{"line":13,"column":41,"offset":630},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}}],"anchors":{"a-metabolomics-strategy-for-authentication-of-plant-medicines-with-multiple-botanical-origins-a-case-study-of-uncariae-rammulus-cum-uncis":{"type":"header","text":"A metabolomics strategy for authentication of plant medicines with multiple botanical origins, a case study of Uncariae Rammulus Cum Uncis","value":"a-metabolomics-strategy-for-authentication-of-plant-medicines-with-multiple-botanical-origins-a-case-study-of-uncariae-rammulus-cum-uncis","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":25,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
Pan_2020
\n
A metabolomics strategy for authentication of plant medicines with multiple botanical origins, a case study of Uncariae Rammulus Cum Uncis
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/qug423ond4xtns8lelu38p2.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/qug423ond4xtns8lelu38p2.json
new file mode 100644
index 000000000000..50d7bd4ccbbb
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/qug423ond4xtns8lelu38p2.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"qug423ond4xtns8lelu38p2","title":"Local project","desc":"","updated":1685099398875,"created":1680685151204,"custom":{},"fname":"Field setup.Local project","type":"note","vault":{"fsPath":"vault"},"contentHash":"e5f056be245aa9f76b663b9dec2d721c","links":[],"anchors":{"here-you-can-find-informations-to-set-up-the-field-project-create-new-layers-projects-change-settings-":{"type":"header","text":"Here you can find informations to set up the field project (create new layers, projects, change settings, ...)","value":"here-you-can-find-informations-to-set-up-the-field-project-create-new-layers-projects-change-settings-","line":7,"column":0,"depth":2},"first-step-download-qgis":{"type":"header","text":"First step: Download QGIS","value":"first-step-download-qgis","line":9,"column":0,"depth":3},"second-step-open-qgis-and-install-qfieldsync-plugin":{"type":"header","text":"Second step: Open QGIS and install QFieldSync plugin:","value":"second-step-open-qgis-and-install-qfieldsync-plugin","line":12,"column":0,"depth":3},"third-step-first-synchronization-from-the-server":{"type":"header","text":"Third step: First synchronization from the server:","value":"third-step-first-synchronization-from-the-server","line":15,"column":0,"depth":3},"to-create-a-layer-for-the-collection":{"type":"header","text":"To create a layer for the collection","value":"to-create-a-layer-for-the-collection","line":18,"column":0,"depth":3}},"children":[],"parent":"nat1tahs5uze95g4vu680dk","data":{}},"body":"
Local project
\n
Here you can find informations to set up the field project (create new layers, projects, change settings, ...)
Second step: Open QGIS and install QFieldSync plugin:
\n
Go to the \"Plugins\" tab, \"Manage and install plugins...\" -> \"All\" and search for \"QField Sync\". Install it.
\n
Third step: First synchronization from the server:
\n
Go to the \"Plugins\" tab, \"QFieldSync\" -> \"QFieldCloud Projects Overview\". Double click on the bee logo, a new field called \"Server URL\" will appear. Fill it with \"https://dbgimap.hopto.org/\" and enter you username and password you used to register on https://dbgimap.hopto.org/accounts/signup/. Click Sign In. You will see appear the projects list. click on the one you want to participate and clik on the \"Synchronize Selected Cloud Project\". Select the location where you want to save the project's folder. Now you have a local copy of the project on your computer.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/qzue59bpc7karf19b75eb6v.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/qzue59bpc7karf19b75eb6v.json
new file mode 100644
index 000000000000..4ec292680d75
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/qzue59bpc7karf19b75eb6v.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"qzue59bpc7karf19b75eb6v","title":"2023-05-16","desc":"","updated":1684252724159,"created":1684232886457,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.05.16","type":"note","vault":{"fsPath":"vault"},"contentHash":"a728529fba15902c28379eb17ae9c5b6","links":[],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":21,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":24,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":25,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":27,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":29,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":31,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":33,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":35,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":37,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":38,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":39,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":42,"column":0,"depth":2}},"children":[],"parent":"tvdn3jw4nqebyf7hozvvddb","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/r023k94i45yeev1um5o4hv6.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/r023k94i45yeev1um5o4hv6.json
new file mode 100644
index 000000000000..28fa010312df
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/r023k94i45yeev1um5o4hv6.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"r023k94i45yeev1um5o4hv6","title":"2022-12-23","desc":"","updated":1671787282564,"created":1671782362233,"traitIds":["open-notebook-eb"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2022.12.23","type":"note","vault":{"fsPath":"vault"},"contentHash":"9b3ce016fc0d3beaec3914cafa4bd6f3","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":26,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":30,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":32,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":37,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":39,"column":0,"depth":1}},"children":[],"parent":"jb94w8oc7a9tv04izb0g544","data":{}},"body":"
2022-12-23
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2022.12.23
\n
To do
\n
\n
\n
Relabel the falcon with the bigger labels
\n
\n
\n
Try to host correctly the dbgi maps with geoserver
\n
\n
\n
Prepare the inserts for the mass spec analysis
\n
\n
\n
Optimize the communication between QGIS and iNaturalist
\n
\n
\n
Find a way to update CSVs with other CSVs without loosing information marked
\n
\n
\n
done
\n
\n
Find a way to update CSVs with other CSVs without loosing information marked
\n
\n
Perspectives
\n
notes
\n
To update CSV from QField you just have to download the CSV from QGIS on the git folder on your computer (QField_csv). Pay attention to replace the correct input CSV (for JBUF system it's System_JBUF.csv for example). If the input CSV has not a correct name, it will not be recognized by the Rcode. When it's done, you just have to execute the Coordinates_convertor.R code, and all will be made automatically to update the final CSV called WGS84_System_JBUF.csv. Pay attention that excel breaks all the process by replacing commas by semicolon. So I found a better way to open and modify CSVs without corrupting it, that is janisdd.vscode-edit-csv. You can download it directly from VS code. When a CSV is opened in VS code, a little button in the full right of the VS code windows bar appears saying Edit csv. If you click on it a CSV editor will open, very intuitive and sufficient to make the operations needed, like entering the weight of the plants. Then you just have to save directly in the interface, then push and the modifications are saved. The RCode then is made to not overwrite these informations, but to update the Reference CSV with the CSV containing new harvested samples.
\n
There is a TSV file created too with the same name. Please don't edit it. All that is edited in the TSV file will be lost. To make modifications, just use the CSV file.
\n
code
\n
links
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/r0xxex1f9ay56gbvbxordyv.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/r0xxex1f9ay56gbvbxordyv.json
new file mode 100644
index 000000000000..628388db9eb2
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/r0xxex1f9ay56gbvbxordyv.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"r0xxex1f9ay56gbvbxordyv","title":"2023-02-23","desc":"","updated":1678279640647,"created":1677159799519,"traitIds":["open-notebook-lschwegler"],"custom":{},"fname":"open-notebook.dbgi.lschwegler.2023.02.23","type":"note","vault":{"fsPath":"vault"},"contentHash":"98b00182a4624c37438b7a3b4907fdb3","links":[],"anchors":{"this-is-lenditas-dbgi-daily-open-notebook":{"type":"header","text":"This is Lendita's DBGI daily open-notebook.","value":"this-is-lenditas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":23,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":25,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":58,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":68,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":70,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":71,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":72,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":75,"column":0,"depth":2}},"children":[],"parent":"5bn9phwme3mwpqs2gxa0ydc","data":{}},"body":"
After the meeting yesterday, Edouard helped me download Dendron, GitHub, Zulip, QField and installed everything I needed. That took some time after all...
\n
Today we finished the installations of the various platforms I need to work. That also took time and patience ;).
\n
Edourad showed me what we need to collect the samples in the greenhouse.
\n
\n
kitchen paper
\n
gloves
\n
Tube with the Q-code
\n
Scalpel
\n
Coffee filter paper
\n
Disinfectant (ethanol)
\n
Liquid nitrogen
\n
Mobile phone with the QField app
\n
\n
I took a few samples of the plants in the greenhouse where the succulents and cacti are. To test the drying method I also took two samples from each plant: one sliced and one not.
\n
\n
dbgi_000921: sliced and dbgi_000919: not sliced ---> XXX
\n
dbgi_000992: sliced and dbgi_001013: not sliced -->XXX
\n
dbgi_000991: sliced and dbgi_000913: not sliced
\n
dbgi_000915: sliced and dbgi_001017: not sliced -->XXX
\n
dbgi_000922: sliced and dbgi_000998: not sliced
\n
\n
Sampling the plants in the greenhouse:
\n
\n
Marking the exact location in the QField app on the map of the Botanic Garden.
\n
Find the name of the corresponding plant
\n
Scan the Q-code of the tube
\n
Take pictures: 1. picture of the panel, 2. whole picture of the plant with the red arrow pointing to the plant, 3. picture of details of the plant, 4. picture of the cut of the plant, 5. picture of the tube and the panel together
\n
Clean scalpel with ethanol
\n
Remove plant sample with scalpel, wrap in coffee filter paper, put in tube and place in box with liquid nitrogen.
\n
Clean the scalpel again with ethanol for the next sample.
\n
\n
We then froze the tubes at -68 degrees.
\n
Notes
\n
Today I collected some plants to test the drying method. Here are the couples of each plant, once sliced, once not:
\n
\n
dbgi_000921: sliced and dbgi_000919: not sliced
\n
dbgi_000992: sliced and dbgi_001013: not sliced
\n
dbgi_000991: sliced and dbgi_000913: not sliced
\n
dbgi_000915: sliced and dbgi_001017: not sliced
\n
dbgi_000922: sliced and dbgi_000998: not sliced
\n
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/r16a9pqpiqrcfr7y0tayfqd.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/r16a9pqpiqrcfr7y0tayfqd.json
new file mode 100644
index 000000000000..f2739a64fcea
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/r16a9pqpiqrcfr7y0tayfqd.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"r16a9pqpiqrcfr7y0tayfqd","title":"2023-03-23","desc":"","updated":1679580135286,"created":1679575906957,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.03.23","type":"note","vault":{"fsPath":"vault"},"contentHash":"d06e454b5bdee8c089a12562add93861","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":27,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":31,"column":0,"depth":2}},"children":[],"parent":"ijpbaqnc0ewvgkwl0qq0m7e","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/r21vjrdpd8liy5fs5kavga8.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/r21vjrdpd8liy5fs5kavga8.json
new file mode 100644
index 000000000000..58f1e44dc2bc
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/r21vjrdpd8liy5fs5kavga8.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"r21vjrdpd8liy5fs5kavga8","title":"Chen_2014","desc":"","updated":1656059639673,"created":1656059639673,"isDir":false,"custom":{"isDir":false},"fname":"biblio.chen_2014","type":"note","vault":{"fsPath":"vault"},"contentHash":"5ef95188a5f85f5b6a7ed06f4ea6a59c","links":[{"type":"wiki","from":{"fname":"biblio.chen_2014","id":"r21vjrdpd8liy5fs5kavga8","vaultName":"vault"},"value":"article","position":{"start":{"line":5,"column":14,"offset":104},"end":{"line":5,"column":25,"offset":115},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"article"}},{"type":"wiki","from":{"fname":"biblio.chen_2014","id":"r21vjrdpd8liy5fs5kavga8","vaultName":"vault"},"value":"ruizhi-chen","position":{"start":{"line":6,"column":12,"offset":127},"end":{"line":6,"column":27,"offset":142},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"ruizhi-chen"}},{"type":"wiki","from":{"fname":"biblio.chen_2014","id":"r21vjrdpd8liy5fs5kavga8","vaultName":"vault"},"value":"tianxing-chu","position":{"start":{"line":6,"column":29,"offset":144},"end":{"line":6,"column":45,"offset":160},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"tianxing-chu"}},{"type":"wiki","from":{"fname":"biblio.chen_2014","id":"r21vjrdpd8liy5fs5kavga8","vaultName":"vault"},"value":"jingbin-liu","position":{"start":{"line":6,"column":47,"offset":162},"end":{"line":6,"column":62,"offset":177},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"jingbin-liu"}},{"type":"wiki","from":{"fname":"biblio.chen_2014","id":"r21vjrdpd8liy5fs5kavga8","vaultName":"vault"},"value":"xiao-li","position":{"start":{"line":6,"column":64,"offset":179},"end":{"line":6,"column":75,"offset":190},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"xiao-li"}},{"type":"wiki","from":{"fname":"biblio.chen_2014","id":"r21vjrdpd8liy5fs5kavga8","vaultName":"vault"},"value":"y.-chen","position":{"start":{"line":6,"column":77,"offset":192},"end":{"line":6,"column":88,"offset":203},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"y.-chen"}},{"type":"wiki","from":{"fname":"biblio.chen_2014","id":"r21vjrdpd8liy5fs5kavga8","vaultName":"vault"},"value":"liang-chen","position":{"start":{"line":6,"column":90,"offset":205},"end":{"line":6,"column":104,"offset":219},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"liang-chen"}},{"type":"wiki","from":{"fname":"biblio.chen_2014","id":"r21vjrdpd8liy5fs5kavga8","vaultName":"vault"},"value":"w.-xu","position":{"start":{"line":6,"column":106,"offset":221},"end":{"line":6,"column":115,"offset":230},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"w.-xu"}},{"type":"wiki","from":{"fname":"biblio.chen_2014","id":"r21vjrdpd8liy5fs5kavga8","vaultName":"vault"},"value":"2014-01-01","position":{"start":{"line":7,"column":9,"offset":239},"end":{"line":7,"column":23,"offset":253},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2014-01-01"}},{"type":"wiki","from":{"fname":"biblio.chen_2014","id":"r21vjrdpd8liy5fs5kavga8","vaultName":"vault"},"value":"2022-03-31","position":{"start":{"line":8,"column":15,"offset":268},"end":{"line":8,"column":29,"offset":282},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-03-31"}},{"type":"wiki","from":{"fname":"biblio.chen_2014","id":"r21vjrdpd8liy5fs5kavga8","vaultName":"vault"},"value":"gnss-location","position":{"start":{"line":10,"column":11,"offset":315},"end":{"line":10,"column":28,"offset":332},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"gnss-location"}},{"type":"wiki","from":{"fname":"biblio.chen_2014","id":"r21vjrdpd8liy5fs5kavga8","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":11,"column":3,"offset":335},"end":{"line":11,"column":10,"offset":342},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio.chen_2014","id":"r21vjrdpd8liy5fs5kavga8","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":11,"column":12,"offset":344},"end":{"line":11,"column":29,"offset":361},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio.chen_2014","id":"r21vjrdpd8liy5fs5kavga8","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":11,"column":31,"offset":363},"end":{"line":11,"column":41,"offset":373},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}}],"anchors":{"dgnss-c-a-differential-solution-for-enhancing-smartphone-gnss-performance":{"type":"header","text":"DGNSS-C: A differential solution for enhancing smartphone GNSS performance","value":"dgnss-c-a-differential-solution-for-enhancing-smartphone-gnss-performance","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"abstract":{"type":"header","text":"Abstract","value":"abstract","line":22,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":27,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
Chen_2014
\n
DGNSS-C: A differential solution for enhancing smartphone GNSS performance
The current smartphone Software Development Kit (SDK) does not have open Application Programming Interface (API) to access raw GNSS measurements (e.g., pseudoranges) outputted from the built-in receivers in smartphones. This becomes a direct obstacle for using techniques such as Differential GNSS (DGNSS) in smartphones for enhancing the positioning accuracy. Without the need to access raw measurements, this paper presents a differential solution, differential GNSS in coordinate domain (DGNSS-C), based on smartphones. By carrying out DGNSS computation in the coordinate domain, the DGNSS-C algorithm utilizes the pseudorange corrections to estimate the coordinate corrections, and applies the coordinate corrections to the initial coordinates obtained from the GNSS chipset. The field test demonstrates that the DGNSS-C algorithm enhances the positioning accuracy by 30-40% in terms of 3D error, and the performances vary in different phones due to different chipset designs that might give rise to model errors in the DGNSS-C correction processing. Copyright
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/r8fvke0zeetxl3wyxvnys0r.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/r8fvke0zeetxl3wyxvnys0r.json
new file mode 100644
index 000000000000..22eb007b2b3e
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/r8fvke0zeetxl3wyxvnys0r.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"r8fvke0zeetxl3wyxvnys0r","title":"2023-07-26","desc":"","updated":1690371320887,"created":1690362219495,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.07.26","type":"note","vault":{"fsPath":"vault"},"contentHash":"0c10d986ecd4962577ec0a74ae664c86","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":114,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":116,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":118,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":120,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":122,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":123,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":124,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":127,"column":0,"depth":2}},"children":[],"parent":"vvcscq2gtvhdsmtmbqfqjqb","data":{}},"body":"
“Match columns” vs Key columns\nIn relational database systems, data in different tables is always linked when a value in a column in one table precisely matches a corresponding value in a column in the other table. In some platforms these are called “match fields” (“match columns”). Most of the time database developers like me call these “key” fields. But there may be a useful distinction between “match columns” and “key columns”.
\n
As I said, keys should be unique (within their table) and immutable; and I went on to say that one of the ways you make a key value immutable is by making it meaningless outside the database. Properly generated keys tend to look like this: “UmNygMQcY1twgeD9r”.
\n
The problem is, precisely because good key values are meaningless to us humans, it’s rather awkward for us to use them. We don’t like to look at values like UmNygMQcY1twgeD9r, we find it extremely hard to pick UmNygMQcY1twgeD9r out of a list that also includes rMqkwlLC5eMx77Hsp etc. Your eyes are probably getting blurry reading this paragraph. :slightly_smiling_face:
\n
This is why Airtable hides these values from us. Instead, in Airtable we get what I would call match fields. When a new order comes in, we switch to a view of the Orders table, click into the Accounts column (which is a Link to Another Table column) and Airtable shows us a list of known accounts, by name, so it’s easy for us to pick the right one. Behind the scenes, of course, meaningless key values are being used to link the order to the account, but we don’t see any of that.
\n
So the match field is the meaningful token that allows us human beings to use the base; but invisible, meaningless key values are used to make the actual links between tables. And because that’s the case, if we change the name of the Acme account from Acme Inc to Acme Industries LLP, none of the links between Acme and its orders get broken. The invisible, meaningless IDs did not change.
\n
.
\n
Match values not always unique!\nNow, here’s where it gets tricky. Primary keys (i.e. the key values in the One tables) must be unique. But the column we most naturally use as a match column sometimes will include duplicates, or more precisely, not “duplicates” but rather, values that are not unique. (This is an important distinction. The result of 2 + 5 is the same as the result of 4 + 3, but the first 7 is not a “duplicate” of the second 7. They’re just both 7s.)
\n
I build systems in which the top level table in the hierarchy is almost always a list of people–typically, hundreds or thousands of people. I see a lot of this sort of thing:
\n
Candace Moreno\nCarlos Garcia\nCarlos Garcia\nCatherine Lawrence\nSometimes we can determine that the first Carlos Garcia is actually Carlos Garcia, Sr., and the second one is Carlos Garcia, Jr. That helps. But we can’t always do this. Or perhaps we have middle names–but often we don’t. Sometimes you just have two or more records with identical names.
\n
Once we are able to figure out that it’s the first Carlos Garcia that we want, then the link between him and (say) the rows in the Orders table that belong to him will be made using the invisible key values, and everything is fine from that point on. But Which Carlos Garcia? is a question that occurs a lot, in Airtable and in other database systems as well. It’s a big deal for example when you Google a name like “John Adams”, or when you look for a name in the huge database known as Wikipedia. See for example this page which attempts to “disambiguate” the name John Adams.
\n
So we tend to create meaningful distinguishers to help us keep things apart. In my systems I’ll often write a calc that puts the first name, middle name, last name, name suffix and birth date into a single column. So users can see something like this:
\n
Carlos M Garcia (4/1/1980)\nCarlos Garcia, Sr. (8/18/1968)\nThese are easy calcs to write. In Airtable, we’ll often write a calc like this and use it as the primary column for the table. If you’re dealing with a table where every record = a person, and the name and birthdate are not reliably distinct, you might have to add some other column like Zip Code or drivers license number or whatever you’ve got. Then when you link to that person’s record from a Many table, in Airtable the “Link to Another Table” will use that calculated column as the match column.
\n
I suspect this may be exactly what you need to do in your system. Create a primary column that is a formula field containing several values that give you a unique result.
\n
.
\n
But the key values are always the most important thing!\nStill, it’s always the hidden key values that do the real linking. So if your base includes, say, three or four or five tables (not just two), and you’re implementing the suggestions I gave you earlier about using the RECORD_ID() function to get primary key values out into the open, then you just need to do the same thing for all the tables in your base. In other words, in every table, a field named Record_ID that gets that row’s primary key value, and also in every Many or “Child” table, a field named something like Parent_Record_ID that looks up the Record_ID value from the linked parent record.
\n
Then if you export your multi-table base’s data to another system, you make sure to export those key columns as well.
\n
.
\n
Too much work?\nYeah, it’s a little bit of work. But you don’t have to worry about the key columns at all if your system is never going to leave Airtable. And while we often do have to create those “disambiguated” primary column calculations, they not too hard.
\n
The truth is, Airtable isn’t really all that easy, once you go beyond grocery lists. But the same can be said of every database system I know, and I’m familar with quite a few.
\n
\n
Paused
\n
Done
\n
Notes
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/rd064po8dsa3zn3qo2q2b3x.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/rd064po8dsa3zn3qo2q2b3x.json
new file mode 100644
index 000000000000..ce1c3f52c7b1
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/rd064po8dsa3zn3qo2q2b3x.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"rd064po8dsa3zn3qo2q2b3x","title":"2023-03-08","desc":"","updated":1678295066272,"created":1678263794997,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.03.08","type":"note","vault":{"fsPath":"vault"},"contentHash":"690e6f236449e0b5aceb14feba2d5c13","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.mwannier.2023.03.08","id":"rd064po8dsa3zn3qo2q2b3x","vaultName":"vault"},"value":"open-notebook.dbgi.mwannier.2023.02.23","position":{"start":{"line":31,"column":1,"offset":756},"end":{"line":31,"column":46,"offset":801},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook.dbgi.mwannier.2023.02.23"}}],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":22,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":24,"column":0,"depth":2},"dbgi-meeting":{"type":"header","text":"DBGI meeting","value":"dbgi-meeting","line":29,"column":0,"depth":3},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":49,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":53,"column":0,"depth":2}},"children":[],"parent":"ijpbaqnc0ewvgkwl0qq0m7e","data":{}},"body":"
First worked on the sample tracking part\n=> created db with data from iNaturalist & samples info\n=> nocode interface -> directus (http://directus.dbgi.org)
\n\n\n
Establishment of a data visualization interface for the DBGI\n=> plotly dashboard (https://dash.gallery/Portal/)
Until now: tried to create a small dashboard to test multiple libraries on LOTUS db
\n
TODO NEXT
\n
Important for redaction
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/ri4no5zpfcj6m7ugodevmyo.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/ri4no5zpfcj6m7ugodevmyo.json
new file mode 100644
index 000000000000..62c929ef0706
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/ri4no5zpfcj6m7ugodevmyo.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"meetings","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345553,"created":1695629345553,"id":"ri4no5zpfcj6m7ugodevmyo","desc":"","links":[],"anchors":{},"children":["mmpekeasfm3e0k7ly7k7ogw"],"parent":"txkHnVTI9AawnquiublXO","data":{},"title":"Meetings"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/rih8wws5mmrvm6g8ydquoak.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/rih8wws5mmrvm6g8ydquoak.json
new file mode 100644
index 000000000000..fead712104c9
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/rih8wws5mmrvm6g8ydquoak.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"rih8wws5mmrvm6g8ydquoak","title":"2023-09-21","desc":"","updated":1695304844033,"created":1695289345645,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.09.21","type":"note","vault":{"fsPath":"vault"},"contentHash":"9afb2d6a51020b26504ff3705ffd9e55","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":55,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":57,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":59,"column":0,"depth":2},"todo-tomorrow-one-day--or-never":{"type":"header","text":"Todo tomorrow, one day ... or never","value":"todo-tomorrow-one-day--or-never","line":61,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":63,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":64,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":65,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":68,"column":0,"depth":2}},"children":[],"parent":"3gtlbi2k7w3yr100owwky6q","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/rio2nla30r2q15iabe8v1dh.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/rio2nla30r2q15iabe8v1dh.json
new file mode 100644
index 000000000000..21f89eaa580d
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/rio2nla30r2q15iabe8v1dh.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.mwannier.2022.12","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345590,"created":1695629345590,"id":"rio2nla30r2q15iabe8v1dh","desc":"","links":[],"anchors":{},"children":["zmxxhzyjnkoz3urerxjpo2i","mo79h9s695a4xdagcvnqdpm","eocbgirydyjhlyqx2oscr3g","rjpsp1q81ug71ochxwcxk4s","5ioljyxkuh1yfeq1ivfi0p4","201sb3u0xjqdjeqmvz4hh7w"],"parent":"ebf7zmqp4iniyzz0xs0grhw","data":{},"title":"12"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/rjpsp1q81ug71ochxwcxk4s.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/rjpsp1q81ug71ochxwcxk4s.json
new file mode 100644
index 000000000000..a8b921777684
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/rjpsp1q81ug71ochxwcxk4s.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"rjpsp1q81ug71ochxwcxk4s","title":"2022-12-15","desc":"","updated":1671112045768,"created":1671089514425,"traitIds":["open-notebook-mw"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2022.12.15","type":"note","vault":{"fsPath":"vault"},"contentHash":"527413249405136adadd67ad95d94eb0","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":20,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"meeting-with-pma":{"type":"header","text":"Meeting with pma","value":"meeting-with-pma","line":26,"column":0,"depth":3},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":36,"column":0,"depth":2}},"children":[],"parent":"rio2nla30r2q15iabe8v1dh","data":{}},"body":"
2022-12-15
\n
This is Maëlle's DBGI daily open-notebook.
\n
Today is 2022.12.15
\n
TODO
\n
\n
meeting with pma
\n
\n
CODE
\n
NOTES
\n
Meeting with pma
\n
\n
\n
directus dashboard
\n
\n
\n
directus module bar
\n
\n
\n
url
\n
\n
\n
dbgi id with dictionary
\n
\n
\n
evaluation
\n
\n
\n
MSc thesis
\n
\n
\n
TODO NEXT
\n
\n
link naturalist id pyinat-samples
\n
add edited by/when column
\n
autoincrementation id
\n
tuto for dummy
\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/rk9oklb4re880xcje8k6vms.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/rk9oklb4re880xcje8k6vms.json
new file mode 100644
index 000000000000..1e1a293012ca
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/rk9oklb4re880xcje8k6vms.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"rk9oklb4re880xcje8k6vms","title":"2023-02-22","desc":"","updated":1677084436649,"created":1677084436649,"traitIds":["open-notebook-ebruelhart"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2023.02.22","type":"note","vault":{"fsPath":"vault"},"contentHash":"32f70ec51cbac3c9ee89ae5b144e336e","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":16,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":18,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":20,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":22,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":24,"column":0,"depth":1}},"children":[],"parent":"1txptky63b0ed756t77pgub","data":{}},"body":"
2023-02-22
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2023.02.22
\n
To do
\n
done
\n
Perspectives
\n
notes
\n
code
\n
links
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/rltu335hfod26bbbcgbt7co.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/rltu335hfod26bbbcgbt7co.json
new file mode 100644
index 000000000000..9054201e29b7
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/rltu335hfod26bbbcgbt7co.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"rltu335hfod26bbbcgbt7co","title":"2023-04-17","desc":"","updated":1681738220470,"created":1681716651753,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.04.17","type":"note","vault":{"fsPath":"vault"},"contentHash":"cf61bb57b653fa02cb0594e78f6b161b","links":[],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":21,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":24,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":25,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":27,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":29,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":31,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":36,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":46,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":49,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":50,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":51,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":54,"column":0,"depth":2}},"children":[],"parent":"kc7cc1lgen7049um6b9vb1q","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/roromv02kixlcl9knjd9m7u.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/roromv02kixlcl9knjd9m7u.json
new file mode 100644
index 000000000000..4f07171795ed
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/roromv02kixlcl9knjd9m7u.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"roromv02kixlcl9knjd9m7u","title":"2023-06-06","desc":"","updated":1686057355496,"created":1686057318692,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.06.06","type":"note","vault":{"fsPath":"vault"},"contentHash":"ea52d503a278fc7f3d6e052d76f0f309","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"todo-browse-whole-dataset":{"type":"header","text":"TODO Browse whole dataset","value":"todo-browse-whole-dataset","line":21,"column":0,"depth":3},"code":{"type":"header","text":"CODE","value":"code","line":41,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":43,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":45,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":70,"column":0,"depth":2}},"children":[],"parent":"0rjtydgu2hme3vo7hu0vkj8","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/rw6o4yru1k43k19sz84xt6m.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/rw6o4yru1k43k19sz84xt6m.json
new file mode 100644
index 000000000000..4bd2bd929093
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/rw6o4yru1k43k19sz84xt6m.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345548,"created":1695629345548,"id":"rw6o4yru1k43k19sz84xt6m","desc":"","links":[],"anchors":{},"children":["khvagputmfl3gro5zswusl1","j4v04q38afih8of12i40b6r","vefznkti42cod2zly25fftk","lrlb8u9vx1lu5gvg7bbzu5i","07v05lsxheiyzag47lp0ra7","odbw4qsh2ccq5cdtbopl9i0","txikxbizqd293ie392vvl79","p9fzf7a60ileod5188l7y3h"],"parent":"k75suoydmrafnd5wl2tar2u","data":{},"title":"Dbgi"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/rwwstq9pnk2fqonf946x951.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/rwwstq9pnk2fqonf946x951.json
new file mode 100644
index 000000000000..9645b310ed1c
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/rwwstq9pnk2fqonf946x951.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.ebruelhart.2023.01","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345578,"created":1695629345578,"id":"rwwstq9pnk2fqonf946x951","desc":"","links":[],"anchors":{},"children":["5j6lia7v41dxhaatzsjvc6p","zpzzdrcy89x64qt3ak35l1p","19o3nwq1e2cbfwun1sbw2p5","uu8fzox520jcg1eskjku4kb","iixu13fbgz6uivuvl06bc0f","nzxo4k19o233nuxo88k7fyi"],"parent":"oa2ug1z440tznkfspdpf4fz","data":{},"title":"01"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/s2yk1218knhq5lbnaju4z85.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/s2yk1218knhq5lbnaju4z85.json
new file mode 100644
index 000000000000..78fa207f2b5a
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/s2yk1218knhq5lbnaju4z85.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"s2yk1218knhq5lbnaju4z85","title":"2023-04-18","desc":"","updated":1681828302743,"created":1681817467213,"traitIds":["open-notebook-ebruelhart"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2023.04.18","type":"note","vault":{"fsPath":"vault"},"contentHash":"178c560d6a0268086c9c088519686144","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":16,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":18,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":20,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":38,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":40,"column":0,"depth":1}},"children":[],"parent":"tdh4km6qoyitvdxue4dqxlp","data":{}},"body":"
2023-04-18
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2023.04.18
\n
To do
\n
done
\n
Perspectives
\n
notes
\n
Today I succeeded to add the DBGI code automatically in iNaturalist by modifying the pictures metadata. Here is how to do it:
I have actually a problem with the set up of the API to generate automatically the csv from QField. It seems that the QFieldCloud set-up is not properly made to manage the API. I'll see that later.
\n
The DBGI code is no more added in the observation field section, but in the tags section. I discussed with Pierre-Marie and Emmanuel and it's not so bad, I just have to add the identifier as a prefix in the format emi_external_id:dbgi_123456. I have to discuss with Maelle, because this change will affect the export bot for iNaturalist.
\n
The goal is then to create automated scripts that will execute automatically once a day. This will permit to treat the pictures automatically, and so improve a lot the iNaturalist import. The pictures will be processed (add of coordinates and DBGI code and a compression process if they are bigger than 5MB) and then stored on a cloud instance (probably Nextcloud, that I can self-host on my server). With that, the iNaturalist import can be done with a click bot, or rapidly done by hand.
\n
It's all for today.
\n
code
\n
links
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/s31xn7xb1bk6xuusjykyfgv.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/s31xn7xb1bk6xuusjykyfgv.json
new file mode 100644
index 000000000000..3e9e576db6b3
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/s31xn7xb1bk6xuusjykyfgv.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.alecabec.2023","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345557,"created":1695629345557,"id":"s31xn7xb1bk6xuusjykyfgv","desc":"","links":[],"anchors":{},"children":["kc7cc1lgen7049um6b9vb1q","tvdn3jw4nqebyf7hozvvddb","4vdnom6lqejdj7tre2evd8z"],"parent":"j4v04q38afih8of12i40b6r","data":{},"title":"2023"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/s4yrrlsfdr7hzpua0oymim6.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/s4yrrlsfdr7hzpua0oymim6.json
new file mode 100644
index 000000000000..be2d327ee363
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/s4yrrlsfdr7hzpua0oymim6.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"s4yrrlsfdr7hzpua0oymim6","title":"2023-02-15","desc":"","updated":1676991733227,"created":1676449521597,"traitIds":["open-notebook-ebruelhart"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2023.02.15","type":"note","vault":{"fsPath":"vault"},"contentHash":"0b87edbfcb53f8b6165d2a288d94ac90","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"complete-setup-of-the-ubuntu-server-step-by-step":{"type":"header","text":"Complete setup of the ubuntu server step-by-step","value":"complete-setup-of-the-ubuntu-server-step-by-step","line":15,"column":0,"depth":1},"now-install-and-configure-postgis":{"type":"header","text":"Now install and configure postgis","value":"now-install-and-configure-postgis","line":22,"column":0,"depth":2},"install-pgadmin4-graphical-interface-for-postgis":{"type":"header","text":"Install pgAdmin4 (graphical interface for postgis)","value":"install-pgadmin4-graphical-interface-for-postgis","line":30,"column":0,"depth":2}},"children":[],"parent":"1txptky63b0ed756t77pgub","data":{}},"body":"
2023-02-15
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2023.02.15
\n
Complete setup of the ubuntu server step-by-step
\n
1) Download Ubuntu desktop (in this situation Ubuntu 22.04 LTS Jammy jelly) iso\n2) Flash the iso with balena etcher on a USB key. Then plug the USB on the machine where we want to install Ubuntu. Access the bios and boot from the USB key.\n3) Configure the ubuntu desktop: choose the keyboard layout you want (in this case switzerland -> switzerland-French, no dead keays), skip the wireless step, choose minimal installation and check \"install third-party software for graphics and Wi-Fi hardware and additional media formats\". Then choose Erase disk and install ubuntu. Then choose a region (here Zurich) and a username and password. Ubuntu will install and reboot. When is asks, unplug the USB key and press enter. ubuntu is now installed.\n4) Now connect to internet (wireless or wired).\n5) Take your ubuntu up-to-date by executing in the command line: sudo apt-get update, sudo apt-get upgrade, sudo reboot. The machine will restart and apply all updates.
\n
Now install and configure postgis
\n
1) Install postgis with: sudo apt-get install postgresql postgis\n2) Create a new postgresql database: sudo -u postgres createdb gis_dbgi. This creates a postgis database names gis_dbgi.\n3) Enable PosGis extension for the database: sudo -u postgres psql -d gis_dbgi -c \"CREATE EXTENSION postgis;\"\n4) Set up access and permissions for the database: sudo -u postgres psql -d gis_dbgi -c \"CREATE USER usr_gis_dbgi WITH PASSWORD '861510Eb.98';\" then sudo -u postgres psql -d gis_dbgi -c \"GRANT ALL PRIVILEGES ON DATABASE gis_dbgi TO usr_gis_dbgi;\" and sudo -u postgres psql -d gis_dbgi -c \"GRANT ALL ON SCHEMA public TO usr_gis_dbgi;\"\n5) change the file pg_hba.conf (/etc/postgresql/14/main/pg_hba.conf) by adding the line \"host all all 0.0.0.0/0 md5\"\n6) Restart Postgres: sudo service postgresql restart
\n
Install pgAdmin4 (graphical interface for postgis)
\n
1) Intall curl: sudo apt install curl\n2) Add the GPG Key of pgAdmin: sudo curl https://www.pgadmin.org/static/packages_pgadmin_org.pub | sudo apt-key add\n3) Add the pgAdmin repo: sudo sh -c 'echo \"deb https://ftp.postgresql.org/pub/pgadmin/pgadmin4/apt/$(lsb_release -cs) pgadmin4 main\" > /etc/apt/sources.list.d/pgadmin4.list && sudo apt update'\n4) Install pgAdmin: sudo apt install pgadmin4 -y\n5) Configure pgAdmin web interface: sudo /usr/pgadmin4/bin/setup-web.sh After this commande, you have to add an email and a password.\n6) Localhost adress to access the web interface: http://127.0.0.1/pgadmin4 here you have to enter the mail and the password set before.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/s6ozn8k96p7yh3er2vf9q6l.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/s6ozn8k96p7yh3er2vf9q6l.json
new file mode 100644
index 000000000000..7ac5733b5bb2
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/s6ozn8k96p7yh3er2vf9q6l.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.pmallard.2022.12","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345607,"created":1695629345607,"id":"s6ozn8k96p7yh3er2vf9q6l","desc":"","links":[],"anchors":{},"children":["pavm24gkbkhlul1izg1yjtk","pjuvmnjrhj2hn3d796m0hrs","6cwzu4c8qiv4kzr83kvfldw","wjbg6tl4gd7nqyegd8gmsrw"],"parent":"m7rxlmot2oqmboiz9eomlja","data":{},"title":"12"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/s8gqac3x75f7wklnzu3phot.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/s8gqac3x75f7wklnzu3phot.json
new file mode 100644
index 000000000000..08a936c956b0
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/s8gqac3x75f7wklnzu3phot.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"s8gqac3x75f7wklnzu3phot","title":"2022-11-10","desc":"","updated":1668170334908,"created":1668067283498,"traitIds":["open-notebook-mw"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2022.11.10","type":"note","vault":{"fsPath":"vault"},"contentHash":"5cf326dee28931c6a21014883a42246f","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"dbgi-meeting":{"type":"header","text":"DBGI MEETING","value":"dbgi-meeting","line":16,"column":0,"depth":3},"to-show":{"type":"header","text":"To show:","value":"to-show","line":17,"column":0,"depth":4},"to-do-next":{"type":"header","text":"To do next:","value":"to-do-next","line":34,"column":0,"depth":4}},"children":[],"parent":"2n9ssq0hbel5s1n7o4aiqhl","data":{}},"body":"
2022-11-10
\n
This is Maëlle's DBGI daily open-notebook.
\n
Today is 2022.11.10
\n
DBGI MEETING
\n
To show:
\n
\n
Directus\n
* db Tables\n* Interface\n
\n
\n
Scripts\n
* Inat_fetcher\n* update_db\n * Problem => swiped_loc\n* module\n* cronjob\n* env\n
\n
\n
Dendron\n
* Wiki\n
\n
\n
\n
To do next:
\n
\n
Samples table: \n
* change dbgi_id => DBGI_000000\n
\n
\n
Pyinat:\n
* Block table on directus ⚠️should not be changed!\n* Swiped_loc problem\n* Show images from url\n* Dbgi_id without regex\n
\n
\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/s93kczxf6qwb83p4bfo7co2.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/s93kczxf6qwb83p4bfo7co2.json
new file mode 100644
index 000000000000..f11c3aed1421
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/s93kczxf6qwb83p4bfo7co2.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"s93kczxf6qwb83p4bfo7co2","title":"2023-04-25","desc":"","updated":1682406698092,"created":1682406662284,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.04.25","type":"note","vault":{"fsPath":"vault"},"contentHash":"01ebce3f6ed0fbe597c4e25ecbe9e4ab","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":27,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":31,"column":0,"depth":2}},"children":[],"parent":"n0racr7o73zkdsyfvpomj9y","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/sbh3tzjkfz4sqw3onjm7pl3.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/sbh3tzjkfz4sqw3onjm7pl3.json
new file mode 100644
index 000000000000..b8757ff4f2c8
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/sbh3tzjkfz4sqw3onjm7pl3.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"sbh3tzjkfz4sqw3onjm7pl3","title":"20","desc":"","updated":1674143737977,"created":1674143695139,"custom":{},"fname":"open-notebook.dbgi.mwannier.2022.10.20","type":"note","vault":{"fsPath":"vault"},"contentHash":"683caa9dd57c25341b09bb754c07c518","links":[],"anchors":{"versioning-for-the-database":{"type":"header","text":"Versioning for the database","value":"versioning-for-the-database","line":9,"column":0,"depth":1},"options":{"type":"header","text":"Options:","value":"options","line":11,"column":0,"depth":2},"selected":{"type":"header","text":"Selected:","value":"selected","line":16,"column":0,"depth":2}},"children":[],"parent":"no97uw00f313ac26c6d5hfl","data":{}},"body":"
=> no need to install something else\n=> backup saved everyday at 5am in /DATA/commons/dbgi/backup_directus_dbgi.sql
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/scrvlmljfpp35qlu37jheid.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/scrvlmljfpp35qlu37jheid.json
new file mode 100644
index 000000000000..ebe3f5b9eeef
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/scrvlmljfpp35qlu37jheid.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"scrvlmljfpp35qlu37jheid","title":"2023-04-05","desc":"","updated":1680708194340,"created":1680687206290,"traitIds":["open-notebook-lschwegler"],"custom":{},"fname":"open-notebook.dbgi.lschwegler.2023.04.05","type":"note","vault":{"fsPath":"vault"},"contentHash":"040c686f111f3957174d15bcba7738c8","links":[],"anchors":{"this-is-lenditas-dbgi-daily-open-notebook":{"type":"header","text":"This is Lendita's DBGI daily open-notebook.","value":"this-is-lenditas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":23,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":25,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":27,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":34,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":36,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":37,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":38,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":41,"column":0,"depth":2}},"children":[],"parent":"k1podevswt9ww6fu8pm77tt","data":{}},"body":"
Today I looked at the samples that were in the freeze dryer last week and weighed them. It should be about 47.5 mg to 52.5 mg. The plant samples then go into a small tube, with 3 beads and of course labelled with the dbgi number.\nEdouard and I have tried to use an old Android phone to get around the excessively large pictures on the iPhone, but unfortunately without success. I will continue to take the pictures with my iPhone and then compress them.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/scwf8yap0lpao69iti1h1l7.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/scwf8yap0lpao69iti1h1l7.json
new file mode 100644
index 000000000000..f9585fd7fc88
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/scwf8yap0lpao69iti1h1l7.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"scwf8yap0lpao69iti1h1l7","title":"Program","desc":"","updated":1679639385957,"created":1679639088606,"custom":{},"fname":"workshops.2023.03.28.program","type":"note","vault":{"fsPath":"vault"},"contentHash":"077cb66976a60387433d42740da1cfa5","links":[],"anchors":{"wikibase":{"type":"header","text":"Wikibase","value":"wikibase","line":9,"column":0,"depth":1},"others":{"type":"header","text":"Others","value":"others","line":20,"column":0,"depth":1}},"children":["xa6skrpvssydifmgselxzgr"],"parent":"l1igcmwkz1opj486gatuniu","data":{}},"body":"
Program
\n
Wikibase
\n
This is the main topic of the workshop.
\n
We will start at 11:00 in room PER21 E040 (Bd de Pérolles 90, rez-de-chaussée) in Fribourg.\nWe will stream the discussions at https://meet.jit.si/DBGI_talks and maybe through Teams if issues.
We will also take advantage to have Daniel around to discuss other topics.\nHere are some :
\n
\n
Hi Pierre,
\n
good to have that Wikibase instance - I just requested an account.\nEveryone participating in the workshop would ideally have an account\non it beforehand.\nHaving a Wikimedia account would be useful too (especially to test\nsome tooling) but is not essential.
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/se2pzun6petcy32hf5j3wuw.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/se2pzun6petcy32hf5j3wuw.json
new file mode 100644
index 000000000000..8135b8d60707
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/se2pzun6petcy32hf5j3wuw.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"se2pzun6petcy32hf5j3wuw","title":"BiCICKL-project","desc":"","updated":1677770298700,"created":1677768038128,"custom":{},"fname":"BiCICKL-project","type":"note","vault":{"fsPath":"vault"},"contentHash":"3fee60e04a015cc1298e7e6305ac3b14","links":[{"type":"wiki","from":{"fname":"BiCICKL-project","id":"se2pzun6petcy32hf5j3wuw","vaultName":"vault"},"value":"BiCICKL-project.first-meeting","position":{"start":{"line":35,"column":22,"offset":3087},"end":{"line":35,"column":55,"offset":3120},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"BiCICKL-project.first-meeting"}}],"anchors":{"proposal":{"type":"header","text":"Proposal","value":"proposal","line":28,"column":0,"depth":2},"first-meeting":{"type":"header","text":"First meeting","value":"first-meeting","line":35,"column":0,"depth":2},"communications":{"type":"header","text":"Communications","value":"communications","line":44,"column":0,"depth":2}},"children":["goothtp7r9v98y6xr905q60","jhi5wst259ii3b5oq2d3r0l","szip2108fws5j6304d0ts1z"],"parent":"txkHnVTI9AawnquiublXO","data":{}},"body":"
This proposal was entitled \"Exploiting and sharing existing and new knowledge in the frame of the Digital Botanical Gardens Initiative.\"
\n
It aims to explore several aspects related to knowledge exploitation and sharing of small molecules and their occurrences.
\n
The abstract was :
\n
\n
We are currently launching the Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) with the ambition to explore innovative solutions for the acquisition, management and sharing of digital information acquired on living botanical collections. A particular focus is placed on the large-scale characterization of the chemodiversity of living plant collections through mass spectrometry. The acquired data will be structured, organized and connected with relevant metadata through semantic web technology. After validation and application in wild ecosystems, the gathered knowledge will inform ecosystem functioning research and orient biodiversity conservation projects.\nOne central aspect of the DBGI thus resides in the acquisition of high quality information on the digitised chemodiversity which in turns rely essentially in efficient metabolite annotation. For this we employ a taxonomically informed metabolite annotation process (https://doi.org/10.3389/fpls.2019.01329), which we have shown to systematically improve the performance of state-of-the computational metabolite annotation solutions. A requirement for this process is to access comprehensive ressources documenting the biological occurrence of small molecules. For this we recently opened the LOTUS ressource (https://elifesciences.org/articles/70780) to the community. However, numerous biological occurrences of natural products are still lacking.
\n
We would like to evaluate the BiCICKL Research Infrastructures to:
\n
\n
\n
Improve past knowledge exploitation: extract pairs of chemical compound and taxon from literature not present in LOTUS and relevant to the DBGI (papers describing phytochemical investigation of plants of the Swiss Botanical Gardens, e.g. https://doi.org/10.1016/j.phytochem.2020.112469)
\n
\n
\n
Enhance future knowledge dissemination: explore publication solutions to efficiently disseminate knowledge acquired from metabolomics, that is, putative occurrences of chemical structures in biological matrices (simple RDF triples, Nanopublications (https://nanopub.org/) or similar).
On the 20th February we received the good news that our proposal was accepted ! Which means we will get support (in the form of time, expertise and implementations from the BiCICKL team, no money) to advance this project.
\n
First meeting
\n
Today (Thursday 02 March 2023) we had a first meeting to launch this small project and discuss initial ideas.
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/se52zr89ov9hlvdol71v5w6.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/se52zr89ov9hlvdol71v5w6.json
new file mode 100644
index 000000000000..c114664f8d29
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/se52zr89ov9hlvdol71v5w6.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"se52zr89ov9hlvdol71v5w6","title":"2023-09-22","desc":"","updated":1695388685979,"created":1695383550863,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.09.22","type":"note","vault":{"fsPath":"vault"},"contentHash":"94254f80c449e1338ae7f79611f548ad","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2023.09.22","id":"se52zr89ov9hlvdol71v5w6","vaultName":"vault"},"value":"emi-rdb-tables","position":{"start":{"line":65,"column":16,"offset":1039},"end":{"line":65,"column":34,"offset":1057},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"emi-rdb-tables"}}],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"meeting-edouard":{"type":"header","text":"Meeting Edouard","value":"meeting-edouard","line":24,"column":0,"depth":3},"schema-of-an-emi-overall-procedure":{"type":"header","text":"Schema of an EMI overall procedure","value":"schema-of-an-emi-overall-procedure","line":94,"column":0,"depth":3},"paused":{"type":"header","text":"Paused","value":"paused","line":165,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":167,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":169,"column":0,"depth":2},"todo-tomorrow-one-day--or-never":{"type":"header","text":"Todo tomorrow, one day ... or never","value":"todo-tomorrow-one-day--or-never","line":171,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":173,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":174,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":175,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":178,"column":0,"depth":2}},"children":[],"parent":"3gtlbi2k7w3yr100owwky6q","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/sef56d6u8k6dnm61naamfmz.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/sef56d6u8k6dnm61naamfmz.json
new file mode 100644
index 000000000000..a2b8ddea70df
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/sef56d6u8k6dnm61naamfmz.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.lcappelletti.2023.07","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345583,"created":1695629345583,"id":"sef56d6u8k6dnm61naamfmz","desc":"","links":[],"anchors":{},"children":["twrgu2q3yot15pz1v2en7f6","bwu3bavs2hymd3x55ikezub","4gh9ubiyqx2c29rph7lyax3","m3w3375qg6wrmwniyt215x6"],"parent":"8w3q1chl20rs3sjp6x97v18","data":{},"title":"07"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/sfencnlxrgzr2ffrf1gy32w.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/sfencnlxrgzr2ffrf1gy32w.json
new file mode 100644
index 000000000000..2c81ed3c4ae8
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/sfencnlxrgzr2ffrf1gy32w.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"sfencnlxrgzr2ffrf1gy32w","title":"Botanical Garden","desc":"","updated":1677088695039,"created":1676137482978,"custom":{},"fname":"meetings.2023.02.22.program.notes.botanical-garden","type":"note","vault":{"fsPath":"vault"},"contentHash":"f606e0f5a28cc5d22386f97d29810da1","links":[{"from":{"fname":"meetings.2023.02.22.program","id":"33r62tekbrtckkfadan4kwj","vaultName":"vault"},"type":"backlink","position":{"start":{"line":75,"column":1,"offset":2352},"end":{"line":75,"column":56,"offset":2407},"indent":[]},"value":"meetings.2023.02.22.program.notes.botanical-garden"},{"from":{"fname":"open-notebook.dbgi.pmallard.2023.02.23","id":"duroxonpr6sjqcls3wceqcg","vaultName":"vault"},"type":"backlink","position":{"start":{"line":64,"column":90,"offset":1279},"end":{"line":64,"column":144,"offset":1333},"indent":[]},"value":"meetings.2023.02.22.program.notes.botanical-garden"}],"anchors":{"botanical-gardens-collection-of-specimens--legal-aspects":{"type":"header","text":"Botanical Gardens, collection of specimens & legal aspects","value":"botanical-gardens-collection-of-specimens--legal-aspects","line":8,"column":0,"depth":1},"botanical-gardens":{"type":"header","text":"Botanical Gardens","value":"botanical-gardens","line":10,"column":0,"depth":2},"what-do-we-have-":{"type":"header","text":"What do we have ?","value":"what-do-we-have-","line":15,"column":0,"depth":3},"what-do-we-want-":{"type":"header","text":"What do we want ?","value":"what-do-we-want-","line":19,"column":0,"depth":3},"litterature-information-collection":{"type":"header","text":"Litterature information collection","value":"litterature-information-collection","line":38,"column":0,"depth":2},"can-we-uniquely-identify-a-specimen-":{"type":"header","text":"Can we uniquely identify a specimen ?","value":"can-we-uniquely-identify-a-specimen-","line":66,"column":0,"depth":1},"working-group-on-legal-and-ethics-aspects-of-acces-to-genetic--metabolic-diversity":{"type":"header","text":"Working group on legal and ethics aspects of acces to genetic / metabolic diversity","value":"working-group-on-legal-and-ethics-aspects-of-acces-to-genetic--metabolic-diversity","line":79,"column":0,"depth":3}},"children":[],"parent":"9676i362aou4xnjhjczonjx","data":{}},"body":"
Botanical Garden
\n
Botanical Gardens, collection of specimens & legal aspects
\n
Botanical Gardens
\n
\n
Anne-Laure, Donat, Nadir, Blaise, Gregor
\n
\n
What do we have ?
\n
For now UniFr / UniNe
\n
What do we want ?
\n
Should we contact other Botanical gardens in CH ? International ?
\n
Maybe yes at least for questions regarding Nagoya and CBD. (e.g Geneva BG, Vienna Botanical Gardens, IPEN exchange group) BGCI (BG conservation iNternational)\nHBH (Hortus Botanicus Helveticus )
\n
Meeting in Neuchâtel in August 30-31 Manu will present DBGI
\n
Private Partner Orchids Green House (EMI/DBGI ?)\nLegal & ethics ?\nNagoya status.
\n
We want to track provenance and licences regarding reuse of data.
\n
Litterature information collection
\n
This part should eventually be linked with the anticipated LOTUS project.\nHowever discussing it we could think about the best way to integrate Taxonomic treatments in the DBGI-KG from the very beginning of the project and not afterwards
\n
From Donat's part
\n
\n
Thanks for the invitation. I had a look at the program and wonder whether you want to have a few slides about the linking of metabolomes to specimens to literature, essentially what you asked for in the BiCIKL TNA proposal.\nOn our side we are interested to process Phytochemistry so you could then create the links and we could work with Patrick Ruch to see how we could annotate chemical substances in SIBiLS once we have the Phytochemistry articles in SIBiLS
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/spny4h5dev07610tk12j6mn.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/spny4h5dev07610tk12j6mn.json
new file mode 100644
index 000000000000..a58364810ef4
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/spny4h5dev07610tk12j6mn.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"spny4h5dev07610tk12j6mn","title":"Cheng_2018","desc":"","updated":1656059639673,"created":1656059639673,"isDir":false,"custom":{"isDir":false},"fname":"biblio.cheng_2018","type":"note","vault":{"fsPath":"vault"},"contentHash":"6158543d1c6455b7ace6d0ea339cdd13","links":[{"type":"wiki","from":{"fname":"biblio.cheng_2018","id":"spny4h5dev07610tk12j6mn","vaultName":"vault"},"value":"article","position":{"start":{"line":5,"column":14,"offset":73},"end":{"line":5,"column":25,"offset":84},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"article"}},{"type":"wiki","from":{"fname":"biblio.cheng_2018","id":"spny4h5dev07610tk12j6mn","vaultName":"vault"},"value":"shifeng-cheng","position":{"start":{"line":6,"column":12,"offset":96},"end":{"line":6,"column":29,"offset":113},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"shifeng-cheng"}},{"type":"wiki","from":{"fname":"biblio.cheng_2018","id":"spny4h5dev07610tk12j6mn","vaultName":"vault"},"value":"michael-melkonian","position":{"start":{"line":6,"column":31,"offset":115},"end":{"line":6,"column":52,"offset":136},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"michael-melkonian"}},{"type":"wiki","from":{"fname":"biblio.cheng_2018","id":"spny4h5dev07610tk12j6mn","vaultName":"vault"},"value":"stephen-a-smith","position":{"start":{"line":6,"column":54,"offset":138},"end":{"line":6,"column":73,"offset":157},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"stephen-a-smith"}},{"type":"wiki","from":{"fname":"biblio.cheng_2018","id":"spny4h5dev07610tk12j6mn","vaultName":"vault"},"value":"samuel-brockington","position":{"start":{"line":6,"column":75,"offset":159},"end":{"line":6,"column":97,"offset":181},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"samuel-brockington"}},{"type":"wiki","from":{"fname":"biblio.cheng_2018","id":"spny4h5dev07610tk12j6mn","vaultName":"vault"},"value":"john-m-archibald","position":{"start":{"line":6,"column":99,"offset":183},"end":{"line":6,"column":119,"offset":203},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"john-m-archibald"}},{"type":"wiki","from":{"fname":"biblio.cheng_2018","id":"spny4h5dev07610tk12j6mn","vaultName":"vault"},"value":"pierre-marc-delaux","position":{"start":{"line":6,"column":121,"offset":205},"end":{"line":6,"column":143,"offset":227},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"pierre-marc-delaux"}},{"type":"wiki","from":{"fname":"biblio.cheng_2018","id":"spny4h5dev07610tk12j6mn","vaultName":"vault"},"value":"fay-wei-li","position":{"start":{"line":6,"column":145,"offset":229},"end":{"line":6,"column":159,"offset":243},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"fay-wei-li"}},{"type":"wiki","from":{"fname":"biblio.cheng_2018","id":"spny4h5dev07610tk12j6mn","vaultName":"vault"},"value":"barbara-melkonian","position":{"start":{"line":6,"column":161,"offset":245},"end":{"line":6,"column":182,"offset":266},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"barbara-melkonian"}},{"type":"wiki","from":{"fname":"biblio.cheng_2018","id":"spny4h5dev07610tk12j6mn","vaultName":"vault"},"value":"evgeny-v-mavrodiev","position":{"start":{"line":6,"column":184,"offset":268},"end":{"line":6,"column":206,"offset":290},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"evgeny-v-mavrodiev"}},{"type":"wiki","from":{"fname":"biblio.cheng_2018","id":"spny4h5dev07610tk12j6mn","vaultName":"vault"},"value":"wenjing-sun","position":{"start":{"line":6,"column":208,"offset":292},"end":{"line":6,"column":223,"offset":307},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"wenjing-sun"}},{"type":"wiki","from":{"fname":"biblio.cheng_2018","id":"spny4h5dev07610tk12j6mn","vaultName":"vault"},"value":"yuan-fu","position":{"start":{"line":6,"column":225,"offset":309},"end":{"line":6,"column":236,"offset":320},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"yuan-fu"}},{"type":"wiki","from":{"fname":"biblio.cheng_2018","id":"spny4h5dev07610tk12j6mn","vaultName":"vault"},"value":"huanming-yang","position":{"start":{"line":6,"column":238,"offset":322},"end":{"line":6,"column":255,"offset":339},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"huanming-yang"}},{"type":"wiki","from":{"fname":"biblio.cheng_2018","id":"spny4h5dev07610tk12j6mn","vaultName":"vault"},"value":"douglas-e-soltis","position":{"start":{"line":6,"column":257,"offset":341},"end":{"line":6,"column":277,"offset":361},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"douglas-e-soltis"}},{"type":"wiki","from":{"fname":"biblio.cheng_2018","id":"spny4h5dev07610tk12j6mn","vaultName":"vault"},"value":"sean-w-graham","position":{"start":{"line":6,"column":279,"offset":363},"end":{"line":6,"column":296,"offset":380},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"sean-w-graham"}},{"type":"wiki","from":{"fname":"biblio.cheng_2018","id":"spny4h5dev07610tk12j6mn","vaultName":"vault"},"value":"pamela-s-soltis","position":{"start":{"line":6,"column":298,"offset":382},"end":{"line":6,"column":317,"offset":401},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"pamela-s-soltis"}},{"type":"wiki","from":{"fname":"biblio.cheng_2018","id":"spny4h5dev07610tk12j6mn","vaultName":"vault"},"value":"xin-liu","position":{"start":{"line":6,"column":319,"offset":403},"end":{"line":6,"column":330,"offset":414},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"xin-liu"}},{"type":"wiki","from":{"fname":"biblio.cheng_2018","id":"spny4h5dev07610tk12j6mn","vaultName":"vault"},"value":"xun-xu","position":{"start":{"line":6,"column":332,"offset":416},"end":{"line":6,"column":342,"offset":426},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"xun-xu"}},{"type":"wiki","from":{"fname":"biblio.cheng_2018","id":"spny4h5dev07610tk12j6mn","vaultName":"vault"},"value":"gane-ka-shu-wong","position":{"start":{"line":6,"column":344,"offset":428},"end":{"line":6,"column":364,"offset":448},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"gane-ka-shu-wong"}},{"type":"wiki","from":{"fname":"biblio.cheng_2018","id":"spny4h5dev07610tk12j6mn","vaultName":"vault"},"value":"2018-03-01","position":{"start":{"line":7,"column":9,"offset":457},"end":{"line":7,"column":23,"offset":471},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2018-03-01"}},{"type":"wiki","from":{"fname":"biblio.cheng_2018","id":"spny4h5dev07610tk12j6mn","vaultName":"vault"},"value":"2022-03-29","position":{"start":{"line":8,"column":15,"offset":486},"end":{"line":8,"column":29,"offset":500},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-03-29"}},{"type":"wiki","from":{"fname":"biblio.cheng_2018","id":"spny4h5dev07610tk12j6mn","vaultName":"vault"},"value":"digital-botanical-garden","position":{"start":{"line":12,"column":11,"offset":792},"end":{"line":12,"column":39,"offset":820},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"digital-botanical-garden"}},{"type":"wiki","from":{"fname":"biblio.cheng_2018","id":"spny4h5dev07610tk12j6mn","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":13,"column":3,"offset":823},"end":{"line":13,"column":10,"offset":830},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio.cheng_2018","id":"spny4h5dev07610tk12j6mn","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":13,"column":12,"offset":832},"end":{"line":13,"column":29,"offset":849},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio.cheng_2018","id":"spny4h5dev07610tk12j6mn","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":13,"column":31,"offset":851},"end":{"line":13,"column":41,"offset":861},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}}],"anchors":{"10kp-a-phylodiverse-genome-sequencing-plan":{"type":"header","text":"10KP: A phylodiverse genome sequencing plan","value":"10kp-a-phylodiverse-genome-sequencing-plan","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":25,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/ssi87anaiik1o7joqf7mvdp.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/ssi87anaiik1o7joqf7mvdp.json
new file mode 100644
index 000000000000..635f3fe2cddf
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/ssi87anaiik1o7joqf7mvdp.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"ssi87anaiik1o7joqf7mvdp","title":"iNaturalist","desc":"","updated":1656057895008,"created":1652954469821,"custom":{},"fname":"Bachelor-Work-2022.methodology.inaturalist","type":"note","vault":{"fsPath":"vault"},"contentHash":"edd6481a1fb6e87fc40c18b624a29fb8","links":[{"type":"wiki","from":{"fname":"Bachelor-Work-2022.methodology.inaturalist","id":"ssi87anaiik1o7joqf7mvdp","vaultName":"vault"},"value":"biblio._f","position":{"start":{"line":1,"column":127,"offset":126},"end":{"line":1,"column":140,"offset":139},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"biblio._f"}},{"from":{"fname":"inaturalist","id":"yhy9x9k5bc082v5f87abgnv","vaultName":"vault"},"type":"backlink","position":{"start":{"line":4,"column":5,"offset":106},"end":{"line":4,"column":54,"offset":155},"indent":[]},"value":"Bachelor-Work-2022.methodology.inaturalist"}],"anchors":{"inaturalist-advantages-and-utility":{"type":"header","text":"iNaturalist advantages and utility","value":"inaturalist-advantages-and-utility","line":9,"column":0,"depth":2},"inaturalist-import":{"type":"header","text":"iNaturalist import","value":"inaturalist-import","line":17,"column":0,"depth":2}},"children":[],"parent":"mpboa8wpvhpygf5fw4o9v11","data":{}},"body":"
iNaturalist
\n
\n
\"iNaturalist is an online social network of people sharing biodiversity information to help each other learn about nature\" (_f)
\n
\n
iNaturalist advantages and utility
\n
iNaturalist allows to link our samples with pictures, DBGI sample code and location. We can precise the plant phenology too. It contains a community curation system linked with a machine learning technology to correct or add an identification of each sampled plants.
\n
We can create projects with a delimited area where each added plant will automatically fit in when uploaded. This is what we have done with the Jardin Botanique de l'Université de Fribourg. With this, all our samples are grouped together. This allows then to export the data in batch with the pyinaturalist client for the iNaturalist API, to obtain all these informations on a CSV file.
\n
iNaturalist page of Physalis peruviana with all the usefull fields described
\n
iNaturalist import
\n
For now, we haven't found a satisfying automatized manner to import pictures and locations from the drone map. We have to export the locations and DBGI sample codes from QGIS and add them manually to each plant profile :
\n
1) Create an iNaturalist account or connect you on the iNaturalist page on a computer.
\n
2) Put the pictures taken on the field in the DBGI account google photo.
\n
3) Download them on the computer.
\n
4) Click on the uploader button at the top of your profile page after connection and choose files to select the pictures to upload.
\n
5) Group the pictures of the same plant by selecting them all using ctrl + click and clicking on the combine button at the top.
\n
6) Click the Select all and select captive/cultivated if all the plants are cultivated and add the \"Digital Botanical Gardens Initiative\" on the projects field. Deselct all.
\n
7) Add the species name for each plant on the \"species name\" field.
\n
8) Add the location for each plant using the QGIS exported CSV in the Location field.
\n
9) Add the dbgi_id in the Fields field for each plant.
\n
10) Submit the observations.
\n
However, it seems to be possible to directly link the pictures taken on the field with the plant name and the location to make automated batch imports using QField. Work in progress...
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/su09w077q9nm0l33h07o0pp.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/su09w077q9nm0l33h07o0pp.json
new file mode 100644
index 000000000000..21c717c66fb3
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/su09w077q9nm0l33h07o0pp.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"su09w077q9nm0l33h07o0pp","title":"2023-03-01","desc":"","updated":1677677912130,"created":1677675588167,"traitIds":["open-notebook-lschwegler"],"custom":{},"fname":"open-notebook.dbgi.lschwegler.2023.03.01","type":"note","vault":{"fsPath":"vault"},"contentHash":"8e3ecc9076461f88a709d509526ede6d","links":[],"anchors":{"this-is-lenditas-dbgi-daily-open-notebook":{"type":"header","text":"This is Lendita's DBGI daily open-notebook.","value":"this-is-lenditas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":23,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":25,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":27,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":37,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":39,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":40,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":41,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":44,"column":0,"depth":2}},"children":[],"parent":"fvmwxnhp9vq9cdbnjkn6slr","data":{}},"body":"
Today Edouard, Stephanie and I picked up the samples from the freezer that we had frozen on 23.02.2023 until the dry freezer is free. There was a small problem because the adhesive labels with the QR-Code had come off. Luckily it wasn't too bad as they were still attached to the tubes and we fixed them with glue.\nWe filled the samples in the box with liquid nitrogen and then put them in the dry freezer. Which are now in there for 48 hours.
\n
It is very important to book/reserve the dry freezer because there is only one and it is well used. If it is not immediately available, which is usually the case, you have to freeze the samples as we did last week. until the dry freezer becomes available.
\n
I already had a login at iNaturalist and so we \"only\" had to import, sort and label the pictures from last week. The grouped pictures: label them in the field with emi_external_id: and insert the corresponding number, e.g. dbgi_000922. Add the name of the plant, e.g. Pachyphytum oviferum J.A. Purpus. Then mark the location with latitude: 46.7930712769837 and longitude: 7.15577631011612 and submit all finished images to iNaturalist.
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/suu6tvd8mg243bnkeiam1ac.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/suu6tvd8mg243bnkeiam1ac.json
new file mode 100644
index 000000000000..6d74d3f87115
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/suu6tvd8mg243bnkeiam1ac.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.commons.pmallard.2023","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345557,"created":1695629345557,"id":"suu6tvd8mg243bnkeiam1ac","desc":"","links":[],"anchors":{},"children":["u7s9s8a1tay4or5xhz14ohn"],"parent":"jivkfmfjowhi82dgigqp7vy","data":{},"title":"2023"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/sx5cay1jpxz77zh0jpx24nx.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/sx5cay1jpxz77zh0jpx24nx.json
new file mode 100644
index 000000000000..acbd848b506b
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/sx5cay1jpxz77zh0jpx24nx.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"sx5cay1jpxz77zh0jpx24nx","title":"16","desc":"","updated":1692179304007,"created":1692174657523,"custom":{},"fname":"open-notebook.dbgi.lcappelletti.2023.08.16","type":"note","vault":{"fsPath":"vault"},"contentHash":"ade168d407422e56dc52e7d2baaa33bc","links":[],"anchors":{"this-is-luca-cappellettis-dbgi-daily-open-notebook":{"type":"header","text":"This is Luca Cappelletti's DBGI daily open-notebook.","value":"this-is-luca-cappellettis-dbgi-daily-open-notebook","line":9,"column":0,"depth":1},"doing":{"type":"header","text":"Doing","value":"doing","line":13,"column":0,"depth":2},"output-of-the-fourth-module":{"type":"header","text":"Output of the fourth module","value":"output-of-the-fourth-module","line":16,"column":0,"depth":3},"compound-identification":{"type":"header","text":"Compound identification","value":"compound-identification","line":18,"column":0,"depth":4},"zip-files":{"type":"header","text":"Zip files","value":"zip-files","line":25,"column":0,"depth":4},"canopus-compound-summary":{"type":"header","text":"Canopus compound summary","value":"canopus-compound-summary","line":28,"column":0,"depth":4},"working-on-fifth-module-meta-analysis":{"type":"header","text":"Working on Fifth module, meta analysis","value":"working-on-fifth-module-meta-analysis","line":33,"column":0,"depth":3},"note-on-possibility-of-siamese-network-or-similarity-tree":{"type":"header","text":"Note on possibility of siamese network or similarity tree","value":"note-on-possibility-of-siamese-network-or-similarity-tree","line":37,"column":0,"depth":3}},"children":[],"parent":"p2qm1kmy4dcnmxjh0agsjms","data":{}},"body":"
16
\n
This is Luca Cappelletti's DBGI daily open-notebook.
\n
Today is 2023.08.16
\n
Doing
\n
Working on fourth module of DBGI pipeline.
\n
Output of the fourth module
\n
Compound identification
\n
A TSV document called compound_identification.tsv.
\n
The column called molecular formula contains the best hit for the molecular structure of the particular sample obtained from Sirius. The Sirius system uses a large database from PubChem, so we could find contaminants compounds such as pesticides.
\n
NOTE: we can lookup the information about the molecule using the inchkey on PubChem, and by using the available infodump we can mine several additional information about the molecule. Analogously, we can ingest CHEBI for the same goals.
\n
Zip files
\n
The several ZIP files produces by the fourth module are produced by Sirius, they are annotations for each of the samples and feature within each sample. These ZIP documents can generally be ignored for the purpose of the DBGI pipeline.
\n
Canopus compound summary
\n
A TSV document called canopus_compound_summary.tsv.
\n
Canopus is less rigid, and can identify compounds that are not present in the PubChem database. The columns referring to canopus are called NPC#pathway, NPC#pathwat probability, NPC@#superclass, NPC#superclass probability, NPC#class and NPC#class probability.
\n
Working on Fifth module, meta analysis
\n
The fifth module of the pipeline retrieves the WikiData IDs associated
\n
Note on possibility of siamese network or similarity tree
\n
We can reasonably create a siamese network to compute an embedding that captures all the cosine similarities of the specters computed in the MGFs. Also, we can reasonably directly build a similarity tree.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/sz9fbyyte5ptelk0xnshw0l.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/sz9fbyyte5ptelk0xnshw0l.json
new file mode 100644
index 000000000000..22cfa2dd5bdd
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/sz9fbyyte5ptelk0xnshw0l.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"sz9fbyyte5ptelk0xnshw0l","title":"2023-04-03","desc":"","updated":1680535699560,"created":1680534521046,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.04.03","type":"note","vault":{"fsPath":"vault"},"contentHash":"95438efa7e1ddb407bd4372c27ff7ea0","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":25,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":29,"column":0,"depth":2}},"children":[],"parent":"n0racr7o73zkdsyfvpomj9y","data":{}},"body":"
Treemaps are a good alternative to sunburst graphs when dealing with large datasets, as they can display hierarchical data more efficiently, especially when there are many items at each level of the hierarchy.
\n
Optimize the treemap rendering:
\n
a. If your dataset is very large, you can consider aggregating the data before rendering the treemap. This would reduce the number of nodes, which would improve rendering performance. You can use the groupby() function from pandas to aggregate the data based on specific levels of hierarchy
\n
Optimize the dataset processing:\n\na. Read only required columns from the CSV file using usecols parameter. You are already doing this, which is good.\n\nb. Instead of filtering the DataFrame twice and filling NaN values, you can filter and fill NaN values in one step using the query() method\n
\n
To render better user experience: dcc.loading
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/szip2108fws5j6304d0ts1z.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/szip2108fws5j6304d0ts1z.json
new file mode 100644
index 000000000000..99861df4059e
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/szip2108fws5j6304d0ts1z.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"szip2108fws5j6304d0ts1z","title":"report","desc":"","updated":1694687709907,"created":1694683867712,"custom":{},"fname":"BiCICKL-project.report","type":"note","vault":{"fsPath":"vault"},"contentHash":"4b31c6380b40d98487e82aeda0eaabd5","links":[],"anchors":{"improve-past-knowledge-exploitation":{"type":"header","text":"Improve past knowledge exploitation","value":"improve-past-knowledge-exploitation","line":9,"column":0,"depth":1},"what-was-done-on-plazis-side":{"type":"header","text":"What was done on Plazi's side","value":"what-was-done-on-plazis-side","line":14,"column":0,"depth":2},"about-plazi":{"type":"header","text":"About Plazi","value":"about-plazi","line":16,"column":0,"depth":2},"done-for-the-bicickl-tna":{"type":"header","text":"Done for the BiCICKL TNA","value":"done-for-the-bicickl-tna","line":20,"column":0,"depth":2},"taxonomic-treatment-example":{"type":"header","text":"Taxonomic Treatment example","value":"taxonomic-treatment-example","line":30,"column":0,"depth":3},"overall-stats-at-plazi":{"type":"header","text":"Overall stats at Plazi","value":"overall-stats-at-plazi","line":37,"column":0,"depth":3},"what-was-done-on-sibilss-side":{"type":"header","text":"What was done on SIBILS's side","value":"what-was-done-on-sibilss-side","line":42,"column":0,"depth":2},"overview":{"type":"header","text":"Overview","value":"overview","line":44,"column":0,"depth":3},"examples":{"type":"header","text":"Examples","value":"examples","line":48,"column":0,"depth":3},"enhance-future-knowledge-dissemination":{"type":"header","text":"Enhance future knowledge dissemination","value":"enhance-future-knowledge-dissemination","line":58,"column":0,"depth":1},"what-was-done-on-knowledgepixels-side":{"type":"header","text":"What was done on KnowledgePixel's side","value":"what-was-done-on-knowledgepixels-side","line":62,"column":0,"depth":2},"ressources":{"type":"header","text":"Ressources","value":"ressources","line":66,"column":0,"depth":1},"class-plazi":{"type":"header","text":"Class Plazi","value":"class-plazi","line":68,"column":0,"depth":3},"google-drive-folder":{"type":"header","text":"Google drive folder","value":"google-drive-folder","line":73,"column":0,"depth":3},"sibils-slides":{"type":"header","text":"SIBILS slides","value":"sibils-slides","line":77,"column":0,"depth":4}},"children":[],"parent":"se2pzun6petcy32hf5j3wuw","data":{}},"body":"
report
\n
Improve past knowledge exploitation
\n
\n
Improve past knowledge exploitation: extract pairs of chemical compound and taxon from literature not present in LOTUS and relevant to the DBGI (papers describing phytochemical investigation of plants of the Swiss Botanical Gardens, e.g. https://doi.org/10.1016/j.phytochem.2020.112469)
Ask Donat and Deborah if they are overlappings papers that would be in BIODIVERSITY PMC ?\nApparently this example is online in MEDLINE and the MEDLINE papers do not seem to benefit from the same treatment within SIBILS. Ask Deborah what are the differences ?
\n
Enhance future knowledge dissemination
\n
\n
Enhance future knowledge dissemination: explore publication solutions to efficiently disseminate knowledge acquired from metabolomics, that is, putative occurrences of chemical structures in biological matrices (simple RDF triples, Nanopublications (https://nanopub.org/) or similar).
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/taqys3xr6utmvhoen4ibr7c.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/taqys3xr6utmvhoen4ibr7c.json
new file mode 100644
index 000000000000..0c95360c20ce
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/taqys3xr6utmvhoen4ibr7c.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"workshops","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345552,"created":1695629345552,"id":"taqys3xr6utmvhoen4ibr7c","desc":"","links":[],"anchors":{},"children":["nis3qb90g3x913svoftvdss"],"parent":"txkHnVTI9AawnquiublXO","data":{},"title":"Workshops"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/tdh4km6qoyitvdxue4dqxlp.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/tdh4km6qoyitvdxue4dqxlp.json
new file mode 100644
index 000000000000..266d39188d79
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/tdh4km6qoyitvdxue4dqxlp.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.ebruelhart.2023.04","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345579,"created":1695629345579,"id":"tdh4km6qoyitvdxue4dqxlp","desc":"","links":[],"anchors":{},"children":["xgjj1jp3zvveo2jv8wmft3a","s2yk1218knhq5lbnaju4z85","7twqf9cv9ig11s331e289u0","0xohd77tmw9oh150mmfwi4h","ktof6hozo4e81z55ub2z0ey"],"parent":"oa2ug1z440tznkfspdpf4fz","data":{},"title":"04"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/to6lmssoye1gldz8milv2dq.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/to6lmssoye1gldz8milv2dq.json
new file mode 100644
index 000000000000..f432d2a9115a
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/to6lmssoye1gldz8milv2dq.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"to6lmssoye1gldz8milv2dq","title":"Sample Preparation","desc":"","updated":1668153924233,"created":1650905842486,"custom":{},"fname":"methodology.sample-preparation","type":"note","vault":{"fsPath":"vault"},"contentHash":"df421cac67b873500f1ad8d78010e192","links":[],"anchors":{},"children":[],"parent":"iq3hz5b7sskcu56bl8pgbwq","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/toexcdqwxzo1lm7vur7sqce.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/toexcdqwxzo1lm7vur7sqce.json
new file mode 100644
index 000000000000..9f8c8421badf
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/toexcdqwxzo1lm7vur7sqce.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"toexcdqwxzo1lm7vur7sqce","title":"2023-07-04","desc":"","updated":1688535859269,"created":1688455583186,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.07.04","type":"note","vault":{"fsPath":"vault"},"contentHash":"a022862daac96483344882451f1990a7","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":39,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":43,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":47,"column":0,"depth":2}},"children":[],"parent":"wwzjtgx2uhjbijqzagd3x3m","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/tofizf0eb38rduuw6ffnzba.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/tofizf0eb38rduuw6ffnzba.json
new file mode 100644
index 000000000000..355f8728a44d
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/tofizf0eb38rduuw6ffnzba.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"tofizf0eb38rduuw6ffnzba","title":"Welcome","desc":"","updated":1673619261609,"created":1673617203399,"custom":{},"fname":"welcome","type":"note","vault":{"fsPath":"vault"},"contentHash":"02a3e3c9bc445d2e67975c7406c9c383","links":[{"type":"wiki","from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"value":"root","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"root"}},{"type":"wiki","from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"value":"open-notebook.dbgi.setup","position":{"start":{"line":42,"column":118,"offset":1734},"end":{"line":42,"column":146,"offset":1762},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook.dbgi.setup"}},{"from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"type":"backlink","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"value":"welcome"},{"from":{"fname":"open-notebook.dbgi.pmallard.2023.02.07","id":"inakqagsydtih7ls65eh3nb","vaultName":"vault"},"type":"backlink","position":{"start":{"line":78,"column":29,"offset":1586},"end":{"line":78,"column":40,"offset":1597},"indent":[]},"value":"welcome"},{"from":{"fname":"meetings.2023.02.22.program.notes.open-science","id":"f1b58fewgynd36i6voll7gc","vaultName":"vault"},"type":"backlink","position":{"start":{"line":22,"column":16,"offset":619},"end":{"line":22,"column":27,"offset":630},"indent":[]},"value":"welcome"}],"anchors":{"what-is-this-note":{"type":"header","text":"What is this note","value":"what-is-this-note","line":15,"column":0,"depth":2},"tutorial":{"type":"header","text":"Tutorial","value":"tutorial","line":19,"column":0,"depth":2},"dendron":{"type":"header","text":"Dendron.","value":"dendron","line":21,"column":0,"depth":3},"what-is-dendron-":{"type":"header","text":"What is Dendron ?","value":"what-is-dendron-","line":23,"column":0,"depth":4},"where-to-get-more-info-on-dendron-":{"type":"header","text":"Where to get more info on Dendron ?","value":"where-to-get-more-info-on-dendron-","line":29,"column":0,"depth":4},"concrete-steps-to-access-and-contribute-to-the-dbgi-dendron":{"type":"header","text":"Concrete steps to access and contribute to the DBGI Dendron","value":"concrete-steps-to-access-and-contribute-to-the-dbgi-dendron","line":34,"column":0,"depth":4},"questions-comments-suggestions-":{"type":"header","text":"Questions, comments, suggestions ?","value":"questions-comments-suggestions-","line":51,"column":0,"depth":2}},"children":[],"parent":"txkHnVTI9AawnquiublXO","data":{}},"body":"
Welcome
\n
Welcome the the DBGI Dendron.
\n
As you might have read in The DBGI Dendron notes, we will follow the Open Notebook Science approach to document our research in the frame of the DBGI projects.
\n
For this we use the Dendron system as a mean to efficiently capture notes and publish them.
\n
What is this note
\n
This note is a succinct tutorial note aiming to get you started in the use of the DBGI Dendron.
\n
Tutorial
\n
Dendron.
\n
What is Dendron ?
\n
\n
Dendron is an open-source, local-first, markdown-based, note-taking tool. Think of it as a cache for everything that you care about - if you've spent more then five minutes solving a problem, you should never spent any more time solving the same exact problem.
\n
Dendron is a knowledge base built by and for developers and integrates natively with IDEs like VS Code and VSCodium.
\n
\n
Where to get more info on Dendron ?
\n
\n
You can get more information in the Dendron system at the official website www.dendron.so
\n
All the Dendron documentation is hosted here https://wiki.dendron.so/ . It is, obviously, a Dendron itself.
\n
\n
Concrete steps to access and contribute to the DBGI Dendron
Feel free to explore and contribute.\nA first, important step could be to configure VSCode so that you can easily add a daily note. See steps described at Setup
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/trobxy1y9ercdkmgxm3h8pv.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/trobxy1y9ercdkmgxm3h8pv.json
new file mode 100644
index 000000000000..141af079fa34
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/trobxy1y9ercdkmgxm3h8pv.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"trobxy1y9ercdkmgxm3h8pv","title":"2022-11-11","desc":"","updated":1669735012064,"created":1668169944222,"traitIds":["open-notebook-mw"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2022.11.11","type":"note","vault":{"fsPath":"vault"},"contentHash":"23e9fd6179523dc3d886e914604b5e0b","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"code":{"type":"header","text":"CODE","value":"code","line":15,"column":0,"depth":2},"change-dbgi_id":{"type":"header","text":"Change dbgi_id","value":"change-dbgi_id","line":16,"column":0,"depth":4},"change-column-name":{"type":"header","text":"Change column name","value":"change-column-name","line":22,"column":0,"depth":4},"trigger-updated_on-column":{"type":"header","text":"Trigger updated_on column","value":"trigger-updated_on-column","line":28,"column":0,"depth":4}},"children":[],"parent":"2n9ssq0hbel5s1n7o4aiqhl","data":{}},"body":"
2022-11-11
\n
This is Maëlle's DBGI daily open-notebook.
\n
Today is 2022.11.11
\n
CODE
\n
Change dbgi_id
\n
UPDATE samples \n SET \"DBGI_SPL_ID\" = REPLACE(\"DBGI_SPL_ID\",'DBGI_SPL_','dbgi_');\n
\n
Change column name
\n
ALTER TABLE pyinat\n RENAME COLUMN DBGI_ID TO EMI_EXTERNAL_ID;\n
\n
Trigger updated_on column
\n
CREATE OR REPLACE FUNCTION updated_on_function() \n RETURNS TRIGGER LANGUAGE plpgsql \n AS $$ \n BEGIN \n IF OLD!=NEW THEN \n NEW.updated_on = now(); \n END IF; \n RETURN new; \n END \n $$;\n
\n
CREATE TRIGGER updated_on_trigger \n AFTER UPDATE ON pyinat \n FOR EACH ROW \n EXECUTE PROCEDURE updated_on_function();\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/trzsyfzfrls2if6tjt9dy5u.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/trzsyfzfrls2if6tjt9dy5u.json
new file mode 100644
index 000000000000..464ab1c810d9
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/trzsyfzfrls2if6tjt9dy5u.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"trzsyfzfrls2if6tjt9dy5u","title":"Species Selection","desc":"","updated":1672347099671,"created":1645712028668,"custom":{},"fname":"species-selection","type":"note","vault":{"fsPath":"vault"},"contentHash":"f631df5b535417fa443e8b6714eb7959","links":[],"anchors":{"species-list":{"type":"header","text":"Species list","value":"species-list","line":9,"column":0,"depth":1},"species-selection":{"type":"header","text":"Species selection","value":"species-selection","line":14,"column":0,"depth":1},"saxifragaceae":{"type":"header","text":"Saxifragaceae","value":"saxifragaceae","line":18,"column":0,"depth":2},"papaver":{"type":"header","text":"Papaver","value":"papaver","line":26,"column":0,"depth":2},"baldellia":{"type":"header","text":"Baldellia","value":"baldellia","line":31,"column":0,"depth":2},"audrey-le-cabec":{"type":"header","text":"Audrey Le Cabec","value":"audrey-le-cabec","line":37,"column":0,"depth":2}},"children":[],"parent":"txkHnVTI9AawnquiublXO","data":{}},"body":"
Species Selection
\n
Species list
\n
For an overview of species present in the UniFr botanical garden you can have a look at the http://www.dbgi.org/dendron-jbuf/ hierarchy.
\n
Species selection
\n
Possible candidates for species to select for the pilot.
Theofania Patsiou (Parisod group at UniFr is interested in profiling Saxifragaceae) and we have an ongoing project on metabolomics of 200 Saxifraga florulenta.\nMaybe a family to think about
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/tvdn3jw4nqebyf7hozvvddb.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/tvdn3jw4nqebyf7hozvvddb.json
new file mode 100644
index 000000000000..e592fc6819cc
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/tvdn3jw4nqebyf7hozvvddb.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.alecabec.2023.05","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345559,"created":1695629345559,"id":"tvdn3jw4nqebyf7hozvvddb","desc":"","links":[],"anchors":{},"children":["2brymurxjvzna9waixemuna","eskkdd6xy9vcwqs4ckd84fz","e1m3ycj6u45qh4wrb1zay42","fzcxvbu7h0hdan74cetvee2","qlb4frklnbw6ijvsr17f9go","7tkcxc8tg11jeuax6k1aqc4","qzue59bpc7karf19b75eb6v","zktipm9otdm0nbk4wdcjtls","oihbgu0s5xsp03f9ejl88zp","9salqiqyef2oo8lc726iwh5","2fronkvjr89kz0o5rcsyo2z","8ept2yu5gzdhgqmb7480xvv"],"parent":"s31xn7xb1bk6xuusjykyfgv","data":{},"title":"05"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/twrgu2q3yot15pz1v2en7f6.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/twrgu2q3yot15pz1v2en7f6.json
new file mode 100644
index 000000000000..5529ac2948b8
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/twrgu2q3yot15pz1v2en7f6.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"twrgu2q3yot15pz1v2en7f6","title":"17","desc":"","updated":1689601789408,"created":1689585522386,"custom":{},"fname":"open-notebook.dbgi.lcappelletti.2023.07.17","type":"note","vault":{"fsPath":"vault"},"contentHash":"ed923983e1160a365e73b012e02d12ee","links":[],"anchors":{"this-is-luca-cappellettis-dbgi-daily-open-notebook":{"type":"header","text":"This is Luca Cappelletti's DBGI daily open-notebook.","value":"this-is-luca-cappellettis-dbgi-daily-open-notebook","line":8,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":12,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":20,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":27,"column":0,"depth":2}},"children":[],"parent":"sef56d6u8k6dnm61naamfmz","data":{}},"body":"
17
\n
This is Luca Cappelletti's DBGI daily open-notebook.
Verify whether BioLink comes with the support of biological samples.
\n
\n
Done
\n
\n
What you are currently reading is my first entry in Denron DBGI.
\n
BioCypher and PheKnowLator are primarily pipelines in Python for combining KGs. We need an efficient and robust pipeline to create a KG from scratch, and first thing first Python is likely not the suitable candidate for such objectives, altough it is okay when one needs to smash things togheter. The objective of the Earth Metabolome KG is not to compose through ETL several existing ontologies and KGs, but to create a new KG from the metabolomic data and its metadata. While it is vital for the long term viability of these data to be compatible with the existing ontologies and graphs by following the naming conventions for species for instance from the likes of NCBITaxon, it is not the goal of this KG to ingest them. The Earth Metabolome KG is not a KG of KGs, it is a KG of metabolomic data, that may be included in several other KGs.
\n
KG-Hub is similar in nature to the aforementioned libraries, but also provides a web-hosting that makes it particularly easy to access versioned KGs. The standardized nature of the node types and edge types through the biolink format make it easier to combine different KGs, thought in several instances the level of detail in the hierarchy of biolink effectively used is too coarse and stops at extremely high level labels such as biolink:NamedThing. Aiming to have a standardized and structured set of labels will be vital for the Earth Metabolome KG, but they will also need to be finely grained and detailed enough to be useful for the biological samples and metabolomic data. The ease of access and clear versioning of the KG-Hub data is surely something to be imitated. Finally, the tight integration of the GRAPE library with KG-Hub is something to be considered for the Earth Metabolome KG.
\n
Asked to Deepak Unni, who is the main author of BioLink, whether it provides support for biological samples as it is unclear from the BioLink paper and website.
\n
\n
Todo tomorrow
\n
\n
Write an entry describing the benefits of having a hierarchy for the Earth Metabolome KG's node & edge labels. Use Biolink KG as an example of an effective characterization of metadata based on the metadata topology.
\n
Delve into whether the data models suggested by Chris Mungall are a viable solution for the characterization of biological samples.
\n
Bother the authors of the resources that seem to be the most promising for the Earth Metabolome KG so to make sure I am not missing anything and neither reinventing the wheel.
\n
Start to delve into the ENPKG Workflow so as to plan a holystic refactoring, if needed.
\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/txikxbizqd293ie392vvl79.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/txikxbizqd293ie392vvl79.json
new file mode 100644
index 000000000000..539743d216f7
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/txikxbizqd293ie392vvl79.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.mwannier","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345588,"created":1695629345588,"id":"txikxbizqd293ie392vvl79","desc":"","links":[],"anchors":{},"children":["ebf7zmqp4iniyzz0xs0grhw","hjgld8jupnd9k7kzqe0ubra"],"parent":"rw6o4yru1k43k19sz84xt6m","data":{},"title":"Mwannier"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/u3r5ovqpurmj36nsvmetsl8.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/u3r5ovqpurmj36nsvmetsl8.json
new file mode 100644
index 000000000000..907acd2bdedb
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/u3r5ovqpurmj36nsvmetsl8.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"u3r5ovqpurmj36nsvmetsl8","title":"Emi Semantic Model","desc":"","updated":1695045009288,"created":1693548771769,"custom":{},"fname":"emi-semantic-model","type":"note","vault":{"fsPath":"vault"},"contentHash":"cc5bf33c52f4916ab8816ce14b641f70","links":[{"type":"wiki","from":{"fname":"emi-semantic-model","id":"u3r5ovqpurmj36nsvmetsl8","vaultName":"vault"},"value":"emi-semantic-model","position":{"start":{"line":4,"column":1,"offset":12},"end":{"line":4,"column":23,"offset":34},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"emi-semantic-model"}},{"type":"wiki","from":{"fname":"emi-semantic-model","id":"u3r5ovqpurmj36nsvmetsl8","vaultName":"vault"},"value":"emi-semantic-model","position":{"start":{"line":6,"column":38,"offset":73},"end":{"line":6,"column":60,"offset":95},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"emi-semantic-model"}},{"from":{"fname":"emi-semantic-model","id":"u3r5ovqpurmj36nsvmetsl8","vaultName":"vault"},"type":"backlink","position":{"start":{"line":4,"column":1,"offset":12},"end":{"line":4,"column":23,"offset":34},"indent":[]},"value":"emi-semantic-model"},{"from":{"fname":"emi-semantic-model","id":"u3r5ovqpurmj36nsvmetsl8","vaultName":"vault"},"type":"backlink","position":{"start":{"line":6,"column":38,"offset":73},"end":{"line":6,"column":60,"offset":95},"indent":[]},"value":"emi-semantic-model"},{"from":{"fname":"open-notebook.dbgi.pmallard.2023.09.01","id":"jj89v4nh02m729y6re4si5y","vaultName":"vault"},"type":"backlink","position":{"start":{"line":16,"column":1,"offset":224},"end":{"line":16,"column":23,"offset":246},"indent":[]},"value":"emi-semantic-model"},{"from":{"fname":"open-notebook.dbgi.pmallard.2023.09.01","id":"jj89v4nh02m729y6re4si5y","vaultName":"vault"},"type":"backlink","position":{"start":{"line":18,"column":38,"offset":285},"end":{"line":18,"column":60,"offset":307},"indent":[]},"value":"emi-semantic-model"}],"anchors":{"sandbox":{"type":"header","text":"Sandbox","value":"sandbox","line":8,"column":0,"depth":1},"description-of-the-ssn":{"type":"header","text":"Description of the SSN","value":"description-of-the-ssn","line":34,"column":0,"depth":1},"what-is-sosa-compared-to-ssn":{"type":"header","text":"What is SOSA compared to SSN","value":"what-is-sosa-compared-to-ssn","line":44,"column":0,"depth":2},"modularization":{"type":"header","text":"Modularization","value":"modularization","line":48,"column":0,"depth":2},"origins-of-ssn-and-sosa":{"type":"header","text":"Origins of SSN and SOSA","value":"origins-of-ssn-and-sosa","line":65,"column":0,"depth":2},"core-terms-and-properties-for-sosa":{"type":"header","text":"Core terms and properties for SOSA","value":"core-terms-and-properties-for-sosa","line":78,"column":0,"depth":2},"observation-perspective":{"type":"header","text":"Observation perspective","value":"observation-perspective","line":91,"column":0,"depth":3},"actuation-perspective":{"type":"header","text":"Actuation perspective","value":"actuation-perspective","line":96,"column":0,"depth":3},"sampling-perspective":{"type":"header","text":"Sampling perspective","value":"sampling-perspective","line":101,"column":0,"depth":3},"schema-of-an-emi-observation-procedure":{"type":"header","text":"Schema of an EMI Observation procedure","value":"schema-of-an-emi-observation-procedure","line":129,"column":0,"depth":4},"schema-of-an-emi-collection-procedure":{"type":"header","text":"Schema of an EMI Collection procedure","value":"schema-of-an-emi-collection-procedure","line":151,"column":0,"depth":4},"schema-of-an-emi-extraction-procedure":{"type":"header","text":"Schema of an EMI Extraction procedure","value":"schema-of-an-emi-extraction-procedure","line":170,"column":0,"depth":4},"schema-of-an-emi-mass-spectrometry-analysis-procedure":{"type":"header","text":"Schema of an EMI Mass Spectrometry analysis procedure","value":"schema-of-an-emi-mass-spectrometry-analysis-procedure","line":184,"column":0,"depth":4},"schema-of-an-emi-overall-procedure":{"type":"header","text":"Schema of an EMI overall procedure","value":"schema-of-an-emi-overall-procedure","line":200,"column":0,"depth":3}},"children":[],"parent":"txkHnVTI9AawnquiublXO","data":{}},"body":"
The Semantic Sensor Network (SSN) ontology is an ontology for describing sensors and their observations, the involved procedures, the studied features of interest, the samples used to do so, and the observed properties, as well as actuators. SSN follows a horizontal and vertical modularization architecture by including a lightweight but self-contained core ontology called SOSA (Sensor, Observation, Sample, and Actuator) for its elementary classes and properties. With their different scope and different degrees of axiomatization, SSN and SOSA are able to support a wide range of applications and use cases, including satellite imagery, large-scale scientific monitoring, industrial and household infrastructures, social sensing, citizen science, observation-driven ontology engineering, and the Web of Things. Both ontologies are described below, and examples of their usage are given.
\n
\n
What is SOSA compared to SSN
\n
\n
SOSA provides a lightweight core for SSN and aims at broadening the target audience and application areas that can make use of Semantic Web ontologies. At the same time, SOSA acts as minimal interoperability fall-back level, i.e., it defines those common classes and properties for which data can be safely exchanged across all uses of SSN, its modules, and SOSA.
\n
\n
Modularization
\n
This section appears convoluted for me (PMA).
\n
A CHatGPT digest indicates
\n
\n
In simple terms, this section talks about breaking down a complex set of rules and definitions (called an ontology) into smaller, more manageable parts to make it easier to use. Imagine it as dividing a big book into chapters, each with its own topic. There are two main ways to do this:
\n
Vertical Segmentation: This is like dividing the book into chapters where each chapter builds on the previous one. For example, Chapter 2 builds on what you learned in Chapter 1. However, Chapter 1 doesn't need anything from Chapter 2. It's like a one-way street.
\n
Horizontal Segmentation: This is like having chapters that depend on each other. Chapter 3 might need some information from Chapter 2 to make sense, and Chapter 2 might need something from Chapter 1. It's like a network of connections between chapters.
\n
The goal of all this is to make it easier for different groups of people to use the rules and definitions (ontology) in a way that suits their needs. So, for example, one group might want to use a simplified version of the rules (like a summary of a book), while another group might want to use a more detailed version (like reading every page of the book). This helps different people work with the same set of rules but in ways that make sense to them.
\n
\n
In any case it is clear the the SOSA is at the core of the SSN and has been build to be reused for other use cases than the ones initially envisioned. This makes it valuable in our case.
The initial SSN has been criticized for its partially inconsistent handling of virtual sensors (including software and simulations) and related classes and properties. The new SSN and SOSA address this issue by allowing all major classes to be virtual, and to better support humans and other animals as agents.
\n
\n
This is great as it should allow us to model as sensors :
\n
\n
humans (e.g. a Collector)
\n
machines (e.g a Mass Spectrometer)
\n
softwares (e.g. a Computational MS soft such as Sirius)
\n
\n
Core terms and properties for SOSA
\n
Overview of Classes and Properties\nThis section is non-normative.
\n classDiagram\n\n\t\tCollector --> Field_Sampling : sosa_madeSampling\n\n class Collector{\n rdf:type a sosa:Sampler\n }\n class Field_Sampling{\n rdf:type a sosa:Sample\n }\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/u4b5rb3tmprpqfq986iswih.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/u4b5rb3tmprpqfq986iswih.json
new file mode 100644
index 000000000000..781f2f7d12b6
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/u4b5rb3tmprpqfq986iswih.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"u4b5rb3tmprpqfq986iswih","title":"2023-05-02","desc":"","updated":1683485976241,"created":1683034596724,"traitIds":["open-notebook-ebruelhart"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2023.05.02","type":"note","vault":{"fsPath":"vault"},"contentHash":"4649e780378d2d98074fc8cb0f711322","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"presentation":{"type":"header","text":"Presentation","value":"presentation","line":16,"column":0,"depth":1},"set-up":{"type":"header","text":"Set up","value":"set-up","line":42,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":50,"column":0,"depth":1},"solutions":{"type":"header","text":"Solutions","value":"solutions","line":70,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":78,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":80,"column":0,"depth":1}},"children":[],"parent":"2cv0y9hikhbt1jjla689ern","data":{}},"body":"
Download a picture and show an example on iNaturalist
\n
Now stays some questions to finish the job correclty:
\n
\n
Which cloud to use? (already discussed about nextcloud)
\n
Where to host ? (On the field collection server or on another server)
\n
clicbot or not clicbot ? And if clicbot, how to manage it? (As inat won't be happy if they know)
\n
How to organize pictures on the cloud? (one folder per sample with folder named with dbgi code, one folder per layer, one folder per layer per upload, ...)
The code is made to adapt. It signifies that if we create a new project or a new layer, it will be integrated. If a project is created, don't forget to add the dbgi user as manager, because it is the one that is used to download the files.
\n
What the code is doing:
\n
\n
Downloads gpkg layers (point layers) and pictures
\n
Changes pictures names by deleting all problematic symbols and replacing white spaces by underscores
\n
Detects the CRS (Coordinates reference system) of gpkg files and converts to EPSG:4326, that is the CRS used by inat
\n
Converts the gpkg files to csv files
\n
Compresses pictures if they are bigger than 5MB (while loop with little decrease each time, so that the pictures are not compressed to heavily)
\n
Adds coordinates and dbgi code in pictures metadata to facilitate inat import.
\n
\n
Now stays some questions to finish the job correclty:
\n
\n
Which cloud to use? (already discussed about nextcloud)
\n
Where to host ? (On the field collection server or on another server)
\n
clicbot or not clicbot ? And if clicbot, how to manage it? (As inat won't be happy if they know)
\n
How to organize pictures on the cloud? (one folder per sample with folder named with dbgi code, one folder per layer, one folder per layer per upload, ...)
\n
\n
Solutions
\n
Try to make 2 different tags in Subject\nHomogeneize the pictures sizes (all to have the same pixel sizes)\ncookie cutter -> makes packages\nNextcloud good solution\ncthoyt.com -> documentation, how to do packages
\n
code
\n
links
\n
test
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/u6onqx095u4r2pji608uku0.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/u6onqx095u4r2pji608uku0.json
new file mode 100644
index 000000000000..b460f08b50a8
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/u6onqx095u4r2pji608uku0.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"u6onqx095u4r2pji608uku0","title":"2022-02-28","desc":"","updated":1655027552109,"created":1646035368686,"traitIds":["journalNote"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2022.02.28","type":"note","vault":{"fsPath":"vault"},"contentHash":"c296a9c8ded3b4c2fe7cfc4a448cc773","links":[],"anchors":{"starting-the-day":{"type":"header","text":"Starting the day","value":"starting-the-day","line":11,"column":0,"depth":2},"todays-todo":{"type":"header","text":"Today's Todo","value":"todays-todo","line":15,"column":0,"depth":3},"today-notes--ideas":{"type":"header","text":"Today Notes & ideas","value":"today-notes--ideas","line":21,"column":0,"depth":3},"ending-the-day":{"type":"header","text":"Ending the day","value":"ending-the-day","line":26,"column":0,"depth":2},"future-todo":{"type":"header","text":"Future Todo","value":"future-todo","line":28,"column":0,"depth":3}},"children":[],"parent":"wgc5uzvwqoxzgfws17ihtpn","data":{}},"body":"
Write the welcome introduction, the pilote presentation and the methodology on the Dendron website
\n
Compare the extraction methods to find a good one for the project
\n\n
\n
Today Notes & ideas
\n
Ending the day
\n
Future Todo
\n
\n
[ ]
\n\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/u7s9s8a1tay4or5xhz14ohn.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/u7s9s8a1tay4or5xhz14ohn.json
new file mode 100644
index 000000000000..57199aa5ec03
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/u7s9s8a1tay4or5xhz14ohn.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.commons.pmallard.2023.07","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345557,"created":1695629345557,"id":"u7s9s8a1tay4or5xhz14ohn","desc":"","links":[],"anchors":{},"children":["z5vxmoa2qvyo2bn1nq4jo41"],"parent":"suu6tvd8mg243bnkeiam1ac","data":{},"title":"07"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/u9oouu4kv2hvljpxhx7oqhh.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/u9oouu4kv2hvljpxhx7oqhh.json
new file mode 100644
index 000000000000..116218662b30
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/u9oouu4kv2hvljpxhx7oqhh.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"u9oouu4kv2hvljpxhx7oqhh","title":"2023-04-28","desc":"","updated":1683905585442,"created":1682668069890,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.04.28","type":"note","vault":{"fsPath":"vault"},"contentHash":"9195acfb0d58c2124834ceee908fde3e","links":[],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":20,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":21,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":23,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":71,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":73,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":75,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":79,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":81,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":82,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":83,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":86,"column":0,"depth":2}},"children":[],"parent":"kc7cc1lgen7049um6b9vb1q","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/ubj4yl08jyx6844fad17wjb.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/ubj4yl08jyx6844fad17wjb.json
new file mode 100644
index 000000000000..6bcd5bf147ec
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/ubj4yl08jyx6844fad17wjb.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"ubj4yl08jyx6844fad17wjb","title":"2023-03-21","desc":"","updated":1679491221745,"created":1679384309263,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.03.21","type":"note","vault":{"fsPath":"vault"},"contentHash":"d6092e767a5ce5029e38c50f76a947b2","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":34,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":38,"column":0,"depth":2}},"children":[],"parent":"ijpbaqnc0ewvgkwl0qq0m7e","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/uc2gvgvs3w3x21efqvjf9fc.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/uc2gvgvs3w3x21efqvjf9fc.json
new file mode 100644
index 000000000000..77d0a384591b
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/uc2gvgvs3w3x21efqvjf9fc.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"uc2gvgvs3w3x21efqvjf9fc","title":"2023-05-05","desc":"","updated":1683273178649,"created":1683273164467,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.05.05","type":"note","vault":{"fsPath":"vault"},"contentHash":"3a351b5d291d115470bf568af3efa05a","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":25,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":44,"column":0,"depth":2}},"children":[],"parent":"kpf9zs71io037d9pc13w2ky","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/uc5kxcbfvli6vk0z9x1b2mb.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/uc5kxcbfvli6vk0z9x1b2mb.json
new file mode 100644
index 000000000000..41b9fa311fb1
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/uc5kxcbfvli6vk0z9x1b2mb.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"uc5kxcbfvli6vk0z9x1b2mb","title":"2023-06-16","desc":"","updated":1686926983893,"created":1686909886236,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.06.16","type":"note","vault":{"fsPath":"vault"},"contentHash":"34aa3e090a560abdbfba9d7a993fcd65","links":[],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":20,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":23,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":24,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":26,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":29,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":31,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":35,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":37,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":39,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":40,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":41,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":44,"column":0,"depth":2}},"children":[],"parent":"4vdnom6lqejdj7tre2evd8z","data":{}},"body":"
2023-06-16
\n
This is Audrey's DBGI daily open-notebook.
\n
Today is 2023.06.16
\n
Todo today
\n
[ ] Creation of the architecture following enpkg workflow (toujours en cours, cf PM lundi ou mardi)\n[ ] prepare meeting of monday 19th (slide)
anaconda installée, visual code config OK, script architecture n'a pas fonctionné
\n
Paused
\n
Done
\n
GNPS réalisé avec les QC !!! à relancer
\n
Notes
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/uchpm4tt1enj34vr209qauc.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/uchpm4tt1enj34vr209qauc.json
new file mode 100644
index 000000000000..2fc3950b70f2
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/uchpm4tt1enj34vr209qauc.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"uchpm4tt1enj34vr209qauc","title":"2023-09-17","desc":"","updated":1694935574463,"created":1694932202779,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.09.17","type":"note","vault":{"fsPath":"vault"},"contentHash":"502d097ebe3d1e158813bec6cee2ac8b","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":49,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":51,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":53,"column":0,"depth":2},"todo-tomorrow-one-day--or-never":{"type":"header","text":"Todo tomorrow, one day ... or never","value":"todo-tomorrow-one-day--or-never","line":59,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":61,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":62,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":63,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":66,"column":0,"depth":2}},"children":[],"parent":"3gtlbi2k7w3yr100owwky6q","data":{}},"body":"
Poelen\tJorrit \tjhpoelen+biodigicon@jhpoelen.nl\tRonin Institute / UC Santa Barbara Cheadle Center for Biodiversity and Ecological Restoration\tIndependent Biodiversity Informatician
\n
\n
\n
Building a Digital Extended Specimen One Association at a Time: What Does It Take to Extend OBI Herbarium Records with their Associated GenBank Sequences?\t\"Specimen from Natural History Collections are physical repositories of genetic information. Genetic sequences extracted from specimen are stored in genetic sequence databases like the openly accessible GenBank at NCBI, DNA DataBank of Japan, or the European Nucleotide Archive (ENA). While researchers and collection managers make efforts to associate (or link) Natural History Collection records with their derived genetic accession records, extra work is need to make these associations explicit. We describe how a collaboration between a biodiversity informatics expert and collection managers of the Hoover/OBI Herbarium at CalPoly, San Luis Obispo, CA was forged with the aim to extend OBI specimen records to include their associated GenBank records. In addition, we quantify the costs of creating these specimen extensions, and discuss the socio-economic capacity needed to repeat this digital specimen extension process for the hundreds of millions of specimen records available globally today.\"\tKatelin, Pearson, Arizona State University; Jenn, Yost, Cal Poly State University San Luis Obispo, Cal
\n
\n
\n
Fitzsimmons \tGrant \tsupport@specifysoftware.org\tSpecify Collections Consortium\tTechnical Support Manager\tAdvancing Biological Collections with Specify 7\t\"The Specify Collections Consortium has been working hard to engineer new features for its flagship collections management platform, Specify 7. Specify 7 has undergone improvements to its architecture, data operations, and user interface. We have updated and streamlined the software while introducing new capabilities.
\n
\n
\n
These enhancements improve productivity in managing and sharing collections data with the biodiversity community. They involve deduplicating and merging records, adding a customizable statistics panel, integrating Specify Network links to data aggregators like GBIF and iDigBio, expanding Extended Specimen integration, and adhering to the FAIR principles.
\n
We have also introduced the form “meta menu”, accessible from any data form. It includes functions like running reports and labels, configuring carry forward and auto-numbering, inspecting edit history, ordering results, switching subview display formats, editing form definitions, and sharing URL links. Furthermore, we have enhanced the functionality of Specify's tree interface, WorkBench, Query Builder, and system configuration tools for editing App Resources. Navigation within the application has been improved by creating unique URLs for each page. We have integrated Weblate, a continuous localization service, for crowdsourced translation of Specify 7 into any language.
\n
We are excited to showcase the numerous capabilities of Specify, which provide effective digitization, management, and integration for biological collections.\"\tGrant, Fitzsimmons
\n
\n
\n
Levy \tRick\trichard.levy@botanicgardens.org\tDenver Botanic Gardens\tScientific Data Manager\tRapid and reproducible specimen data formatting\t
\n
\n
\n
\"The Darwin Core has worked wonders in terms of making biodiversity data readily accessible and consistent among institutions. However, it is not necessarily designed in a way that best suits the needs of those on the ground working to record data consistently and efficiently. For example, broad fields such as occurrenceRemarks may contain the existence of associated material samples, associated digital records, or contextual information describing the project for which a specimen was collected. The field dynamicProperties can contain valuable variable descriptions of organisms but requires JavaScript Object Notation formatting that is not typically the way a field or lab researcher records notes. In this presentation I will share our process for rapid and reproducible data formatting for incoming specimens at the Kathryn Kalmbach Herbarium of Vascular Plants and the Sam Mitchel Herbarium of Fungi. Repositories for each method, respectively, can be found at the following locations:\nhttps://github.com/DenverBotanicGardens/khd_voucherDataProcessingScript\nhttps://github.com/DenverBotanicGardens/dbg_voucherDataProcessingScript\"\tErnie, Marx, Colorado State University
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/ueqdl22uvswqqk0k53iftqv.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/ueqdl22uvswqqk0k53iftqv.json
new file mode 100644
index 000000000000..b9f11c0df2cf
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/ueqdl22uvswqqk0k53iftqv.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"ueqdl22uvswqqk0k53iftqv","title":"2023-04-25","desc":"","updated":1682515161583,"created":1682409247590,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.04.25","type":"note","vault":{"fsPath":"vault"},"contentHash":"5c89df460099b01be994cd37a113f1c9","links":[],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":20,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":21,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":23,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":37,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":39,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":41,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":51,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":53,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":54,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":55,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":58,"column":0,"depth":2}},"children":[],"parent":"kc7cc1lgen7049um6b9vb1q","data":{}},"body":"
creation Repo Git for Coleus to access to the data
\n
creation of the gitrepo on the servor
\n\n
mk dir gitrepo\ncd gitrepo #pour entrer dans gitrepo \ngit clone url du lien git \n
\n\n
Add files from the local git repo to github
\n\n
Paused
\n
Done
\n
Notes
\n
..cd retourner au dossier d'avant \ngit status \ngit add \ncommit -m \"message\" \ngit push \n
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/uonxd6a91s8ucjllv1aqx5k.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/uonxd6a91s8ucjllv1aqx5k.json
new file mode 100644
index 000000000000..4098fa889fbd
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/uonxd6a91s8ucjllv1aqx5k.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"uonxd6a91s8ucjllv1aqx5k","title":"Redelings_2017","desc":"","updated":1656059639673,"created":1656059639673,"isDir":false,"custom":{"isDir":false},"fname":"biblio.redelings_2017","type":"note","vault":{"fsPath":"vault"},"contentHash":"1f7bb71d719f352a1f8e75810ddd1bfd","links":[{"type":"wiki","from":{"fname":"biblio.redelings_2017","id":"uonxd6a91s8ucjllv1aqx5k","vaultName":"vault"},"value":"article","position":{"start":{"line":5,"column":14,"offset":129},"end":{"line":5,"column":25,"offset":140},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"article"}},{"type":"wiki","from":{"fname":"biblio.redelings_2017","id":"uonxd6a91s8ucjllv1aqx5k","vaultName":"vault"},"value":"benjamin-d.-redelings","position":{"start":{"line":6,"column":12,"offset":152},"end":{"line":6,"column":37,"offset":177},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"benjamin-d.-redelings"}},{"type":"wiki","from":{"fname":"biblio.redelings_2017","id":"uonxd6a91s8ucjllv1aqx5k","vaultName":"vault"},"value":"mark-t.-holder","position":{"start":{"line":6,"column":39,"offset":179},"end":{"line":6,"column":57,"offset":197},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"mark-t.-holder"}},{"type":"wiki","from":{"fname":"biblio.redelings_2017","id":"uonxd6a91s8ucjllv1aqx5k","vaultName":"vault"},"value":"2017-03-01","position":{"start":{"line":7,"column":9,"offset":206},"end":{"line":7,"column":23,"offset":220},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2017-03-01"}},{"type":"wiki","from":{"fname":"biblio.redelings_2017","id":"uonxd6a91s8ucjllv1aqx5k","vaultName":"vault"},"value":"2022-03-01","position":{"start":{"line":8,"column":15,"offset":235},"end":{"line":8,"column":29,"offset":249},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-03-01"}},{"type":"wiki","from":{"fname":"biblio.redelings_2017","id":"uonxd6a91s8ucjllv1aqx5k","vaultName":"vault"},"value":"taxonomy","position":{"start":{"line":12,"column":11,"offset":425},"end":{"line":12,"column":23,"offset":437},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"taxonomy"}},{"type":"wiki","from":{"fname":"biblio.redelings_2017","id":"uonxd6a91s8ucjllv1aqx5k","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":13,"column":3,"offset":440},"end":{"line":13,"column":10,"offset":447},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio.redelings_2017","id":"uonxd6a91s8ucjllv1aqx5k","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":13,"column":12,"offset":449},"end":{"line":13,"column":29,"offset":466},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio.redelings_2017","id":"uonxd6a91s8ucjllv1aqx5k","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":13,"column":31,"offset":468},"end":{"line":13,"column":41,"offset":478},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}}],"anchors":{"a-supertree-pipeline-for-summarizing-phylogenetic-and-taxonomic-information-for-millions-of-species":{"type":"header","text":"A supertree pipeline for summarizing phylogenetic and taxonomic information for millions of species","value":"a-supertree-pipeline-for-summarizing-phylogenetic-and-taxonomic-information-for-millions-of-species","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"abstract":{"type":"header","text":"Abstract","value":"abstract","line":24,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":33,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
Redelings_2017
\n
A supertree pipeline for summarizing phylogenetic and taxonomic information for millions of species
We present a new supertree method that enables rapid estimation of a summary tree on the scale of millions of leaves. This supertree method summarizes a collection of input phylogenies and an input taxonomy. We introduce formal goals and criteria for such a supertree to satisfy in order to transparently and justifiably represent the input trees. In addition to producing a supertree, our method computes annotations that describe which grouping in the input trees support and conflict with each group in the supertree. We compare our supertree construction method to a previously published supertree construction method by assessing their performance on input trees used to construct the Open Tree of Life version 4, and find that our method increases the number of displayed input splits from 35,518 to 39,639 and decreases the number of conflicting input splits from 2,760 to 1,357. The new supertree method also improves on the previous supertree construction method in that it produces no unsupported branches and avoids unnecessary polytomies. This pipeline is currently used by the Open Tree of Life project to produce all of the versions of project’s “synthetic tree” starting at version 5. This software pipeline is called “\npropinquity\n”. It relies heavily on “\notcetera\n”—a set of C++ tools to perform most of the steps of the pipeline. All of the components are free software and are available on GitHub.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/urq110fh5eyr0umzizuzcnu.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/urq110fh5eyr0umzizuzcnu.json
new file mode 100644
index 000000000000..28128354e73f
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/urq110fh5eyr0umzizuzcnu.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"urq110fh5eyr0umzizuzcnu","title":"2023-09-14","desc":"","updated":1694649912436,"created":1694647488452,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.09.14","type":"note","vault":{"fsPath":"vault"},"contentHash":"08a5d1df9347ccd3843fa2362b51237a","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2023.09.14","id":"urq110fh5eyr0umzizuzcnu","vaultName":"vault"},"value":"gbif","position":{"start":{"line":16,"column":4,"offset":227},"end":{"line":16,"column":12,"offset":235},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"gbif"}}],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":26,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":28,"column":0,"depth":2},"gbif-publishers":{"type":"header","text":"GBIF Publishers","value":"gbif-publishers","line":32,"column":0,"depth":3},"gbif-organizations-grscicoll":{"type":"header","text":"GBIF Organizations (GRSciColl)","value":"gbif-organizations-grscicoll","line":37,"column":0,"depth":3},"notes":{"type":"header","text":"Notes","value":"notes","line":44,"column":0,"depth":2},"todo-tomorrow-one-day--or-never":{"type":"header","text":"Todo tomorrow, one day ... or never","value":"todo-tomorrow-one-day--or-never","line":49,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":51,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":52,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":53,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":56,"column":0,"depth":2}},"children":[],"parent":"3gtlbi2k7w3yr100owwky6q","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/uspjcm0281qp5i2z8jfuakw.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/uspjcm0281qp5i2z8jfuakw.json
new file mode 100644
index 000000000000..35c34a8185ae
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/uspjcm0281qp5i2z8jfuakw.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"uspjcm0281qp5i2z8jfuakw","title":"Mctavish_2015","desc":"","updated":1656059639673,"created":1656059639673,"isDir":false,"custom":{"isDir":false},"fname":"biblio.mctavish_2015","type":"note","vault":{"fsPath":"vault"},"contentHash":"d293f3d67e9d566359cab6ed5f7e1fd7","links":[{"type":"wiki","from":{"fname":"biblio.mctavish_2015","id":"uspjcm0281qp5i2z8jfuakw","vaultName":"vault"},"value":"article","position":{"start":{"line":5,"column":14,"offset":119},"end":{"line":5,"column":25,"offset":130},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"article"}},{"type":"wiki","from":{"fname":"biblio.mctavish_2015","id":"uspjcm0281qp5i2z8jfuakw","vaultName":"vault"},"value":"emily-jane-mctavish","position":{"start":{"line":6,"column":12,"offset":142},"end":{"line":6,"column":35,"offset":165},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"emily-jane-mctavish"}},{"type":"wiki","from":{"fname":"biblio.mctavish_2015","id":"uspjcm0281qp5i2z8jfuakw","vaultName":"vault"},"value":"cody-e.-hinchliff","position":{"start":{"line":6,"column":37,"offset":167},"end":{"line":6,"column":58,"offset":188},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"cody-e.-hinchliff"}},{"type":"wiki","from":{"fname":"biblio.mctavish_2015","id":"uspjcm0281qp5i2z8jfuakw","vaultName":"vault"},"value":"james-f.-allman","position":{"start":{"line":6,"column":60,"offset":190},"end":{"line":6,"column":79,"offset":209},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"james-f.-allman"}},{"type":"wiki","from":{"fname":"biblio.mctavish_2015","id":"uspjcm0281qp5i2z8jfuakw","vaultName":"vault"},"value":"joseph-w.-brown","position":{"start":{"line":6,"column":81,"offset":211},"end":{"line":6,"column":100,"offset":230},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"joseph-w.-brown"}},{"type":"wiki","from":{"fname":"biblio.mctavish_2015","id":"uspjcm0281qp5i2z8jfuakw","vaultName":"vault"},"value":"karen-a.-cranston","position":{"start":{"line":6,"column":102,"offset":232},"end":{"line":6,"column":123,"offset":253},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"karen-a.-cranston"}},{"type":"wiki","from":{"fname":"biblio.mctavish_2015","id":"uspjcm0281qp5i2z8jfuakw","vaultName":"vault"},"value":"mark-t.-holder","position":{"start":{"line":6,"column":125,"offset":255},"end":{"line":6,"column":143,"offset":273},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"mark-t.-holder"}},{"type":"wiki","from":{"fname":"biblio.mctavish_2015","id":"uspjcm0281qp5i2z8jfuakw","vaultName":"vault"},"value":"jonathan-a.-rees","position":{"start":{"line":6,"column":145,"offset":275},"end":{"line":6,"column":165,"offset":295},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"jonathan-a.-rees"}},{"type":"wiki","from":{"fname":"biblio.mctavish_2015","id":"uspjcm0281qp5i2z8jfuakw","vaultName":"vault"},"value":"stephen-a.-smith","position":{"start":{"line":6,"column":167,"offset":297},"end":{"line":6,"column":187,"offset":317},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"stephen-a.-smith"}},{"type":"wiki","from":{"fname":"biblio.mctavish_2015","id":"uspjcm0281qp5i2z8jfuakw","vaultName":"vault"},"value":"2015-09-01","position":{"start":{"line":7,"column":9,"offset":326},"end":{"line":7,"column":23,"offset":340},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2015-09-01"}},{"type":"wiki","from":{"fname":"biblio.mctavish_2015","id":"uspjcm0281qp5i2z8jfuakw","vaultName":"vault"},"value":"2022-03-01","position":{"start":{"line":8,"column":15,"offset":355},"end":{"line":8,"column":29,"offset":369},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-03-01"}},{"type":"wiki","from":{"fname":"biblio.mctavish_2015","id":"uspjcm0281qp5i2z8jfuakw","vaultName":"vault"},"value":"taxonomy","position":{"start":{"line":12,"column":11,"offset":680},"end":{"line":12,"column":23,"offset":692},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"taxonomy"}},{"type":"wiki","from":{"fname":"biblio.mctavish_2015","id":"uspjcm0281qp5i2z8jfuakw","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":13,"column":3,"offset":695},"end":{"line":13,"column":10,"offset":702},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio.mctavish_2015","id":"uspjcm0281qp5i2z8jfuakw","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":13,"column":12,"offset":704},"end":{"line":13,"column":29,"offset":721},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio.mctavish_2015","id":"uspjcm0281qp5i2z8jfuakw","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":13,"column":31,"offset":723},"end":{"line":13,"column":41,"offset":733},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}}],"anchors":{"phylesystem-a-git-based-data-store-for-community-curated-phylogenetic-estimates-fig-1":{"type":"header","text":"Phylesystem: a git-based data store for community-curated phylogenetic estimates: Fig. 1.","value":"phylesystem-a-git-based-data-store-for-community-curated-phylogenetic-estimates-fig-1","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":25,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
Mctavish_2015
\n
Phylesystem: a git-based data store for community-curated phylogenetic estimates: Fig. 1.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/uu8fzox520jcg1eskjku4kb.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/uu8fzox520jcg1eskjku4kb.json
new file mode 100644
index 000000000000..22943beee5fe
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/uu8fzox520jcg1eskjku4kb.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"uu8fzox520jcg1eskjku4kb","title":"2023-01-06","desc":"","updated":1673044204986,"created":1672994780104,"traitIds":["open-notebook-eb"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2023.01.06","type":"note","vault":{"fsPath":"vault"},"contentHash":"377ae75a9878d13641a90f2028885fe2","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":26,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":28,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":30,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":32,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":34,"column":0,"depth":1}},"children":[],"parent":"rwwstq9pnk2fqonf946x951","data":{}},"body":"
2023-01-06
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2023.01.06
\n
To do
\n
\n
\n
Relabel the falcon with the bigger labels
\n
\n
\n
Try to host correctly the dbgi maps with geoserver
\n
\n
\n
Prepare the inserts for the mass spec analysis
\n
\n
\n
Optimize the communication between QGIS and iNaturalist
\n
\n
\n
Make the QField API work, to not manually create QField CSV. In order to automatize the process of hervesting.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/uychcr92ff7k1rombsetop3.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/uychcr92ff7k1rombsetop3.json
new file mode 100644
index 000000000000..55eba9e27e6c
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/uychcr92ff7k1rombsetop3.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"uychcr92ff7k1rombsetop3","title":"2023-07-27","desc":"","updated":1690471867158,"created":1690443935483,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.07.27","type":"note","vault":{"fsPath":"vault"},"contentHash":"eecf7b7cf8209e27d6f9af8d83d27df1","links":[{"from":{"fname":"open-notebook.dbgi.pmallard.2023.08.09","id":"cm2e2wpc8piw6qco896meya","vaultName":"vault"},"type":"backlink","position":{"start":{"line":21,"column":34,"offset":302},"end":{"line":21,"column":76,"offset":344},"indent":[]},"value":"open-notebook.dbgi.pmallard.2023.07.27"}],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"point-edouard":{"type":"header","text":"Point Edouard","value":"point-edouard","line":24,"column":0,"depth":3},"phenology":{"type":"header","text":"Phenology","value":"phenology","line":45,"column":0,"depth":1},"point-maelle":{"type":"header","text":"Point Maelle","value":"point-maelle","line":87,"column":0,"depth":3},"point-marco":{"type":"header","text":"Point Marco","value":"point-marco","line":103,"column":0,"depth":3},"paused":{"type":"header","text":"Paused","value":"paused","line":122,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":124,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":126,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":128,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":130,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":131,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":132,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":135,"column":0,"depth":2}},"children":[],"parent":"vvcscq2gtvhdsmtmbqfqjqb","data":{}},"body":"
Created a new test layer in the JBUF project on QGis\nAlso synced it with Qfield\nAdded and additonal field with a constrained vocabulary (helicity l/r)
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/v0029honfl4v4m4tyoy8ul1.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/v0029honfl4v4m4tyoy8ul1.json
new file mode 100644
index 000000000000..c1f7cfb5e606
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/v0029honfl4v4m4tyoy8ul1.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.pmallard.2023.04","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345610,"created":1695629345610,"id":"v0029honfl4v4m4tyoy8ul1","desc":"","links":[],"anchors":{},"children":["wli8olqef70t0l79fkxh113","l6q4u73d01xqilb5qvle9ga","4k73c0km05uz5514qhf6fyq","lc3lmnctd0ah057akmurkuq"],"parent":"kdf7w680pcf9ofqywy9qgyl","data":{},"title":"04"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/v1h2y8tff24zhi8urx43l99.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/v1h2y8tff24zhi8urx43l99.json
new file mode 100644
index 000000000000..453285a046f7
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/v1h2y8tff24zhi8urx43l99.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"v1h2y8tff24zhi8urx43l99","title":"2023-02-10","desc":"","updated":1676041284120,"created":1676041250502,"traitIds":["open-notebook-edefossez"],"custom":{},"fname":"open-notebook.dbgi.edefossez.2023.02.10","type":"note","vault":{"fsPath":"vault"},"contentHash":"33e837963453224fa2f33a81df459b44","links":[],"anchors":{"this-is-manuss-dbgi-daily-open-notebook":{"type":"header","text":"This is Manus's DBGI daily open-notebook.","value":"this-is-manuss-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":24,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":26,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":28,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":30,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":32,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":33,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":34,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":37,"column":0,"depth":2}},"children":[],"parent":"cugityyeuinhj1gcev04dag","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/v2nr0qvs7lm0caryei97f4u.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/v2nr0qvs7lm0caryei97f4u.json
new file mode 100644
index 000000000000..4998d8b50e60
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/v2nr0qvs7lm0caryei97f4u.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"v2nr0qvs7lm0caryei97f4u","title":"2023-01-19","desc":"","updated":1674289994894,"created":1674143215718,"traitIds":["open-notebook-mw"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.01.19","type":"note","vault":{"fsPath":"vault"},"contentHash":"1a7215d9c27a251cd3dc6c5ae09bd016","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":20,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":22,"column":0,"depth":2},"clean-the-dendron-database-repository":{"type":"header","text":"Clean the dendron database repository","value":"clean-the-dendron-database-repository","line":24,"column":0,"depth":4},"directus-user-permissions":{"type":"header","text":"directus user permissions","value":"directus-user-permissions","line":28,"column":0,"depth":4},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":32,"column":0,"depth":2}},"children":[],"parent":"8ssbwflafvawcjbtofvfiuq","data":{}},"body":"
2023-01-19
\n
This is Maëlle's DBGI daily open-notebook.
\n
Today is 2023.01.19
\n
TODO
\n
\n
Clean the dendron database repository
\n
\n
CODE
\n
NOTES
\n
Clean the dendron database repository
\n
I moved the database.softwares and database.versioning into the open-notebook of the days they were created (respectively 22.09.2022 and 20.10.2022)
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/v3eyay0icafeftx6kbyemlm.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/v3eyay0icafeftx6kbyemlm.json
new file mode 100644
index 000000000000..2d34801fe775
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/v3eyay0icafeftx6kbyemlm.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"v3eyay0icafeftx6kbyemlm","title":"Workflow","desc":"","updated":1655570123996,"created":1655569968455,"custom":{},"fname":"workflow","type":"note","vault":{"fsPath":"vault"},"contentHash":"7be8390e4849fffba2293e682173aae2","links":[],"anchors":{},"children":[],"parent":"txkHnVTI9AawnquiublXO","data":{}},"body":"
Workflow
\n
As said, this initiative will aim to characterize the chemodiversity of the all botanical gardens of Switzerland. However, this ambitious objective will require us to evaluate our methodology. For this, we started by selecting two botanical collections: the Jardin Botanique de l’Université de Fribourg (JBUF) and the Jardin Botanique de Neuchâtel (JBN). This choice was made for practical reasons (these are the respective working places of the DBGI initiators) but also because these two gardens each offer their unique characteristics. On one hand the JBUF presents over 5000 species systematically organized to reflect the Angiosperm Phylogeny Group (APG) system. The JBUF researchers are specialized in conservation biology. On the other hand, the JBN presents over 2000 species organized in 8 sub-gardens. The JBN has a focus on ethnomedical plants.\nBelow we will briefly outline the research workflow envisioned for the DBGI. The main steps have been schematized on Figure 3. The overall workflow can be divided into two main parts. One dealing with physical objects (upper part of Fig. 3) and a second one dealing with data and metadata acquired from these objects (lower part of Fig. 3).
\n
\nFigure 3. Overview of the DBGI main steps and data
\n
Regarding the physical objects, the steps are pretty simple and straightforward. Starting from a botanical garden (a living specimens collection), the aim is to sample each specimen and to build two libraries: a library of dried plant material and a library of chemical extracts. The dried plant material library will serve as a backup for extractions to be repeated and for orthogonal analysis (e.g. genetic sequencing). The chemical extracts library will be the source material for the mass-spectrometry digitization stage. This library will also be available for backups and orthogonal analysis (e.g. NMR profiling or bioassay campaigns). Complementary to herbarium, these two libraries offer an efficient way (reduced space, long term storage) to capture and conserve the chemistry of the botanical gardens.
\n
For all operations occurring on physical objects (sampling, conservation, extraction), metadata are collected to document the experiment. For each botanical garden, data collection is made at the species level. A species is collected for each garden, curated and taxonomically resolved (using the Open Tree of Life framework) in order to be compared across gardens. The Botalista platform will also be exploited at this step. For each collected sample, data are acquired at a finer granularity (namely at the specimen level). Here we take advantage of the iNaturalist platform and app. Using a smartphone, pictures of the sampled specimen (including eventual label in the botanical gardens, sampled organ and collection label), collector identity, date and geolocation are conveniently captured at the time of the collection. This data is then automatically collected by the iNaturalist DBGI project. The data of the project can then be programmatically accessed via the iNaturalist API. All species, specimens and experimental metadata will be collected and managed through an SQL database and accessed through a NocoDB instance for a convenient tracking of the samples by the DBGI participants.
\n
The mass-spectrometry digitization then constitutes the core of the chemical information acquisition process. We use Ultra High Performance Liquid Chromatography coupled to High Resolution Mass Spectrometry (UHPLC-HRMS) to acquire fragmentation data in an untargeted fashion. Building on our computational metabolomics expertise we then organize and annotate the acquired pool of MS data. Here we will take advantage of five central tools (four of which were conceived by us). Molecular networking [7] will serve as a basis for spectral organization. The metabolite annotation will be performed by spectral matching against a theoretical natural products spectral database [8] and via a taxonomically informed scoring process [9] fed by an open resource of natural products biological occurrences (LOTUS [10]).
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/v3fdi4bdlq18my5cmlmi4rd.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/v3fdi4bdlq18my5cmlmi4rd.json
new file mode 100644
index 000000000000..d6eb7f365d6b
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/v3fdi4bdlq18my5cmlmi4rd.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"v3fdi4bdlq18my5cmlmi4rd","title":"2023-03-13","desc":"","updated":1678692989681,"created":1678690359214,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.03.13","type":"note","vault":{"fsPath":"vault"},"contentHash":"1f19405efcf2833c8fe30516c392c0d3","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":27,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":29,"column":0,"depth":2},"drug-discovery-dashboard":{"type":"header","text":"Drug discovery dashboard","value":"drug-discovery-dashboard","line":31,"column":0,"depth":3},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":38,"column":0,"depth":2},"for-later":{"type":"header","text":"For later","value":"for-later","line":43,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":49,"column":0,"depth":2}},"children":[],"parent":"ijpbaqnc0ewvgkwl0qq0m7e","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/v57fgljw7emcgezmwiqok4e.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/v57fgljw7emcgezmwiqok4e.json
new file mode 100644
index 000000000000..8fd21c8619b5
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/v57fgljw7emcgezmwiqok4e.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"v57fgljw7emcgezmwiqok4e","title":"2023-04-26","desc":"","updated":1682524024020,"created":1682488692766,"traitIds":["open-notebook-lschwegler"],"custom":{},"fname":"open-notebook.dbgi.lschwegler.2023.04.26","type":"note","vault":{"fsPath":"vault"},"contentHash":"eae4a7b778629bc11e4c48a0983c3950","links":[],"anchors":{"this-is-lenditas-dbgi-daily-open-notebook":{"type":"header","text":"This is Lendita's DBGI daily open-notebook.","value":"this-is-lenditas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":23,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":25,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":27,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":83,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":85,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":86,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":87,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":90,"column":0,"depth":2}},"children":[],"parent":"k1podevswt9ww6fu8pm77tt","data":{}},"body":"
Today I spent most of the day weighing the remaining samples. Unfortunately, the CSV list was not up to date and so I simply entered the weight here.\nIt is now definitely clear that the drying of the plants has something to do with the length of the freeze-drying. Because this time the samples were in the freeze-dryer for 72 hours and all but unfortunately 2 samples were dry.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/vava3y79ue4aqpjw61sgg7y.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/vava3y79ue4aqpjw61sgg7y.json
new file mode 100644
index 000000000000..a21720886034
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/vava3y79ue4aqpjw61sgg7y.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"vava3y79ue4aqpjw61sgg7y","title":"2023-03-02","desc":"","updated":1677770238133,"created":1677740995370,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.03.02","type":"note","vault":{"fsPath":"vault"},"contentHash":"19c38e6a4e1ca294211d0973c8145474","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":24,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":26,"column":0,"depth":2},"meeting":{"type":"header","text":"meeting","value":"meeting","line":28,"column":0,"depth":3},"sample_explorer":{"type":"header","text":"sample_explorer","value":"sample_explorer","line":33,"column":0,"depth":3},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":38,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":44,"column":0,"depth":2}},"children":[],"parent":"ijpbaqnc0ewvgkwl0qq0m7e","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/vechu9nek0ai9pac4taotye.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/vechu9nek0ai9pac4taotye.json
new file mode 100644
index 000000000000..2a0c7dd05b45
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/vechu9nek0ai9pac4taotye.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.ebruelhart.2022","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345572,"created":1695629345572,"id":"vechu9nek0ai9pac4taotye","desc":"","links":[],"anchors":{},"children":["wgc5uzvwqoxzgfws17ihtpn","oysesv3d976s837b9j76nhg","gayd6f5rjdzpelcl7due270","3ck5i1foueo5cjl270x5w3s","n8vkdmb1r45m3z6lqqrvd94","f5s4h26cmipsm6itdloyva0","jb94w8oc7a9tv04izb0g544"],"parent":"vefznkti42cod2zly25fftk","data":{},"title":"2022"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/vefznkti42cod2zly25fftk.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/vefznkti42cod2zly25fftk.json
new file mode 100644
index 000000000000..fb969cfa2428
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/vefznkti42cod2zly25fftk.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.ebruelhart","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345571,"created":1695629345571,"id":"vefznkti42cod2zly25fftk","desc":"","links":[],"anchors":{},"children":["vechu9nek0ai9pac4taotye","oa2ug1z440tznkfspdpf4fz"],"parent":"rw6o4yru1k43k19sz84xt6m","data":{},"title":"Ebruelhart"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/viyndxj85kbuiit4npcx249.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/viyndxj85kbuiit4npcx249.json
new file mode 100644
index 000000000000..7bbe5d765001
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/viyndxj85kbuiit4npcx249.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"viyndxj85kbuiit4npcx249","title":"Data Management Pilot","desc":"","updated":1677072214942,"created":1676362486775,"custom":{},"fname":"meetings.2023.02.22.program.notes.data-management-pilot","type":"note","vault":{"fsPath":"vault"},"contentHash":"f4a2d4e89504935d5854b6450a59b7ef","links":[{"from":{"fname":"meetings.2023.02.22.program","id":"33r62tekbrtckkfadan4kwj","vaultName":"vault"},"type":"backlink","position":{"start":{"line":41,"column":1,"offset":1307},"end":{"line":41,"column":60,"offset":1366},"indent":[]},"value":"meetings.2023.02.22.program.notes.data-management-pilot"}],"anchors":{},"children":[],"parent":"9676i362aou4xnjhjczonjx","data":{}},"body":"
Data Management Pilot
\n
Data Management Pilot
\n
Show briefly
\n
\n
How we fetch data from iNat ?
\n
How is this managed in the PG ?
\n
How is it accessible through Directus ?
\n
\n
Why did we choose Directus (pros and cons)
\n
\n
cons :
\n
served form a machine accessible only behind the UniFR VPN (not Directus specific but should be discussed as it will impact other tools)
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/vm01cfxjhem1j6exiizdre9.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/vm01cfxjhem1j6exiizdre9.json
new file mode 100644
index 000000000000..46eb7485927a
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/vm01cfxjhem1j6exiizdre9.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.edefossez.2023","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345582,"created":1695629345582,"id":"vm01cfxjhem1j6exiizdre9","desc":"","links":[],"anchors":{},"children":["cugityyeuinhj1gcev04dag","ogzue2kcra1h7e1d3jbtsfx"],"parent":"lrlb8u9vx1lu5gvg7bbzu5i","data":{},"title":"2023"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/vo11ivkxgc2ckam20bkkx9j.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/vo11ivkxgc2ckam20bkkx9j.json
new file mode 100644
index 000000000000..12ae98e7a1e6
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/vo11ivkxgc2ckam20bkkx9j.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"vo11ivkxgc2ckam20bkkx9j","title":"Lcappelletti","desc":"","updated":1689585230451,"created":1689585196555,"custom":{},"fname":"templates.open-notebook.dbgi.lcappelletti","type":"note","vault":{"fsPath":"vault"},"contentHash":"8ea8b288ae95e6d28ce0d41b1e795696","links":[],"anchors":{"this-is-luca-cappellettis-dbgi-daily-open-notebook":{"type":"header","text":"This is Luca Cappelletti's DBGI daily open-notebook.","value":"this-is-luca-cappellettis-dbgi-daily-open-notebook","line":9,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":13,"column":0,"depth":2},"doing":{"type":"header","text":"Doing","value":"doing","line":15,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":17,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":19,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":21,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":23,"column":0,"depth":2},"":{"type":"header","text":"","value":"","line":25,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":26,"column":0,"depth":3},"-2":{"type":"header","text":"","value":"-2","line":27,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":30,"column":0,"depth":2}},"children":[],"parent":"b51e1k7qbe6jj1quhxnag04","data":{}},"body":"
Lcappelletti
\n
This is Luca Cappelletti's DBGI daily open-notebook.
\n
Today is {{ CURRENT_YEAR }}.{{ CURRENT_MONTH }}.{{ CURRENT_DAY }}
\n
Todo today
\n
Doing
\n
Paused
\n
Done
\n
Notes
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/vq34odtkfcwfgq0wh3z8rsk.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/vq34odtkfcwfgq0wh3z8rsk.json
new file mode 100644
index 000000000000..3e9e3865a7d8
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/vq34odtkfcwfgq0wh3z8rsk.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"vq34odtkfcwfgq0wh3z8rsk","title":"2023-06-29","desc":"","updated":1688022907340,"created":1688019911945,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.06.29","type":"note","vault":{"fsPath":"vault"},"contentHash":"b0a8c1624975565cd8540c8a4da70c2b","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":29,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":33,"column":0,"depth":2}},"children":[],"parent":"0rjtydgu2hme3vo7hu0vkj8","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/vq7ux2x2ogb8rjo948g9wrb.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/vq7ux2x2ogb8rjo948g9wrb.json
new file mode 100644
index 000000000000..124e9732340c
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/vq7ux2x2ogb8rjo948g9wrb.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"vq7ux2x2ogb8rjo948g9wrb","title":"Templa","desc":"","updated":1691056074607,"created":1691055978825,"custom":{},"fname":"open-notebook.dbgi.lcappelletti.2023.08.03","type":"note","vault":{"fsPath":"vault"},"contentHash":"a61c3faf27ba685256ad27c02bb0cd64","links":[],"anchors":{"this-is-luca-cappellettis-dbgi-daily-open-notebook":{"type":"header","text":"This is Luca Cappelletti's DBGI daily open-notebook.","value":"this-is-luca-cappellettis-dbgi-daily-open-notebook","line":9,"column":0,"depth":1},"done":{"type":"header","text":"Done","value":"done","line":13,"column":0,"depth":2},"to-be-discussed":{"type":"header","text":"To be discussed","value":"to-be-discussed","line":18,"column":0,"depth":2}},"children":[],"parent":"p2qm1kmy4dcnmxjh0agsjms","data":{}},"body":"
Templa
\n
This is Luca Cappelletti's DBGI daily open-notebook.
\n
Today is 2023.08.03
\n
Done
\n
Finished first early version of Rust MGF documents parser and validator, mascot-rs, now availabl online from crate, with documentation and tests.
What is the difference in MGF documents between the charges with and without the plus sign?
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/vrl2ey4vuvmomo8zj14wx6u.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/vrl2ey4vuvmomo8zj14wx6u.json
new file mode 100644
index 000000000000..ba22452d07cc
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/vrl2ey4vuvmomo8zj14wx6u.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"vrl2ey4vuvmomo8zj14wx6u","title":"wetlab","desc":"","updated":1687271838417,"created":1687270862924,"custom":{},"fname":"Methodology.wetlab","type":"note","vault":{"fsPath":"vault"},"contentHash":"e23c86c1ee7f88561fdb3cdf06ce0e64","links":[{"type":"wiki","from":{"fname":"Methodology.wetlab","id":"vrl2ey4vuvmomo8zj14wx6u","vaultName":"vault"},"value":"database.tutorial.directus.Basics","position":{"start":{"line":29,"column":47,"offset":1005},"end":{"line":29,"column":84,"offset":1042},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"database.tutorial.directus.Basics"}}],"anchors":{"dbgi-labelisation":{"type":"header","text":"DBGI Labelisation","value":"dbgi-labelisation","line":12,"column":0,"depth":2},"principle":{"type":"header","text":"Principle","value":"principle","line":13,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":22,"column":0,"depth":2},"pratical":{"type":"header","text":"Pratical","value":"pratical","line":32,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":45,"column":0,"depth":2},"plants-collect":{"type":"header","text":"Plant's collect","value":"plants-collect","line":59,"column":0,"depth":2},"extraction":{"type":"header","text":"Extraction","value":"extraction","line":67,"column":0,"depth":2},"lc-ms-analysis":{"type":"header","text":"LC-MS analysis","value":"lc-ms-analysis","line":73,"column":0,"depth":2},"datatreatment":{"type":"header","text":"Datatreatment","value":"datatreatment","line":79,"column":0,"depth":2}},"children":[],"parent":"iq3hz5b7sskcu56bl8pgbwq","data":{}},"body":"
wetlab
\n
DBGI Workflow : from the creation of an DBGI_ID to the LC-MS analysis
\n
In order to use the workflow you will need to have the following account / application : directus, Avery, Qfield, Inaturalist
\n
DBGI Labelisation
\n
Principle
\n
DBGI_ID will allow you to link the plant, the extract and analysis.
\n
DBGI_ID can be composed of :
\n
\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
plant identification
extract code
vial code
dbgi_XXXXXX
YY
ZZ
\n
\n
The plant identification helps you to connect all the plant metadata (localisation, species, genus).
\n
The extract code is corresponding to the stock vial obtained and conserved in freezer.
\n
The vial code is referring to the vial analysed. Usually around 150 µL of stock extract is taken and transferred to a vial for analysis.
\n
At each step you will need to print labels to identify falcon or vials.
\n
Pratical
\n
a. Creation of an account on directus
\n
b. Implementation of the dbgi_ID list using Basics protocol.
\n
c. Download the .csv file with your new dbgi_id
\n
d. Add the following column
\n
\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
plant identification
extract code
vial code
dbgi_XXXXXX
YY
ZZ
\n
\n
e. Label creation using Avery.
\n
Import the corresponding template to avery. Then import the dbgi_ID list.
\n
For plant sample select the column dbgi_ID ; modify the QR code according the dbgi_ID (check QR code with a QR code reader)
\n
For vial label use the vial label columm and create an associated QR code
\n
f. Print label\nSample label are print on L4732 sheet and Vial label are print on L4731 sheet
\n
g. Labelling falcon tube/vial + protect with scotch tape
\n
Plant's collect
\n
a. Before collecting : provide for sufficient falcon tubes with DBGI-ID
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/vu5qkz5lrwslqa9oh2yq0de.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/vu5qkz5lrwslqa9oh2yq0de.json
new file mode 100644
index 000000000000..cb9a19f377a0
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/vu5qkz5lrwslqa9oh2yq0de.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"vu5qkz5lrwslqa9oh2yq0de","title":"Foster_2017","desc":"","updated":1656059639673,"created":1656059639673,"isDir":false,"custom":{"isDir":false},"fname":"biblio.foster_2017","type":"note","vault":{"fsPath":"vault"},"contentHash":"fc2523c97c245cab61a9d059ce726a16","links":[{"type":"wiki","from":{"fname":"biblio.foster_2017","id":"vu5qkz5lrwslqa9oh2yq0de","vaultName":"vault"},"value":"article","position":{"start":{"line":5,"column":14,"offset":58},"end":{"line":5,"column":25,"offset":69},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"article"}},{"type":"wiki","from":{"fname":"biblio.foster_2017","id":"vu5qkz5lrwslqa9oh2yq0de","vaultName":"vault"},"value":"erin-d.-foster","position":{"start":{"line":6,"column":12,"offset":81},"end":{"line":6,"column":30,"offset":99},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"erin-d.-foster"}},{"type":"wiki","from":{"fname":"biblio.foster_2017","id":"vu5qkz5lrwslqa9oh2yq0de","vaultName":"vault"},"value":"ariel-deardorff","position":{"start":{"line":6,"column":32,"offset":101},"end":{"line":6,"column":51,"offset":120},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"ariel-deardorff"}},{"type":"wiki","from":{"fname":"biblio.foster_2017","id":"vu5qkz5lrwslqa9oh2yq0de","vaultName":"vault"},"value":"2017-04-04","position":{"start":{"line":7,"column":9,"offset":129},"end":{"line":7,"column":23,"offset":143},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2017-04-04"}},{"type":"wiki","from":{"fname":"biblio.foster_2017","id":"vu5qkz5lrwslqa9oh2yq0de","vaultName":"vault"},"value":"2022-02-28","position":{"start":{"line":8,"column":15,"offset":158},"end":{"line":8,"column":29,"offset":172},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-02-28"}},{"type":"wiki","from":{"fname":"biblio.foster_2017","id":"vu5qkz5lrwslqa9oh2yq0de","vaultName":"vault"},"value":"open-science","position":{"start":{"line":12,"column":11,"offset":377},"end":{"line":12,"column":27,"offset":393},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-science"}},{"type":"wiki","from":{"fname":"biblio.foster_2017","id":"vu5qkz5lrwslqa9oh2yq0de","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":13,"column":3,"offset":396},"end":{"line":13,"column":10,"offset":403},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio.foster_2017","id":"vu5qkz5lrwslqa9oh2yq0de","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":13,"column":12,"offset":405},"end":{"line":13,"column":29,"offset":422},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio.foster_2017","id":"vu5qkz5lrwslqa9oh2yq0de","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":13,"column":31,"offset":424},"end":{"line":13,"column":41,"offset":434},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}}],"anchors":{"open-science-framework-osf":{"type":"header","text":"Open Science Framework (OSF)","value":"open-science-framework-osf","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"abstract":{"type":"header","text":"Abstract","value":"abstract","line":24,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":29,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
The Open Science Framework (OSF) is a free, open source, research workflow web application developed and maintained by the Center for Open Science (COS).
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/vvcscq2gtvhdsmtmbqfqjqb.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/vvcscq2gtvhdsmtmbqfqjqb.json
new file mode 100644
index 000000000000..4f3a567ff786
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/vvcscq2gtvhdsmtmbqfqjqb.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.pmallard.2023.07","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345613,"created":1695629345613,"id":"vvcscq2gtvhdsmtmbqfqjqb","desc":"","links":[],"anchors":{},"children":["hj6q3ha4293u8y57c4uvm70","0a3imv12qpz8x053ojqpj66","3j8mxgecduk9e74cjqoxem5","yp5i3ny1ae3g1qdg81pazkt","n6ebzlvhe56zvmm935zl068","r8fvke0zeetxl3wyxvnys0r","uychcr92ff7k1rombsetop3"],"parent":"kdf7w680pcf9ofqywy9qgyl","data":{},"title":"07"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/vvjl5eqh65v26cums0cmo2w.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/vvjl5eqh65v26cums0cmo2w.json
new file mode 100644
index 000000000000..de76352a2960
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/vvjl5eqh65v26cums0cmo2w.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"vvjl5eqh65v26cums0cmo2w","title":"2023-03-09","desc":"","updated":1678383228378,"created":1678350205615,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.03.09","type":"note","vault":{"fsPath":"vault"},"contentHash":"817b79f7bd5f599d7bf10761409bb99e","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"dbgi-meeting":{"type":"header","text":"dbgi meeting","value":"dbgi-meeting","line":25,"column":0,"depth":3},"wids-geneva":{"type":"header","text":"WIDS Geneva","value":"wids-geneva","line":32,"column":0,"depth":3},"building-a-data-practice-from-scratch-for-a-reasonable-budget-the-good-the-bad-and-the-ugly":{"type":"header","text":"Building a data practice from scratch for a reasonable budget: The Good, the Bad, and the Ugly","value":"building-a-data-practice-from-scratch-for-a-reasonable-budget-the-good-the-bad-and-the-ugly","line":34,"column":0,"depth":4},"build-you-data-stack":{"type":"header","text":"Build you data stack","value":"build-you-data-stack","line":42,"column":0,"depth":5},"a-stack-is-nothing-without-a-team":{"type":"header","text":"A stack is nothing without a team","value":"a-stack-is-nothing-without-a-team","line":46,"column":0,"depth":5},"key-takeaways":{"type":"header","text":"Key takeaways","value":"key-takeaways","line":64,"column":0,"depth":5},"graph-neural-networks---applications-and-opportunities":{"type":"header","text":"Graph Neural Networks - applications and opportunities","value":"graph-neural-networks---applications-and-opportunities","line":72,"column":0,"depth":4},"graph-and-their-properties":{"type":"header","text":"Graph and their properties","value":"graph-and-their-properties","line":79,"column":0,"depth":5},"what-for":{"type":"header","text":"What for?","value":"what-for","line":90,"column":0,"depth":5},"how":{"type":"header","text":"How?","value":"how","line":99,"column":0,"depth":5},"message-passing-view-of-gnns":{"type":"header","text":"Message passing view of GNNs","value":"message-passing-view-of-gnns","line":108,"column":0,"depth":5},"impact-":{"type":"header","text":"Impact ?","value":"impact-","line":118,"column":0,"depth":5},"conclusion":{"type":"header","text":"Conclusion","value":"conclusion","line":124,"column":0,"depth":5},"databricks":{"type":"header","text":"Databricks","value":"databricks","line":130,"column":0,"depth":4},"mlops":{"type":"header","text":"MLOps","value":"mlops","line":133,"column":0,"depth":5},"databricks-httpswwwdatabrickscom":{"type":"header","text":"Databricks (https://www.databricks.com/)","value":"databricks-httpswwwdatabrickscom","line":145,"column":0,"depth":5},"deploy-code-process":{"type":"header","text":"Deploy code process","value":"deploy-code-process","line":152,"column":0,"depth":5},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":166,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":170,"column":0,"depth":2}},"children":[],"parent":"ijpbaqnc0ewvgkwl0qq0m7e","data":{}},"body":"
Important to know what you want to build and what you want to buy
\n
\n
A stack is nothing without a team
\n
\n
Full stack or specialized team?\nSpecialization typically develops as a team matures and is heavily influenced by the prevailing trends at the time of the team's creation => will shape your HR policy
\n
\n
Data teams models:
\n
\n
Centralized (one manager - small team)
\n
Hybrid
\n
Decentralized (each business unit works on different projects)
\n
Data Mesh (Trendy in Paris)
\n
\n
How to determine the model for your dream team?
\n
\n
The degree of centralization of a team depends not only on the number of people but also on the team's maturity
\n
While decentralization can have advantages, a poorly executed ...
\n
\n
How to avoid spending all your time recruiting?
\n
\n
Let them learn
\n
LET IT GO
\n
\n
Key takeaways
\n
\n
Be prepared to start it all again.
\n
There is no one-size-fits-all solution, but the more you learn about building a tech stack and team, the more informed your decisions will be.
\n
Building a tech stack and a team are interdependent
\n
Recruiting and keeping employees is a big challenge.
\n
\n
Graph Neural Networks - applications and opportunities
\n
Nadya Chernyavskaya, Senior Researcher, CERN
\n
\n
When? Types of data to benefit from GNNs
\n
What For?
\n
How?
\n
\n
Graph and their properties
\n
\n
nodes and edges with features
\n
directed/undirected
\n
connected/disconnected
\n
Self-loops
\n
multi-graph (edges of different types => heterogenous graph)
\n
permutation invariant (challenging to visualise)
\n
\n
==> Graph structure offers much more flexibility:
\n
\n
arbitrary size and complex topological structure
\n
\n
What for?
\n
Learning on graphs:
\n
\n
Node level- predict a property of a node
\n
Edge/Link level - predict links between two nodes (recommendation systems)
\n
Community/Subgraph level - detect if nodes form a community (user profiling task/ diagnostic tasks for rare disorders)
\n
graph level - categorize different graphs (molecule property prediction)
\n
\n
Other tasks: Graph evolution, Graph generation (Drug discovery)
\n
How?
\n
How to represent?
\n
\n
adjacency matrix
\n
edge list
\n
adjacency list
\n
\n
How to represent the features:
\n
\n
Node features x edge features => 3D matrix
\n
\n
Message passing view of GNNs
\n
We can get information about large scale structure by repeating a simple local rule
\n
\n
Rule: My neighbours tell me what they think i should know
\n
This is done for all neghbourhoods and the information is updated
\n
After 3 iterations, i know what my 3 hop neighbours think we all should know
\n
\n
What about the previous information?
\n
\n
Each node keep tracks
\n
\n
Impact ?
\n
\n
traffic prediction in Google maps\n
\n
Nodes: road segments
\n
Edges: connectivity between road segments
\n
Prediction: Time of arrival
\n
\n
\n
\n
Conclusion
\n
\n
When? Graph nerual networks is a very powerful tool for complex and sparse data
\n
What for? They can be successfully applied to a variety of different tasks such a s node classification, graph classification, edge prediction, etc.
\n
How? We learned how to convert graph into a ML ready representation and build a GNN
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/vz859fx0v5r2l5jiwen4z5t.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/vz859fx0v5r2l5jiwen4z5t.json
new file mode 100644
index 000000000000..e11f83af3928
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/vz859fx0v5r2l5jiwen4z5t.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"vz859fx0v5r2l5jiwen4z5t","title":"2023-03-30","desc":"","updated":1680184933598,"created":1680184520453,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.03.30","type":"note","vault":{"fsPath":"vault"},"contentHash":"f6ef39f0030757c3c6307115174af17b","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":34,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":38,"column":0,"depth":2}},"children":[],"parent":"ijpbaqnc0ewvgkwl0qq0m7e","data":{}},"body":"
renders a table with all the data that match the search
\n
\n
Next:
\n
\n
Implement search for exact value or for near value\n
\n
e.g. What contains cholesterol or what contains something that resembles cholesterol
\n
Done with a checklist that triggers the callback for exact or not values
\n
\n
\n
\n
TODO NEXT
\n
Important for redaction
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/w0ve4zdth2mrxb9jl8b9b8y.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/w0ve4zdth2mrxb9jl8b9b8y.json
new file mode 100644
index 000000000000..82ff1b4923a3
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/w0ve4zdth2mrxb9jl8b9b8y.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"w0ve4zdth2mrxb9jl8b9b8y","title":"2023-05-10","desc":"","updated":1683730199414,"created":1683699327300,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.05.10","type":"note","vault":{"fsPath":"vault"},"contentHash":"b5bb3f6612bf54518a765493c9f3bf8e","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":38,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":64,"column":0,"depth":2}},"children":[],"parent":"kpf9zs71io037d9pc13w2ky","data":{}},"body":"
=> see Node.js, Apprendre par la pratique - Thomas Parisot
\n
TODO NEXT
\n
\n
add plots
\n
add SPARQL
\n
Browse wholedataset part\n
\n
Display JSME
\n
Display input
\n
Display table - JSME\n
\n
add Links
\n
Display images
\n
\n
\n
Display table - input\n
\n
add Links
\n
Display images
\n
\n
\n
similarity or exact search\n
\n
Level of similarity?
\n
\n
\n
\n
\n
on organism list => search by genus or species
\n
add 123 as first letter in elements browser
\n
style all app in css file
\n
create a MVC structure
\n
Link from home to pages
\n
README
\n
display molecules structure
\n
\n
Important for redaction
\n
D3.js in action - Elijah Meeks
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/wa62hh70cbmrra0nxu10a69.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/wa62hh70cbmrra0nxu10a69.json
new file mode 100644
index 000000000000..54bf0d21841b
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/wa62hh70cbmrra0nxu10a69.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"wa62hh70cbmrra0nxu10a69","title":"2023-02-10","desc":"","updated":1676042168851,"created":1676013381292,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.02.10","type":"note","vault":{"fsPath":"vault"},"contentHash":"6f7038a50e135406386915b105e4e772","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"draft-a-program-for-the-22nd-meeting":{"type":"header","text":"Draft a program for the 22nd meeting","value":"draft-a-program-for-the-22nd-meeting","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":110,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":112,"column":0,"depth":2},"paused-":{"type":"header","text":"Paused %>%","value":"paused-","line":114,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":116,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":117,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":119,"column":0,"depth":3},"reformated-notes-traits":{"type":"header","text":"Reformated notes traits","value":"reformated-notes-traits","line":121,"column":0,"depth":3},"notes":{"type":"header","text":"Notes","value":"notes","line":125,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":127,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":129,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":130,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":131,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":134,"column":0,"depth":2}},"children":[],"parent":"g53xjv8ow93e7yy6srggzcf","data":{}},"body":"
2023-02-10
\n
This is PMA's DBGI daily open-notebook.
\n
Today is 2023.02.10
\n
Todo today
\n
Draft a program for the 22nd meeting
\n
Check with Manu
\n
9:30 Start
\n
\n
\n
Coffee ☕ (10 min)
\n
\n
\n
Round table : short presentation 30 sec per person (10 min)
\n
\n
\n
Program of the day (10 min)
\n
\n
\n
Some background on Ecometabolomics & Natural Products based drug discovery - preliminary works and the origins of DBGI. Manu 10-15 min
\n
\n
\n
DBGI & EMI. PMA 10-15 min
\n
\n
\n
What has been done until now ?
\n
\n
DBGI wet lab Pilot UniFr/UniNe. Edouard 10 min
\n
DBGI data management pilot UniFr. Maëlle 10 min
\n
\n
\n
\n
Coffee Break ☕ (10 min)
\n
\n
\n
The DBGI-KM structure
\n
\n
Personnel\n
\n
1 FTE (1.5 years) Postdoc UniFr (discuss CV)
\n
1 FTE (1 year) Postdoc UniNe (discuss CV)
\n
0.5 FTE (2years) inhouse computational data scientist ETHZ-SIS (establish exactly who ?)
\n
1 FTE (1.5years) inhouse computational data scientist SIB (establish exactly who ?)
\n
\n
\n
Gant chart (Who does what when ?)
\n
Communication
\n
\n
\n
\n
\n
\n
Lunch break (1:30)
\n
\n
\n
Dendron Workshop + Open Science discussion + Communication means
So has to have the an open-notebook-dbgi. hiererachy which can live with other open-notebook-xxxx- files\nUpdated templates accordingly
\n
Notes
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/wck5b60vibf6m2nm0zfit4i.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/wck5b60vibf6m2nm0zfit4i.json
new file mode 100644
index 000000000000..89550d6fa083
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/wck5b60vibf6m2nm0zfit4i.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"wck5b60vibf6m2nm0zfit4i","title":"Bo_2019","desc":"","updated":1656059639673,"created":1656059639673,"isDir":false,"custom":{"isDir":false},"fname":"biblio.bo_2019","type":"note","vault":{"fsPath":"vault"},"contentHash":"d9094b5d88efd145cbe5a7524d1522af","links":[{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"song-bo","position":{"start":{"line":5,"column":12,"offset":106},"end":{"line":5,"column":23,"offset":117},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"song-bo"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"hu-guohai","position":{"start":{"line":5,"column":25,"offset":119},"end":{"line":5,"column":38,"offset":132},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"hu-guohai"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"cai-hechen","position":{"start":{"line":5,"column":40,"offset":134},"end":{"line":5,"column":54,"offset":148},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"cai-hechen"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"zhou-hongcheng","position":{"start":{"line":5,"column":56,"offset":150},"end":{"line":5,"column":74,"offset":168},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"zhou-hongcheng"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"chen-hongyun","position":{"start":{"line":5,"column":76,"offset":170},"end":{"line":5,"column":92,"offset":186},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"chen-hongyun"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"liu-huan","position":{"start":{"line":5,"column":94,"offset":188},"end":{"line":5,"column":106,"offset":200},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"liu-huan"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"zhao-jianming","position":{"start":{"line":5,"column":108,"offset":202},"end":{"line":5,"column":125,"offset":219},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"zhao-jianming"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"liu-jie","position":{"start":{"line":5,"column":127,"offset":221},"end":{"line":5,"column":138,"offset":232},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"liu-jie"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"yang-jinlong","position":{"start":{"line":5,"column":140,"offset":234},"end":{"line":5,"column":156,"offset":250},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"yang-jinlong"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"wei-jinpu","position":{"start":{"line":5,"column":158,"offset":252},"end":{"line":5,"column":171,"offset":265},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"wei-jinpu"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"cheng-le","position":{"start":{"line":5,"column":173,"offset":267},"end":{"line":5,"column":185,"offset":279},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"cheng-le"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"wang-mei","position":{"start":{"line":5,"column":187,"offset":281},"end":{"line":5,"column":199,"offset":293},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"wang-mei"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"mu-ranchang","position":{"start":{"line":5,"column":201,"offset":295},"end":{"line":5,"column":216,"offset":310},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"mu-ranchang"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"sahu-kumar-sunil","position":{"start":{"line":5,"column":218,"offset":312},"end":{"line":5,"column":238,"offset":332},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"sahu-kumar-sunil"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"yang-ting","position":{"start":{"line":5,"column":241,"offset":335},"end":{"line":5,"column":254,"offset":348},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"yang-ting"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"yang-tuo","position":{"start":{"line":5,"column":256,"offset":350},"end":{"line":5,"column":268,"offset":362},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"yang-tuo"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"li-wangsheng","position":{"start":{"line":5,"column":270,"offset":364},"end":{"line":5,"column":286,"offset":380},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"li-wangsheng"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"mu-weixue","position":{"start":{"line":5,"column":288,"offset":382},"end":{"line":5,"column":301,"offset":395},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"mu-weixue"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"cai-xianchu","position":{"start":{"line":5,"column":303,"offset":397},"end":{"line":5,"column":318,"offset":412},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"cai-xianchu"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"chen-xiaoli","position":{"start":{"line":5,"column":320,"offset":414},"end":{"line":5,"column":335,"offset":429},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"chen-xiaoli"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"liu-xin","position":{"start":{"line":5,"column":337,"offset":431},"end":{"line":5,"column":348,"offset":442},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"liu-xin"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"wang-xuebin","position":{"start":{"line":5,"column":350,"offset":444},"end":{"line":5,"column":365,"offset":459},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"wang-xuebin"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"he-xuefei","position":{"start":{"line":5,"column":367,"offset":461},"end":{"line":5,"column":380,"offset":474},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"he-xuefei"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"xu-xun","position":{"start":{"line":5,"column":382,"offset":476},"end":{"line":5,"column":392,"offset":486},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"xu-xun"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"li-yang","position":{"start":{"line":5,"column":394,"offset":488},"end":{"line":5,"column":405,"offset":499},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"li-yang"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"wang-yu","position":{"start":{"line":5,"column":407,"offset":501},"end":{"line":5,"column":418,"offset":512},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"wang-yu"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"fu-yuan","position":{"start":{"line":5,"column":420,"offset":514},"end":{"line":5,"column":431,"offset":525},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"fu-yuan"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"chang-yue","position":{"start":{"line":5,"column":433,"offset":527},"end":{"line":5,"column":446,"offset":540},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"chang-yue"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"huang-ziheng","position":{"start":{"line":5,"column":448,"offset":542},"end":{"line":5,"column":464,"offset":558},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"huang-ziheng"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"2019","position":{"start":{"line":6,"column":9,"offset":567},"end":{"line":6,"column":17,"offset":575},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2019"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"2022-03-29","position":{"start":{"line":7,"column":15,"offset":590},"end":{"line":7,"column":29,"offset":604},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-03-29"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"digital-botanical-garden","position":{"start":{"line":10,"column":11,"offset":711},"end":{"line":10,"column":39,"offset":739},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"digital-botanical-garden"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"tags.Genomic","alias":"#Genomic","position":{"start":{"line":11,"column":9,"offset":748},"end":{"line":11,"column":17,"offset":756},"indent":[]},"xvault":false,"to":{"fname":"tags.Genomic"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"tags.Imaging","alias":"#Imaging","position":{"start":{"line":11,"column":19,"offset":758},"end":{"line":11,"column":27,"offset":766},"indent":[]},"xvault":false,"to":{"fname":"tags.Imaging"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"tags.phylogeny","alias":"#phylogeny","position":{"start":{"line":11,"column":29,"offset":768},"end":{"line":11,"column":39,"offset":778},"indent":[]},"xvault":false,"to":{"fname":"tags.phylogeny"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"tags.ruili-botanical-garden","alias":"#ruili-botanical-garden","position":{"start":{"line":11,"column":41,"offset":780},"end":{"line":11,"column":64,"offset":803},"indent":[]},"xvault":false,"to":{"fname":"tags.ruili-botanical-garden"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"tags.vascular-plants","alias":"#vascular-plants","position":{"start":{"line":11,"column":66,"offset":805},"end":{"line":11,"column":82,"offset":821},"indent":[]},"xvault":false,"to":{"fname":"tags.vascular-plants"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"tags.voucher-specimens","alias":"#voucher-specimens","position":{"start":{"line":11,"column":84,"offset":823},"end":{"line":11,"column":102,"offset":841},"indent":[]},"xvault":false,"to":{"fname":"tags.voucher-specimens"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"tags.whole-genome-sequencing","alias":"#whole-genome-sequencing","position":{"start":{"line":11,"column":104,"offset":843},"end":{"line":11,"column":128,"offset":867},"indent":[]},"xvault":false,"to":{"fname":"tags.whole-genome-sequencing"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":11,"column":130,"offset":869},"end":{"line":11,"column":137,"offset":876},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":11,"column":139,"offset":878},"end":{"line":11,"column":156,"offset":895},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio.bo_2019","id":"wck5b60vibf6m2nm0zfit4i","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":11,"column":158,"offset":897},"end":{"line":11,"column":168,"offset":907},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}}],"anchors":{"genomic-and-imaging-data-supporting-the-digitization-of-ruili-botanical-garden":{"type":"header","text":"Genomic and Imaging Data Supporting the Digitization of Ruili Botanical Garden","value":"genomic-and-imaging-data-supporting-the-digitization-of-ruili-botanical-garden","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"abstract":{"type":"header","text":"Abstract","value":"abstract","line":20,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":25,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
Bo_2019
\n
Genomic and Imaging Data Supporting the Digitization of Ruili Botanical Garden
Genome sequencing has been widely used in plant research to construct reference genomes and elucidate evolutionary insights. However, only a limited number of plant species have had their whole genome sequenced, and the limited taxon information of these species has further restrained the utility of these data. Here, we comprehensively sampled and sequenced vascular plant species in and around Ruili Botanical Garden, located in South West China. We sequenced 761 samples out of the total 1,093 collected voucher specimens stored in the Herbarium of China National GeneBank (HCNGB). These 761 samples represented 689 vascular plant species from 137 families belonging to 49 orders. Of these, 257 samples were identified to the species level and 504 samples to the family level using specimens and chloroplast sequences. We generated 54 Tb sequencing data in total, which resulted in an average sequencing depth of 60× for these species, as estimated by the genome size. A reference phylogeny was reconstructed with 78 chloroplast genes for molecular identification and possible applications. In this study, we established a large dataset of vascular plants’ genomes, with both the high-depth whole genome sequencing data and the voucher specimens, making it valuable dataset for plant genome researches and applications. And providing insight into the feasibility and technical requirements for “planetary scale” projects such as the 10 thousand Plant Genome Project (10KP) and Earth BioGenome Project (EBP).
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/wgc5uzvwqoxzgfws17ihtpn.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/wgc5uzvwqoxzgfws17ihtpn.json
new file mode 100644
index 000000000000..95c25460800a
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/wgc5uzvwqoxzgfws17ihtpn.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.ebruelhart.2022.02","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345572,"created":1695629345572,"id":"wgc5uzvwqoxzgfws17ihtpn","desc":"","links":[],"anchors":{},"children":["4x838xaa0fzky9sy417xnnu","a015teif7qbiq5vaqnkvm7x","u6onqx095u4r2pji608uku0"],"parent":"vechu9nek0ai9pac4taotye","data":{},"title":"02"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/wgog1f2a62k1jkbw3pb2wh9.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/wgog1f2a62k1jkbw3pb2wh9.json
new file mode 100644
index 000000000000..7e8f71b0cb46
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/wgog1f2a62k1jkbw3pb2wh9.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"wgog1f2a62k1jkbw3pb2wh9","title":"2023-05-02","desc":"","updated":1683793354268,"created":1683007336509,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.05.02","type":"note","vault":{"fsPath":"vault"},"contentHash":"9e4b0bfad2cac63682a9453549f25ca1","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":36,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":39,"column":0,"depth":2}},"children":[],"parent":"kpf9zs71io037d9pc13w2ky","data":{}},"body":"
Error when connecting to db via node:\n' Error fetching molecules: Error: self signed certificate\nat TLSSocket.onConnectSecure (node:_tls_wrap:1532:34)\nat TLSSocket.emit (node:events:527:28)\nat TLSSocket._finishInit (node:_tls_wrap:946:8)\nat TLSWrap.ssl.onhandshakedone (node:_tls_wrap:727:12) {\ncode: 'DEPTH_ZERO_SELF_SIGNED_CERT'\n}'
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/wjbg6tl4gd7nqyegd8gmsrw.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/wjbg6tl4gd7nqyegd8gmsrw.json
new file mode 100644
index 000000000000..ddf5c4b7d115
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/wjbg6tl4gd7nqyegd8gmsrw.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"wjbg6tl4gd7nqyegd8gmsrw","title":"2022-12-31","desc":"","updated":1672500640146,"created":1672499747681,"traitIds":["open-notebook-pma"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2022.12.31","type":"note","vault":{"fsPath":"vault"},"contentHash":"2154808c8143158ff5030626289e4d1a","links":[{"type":"wiki","from":{"fname":"open-notebook.dbgi.pmallard.2022.12.31","id":"wjbg6tl4gd7nqyegd8gmsrw","vaultName":"vault"},"value":"fundings","position":{"start":{"line":27,"column":11,"offset":372},"end":{"line":27,"column":23,"offset":384},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"fundings"}}],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"":{"type":"header","text":"","value":"","line":16,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":17,"column":0,"depth":3},"-2":{"type":"header","text":"","value":"-2","line":18,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":20,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":22,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":24,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":26,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":51,"column":0,"depth":2},"-3":{"type":"header","text":"","value":"-3","line":53,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":54,"column":0,"depth":3},"-5":{"type":"header","text":"","value":"-5","line":55,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":58,"column":0,"depth":2}},"children":[],"parent":"s6ozn8k96p7yh3er2vf9q6l","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/wkcv9ptmrqgwqcnge34lwb5.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/wkcv9ptmrqgwqcnge34lwb5.json
new file mode 100644
index 000000000000..30d9e2486540
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/wkcv9ptmrqgwqcnge34lwb5.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"wkcv9ptmrqgwqcnge34lwb5","title":"2023-07-14","desc":"","updated":1689325616731,"created":1689325301049,"traitIds":["open-notebook-ebruelhart"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2023.07.14","type":"note","vault":{"fsPath":"vault"},"contentHash":"f11c7c6bcf234255d4f18e748a73f8d5","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":16,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":18,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":20,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":28,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":30,"column":0,"depth":1}},"children":[],"parent":"831ax1rnra2jqycbj2lcvgq","data":{}},"body":"
2023-07-14
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2023.07.14
\n
To do
\n
done
\n
Perspectives
\n
notes
\n
Discussion with Manu about QFIeld:
\n
\n
Create a free picture field to add some ponctual informations
\n
Add 2 tabs on QField, ecological metadata and environmental metadata
\n
Add herbivory in pourcent (constraint from 0 to 100)
\n
Shedule a meeting to discuss about that
\n
\n
code
\n
links
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/wli8olqef70t0l79fkxh113.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/wli8olqef70t0l79fkxh113.json
new file mode 100644
index 000000000000..ae484689af5c
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/wli8olqef70t0l79fkxh113.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"wli8olqef70t0l79fkxh113","title":"2023-04-05","desc":"","updated":1680690297215,"created":1680673761005,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.04.05","type":"note","vault":{"fsPath":"vault"},"contentHash":"c7dc1298c27d5360e53bd3966a3cacb5","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"slides-by-caterina":{"type":"header","text":"Slides by Caterina","value":"slides-by-caterina","line":68,"column":0,"depth":3},"application-case":{"type":"header","text":"Application case","value":"application-case","line":109,"column":0,"depth":3},"api":{"type":"header","text":"API","value":"api","line":116,"column":0,"depth":1},"forum":{"type":"header","text":"Forum","value":"forum","line":127,"column":0,"depth":2},"it-is-also-possible-to-export-an-openbis":{"type":"header","text":"It is also possible to export an OpenBis","value":"it-is-also-possible-to-export-an-openbis","line":134,"column":0,"depth":1},"paused":{"type":"header","text":"Paused","value":"paused","line":149,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":151,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":153,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":155,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":157,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":158,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":159,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":162,"column":0,"depth":2}},"children":[],"parent":"v0029honfl4v4m4tyoy8ul1","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/wmb1zpcibrhc5tds4234mpu.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/wmb1zpcibrhc5tds4234mpu.json
new file mode 100644
index 000000000000..6580fc2fe566
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/wmb1zpcibrhc5tds4234mpu.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"wmb1zpcibrhc5tds4234mpu","title":"2023-05-17","desc":"","updated":1684324879513,"created":1684324769382,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.05.17","type":"note","vault":{"fsPath":"vault"},"contentHash":"a9046e427d14fcf2014faec598f3391d","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":25,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":51,"column":0,"depth":2}},"children":[],"parent":"kpf9zs71io037d9pc13w2ky","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/wp6ovmq51f3ymg09xxtbcq3.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/wp6ovmq51f3ymg09xxtbcq3.json
new file mode 100644
index 000000000000..37f03d84783e
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/wp6ovmq51f3ymg09xxtbcq3.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"wp6ovmq51f3ymg09xxtbcq3","title":"2022-11-24","desc":"","updated":1669734530921,"created":1669274657700,"traitIds":["open-notebook-mw"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2022.11.24","type":"note","vault":{"fsPath":"vault"},"contentHash":"d20b182cd7968186d34d3e60e0274cca","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":15,"column":0,"depth":2},"if-everything-done-before-end-of-day":{"type":"header","text":"If everything done before end of day","value":"if-everything-done-before-end-of-day","line":19,"column":0,"depth":3},"meeting-with-pma":{"type":"header","text":"Meeting with pma","value":"meeting-with-pma","line":22,"column":0,"depth":2},"new-todo-after-meeting":{"type":"header","text":"new TODO after meeting","value":"new-todo-after-meeting","line":32,"column":0,"depth":3},"code":{"type":"header","text":"CODE","value":"code","line":37,"column":0,"depth":2},"show-images-from-url-on-directus":{"type":"header","text":"Show images from url on directus","value":"show-images-from-url-on-directus","line":39,"column":0,"depth":3},"dbgi_id-without-regex":{"type":"header","text":"dbgi_id without regex","value":"dbgi_id-without-regex","line":56,"column":0,"depth":3},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":75,"column":0,"depth":2}},"children":[],"parent":"2n9ssq0hbel5s1n7o4aiqhl","data":{}},"body":"
2022-11-24
\n
This is Maëlle's DBGI daily open-notebook.
\n
Today is 2022.11.24
\n
TODO
\n
\n
Meeting with pma at 10am
\n
Show images from url on directus
\n
\n
If everything done before end of day
\n
\n
go on with the tutorial
\n
\n
Meeting with pma
\n
To discuss:
\n
\n
\n
dot problem resolved
\n
\n
\n
Dbgi_id without regex on format module
\n
\n
\n
Block table on directus (=> when using another user)
\n
\n
\n
change dbgi_id => DBGI_000000
\n
\n
\n
Pswd in cronjob
\n
\n
\n
show images
\n
\n
\n
new TODO after meeting
\n
\n
dbgi_id without regex
\n
url on directus
\n
show images
\n
\n
CODE
\n
Show images from url on directus
\n
Could maybe create a script to convert \n=> install directus CLI
for i inrange(len(df)): \n dct =dict() \n if df.ofvs[i]isnot np.nan: \n ls = df.ofvs[i].replace(' ','').replace('\\'','') \n for j in ls.split(','): \n j = j.split(':') \n dct[j[0]]= j[1] \n if dct['name_ci']=='emi_external_id': \n print(dct['value_ci'], i) \n df.at[i,'dbgi_id']= dct['value_ci'] \n
\n
Works on jupyter notebook but not on format_module.py .... \nError: ls = df.ofvs[i].replace(' ','').replace('\\'','') AttributeError: 'list' object has no attribute 'replace'
\n
TODO NEXT
\n
\n
dbgi_id without regex
\n
url on directus
\n
show images
\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/wpvgtzcvxy5ctbwvlilieao.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/wpvgtzcvxy5ctbwvlilieao.json
new file mode 100644
index 000000000000..33120159ba7a
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/wpvgtzcvxy5ctbwvlilieao.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"wpvgtzcvxy5ctbwvlilieao","title":"2023-03-23","desc":"","updated":1679588853058,"created":1679560177365,"traitIds":["open-notebook-lschwegler"],"custom":{},"fname":"open-notebook.dbgi.lschwegler.2023.03.23","type":"note","vault":{"fsPath":"vault"},"contentHash":"26c647c12b828b50b2bc5a82c4c47aff","links":[],"anchors":{"this-is-lenditas-dbgi-daily-open-notebook":{"type":"header","text":"This is Lendita's DBGI daily open-notebook.","value":"this-is-lenditas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":23,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":25,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":27,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":49,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":51,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":52,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":53,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":56,"column":0,"depth":2}},"children":[],"parent":"fvmwxnhp9vq9cdbnjkn6slr","data":{}},"body":"
Frezze dryer, room 0.320 --> always book early at openiris.io (science-it.ch).\nTurn right\nTurn left to close\nSelect programme P1. There are 3 cycles of 24 h. We need 2 = 48 h.\nAttention: Check if the freezer hole is free of ice and clean it with household paper. It should be cleaned after use.\nThen we put a round plexiglass part on it. Large rounding towards the bottom and small rounding towards the top, then a yellow/green square on top and then the tube where the samples go in.\nMake sure that the closures are well closed (turn to the left) otherwise there will be no vacuum.\nBefore the start on Procycling and then after the start (wait approx. 2 min) and make sure that it is minus 70 and at 3 mbar.\nThe principle of the freeze dryer: Freeze drying is based on the physical process of sublimation: In this process, the ice crystals sublime directly into the gaseous state without the intermediate appearance of a liquid phase. The end product of freeze-drying is called lyophilisate.
\n
Important, after the dry freezer I have to replace the lids of the samples with those without holes.
\n
Today it was more pleasant than yesterday to collect the plant fragments. It was less hot. Everything went well so far.
\n
I was now able to book the freeze dryer for the following dates:
\n
\n
Wednesday, 29.03.23, 08:00 to Friday, 31.03.23, 10:30 a.m.
\n
Tuesday, 04.04.23, 16:00 to Friday, 07.04.23, 10:30
\n
Wednesday, 19.04.23, 08:00 to Friday, 21.04.23, 10:30 a.m.
\n
Tuesday, 02.05.23 until Friday, 05.05.23
\n
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/wwzjtgx2uhjbijqzagd3x3m.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/wwzjtgx2uhjbijqzagd3x3m.json
new file mode 100644
index 000000000000..26e7ff93b1e0
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/wwzjtgx2uhjbijqzagd3x3m.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.mwannier.2023.07","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345605,"created":1695629345605,"id":"wwzjtgx2uhjbijqzagd3x3m","desc":"","links":[],"anchors":{},"children":["toexcdqwxzo1lm7vur7sqce","7k73rajy7yof0hrvo43hgs3"],"parent":"hjgld8jupnd9k7kzqe0ubra","data":{},"title":"07"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/wxx1zeelnfzyzbhzi5yaax5.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/wxx1zeelnfzyzbhzi5yaax5.json
new file mode 100644
index 000000000000..95e4c555ddaa
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/wxx1zeelnfzyzbhzi5yaax5.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"wxx1zeelnfzyzbhzi5yaax5","title":"2023-05-30","desc":"","updated":1685446928652,"created":1685446887124,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.05.30","type":"note","vault":{"fsPath":"vault"},"contentHash":"4f5af792fcb7758a60b3f298ec44fea0","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":24,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":26,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":28,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":35,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":37,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":38,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":39,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":42,"column":0,"depth":2}},"children":[],"parent":"j2l2hsespzdiqm6qlppt5pc","data":{}},"body":"
As discussed and reminded by Donat.\nAsk all DBGI members to set their pictures licensing to CC0.
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/wynq1q71ia5acf9q2u68ktk.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/wynq1q71ia5acf9q2u68ktk.json
new file mode 100644
index 000000000000..6c13df8a76d4
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/wynq1q71ia5acf9q2u68ktk.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"wynq1q71ia5acf9q2u68ktk","title":"Pilot-Project","desc":"","updated":1677161541285,"created":1677161541285,"custom":{},"fname":"Bachelor-Work-2023.Methodology.Pilot-Project","type":"note","vault":{"fsPath":"vault"},"contentHash":"c9fb6d4586d054503760b14f4169b100","links":[],"anchors":{},"children":[],"parent":"n8f8u3ozin3et4pvtgt16h9","data":{}},"body":"
Pilot-Project
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/xa6skrpvssydifmgselxzgr.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/xa6skrpvssydifmgselxzgr.json
new file mode 100644
index 000000000000..ab916ae93845
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/xa6skrpvssydifmgselxzgr.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"xa6skrpvssydifmgselxzgr","title":"Notes","desc":"","updated":1679929681173,"created":1679639391153,"custom":{},"fname":"workshops.2023.03.28.program.notes","type":"note","vault":{"fsPath":"vault"},"contentHash":"e113b4b40d48b7a23ec1c17311af0ba5","links":[],"anchors":{},"children":[],"parent":"scwf8yap0lpao69iti1h1l7","data":{}},"body":"
Ana asked if WD sparql endpoint are aware of metadata (suchas creation dates etc)
\n
Metabolomics of Type Specimens\nOpenTraits networks
\n
MarDI Portal
\n
Portal:Toolforge
\n
Wikitech
\n
Aopen a Toolforge account
\n
grafana.wikimedia.org
\n
circos
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/xbm6thpignhvxup4oktamzo.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/xbm6thpignhvxup4oktamzo.json
new file mode 100644
index 000000000000..7de889dc57ef
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/xbm6thpignhvxup4oktamzo.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"xbm6thpignhvxup4oktamzo","title":"2023-09-22","desc":"","updated":1695385991020,"created":1695377033069,"traitIds":["open-notebook-ebruelhart"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2023.09.22","type":"note","vault":{"fsPath":"vault"},"contentHash":"d339b5526329147018487d47622fb857","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"what-to-discuss-with-pierre-marie":{"type":"header","text":"What to discuss with Pierre-Marie","value":"what-to-discuss-with-pierre-marie","line":14,"column":0,"depth":1}},"children":[],"parent":"mr13v0pgk22iz9u2st4tt1w","data":{}},"body":"
2023-09-22
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2023.09.22
\n
What to discuss with Pierre-Marie
\n
\n
What kind of informations for extractions: date and time, UUID,
\n
What kind of informations for injections
\n
Choose good vials racks
\n
Where to store extracts weight
\n
Codes for sample boxes, codes for extract boxes, codes for fridges, codes for fridges stages
\n
How to manage injection (directly fill the chromatography racks when prelevating extracts, add another mode in the application to scan the vials when putting them on the chromatography racks?, let manually gestion?)
\n
Specials databases for different racks? Do I have to create a special database for each type of racks or is it just a parameter to fill in a field next to the samples/extracts/injects?
\n
Same questio with fridges/fridges stages
\n
\n
label ependorf dbgi_000001_01_tmp
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/xdhb87regj4u4mns68567x3.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/xdhb87regj4u4mns68567x3.json
new file mode 100644
index 000000000000..15e5cf5194d4
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/xdhb87regj4u4mns68567x3.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"xdhb87regj4u4mns68567x3","title":"templates","desc":"","updated":1688886751288,"created":1688886728277,"custom":{},"fname":"BiCICKL-project.nanopublications.ressources.nanopublications.templates","type":"note","vault":{"fsPath":"vault"},"contentHash":"833f38f76a2360069a4e731f11b56609","links":[],"anchors":{},"children":[],"parent":"4znf32ksin5t4737lj6rbeg","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/xfo9r506ukemq0r2191kqkl.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/xfo9r506ukemq0r2191kqkl.json
new file mode 100644
index 000000000000..6ba3ae96fccb
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/xfo9r506ukemq0r2191kqkl.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"xfo9r506ukemq0r2191kqkl","title":"Postgres","desc":"","updated":1687525984355,"created":1666246320224,"custom":{},"fname":"database.tutorial.postgres","type":"note","vault":{"fsPath":"vault"},"contentHash":"f23c58c3588c652cbc1b4a9edc7af905","links":[{"from":{"fname":"database.tutorial.directus.Basics","id":"l5hk8footuy2893u4zi6yvs","vaultName":"vault"},"type":"backlink","position":{"start":{"line":29,"column":33,"offset":1706},"end":{"line":29,"column":86,"offset":1759},"indent":[]},"value":"database.tutorial.postgres"},{"from":{"fname":"database.tutorial.directus.Basics","id":"l5hk8footuy2893u4zi6yvs","vaultName":"vault"},"type":"backlink","position":{"start":{"line":30,"column":33,"offset":1792},"end":{"line":30,"column":93,"offset":1852},"indent":[]},"value":"database.tutorial.postgres"}],"anchors":{"connect-to-postgresql":{"type":"header","text":"Connect to postgresql","value":"connect-to-postgresql","line":8,"column":0,"depth":1},"database":{"type":"header","text":"DATABASE","value":"database","line":13,"column":0,"depth":1},"create-new-database":{"type":"header","text":"Create new database","value":"create-new-database","line":15,"column":0,"depth":2},"list-all-database":{"type":"header","text":"list all database","value":"list-all-database","line":20,"column":0,"depth":2},"connect-to-the-database":{"type":"header","text":"Connect to the database","value":"connect-to-the-database","line":25,"column":0,"depth":2},"table":{"type":"header","text":"TABLE","value":"table","line":30,"column":0,"depth":1},"create-a-new-table":{"type":"header","text":"Create a new table","value":"create-a-new-table","line":32,"column":0,"depth":2},"generate-table-layout-to-create-new-table-before-importing-csv-in-the-db":{"type":"header","text":"Generate table layout to create new table before importing csv in the db:","value":"generate-table-layout-to-create-new-table-before-importing-csv-in-the-db","line":44,"column":0,"depth":3},"list-tables-in-a-db":{"type":"header","text":"List tables in a db","value":"list-tables-in-a-db","line":52,"column":0,"depth":3},"describe-each-table":{"type":"header","text":"Describe each table","value":"describe-each-table","line":57,"column":0,"depth":3},"add-a-column":{"type":"header","text":"Add a column","value":"add-a-column","line":62,"column":0,"depth":2},"drop-a-table":{"type":"header","text":"Drop a table","value":"drop-a-table","line":68,"column":0,"depth":2},"insert-data-in-table":{"type":"header","text":"Insert data in table","value":"insert-data-in-table","line":73,"column":0,"depth":2},"manually":{"type":"header","text":"Manually","value":"manually","line":76,"column":0,"depth":3},"from-a-csv-file":{"type":"header","text":"From a csv file","value":"from-a-csv-file","line":86,"column":0,"depth":3},"update-data-in-table":{"type":"header","text":"Update data in table","value":"update-data-in-table","line":94,"column":0,"depth":2},"delete-data-from-table":{"type":"header","text":"Delete data from table","value":"delete-data-from-table","line":103,"column":0,"depth":2},"constraints":{"type":"header","text":"Constraints","value":"constraints","line":109,"column":0,"depth":2},"when-defining-the-table":{"type":"header","text":"When defining the table","value":"when-defining-the-table","line":111,"column":0,"depth":3},"after-creation":{"type":"header","text":"After creation","value":"after-creation","line":125,"column":0,"depth":3},"some-useful-clauses":{"type":"header","text":"Some useful clauses","value":"some-useful-clauses","line":138,"column":0,"depth":2},"select-statement":{"type":"header","text":"Select statement","value":"select-statement","line":139,"column":0,"depth":3},"where-clause":{"type":"header","text":"Where clause","value":"where-clause","line":148,"column":0,"depth":3},"sequence":{"type":"header","text":"SEQUENCE","value":"sequence","line":159,"column":0,"depth":1},"restart-the-sequence-padding":{"type":"header","text":"Restart the sequence padding","value":"restart-the-sequence-padding","line":160,"column":0,"depth":2},"to-go-further":{"type":"header","text":"To go further","value":"to-go-further","line":166,"column":0,"depth":1}},"children":[],"parent":"kc3mm3rc1fmmb3vzmjlh97r","data":{}},"body":"
Postgres
\n
Connect to postgresql
\n
psql -U username\n
\n
DATABASE
\n
Create new database
\n
CREATE DATABASE dbname;\n
\n
list all database
\n
\\l\n
\n
Connect to the database
\n
\\c database_name\n
\n
TABLE
\n
Create a new table
\n
CREATE TABLE table_name( \n column1 datatype, \n column2 datatype, \n column3 datatype, \n ..... \n columnN datatype, \n PRIMARY KEY( one or more columns ) \n );\n
\n
Generate table layout to create new table before importing csv in the db:
\n
In bash terminal:
\n
head -n 20 table.csv | csvsql --no-constraints --tables table_name\n
\n
This will give an sql command to crate the new table. The datatypes may have to be changed.
\n
List tables in a db
\n
\\d\n
\n
Describe each table
\n
\\d table_name\n
\n
Add a column
\n
ALTER TABLE table_name\nADD COLUMN new_column_name data_type constraint;\n
No need to specify the columns name if one is adding values for all the columns of the table. But the order of the values should be the same as the column.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/xgd4n4u4396dd3vtm8h4ukf.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/xgd4n4u4396dd3vtm8h4ukf.json
new file mode 100644
index 000000000000..e93da6e2ce9d
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/xgd4n4u4396dd3vtm8h4ukf.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"xgd4n4u4396dd3vtm8h4ukf","title":"2023-03-22","desc":"","updated":1679511407648,"created":1679476165619,"traitIds":["open-notebook-lschwegler"],"custom":{},"fname":"open-notebook.dbgi.lschwegler.2023.03.22","type":"note","vault":{"fsPath":"vault"},"contentHash":"2137ba49b71c04c89100681802878ea9","links":[],"anchors":{"this-is-lenditas-dbgi-daily-open-notebook":{"type":"header","text":"This is Lendita's DBGI daily open-notebook.","value":"this-is-lenditas-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":16,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":18,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":19,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":21,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":23,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":25,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":27,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":32,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":34,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":35,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":36,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":39,"column":0,"depth":2}},"children":[],"parent":"fvmwxnhp9vq9cdbnjkn6slr","data":{}},"body":"
After the Common group meeting we installed Edouard's new site for QField. & QGis.\nI went to the greenhouse today and collected some succulents. It's not to be underestimated or it's because of pregnancy that I found it physically demanding but it was fun too. There are indeed some pretty crazy succulents. Tomorrow it's on to collecting... and then also dry freezing....
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/xgjj1jp3zvveo2jv8wmft3a.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/xgjj1jp3zvveo2jv8wmft3a.json
new file mode 100644
index 000000000000..b4d3130f4760
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/xgjj1jp3zvveo2jv8wmft3a.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"xgjj1jp3zvveo2jv8wmft3a","title":"2023-04-13","desc":"","updated":1681383445942,"created":1681382192259,"traitIds":["open-notebook-ebruelhart"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2023.04.13","type":"note","vault":{"fsPath":"vault"},"contentHash":"c4717f2a9e5574e04547b1a0fab8b8aa","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":16,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":18,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":20,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":26,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":28,"column":0,"depth":1}},"children":[],"parent":"tdh4km6qoyitvdxue4dqxlp","data":{}},"body":"
2023-04-13
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2023.04.13
\n
To do
\n
done
\n
Perspectives
\n
notes
\n
I am trying to store the pictures on an external cloud storage. So that the QFieldcloud projects are only composed of maps and layers, and the pictures are stored in a different instance. But before the transfer, I want to change pictures coordinates so that they match the location of the added point. In addition, I want to do an automatic quality check, to compress pictures that exceeds the 20MB size, so that the iNaturalist import can be done.
\n
code
\n
links
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/xr4rp5wm35k7mzg99k2zpx3.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/xr4rp5wm35k7mzg99k2zpx3.json
new file mode 100644
index 000000000000..23f6c6df2ecc
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/xr4rp5wm35k7mzg99k2zpx3.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"xr4rp5wm35k7mzg99k2zpx3","title":"2022-10-23","desc":"","updated":1666554194868,"created":1666554183096,"traitIds":["journalNote"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2022.10.23","type":"note","vault":{"fsPath":"vault"},"contentHash":"188ebcbee1626f8b1da8d7cfec1b5599","links":[],"anchors":{"starting-the-day":{"type":"header","text":"Starting the day","value":"starting-the-day","line":11,"column":0,"depth":2},"todays-todo":{"type":"header","text":"Today's Todo","value":"todays-todo","line":15,"column":0,"depth":3},"today-notes--ideas":{"type":"header","text":"Today Notes & ideas","value":"today-notes--ideas","line":21,"column":0,"depth":3},"ending-the-day":{"type":"header","text":"Ending the day","value":"ending-the-day","line":26,"column":0,"depth":2},"future-todo":{"type":"header","text":"Future Todo","value":"future-todo","line":28,"column":0,"depth":3}},"children":[],"parent":"n8vkdmb1r45m3z6lqqrvd94","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/xrmkgb3quoc9wpj3rhthix3.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/xrmkgb3quoc9wpj3rhthix3.json
new file mode 100644
index 000000000000..fbf1257ce700
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/xrmkgb3quoc9wpj3rhthix3.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"xrmkgb3quoc9wpj3rhthix3","title":"Notes","desc":"","updated":1689277228943,"created":1688664923665,"custom":{},"fname":"workshops.2023.07.12.notes","type":"note","vault":{"fsPath":"vault"},"contentHash":"40e0874f11d5d606a466552477680965","links":[{"from":{"fname":"workshops.2023.07.12.program","id":"mr8692oaa717fbwx3sny852","vaultName":"vault"},"type":"backlink","position":{"start":{"line":51,"column":18,"offset":2505},"end":{"line":51,"column":48,"offset":2535},"indent":[]},"value":"workshops.2023.07.12.notes"}],"anchors":{"welcome-and-workshop-members-introduction-15-min":{"type":"header","text":"Welcome and workshop members’ introduction (15 min)","value":"welcome-and-workshop-members-introduction-15-min","line":21,"column":0,"depth":1},"review-ontology-engineering-activities-rest-of-the-morning":{"type":"header","text":"Review: ontology engineering activities (rest of the morning)","value":"review-ontology-engineering-activities-rest-of-the-morning","line":43,"column":0,"depth":1},"archived":{"type":"header","text":"Archived","value":"archived","line":100,"column":0,"depth":4}},"children":[],"parent":"5xi2kxvk62vfhpjcy6re666","data":{}},"body":"
Notes
\n
Kept below.\nNot much notes taken. Lot of chat !\nWe might want to have a different ratio next time.
Review: ontology engineering activities (rest of the morning)
\n
\n
\n
Organism taxonomy.
\n
\n
\n
Relying on WD as an aggregator of taxonomies.
\n
\n
\n
Marco : 2 problems. To have an identifier for a taxon (afterwards not sure why this is not adressed by WD) An identifier with clear release cycles (not so easily tracked at WD)\nThey are WD dumps.
\n
Luca: Keeping the mapping safe is N°1, 2 and 3 problem.\nNo consensus.
\n
BUT, in the meantime, in the DBGI-KG context we will use WD id.
\n
Manu : important to have solution for sampling of soils, water, honeys etc.\nMore generally we should create (or re-use if existing) a statement of this type \"macroscopic taxon is / apparently major biological organism of sample is\"\nThe biomeaggregation specimen type defined at http://cor.esipfed.org/ont?iri=https://w3id.org/isample/vocabulary/specimentype/0.9/biomeaggregation might be of inetrest.
\n
\n
Instantiation process.
\n
\n
Wd need to understand ways to map specimen <-> main define taxon (macroscopic taxon, possibly microscopic taxon)
Q: could the entity be a triple ?\nQ: could the entity be a more complex graph ?
\n
Luca suggests that we implement at one point quality control in the form of Continuous Integration checks.
\n
\n
CI on grammatical correctness of the terms used in the model.
\n
CI to log the granularity of the chemical annotations / biological taxonomy completion.\nThis would allow to understand how precisely we have defined a given spectral annotation and how precisely on organism was chracterized and this, at the full graph level.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/y4st25fb5m6zr3lymwti67f.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/y4st25fb5m6zr3lymwti67f.json
new file mode 100644
index 000000000000..73775e32d461
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/y4st25fb5m6zr3lymwti67f.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"y4st25fb5m6zr3lymwti67f","title":"10","desc":"","updated":1688891039665,"created":1688887071150,"custom":{},"fname":"BiCICKL-project.nanopublications.workshops.2023.07.10","type":"note","vault":{"fsPath":"vault"},"contentHash":"59976d9d9eaba85d9c68809e060423cc","links":[],"anchors":{},"children":["3h4j37hs4c67hha8mhajsrm","bo72d7rnxqqbuce3tgztgsx"],"parent":"loh62lxeuw5a5tjgvw09p51","data":{}},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/y7jopb2ea9jtgiljrorp7pl.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/y7jopb2ea9jtgiljrorp7pl.json
new file mode 100644
index 000000000000..68a0d2d2e8bc
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/y7jopb2ea9jtgiljrorp7pl.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"y7jopb2ea9jtgiljrorp7pl","title":"2023-02-07","desc":"","updated":1675842189504,"created":1675758958624,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.02.07","type":"note","vault":{"fsPath":"vault"},"contentHash":"cb2c39fca4761cd9d23677879b6597d3","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"meeting-with-pma":{"type":"header","text":"meeting with pma","value":"meeting-with-pma","line":15,"column":0,"depth":2},"todo":{"type":"header","text":"TODO","value":"todo","line":25,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":42,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":44,"column":0,"depth":2},"tmap":{"type":"header","text":"tmap","value":"tmap","line":46,"column":0,"depth":3},"molplotly":{"type":"header","text":"molplotly","value":"molplotly","line":51,"column":0,"depth":3},"vega":{"type":"header","text":"vega","value":"vega","line":56,"column":0,"depth":3},"datawarrior":{"type":"header","text":"datawarrior","value":"datawarrior","line":61,"column":0,"depth":3},"features-needed-for-the-vizualisation-project":{"type":"header","text":"Features needed for the vizualisation project","value":"features-needed-for-the-vizualisation-project","line":68,"column":0,"depth":3},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":76,"column":0,"depth":2}},"children":[],"parent":"3q0f349eurhhy0r6e1to0d2","data":{}},"body":"
2023-02-07
\n
This is Maëlle's DBGI daily open-notebook.
\n
Today is 2023.02.07
\n
meeting with pma
\n
Start of Master thesis!
\n
See open-notebook.pmallard.2023.02.07.md
\n
Regulations:\nMust do a formal written thesis (~30-40 pages) and an oral presentation
\n
TODO
\n
\n
\n
Read articles/look examples from open-notebook.pmallard.2023.02.07.md
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/ydpjn8upy8wgb2zux8oigq5.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/ydpjn8upy8wgb2zux8oigq5.json
new file mode 100644
index 000000000000..00e146826cf9
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/ydpjn8upy8wgb2zux8oigq5.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"ydpjn8upy8wgb2zux8oigq5","title":"Pan_2018","desc":"","updated":1656059639673,"created":1656059639673,"isDir":false,"custom":{"isDir":false},"fname":"biblio.pan_2018","type":"note","vault":{"fsPath":"vault"},"contentHash":"5eb8704eb216637919ed31c5ff21d46e","links":[{"type":"wiki","from":{"fname":"biblio.pan_2018","id":"ydpjn8upy8wgb2zux8oigq5","vaultName":"vault"},"value":"article","position":{"start":{"line":5,"column":14,"offset":285},"end":{"line":5,"column":25,"offset":296},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"article"}},{"type":"wiki","from":{"fname":"biblio.pan_2018","id":"ydpjn8upy8wgb2zux8oigq5","vaultName":"vault"},"value":"huiqin-pan","position":{"start":{"line":6,"column":12,"offset":308},"end":{"line":6,"column":26,"offset":322},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"huiqin-pan"}},{"type":"wiki","from":{"fname":"biblio.pan_2018","id":"ydpjn8upy8wgb2zux8oigq5","vaultName":"vault"},"value":"changliang-yao","position":{"start":{"line":6,"column":28,"offset":324},"end":{"line":6,"column":46,"offset":342},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"changliang-yao"}},{"type":"wiki","from":{"fname":"biblio.pan_2018","id":"ydpjn8upy8wgb2zux8oigq5","vaultName":"vault"},"value":"wenzhi-yang","position":{"start":{"line":6,"column":48,"offset":344},"end":{"line":6,"column":63,"offset":359},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"wenzhi-yang"}},{"type":"wiki","from":{"fname":"biblio.pan_2018","id":"ydpjn8upy8wgb2zux8oigq5","vaultName":"vault"},"value":"shuai-yao","position":{"start":{"line":6,"column":65,"offset":361},"end":{"line":6,"column":78,"offset":374},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"shuai-yao"}},{"type":"wiki","from":{"fname":"biblio.pan_2018","id":"ydpjn8upy8wgb2zux8oigq5","vaultName":"vault"},"value":"yong-huang","position":{"start":{"line":6,"column":80,"offset":376},"end":{"line":6,"column":94,"offset":390},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"yong-huang"}},{"type":"wiki","from":{"fname":"biblio.pan_2018","id":"ydpjn8upy8wgb2zux8oigq5","vaultName":"vault"},"value":"yibei-zhang","position":{"start":{"line":6,"column":96,"offset":392},"end":{"line":6,"column":111,"offset":407},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"yibei-zhang"}},{"type":"wiki","from":{"fname":"biblio.pan_2018","id":"ydpjn8upy8wgb2zux8oigq5","vaultName":"vault"},"value":"wanying-wu","position":{"start":{"line":6,"column":113,"offset":409},"end":{"line":6,"column":127,"offset":423},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"wanying-wu"}},{"type":"wiki","from":{"fname":"biblio.pan_2018","id":"ydpjn8upy8wgb2zux8oigq5","vaultName":"vault"},"value":"dean-guo","position":{"start":{"line":6,"column":129,"offset":425},"end":{"line":6,"column":141,"offset":437},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"dean-guo"}},{"type":"wiki","from":{"fname":"biblio.pan_2018","id":"ydpjn8upy8wgb2zux8oigq5","vaultName":"vault"},"value":"08.2018","position":{"start":{"line":7,"column":9,"offset":446},"end":{"line":7,"column":20,"offset":457},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"08.2018"}},{"type":"wiki","from":{"fname":"biblio.pan_2018","id":"ydpjn8upy8wgb2zux8oigq5","vaultName":"vault"},"value":"2022-03-01","position":{"start":{"line":8,"column":15,"offset":472},"end":{"line":8,"column":29,"offset":486},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-03-01"}},{"type":"wiki","from":{"fname":"biblio.pan_2018","id":"ydpjn8upy8wgb2zux8oigq5","vaultName":"vault"},"value":"extraction-method","position":{"start":{"line":12,"column":11,"offset":738},"end":{"line":12,"column":32,"offset":759},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"extraction-method"}},{"type":"wiki","from":{"fname":"biblio.pan_2018","id":"ydpjn8upy8wgb2zux8oigq5","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":13,"column":3,"offset":762},"end":{"line":13,"column":10,"offset":769},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio.pan_2018","id":"ydpjn8upy8wgb2zux8oigq5","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":13,"column":12,"offset":771},"end":{"line":13,"column":29,"offset":788},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio.pan_2018","id":"ydpjn8upy8wgb2zux8oigq5","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":13,"column":31,"offset":790},"end":{"line":13,"column":41,"offset":800},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}}],"anchors":{"an-enhanced-strategy-integrating-offline-two-dimensional-separation-and-step-wise-precursor-ion-list-based-raster-mass-defect-filter-characterization-of-indole-alkaloids-in-five-botanical-origins-of-uncariae-ramulus-cum-unicis-as-an-exemplary-application":{"type":"header","text":"An enhanced strategy integrating offline two-dimensional separation and step-wise precursor ion list-based raster-mass defect filter: Characterization of indole alkaloids in five botanical origins of Uncariae Ramulus Cum Unicis as an exemplary application","value":"an-enhanced-strategy-integrating-offline-two-dimensional-separation-and-step-wise-precursor-ion-list-based-raster-mass-defect-filter-characterization-of-indole-alkaloids-in-five-botanical-origins-of-uncariae-ramulus-cum-unicis-as-an-exemplary-application","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":25,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
Pan_2018
\n
An enhanced strategy integrating offline two-dimensional separation and step-wise precursor ion list-based raster-mass defect filter: Characterization of indole alkaloids in five botanical origins of Uncariae Ramulus Cum Unicis as an exemplary application
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/ye72xhbjnpnssvsue3nq9b9.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/ye72xhbjnpnssvsue3nq9b9.json
new file mode 100644
index 000000000000..23bbe0bfd346
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/ye72xhbjnpnssvsue3nq9b9.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"ye72xhbjnpnssvsue3nq9b9","title":"2022-04-07","desc":"","updated":1655027552112,"created":1649317360653,"traitIds":["journalNote"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2022.04.07","type":"note","vault":{"fsPath":"vault"},"contentHash":"66e83914a070d672e386027369c9a107","links":[],"anchors":{"starting-the-day":{"type":"header","text":"Starting the day","value":"starting-the-day","line":12,"column":0,"depth":2},"todays-todo":{"type":"header","text":"Today's Todo","value":"todays-todo","line":16,"column":0,"depth":3},"today-notes--ideas":{"type":"header","text":"Today Notes & ideas","value":"today-notes--ideas","line":22,"column":0,"depth":3},"ending-the-day":{"type":"header","text":"Ending the day","value":"ending-the-day","line":29,"column":0,"depth":2},"future-todo":{"type":"header","text":"Future Todo","value":"future-todo","line":31,"column":0,"depth":3}},"children":[],"parent":"gayd6f5rjdzpelcl7due270","data":{}},"body":"
See with the botanical garden collaborators when we can make the cartography of the botanical garden.
\n
Rework the mothodology
\n
Select the plants in the tropical greenhouse
\n
\n
Today Notes & ideas
\n
The DGPS and the drone are available, we just still have to see with the botanical garden collaborators to see when we can do the mesurements.
\n
For the lyophilisation, a night in the freezer at -80°C is ok and seems to work. The jar has been put in water ice during the transport to prevent melting before the transfer in the lyophilisator. one and a half hour later, it's still frozen without water in the bottom, what we didn't have with the liquid nitrogen directly.
\n
Ending the day
\n
Future Todo
\n
\n\n\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/yhy9x9k5bc082v5f87abgnv.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/yhy9x9k5bc082v5f87abgnv.json
new file mode 100644
index 000000000000..2baa8a7c3286
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/yhy9x9k5bc082v5f87abgnv.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"yhy9x9k5bc082v5f87abgnv","title":"Inaturalist","desc":"","updated":1657174463042,"created":1657174218999,"custom":{},"fname":"inaturalist","type":"note","vault":{"fsPath":"vault"},"contentHash":"392fc3709e5daf038798d247581bb3d1","links":[{"type":"wiki","from":{"fname":"inaturalist","id":"yhy9x9k5bc082v5f87abgnv","vaultName":"vault"},"value":"Bachelor-Work-2022.methodology.inaturalist","position":{"start":{"line":4,"column":5,"offset":106},"end":{"line":4,"column":54,"offset":155},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"Bachelor-Work-2022.methodology.inaturalist"}},{"from":{"fname":"biblio._f","id":"aalkz4u5xmrhcr781vlxge3","vaultName":"vault"},"type":"backlink","position":{"start":{"line":9,"column":11,"offset":236},"end":{"line":9,"column":26,"offset":251},"indent":[]},"value":"inaturalist"}],"anchors":{},"children":[],"parent":"txkHnVTI9AawnquiublXO","data":{}},"body":"
Inaturalist
\n
We use iNaturalist to track the selected specimens in the DBGI.
\n
See iNaturalist for some details worked on during Edouard's bachelor.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/yp5i3ny1ae3g1qdg81pazkt.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/yp5i3ny1ae3g1qdg81pazkt.json
new file mode 100644
index 000000000000..5c9f083283e6
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/yp5i3ny1ae3g1qdg81pazkt.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"yp5i3ny1ae3g1qdg81pazkt","title":"2023-07-11","desc":"","updated":1689091209732,"created":1689066606175,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.07.11","type":"note","vault":{"fsPath":"vault"},"contentHash":"3e4804cde87e8476ce481013149febc3","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":39,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":41,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":43,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":45,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":47,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":48,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":49,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":52,"column":0,"depth":2}},"children":[],"parent":"vvcscq2gtvhdsmtmbqfqjqb","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/yry7powqqihky4hph5k0yrd.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/yry7powqqihky4hph5k0yrd.json
new file mode 100644
index 000000000000..57f7677873e8
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/yry7powqqihky4hph5k0yrd.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"yry7powqqihky4hph5k0yrd","title":"2023-05-15","desc":"","updated":1684104496286,"created":1684103004870,"traitIds":["open-notebook-ebruelhart"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2023.05.15","type":"note","vault":{"fsPath":"vault"},"contentHash":"d2486ecc3eb82c47f400c3425487934b","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":16,"column":0,"depth":1},"topics-we-have-to-discuss":{"type":"header","text":"Topics we have to discuss","value":"topics-we-have-to-discuss","line":18,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":26,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":36,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":38,"column":0,"depth":1}},"children":[],"parent":"2cv0y9hikhbt1jjla689ern","data":{}},"body":"
2023-05-15
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2023.05.15
\n
To do
\n
done
\n
Topics we have to discuss
\n
\n
How to distinguish wild from cultivated/captive specimens? -> possibility to add this information on the layer name (via the QGIS plugin). So that we can renseign if the layer contains wild or cultivated plants. It is a minimal error way to do it, since whole projects could contain cultivated and wild specimens.
\n
As clic bot is risky, I created a new account to upload the observations, in case of problems with inat. So that if the account is banned, we don't loose the older plants that were performed manually. But I think that an impersonal account (with dbgi mail for example) could be better.
\n
The upload of one observation takes approximatively 45 seconds to be performed by the bot. So until approx. 300 observations a day it's totally viable (3 hours and 45 minutes), but more than that will need another bot (not really a problem since we can run another bot with another inat account)
\n
When and how many times a week do I have to run the code?
\n
\n
notes
\n
The clic bot for inat is fast ready (It's working on my personal computer, I only need to adapt it to my server settings). I tested multiple configurations, and all seems to work well. I'll make some tests with the real data soon.
\n
To secure the thing, I'll make things as follow:\nAs the ina import is made with a clic bot, it's not secure. So I'll generate a folder with a copy of the pictures, sorted in folders with the dbgi code. So that each observation has it's own folder. Like that, it's much easier to upload them on inat. And once the observation is submitted, the folder will be deleted. So if the bot is no more working, we will see an accumulation of folders.
\n
On the other side, I'll create another folder with the \"original\" pictures. This one will be shared on Nextcloud. As an API is much more secure, I'll use this import to secure the pictures removing on the qfieldcloud server.
\n
code
\n
links
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/yyje0yaladfnf5qwpt9vx9d.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/yyje0yaladfnf5qwpt9vx9d.json
new file mode 100644
index 000000000000..ac0944e0d62a
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/yyje0yaladfnf5qwpt9vx9d.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"yyje0yaladfnf5qwpt9vx9d","title":"Organization","desc":"","updated":1671723744481,"created":1671723744481,"custom":{},"fname":"knowledge.organization","type":"note","vault":{"fsPath":"vault"},"contentHash":"befceac8b82ade70ced5071e02e82e5d","links":[],"anchors":{},"children":[],"parent":"eh30zgccb8kw1z36jlstijv","data":{}},"body":"
Organization
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/yz1zk8cjefojb9xnq68244t.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/yz1zk8cjefojb9xnq68244t.json
new file mode 100644
index 000000000000..5b41c048d569
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/yz1zk8cjefojb9xnq68244t.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"yz1zk8cjefojb9xnq68244t","title":"2023-04-17","desc":"","updated":1681742588681,"created":1681724607745,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.04.17","type":"note","vault":{"fsPath":"vault"},"contentHash":"1a250965a9c70b717cd79b4a83ec61bc","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":32,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":36,"column":0,"depth":2}},"children":[],"parent":"n0racr7o73zkdsyfvpomj9y","data":{}},"body":"
Problem with JSME object: can't found a way to export the SMILE value.\nTried different ways but seems like I have to use a JS script to get the data and then pass it to python.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/z0m7r6j4sp21v0fnoxdydmy.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/z0m7r6j4sp21v0fnoxdydmy.json
new file mode 100644
index 000000000000..97227ecf0da6
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/z0m7r6j4sp21v0fnoxdydmy.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"z0m7r6j4sp21v0fnoxdydmy","title":"25","desc":"","updated":1690298219416,"created":1690287807203,"traitIds":["meetingNote"],"custom":{},"fname":"meet.2023.07.25","type":"note","vault":{"fsPath":"vault"},"contentHash":"8ff1dd0c24926284da7fb65de6ff0555","links":[{"type":"wiki","from":{"fname":"meet.2023.07.25","id":"z0m7r6j4sp21v0fnoxdydmy","vaultName":"vault"},"value":"templates.meet","position":{"start":{"line":1,"column":11,"offset":10},"end":{"line":1,"column":29,"offset":28},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"templates.meet"}},{"type":"wiki","from":{"fname":"meet.2023.07.25","id":"z0m7r6j4sp21v0fnoxdydmy","vaultName":"vault"},"value":"user.john-doe","alias":"@john-doe","position":{"start":{"line":7,"column":3,"offset":248},"end":{"line":7,"column":12,"offset":257},"indent":[]},"xvault":false,"to":{"fname":"user.john-doe"}},{"type":"wiki","from":{"fname":"meet.2023.07.25","id":"z0m7r6j4sp21v0fnoxdydmy","vaultName":"vault"},"value":"open-notebook.dbgi.lcappelletti.2023.07.25","position":{"start":{"line":16,"column":31,"offset":354},"end":{"line":16,"column":77,"offset":400},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook.dbgi.lcappelletti.2023.07.25"}},{"from":{"fname":"open-notebook.dbgi.pmallard.2023.07.25","id":"n6ebzlvhe56zvmm935zl068","vaultName":"vault"},"type":"backlink","position":{"start":{"line":20,"column":1,"offset":319},"end":{"line":20,"column":20,"offset":338},"indent":[]},"value":"meet.2023.07.25"}],"anchors":{"attendees":{"type":"header","text":"Attendees","value":"attendees","line":11,"column":0,"depth":2},"goals":{"type":"header","text":"Goals","value":"goals","line":20,"column":0,"depth":2},"agenda":{"type":"header","text":"Agenda","value":"agenda","line":51,"column":0,"depth":2},"minutes":{"type":"header","text":"Minutes","value":"minutes","line":55,"column":0,"depth":2},"action-items":{"type":"header","text":"Action Items","value":"action-items","line":59,"column":0,"depth":2}},"children":[],"parent":"mdvxyh9b9lv59at04h9g39k","data":{},"schema":{"schemaId":"nsro3rhvudu8q39io3w6kao","moduleId":"meet"}},"body":"
25
\n
Edit the templates.meet (Private) note to change this template generated for Dendron Meeting Notes.
Write a command that runs for the test data made available on Zenodo that can be later adapted to be a test suite.
\n
\n
\n
\n
We used the downloaders lib https://pypi.org/project/downloaders/\nShould we automate the peak-picking on the long term ? Some issues here ... the GUI is pretty usefull for quality control.
\n
To be checked later on.
\n
Are they complete iNat dumps ?
\n
* Clarify what are the functionalities requested from the following dependencies:\n * [opentree](https://github.com/OpenTreeOfLife/python-opentree)\n * [pandas json_normalize](https://pandas.pydata.org/docs/reference/api/pandas.json_normalize.html)\n * sqlite3\n * [rdkit](https://github.com/rdkit/rdkit)\n * [chembl_webresource_client](https://github.com/chembl/chembl_webresource_client)\n * what is npscorer?\n * [matchms](https://github.com/matchms/matchms)\n * [canopus](https://github.com/kaibioinfo/canopus_treemap)\n * Why is NetworkX being used for connected components?\n* Start to define a reasonable time line for pipeline refactoring\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/z1zl1fl62r0zie9azb8ejhm.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/z1zl1fl62r0zie9azb8ejhm.json
new file mode 100644
index 000000000000..e70bdb23526e
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/z1zl1fl62r0zie9azb8ejhm.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"z1zl1fl62r0zie9azb8ejhm","title":"Biblio","desc":"","updated":1655573491367,"created":1648644248764,"stub":true,"custom":{"stub":true},"fname":"biblio","type":"note","vault":{"fsPath":"vault"},"contentHash":"9a7749fb51e2edaba8f1f29f333a5b3b","links":[],"anchors":{},"children":["f9esq7kcpahtr3x5jgvl9gk","h0tefctxts86anr2vsfp89x","jt9t67bhkzob768o2zk1b52","4os5xpu0v6cgd0p5mt4ie07","ztlzk5dmtvco58whz3logbq","zt8wdp67jys2sl9ks4z0eqv","aalkz4u5xmrhcr781vlxge3","lmex82qnbgssu3apk4t7v5f","k2s5qmelth38zu4oh7cwqtp","wck5b60vibf6m2nm0zfit4i","jz4rehjqyefpaaer58w9r6t","zbtrye1w4lzye45s8qf8vgw","r21vjrdpd8liy5fs5kavga8","spny4h5dev07610tk12j6mn","ibbfp49fyt6z7fe464e8w0d","vu5qkz5lrwslqa9oh2yq0de","db5di3a586il5e4c0t7bwsf","dcb8mbaa09zrwjcg4vrj98q","uspjcm0281qp5i2z8jfuakw","2c9rzly7t0hp97skojpcusv","7xu7tswjwm8la8iut99jxs9","h9iaihwud95x0ujp3nxegbm","ydpjn8upy8wgb2zux8oigq5","qrl6zp4ceeyaofhuw0pwv46","uonxd6a91s8ucjllv1aqx5k","1fvjvyoe6havg79ke34b07n","ji4eoxcoevr7u5beshcylgp","nps3scza4bu7zdnkuz9kxbz"],"parent":"txkHnVTI9AawnquiublXO","data":{}},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/z38tri6wkk7srwczdzxqcrg.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/z38tri6wkk7srwczdzxqcrg.json
new file mode 100644
index 000000000000..9cfd32e96894
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/z38tri6wkk7srwczdzxqcrg.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"z38tri6wkk7srwczdzxqcrg","title":"2023-04-13","desc":"","updated":1681395079507,"created":1681375773589,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.04.13","type":"note","vault":{"fsPath":"vault"},"contentHash":"e62d86b868109f322ea0e3c863b58478","links":[],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":21,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":24,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":25,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":27,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":29,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":31,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":53,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":59,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":61,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":62,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":63,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":66,"column":0,"depth":2}},"children":[],"parent":"kc7cc1lgen7049um6b9vb1q","data":{}},"body":"
2023-04-13
\n
This is Audrey's DBGI daily open-notebook.
\n
Today is 2023.04.13
\n
Todo today
\n
\n
Meeting group (presentation of the 1st year thesis)
\n
Check the localisation of the plant in the Botanical Garden
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/z5vxmoa2qvyo2bn1nq4jo41.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/z5vxmoa2qvyo2bn1nq4jo41.json
new file mode 100644
index 000000000000..852e6112590d
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/z5vxmoa2qvyo2bn1nq4jo41.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"z5vxmoa2qvyo2bn1nq4jo41","title":"2023-07-27","desc":"","updated":1690462981005,"created":1690462981005,"traitIds":["open-notebook-commons-pmallard"],"custom":{},"fname":"open-notebook.commons.pmallard.2023.07.27","type":"note","vault":{"fsPath":"vault"},"contentHash":"bbb0c5a77f54b70ccafcbd0f28b3c086","links":[{"type":"wiki","from":{"fname":"open-notebook.commons.pmallard.2023.07.27","id":"z5vxmoa2qvyo2bn1nq4jo41","vaultName":"vault"},"value":"viewpoint","position":{"start":{"line":13,"column":5,"offset":285},"end":{"line":13,"column":18,"offset":298},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"viewpoint"}}],"anchors":{"this-is-pmass-commons-lab-daily-open-notebook":{"type":"header","text":"This is PMAS's COMMONS Lab daily Open Notebook.","value":"this-is-pmass-commons-lab-daily-open-notebook","line":10,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":14,"column":0,"depth":2},"have-a-look-at-the-commons-research-discussion-forum":{"type":"header","text":"Have a look at the COMMONS research discussion forum","value":"have-a-look-at-the-commons-research-discussion-forum","line":16,"column":0,"depth":3},"daily-work-on-the-open-science-for-natural-products-research-viewpoint":{"type":"header","text":"Daily work on the Open Science for natural products research Viewpoint","value":"daily-work-on-the-open-science-for-natural-products-research-viewpoint","line":19,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":24,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":25,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":27,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":29,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":31,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":33,"column":0,"depth":2},"todo-tomorrow-one-day--or-never":{"type":"header","text":"Todo tomorrow, one day ... or never","value":"todo-tomorrow-one-day--or-never","line":35,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":38,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":39,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":42,"column":0,"depth":2}},"children":[],"parent":"u7s9s8a1tay4or5xhz14ohn","data":{}},"body":"
2023-07-27
\n
This is PMAS's COMMONS Lab daily Open Notebook.
\n
Today is 2023.07.27
\n
Todo today
\n
Have a look at the COMMONS research discussion forum
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/z8mejrh3ikjqdkd8xfaqle6.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/z8mejrh3ikjqdkd8xfaqle6.json
new file mode 100644
index 000000000000..9b41c7524c24
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/z8mejrh3ikjqdkd8xfaqle6.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"z8mejrh3ikjqdkd8xfaqle6","title":"2023-04-24","desc":"","updated":1682494911418,"created":1682346601384,"traitIds":["open-notebook-mwannier"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2023.04.24","type":"note","vault":{"fsPath":"vault"},"contentHash":"383b865d294010446dc4535ea30207e8","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"code":{"type":"header","text":"CODE","value":"code","line":21,"column":0,"depth":2},"notes":{"type":"header","text":"NOTES","value":"notes","line":23,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":32,"column":0,"depth":2},"important-for-redaction":{"type":"header","text":"Important for redaction","value":"important-for-redaction","line":36,"column":0,"depth":2}},"children":[],"parent":"n0racr7o73zkdsyfvpomj9y","data":{}},"body":"
Tried to do a plot to visualize molecular diversity\nA t-SNE (t-Distributed Stochastic Neighbor Embedding) or UMAP (Uniform Manifold Approximation and Projection) plot could be useful for this purpose. Both are dimensionality reduction techniques that can help visualize high-dimensional data in 2D or 3D. You can use these techniques to visualize the similarity between molecules based on their features.
\n
First needed to convert your molecular data into numerical features => As it is computationaly demanding, I created a script ('smiles_to_ecfp.py') that is running outside the app (maybe once everyday?) and that add the values to a table ('umap') in the 'lotus' postgresql database. \nWas trying to use umap at first but it was too memory consuming so I switched to t-SNE. It gives me a result that can be ploted but it is still computationally demanding and I should find another way or adapt this technique to visualize the diversity faster.
\n
TODO NEXT
\n
Important for redaction
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/za219ohh6orf6x1y7fvrkxh.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/za219ohh6orf6x1y7fvrkxh.json
new file mode 100644
index 000000000000..e0bb7550ed15
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/za219ohh6orf6x1y7fvrkxh.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"za219ohh6orf6x1y7fvrkxh","title":"2023-03-14","desc":"","updated":1678808234606,"created":1678808215319,"traitIds":["open-notebook-dbgi-pmallard"],"custom":{},"fname":"open-notebook.dbgi.pmallard.2023.03.14","type":"note","vault":{"fsPath":"vault"},"contentHash":"c5495a0efc095b45a475667515f92d23","links":[],"anchors":{"this-is-pmas-dbgi-daily-open-notebook":{"type":"header","text":"This is PMA's DBGI daily open-notebook.","value":"this-is-pmas-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":19,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":20,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":22,"column":0,"depth":2},"paused":{"type":"header","text":"Paused","value":"paused","line":24,"column":0,"depth":2},"done":{"type":"header","text":"Done","value":"done","line":26,"column":0,"depth":2},"notes":{"type":"header","text":"Notes","value":"notes","line":28,"column":0,"depth":2},"openbis-workshop":{"type":"header","text":"openBIS workshop","value":"openbis-workshop","line":30,"column":0,"depth":3},"notes-1":{"type":"header","text":"Notes","value":"notes-1","line":32,"column":0,"depth":4},"trainings":{"type":"header","text":"Trainings","value":"trainings","line":56,"column":0,"depth":3},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":64,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":66,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":67,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":68,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":71,"column":0,"depth":2}},"children":[],"parent":"20mx26zgvnr7cc5nucidveu","data":{}},"body":"
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/zbtrye1w4lzye45s8qf8vgw.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/zbtrye1w4lzye45s8qf8vgw.json
new file mode 100644
index 000000000000..fe3bd94398fa
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/zbtrye1w4lzye45s8qf8vgw.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"zbtrye1w4lzye45s8qf8vgw","title":"Br00ksm3t4l_a","desc":"","updated":1656059639673,"created":1656059639673,"isDir":false,"custom":{"isDir":false},"fname":"biblio.br00ksm3t4l_a","type":"note","vault":{"fsPath":"vault"},"contentHash":"f5e36749f87ab08cb77c962e073fb6fa","links":[{"type":"wiki","from":{"fname":"biblio.br00ksm3t4l_a","id":"zbtrye1w4lzye45s8qf8vgw","vaultName":"vault"},"value":"webpage","position":{"start":{"line":5,"column":14,"offset":60},"end":{"line":5,"column":25,"offset":71},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"webpage"}},{"type":"wiki","from":{"fname":"biblio.br00ksm3t4l_a","id":"zbtrye1w4lzye45s8qf8vgw","vaultName":"vault"},"value":"br00ksm3t4l","position":{"start":{"line":6,"column":12,"offset":83},"end":{"line":6,"column":27,"offset":98},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"br00ksm3t4l"}},{"type":"wiki","from":{"fname":"biblio.br00ksm3t4l_a","id":"zbtrye1w4lzye45s8qf8vgw","vaultName":"vault"},"value":"2022-03-31","position":{"start":{"line":7,"column":15,"offset":113},"end":{"line":7,"column":29,"offset":127},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-03-31"}},{"type":"wiki","from":{"fname":"biblio.br00ksm3t4l_a","id":"zbtrye1w4lzye45s8qf8vgw","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":10,"column":3,"offset":290},"end":{"line":10,"column":10,"offset":297},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio.br00ksm3t4l_a","id":"zbtrye1w4lzye45s8qf8vgw","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":10,"column":12,"offset":299},"end":{"line":10,"column":29,"offset":316},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio.br00ksm3t4l_a","id":"zbtrye1w4lzye45s8qf8vgw","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":10,"column":31,"offset":318},"end":{"line":10,"column":41,"offset":328},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}}],"anchors":{"sub-centimeter-gps-with-rtklib":{"type":"header","text":"Sub Centimeter GPS With RTKLIB","value":"sub-centimeter-gps-with-rtklib","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"abstract":{"type":"header","text":"Abstract","value":"abstract","line":19,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":24,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
Sub Centimeter GPS With RTKLIB: I recently had the need for a very accurate and precise positioning system, but had a hard time finding one. So I figured I'd share my discovery here so everyone will know centimeter or decimeter accuracy is easily within reach.I plan to use this wi…
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/zf5npe5w0sve2isc1q9s8gc.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/zf5npe5w0sve2isc1q9s8gc.json
new file mode 100644
index 000000000000..bdea0b6e0775
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/zf5npe5w0sve2isc1q9s8gc.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"zf5npe5w0sve2isc1q9s8gc","title":"Varia","desc":"","updated":1677089668401,"created":1676137702713,"custom":{},"fname":"meetings.2023.02.22.program.notes.varia","type":"note","vault":{"fsPath":"vault"},"contentHash":"e9b081b2d4e8abc9e5696b8e87a61257","links":[{"from":{"fname":"meetings.2023.02.22.program","id":"33r62tekbrtckkfadan4kwj","vaultName":"vault"},"type":"backlink","position":{"start":{"line":96,"column":1,"offset":2852},"end":{"line":96,"column":45,"offset":2896},"indent":[]},"value":"meetings.2023.02.22.program.notes.varia"}],"anchors":{"litterature-information-collection":{"type":"header","text":"Litterature information collection","value":"litterature-information-collection","line":8,"column":0,"depth":2},"next-meeting-":{"type":"header","text":"Next meeting ?!","value":"next-meeting-","line":14,"column":0,"depth":2},"outcomes-and-future-tasks":{"type":"header","text":"Outcomes and future tasks","value":"outcomes-and-future-tasks","line":19,"column":0,"depth":2}},"children":[],"parent":"9676i362aou4xnjhjczonjx","data":{}},"body":"
We have set up 2 upcoming meetings (more targeted than today's)\nAnyone is welcome to join them. And also envisioned starting a small taskgroup.
\n
\n
one small working group on legal and ethics aspects of sample collection (Anne Laure in JBN) Daniel is interested in ethics aspects and will possibly participate.
\n
one workshop on opneBIS (Henry, Caterina)
\n
one wikibase workshop (Daniel) In CH end of March 29-30 possibly few days earlier maybe in person.
\n
\n
Last notes by Daniel. He is involved in Soil for Europe (intersect with DBGI)\nPhenOps phenotypic observation, citizen science observation Botanical Gardens and citizen gardens\nThey gather temp data.
\n
Found back previous email of Daniel on these projects
\n
\n
I am involved with the EU Project \"Soils for Europe\" https://cordis.europa.eu/project/id/101091115 that may be of interest to you,\nand I talked to two projects here in Germany that I think would be good to connect with in some way, e.g. in terms of their model beddings and citizen involvement:\n\"Pflanze KlimaSchutz\" https://www.pflanzeklimakultur.de/index.php/de/\n\"PhenObs\" https://www.idiv.de/en/phenobs.html\nBoth involve collaborations between botanical gardens, with the first focusing on citizen science and public engagement in four German cities (Jena, Halle, Leipzig, Berlin), while the latter is more international (including Davos, whose Fabian Reppel will give a talk here in about an hour - [1]).
\n
I also would like us to think about\nhttps://commons.wikimedia.org/wiki/Commons:Wiki_Loves_Plants\nand similar initiatives involving iNaturalist and Wikimedia.\nFor instance, I would like to explore infrared imaging to highlight thermogenic plants.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/zktipm9otdm0nbk4wdcjtls.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/zktipm9otdm0nbk4wdcjtls.json
new file mode 100644
index 000000000000..ed3f29990d27
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/zktipm9otdm0nbk4wdcjtls.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"zktipm9otdm0nbk4wdcjtls","title":"2023-05-22","desc":"","updated":1685525121934,"created":1684755805152,"traitIds":["open-notebook-dbgi-alecabec"],"custom":{},"fname":"open-notebook.dbgi.alecabec.2023.05.22","type":"note","vault":{"fsPath":"vault"},"contentHash":"c829b577c9d6f1f230cbef30c5dfc064","links":[],"anchors":{"this-is-audreys-dbgi-daily-open-notebook":{"type":"header","text":"This is Audrey's DBGI daily open-notebook.","value":"this-is-audreys-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo-today":{"type":"header","text":"Todo today","value":"todo-today","line":15,"column":0,"depth":2},"have-a-look-at-the-dbgi-discussion-forum":{"type":"header","text":"Have a look at the DBGI discussion forum","value":"have-a-look-at-the-dbgi-discussion-forum","line":17,"column":0,"depth":3},"":{"type":"header","text":"","value":"","line":20,"column":0,"depth":3},"-1":{"type":"header","text":"","value":"-1","line":21,"column":0,"depth":3},"doing":{"type":"header","text":"Doing","value":"doing","line":23,"column":0,"depth":2},"datatreatment-project-28":{"type":"header","text":"datatreatment project 28","value":"datatreatment-project-28","line":24,"column":0,"depth":3},"done":{"type":"header","text":"Done","value":"done","line":51,"column":0,"depth":2},"ornamental-project":{"type":"header","text":"Ornamental project","value":"ornamental-project","line":52,"column":0,"depth":3},"notes":{"type":"header","text":"Notes","value":"notes","line":58,"column":0,"depth":2},"todo-tomorrow":{"type":"header","text":"Todo tomorrow","value":"todo-tomorrow","line":66,"column":0,"depth":2},"-2":{"type":"header","text":"","value":"-2","line":68,"column":0,"depth":3},"-3":{"type":"header","text":"","value":"-3","line":69,"column":0,"depth":3},"-4":{"type":"header","text":"","value":"-4","line":70,"column":0,"depth":3},"today-i-learned-that":{"type":"header","text":"Today I learned that","value":"today-i-learned-that","line":73,"column":0,"depth":2}},"children":[],"parent":"tvdn3jw4nqebyf7hozvvddb","data":{}},"body":"
==> feature list with less than 160 features (trop restrictif)
\n
Done
\n
Ornamental project
\n
\n
Preparation of the sample for analysis (Grinding, extraction, labelisation of the 38 samples of clematis, lonicera & euonymus) ; blank is the solvant extraction which followed the same step than sample (extraction with 3 beads in eppendorf)
\n
\n
labellisation : DBGI_xxxxxx_01 refer to stock vial (conserved in the freezer)
\n
Notes
\n
Todo tomorrow
\n
\n
\n
\n
Today I learned that
\n
\n\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/zmxxhzyjnkoz3urerxjpo2i.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/zmxxhzyjnkoz3urerxjpo2i.json
new file mode 100644
index 000000000000..85f440689e40
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/zmxxhzyjnkoz3urerxjpo2i.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"zmxxhzyjnkoz3urerxjpo2i","title":"2022-12-01","desc":"","updated":1669987371501,"created":1669879843072,"traitIds":["open-notebook-mw"],"custom":{},"fname":"open-notebook.dbgi.mwannier.2022.12.01","type":"note","vault":{"fsPath":"vault"},"contentHash":"7448da4428b79d36450b560fd59d5a02","links":[],"anchors":{"this-is-maëlles-dbgi-daily-open-notebook":{"type":"header","text":"This is Maëlle's DBGI daily open-notebook.","value":"this-is-maëlles-dbgi-daily-open-notebook","line":11,"column":0,"depth":1},"todo":{"type":"header","text":"TODO","value":"todo","line":16,"column":0,"depth":2},"if-everything-done-before-end-of-day":{"type":"header","text":"If everything done before end of day","value":"if-everything-done-before-end-of-day","line":22,"column":0,"depth":3},"code":{"type":"header","text":"CODE","value":"code","line":25,"column":0,"depth":2},"url-on-directus":{"type":"header","text":"url on directus","value":"url-on-directus","line":27,"column":0,"depth":3},"display-images":{"type":"header","text":"display images","value":"display-images","line":34,"column":0,"depth":3},"note":{"type":"header","text":"NOTE","value":"note","line":37,"column":0,"depth":2},"todo-next":{"type":"header","text":"TODO NEXT","value":"todo-next","line":43,"column":0,"depth":2}},"children":[],"parent":"rio2nla30r2q15iabe8v1dh","data":{}},"body":"
2022-12-01
\n
This is Maëlle's DBGI daily open-notebook.
\n
Today is 2022.12.01
\n
TODO
\n
\n
dbgi_id without regex
\n
url on directus
\n
display images
\n
\n
If everything done before end of day
\n
\n
go on with the tutorial
\n
\n
CODE
\n
url on directus
\n
Added directus-extension-display-link extension
\n
npminstall directus-extension-display-link\n
\n
display images
\n
=> Via links
\n
NOTE
\n
Had problems with conda environment and spent a lot of time resolving them
\n
Fetching the emi_external_id without regex in format_module.py now seems to work!\n=> problem was du to the environment
\n
TODO NEXT
\n
\n
go on with the tutorial
\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/zpzzdrcy89x64qt3ak35l1p.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/zpzzdrcy89x64qt3ak35l1p.json
new file mode 100644
index 000000000000..0482ecfc0b04
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/zpzzdrcy89x64qt3ak35l1p.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"zpzzdrcy89x64qt3ak35l1p","title":"2023-01-04","desc":"","updated":1672950655627,"created":1672827476796,"traitIds":["open-notebook-eb"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2023.01.04","type":"note","vault":{"fsPath":"vault"},"contentHash":"c3c703f63f1de4512f01a7267c7d4b8e","links":[],"anchors":{"this-is-edouards-dbgi-daily-open-notebook":{"type":"header","text":"This is Edouard's DBGI daily open-notebook.","value":"this-is-edouards-dbgi-daily-open-notebook","line":10,"column":0,"depth":1},"to-do":{"type":"header","text":"To do","value":"to-do","line":14,"column":0,"depth":1},"done":{"type":"header","text":"done","value":"done","line":24,"column":0,"depth":1},"perspectives":{"type":"header","text":"Perspectives","value":"perspectives","line":28,"column":0,"depth":1},"notes":{"type":"header","text":"notes","value":"notes","line":30,"column":0,"depth":1},"code":{"type":"header","text":"code","value":"code","line":32,"column":0,"depth":1},"links":{"type":"header","text":"links","value":"links","line":34,"column":0,"depth":1}},"children":[],"parent":"rwwstq9pnk2fqonf946x951","data":{}},"body":"
2023-01-04
\n
This is Edouard's DBGI daily open-notebook.
\n
Today is 2023.01.04
\n
To do
\n
\n
\n
Relabel the falcon with the bigger labels
\n
\n
\n
Try to host correctly the dbgi maps with geoserver
\n
\n
\n
Prepare the inserts for the mass spec analysis
\n
\n
\n
Optimize the communication between QGIS and iNaturalist
\n
\n
\n
done
\n
I found the way to display the map on the website. All is done, the only thing I have still to do is to find a way to host the map. For instance, I can only display the map on my own laptop, because the port is closed. I need to find a way to obtain an old computer and to open ports. But firstly I'll prepare the QGIS map. So the map display on the website is actually suspended.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/zrjj57h4vzxsgrmg86kfq9y.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/zrjj57h4vzxsgrmg86kfq9y.json
new file mode 100644
index 000000000000..60fa2f0bebf0
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/zrjj57h4vzxsgrmg86kfq9y.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.dbgi.pmallard.2022.11","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1695629345606,"created":1695629345606,"id":"zrjj57h4vzxsgrmg86kfq9y","desc":"","links":[],"anchors":{},"children":["66jqbal9euipagyvgmctw48","22h93l5bcgcf49juco6999m","exsm61uzanyidzpexhogq5e","g96a0vk2ap7k3pbng1k5val"],"parent":"m7rxlmot2oqmboiz9eomlja","data":{},"title":"11"},"body":"
\n","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/zt8wdp67jys2sl9ks4z0eqv.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/zt8wdp67jys2sl9ks4z0eqv.json
new file mode 100644
index 000000000000..15e010db87ca
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/zt8wdp67jys2sl9ks4z0eqv.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"zt8wdp67jys2sl9ks4z0eqv","title":"_e","desc":"","updated":1656059639672,"created":1656059639672,"isDir":false,"custom":{"isDir":false},"fname":"biblio._e","type":"note","vault":{"fsPath":"vault"},"contentHash":"019667735dc4888174c1de22a14aced6","links":[{"type":"wiki","from":{"fname":"biblio._e","id":"zt8wdp67jys2sl9ks4z0eqv","vaultName":"vault"},"value":"article","position":{"start":{"line":5,"column":14,"offset":95},"end":{"line":5,"column":25,"offset":106},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"article"}},{"type":"wiki","from":{"fname":"biblio._e","id":"zt8wdp67jys2sl9ks4z0eqv","vaultName":"vault"},"value":"2022-06-20","position":{"start":{"line":6,"column":15,"offset":121},"end":{"line":6,"column":29,"offset":135},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-06-20"}},{"type":"wiki","from":{"fname":"biblio._e","id":"zt8wdp67jys2sl9ks4z0eqv","vaultName":"vault"},"value":"botanical-garden-map","position":{"start":{"line":8,"column":11,"offset":161},"end":{"line":8,"column":35,"offset":185},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"botanical-garden-map"}},{"type":"wiki","from":{"fname":"biblio._e","id":"zt8wdp67jys2sl9ks4z0eqv","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":9,"column":3,"offset":188},"end":{"line":9,"column":10,"offset":195},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio._e","id":"zt8wdp67jys2sl9ks4z0eqv","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":9,"column":12,"offset":197},"end":{"line":9,"column":29,"offset":214},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio._e","id":"zt8wdp67jys2sl9ks4z0eqv","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":9,"column":31,"offset":216},"end":{"line":9,"column":41,"offset":226},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}}],"anchors":{"agisoft-metashape-user-manual---professional-edition-version-16":{"type":"header","text":"Agisoft Metashape User Manual - Professional Edition, Version 1.6","value":"agisoft-metashape-user-manual---professional-edition-version-16","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":21,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
_e
\n
Agisoft Metashape User Manual - Professional Edition, Version 1.6
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/ztlzk5dmtvco58whz3logbq.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/ztlzk5dmtvco58whz3logbq.json
new file mode 100644
index 000000000000..2bf54cfcb0cb
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/ztlzk5dmtvco58whz3logbq.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"ztlzk5dmtvco58whz3logbq","title":"_d","desc":"","updated":1656059639672,"created":1656059639672,"isDir":false,"custom":{"isDir":false},"fname":"biblio._d","type":"note","vault":{"fsPath":"vault"},"contentHash":"d7d66ead19285a3ef85d0f3a6d1e1f82","links":[{"type":"wiki","from":{"fname":"biblio._d","id":"ztlzk5dmtvco58whz3logbq","vaultName":"vault"},"value":"webpage","position":{"start":{"line":5,"column":14,"offset":46},"end":{"line":5,"column":25,"offset":57},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"webpage"}},{"type":"wiki","from":{"fname":"biblio._d","id":"ztlzk5dmtvco58whz3logbq","vaultName":"vault"},"value":"2022-06-19","position":{"start":{"line":6,"column":15,"offset":72},"end":{"line":6,"column":29,"offset":86},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"2022-06-19"}},{"type":"wiki","from":{"fname":"biblio._d","id":"ztlzk5dmtvco58whz3logbq","vaultName":"vault"},"value":"botanical-garden-map","position":{"start":{"line":9,"column":11,"offset":268},"end":{"line":9,"column":35,"offset":292},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"botanical-garden-map"}},{"type":"wiki","from":{"fname":"biblio._d","id":"ztlzk5dmtvco58whz3logbq","vaultName":"vault"},"value":"tags.zotero","alias":"#zotero","position":{"start":{"line":10,"column":3,"offset":295},"end":{"line":10,"column":10,"offset":302},"indent":[]},"xvault":false,"to":{"fname":"tags.zotero"}},{"type":"wiki","from":{"fname":"biblio._d","id":"ztlzk5dmtvco58whz3logbq","vaultName":"vault"},"value":"tags.literature-notes","alias":"#literature-notes","position":{"start":{"line":10,"column":12,"offset":304},"end":{"line":10,"column":29,"offset":321},"indent":[]},"xvault":false,"to":{"fname":"tags.literature-notes"}},{"type":"wiki","from":{"fname":"biblio._d","id":"ztlzk5dmtvco58whz3logbq","vaultName":"vault"},"value":"tags.reference","alias":"#reference","position":{"start":{"line":10,"column":31,"offset":323},"end":{"line":10,"column":41,"offset":333},"indent":[]},"xvault":false,"to":{"fname":"tags.reference"}},{"from":{"fname":"Bachelor-Work-2022.methodology.drone-map","id":"pydikqycpcrnouzggmjil9f","vaultName":"vault"},"type":"backlink","position":{"start":{"line":3,"column":187,"offset":612},"end":{"line":3,"column":200,"offset":625},"indent":[]},"value":"biblio._d"}],"anchors":{"swissimage-10-cm":{"type":"header","text":"SWISSIMAGE 10 cm","value":"swissimage-10-cm","line":8,"column":0,"depth":1},"metadata":{"type":"header","text":"Metadata","value":"metadata","line":10,"column":0,"depth":2},"abstract":{"type":"header","text":"Abstract","value":"abstract","line":19,"column":0,"depth":2},"zotero-links":{"type":"header","text":"Zotero links","value":"zotero-links","line":24,"column":0,"depth":2}},"children":[],"parent":"z1zl1fl62r0zie9azb8ejhm","data":{}},"body":"
La mosaïque d'orthophotos SWISSIMAGE 10 cm est un assemblage des nouvelles images aériennes numériques en couleurs sur l'ensemble de la Suisse avec une résolution au sol de 10 cm dans les régions de plaine et les principales vallées alpines et de 25 cm dans les Alpes. Elle est mise à jour selon un cycle de 3 ans.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/zue2odnpgpr8qgdzgwbxj5u.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/zue2odnpgpr8qgdzgwbxj5u.json
new file mode 100644
index 000000000000..556dbeeeb084
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/zue2odnpgpr8qgdzgwbxj5u.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"zue2odnpgpr8qgdzgwbxj5u","title":"Bibliography","desc":"","updated":1654022213866,"created":1653914697880,"custom":{},"fname":"research-proposal.bibliography","type":"note","vault":{"fsPath":"vault"},"contentHash":"a347e106e1618db4a0da574f7f2488de","links":[{"type":"wiki","from":{"fname":"research-proposal.bibliography","id":"zue2odnpgpr8qgdzgwbxj5u","vaultName":"vault"},"value":"people.maureen-kearney","position":{"start":{"line":60,"column":1,"offset":1728},"end":{"line":60,"column":27,"offset":1754},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"people.maureen-kearney"}}],"anchors":{"a-complete-digitization-of-german-herbaria-is-possible-sensible-and-should-be-started-now":{"type":"header","text":"A complete digitization of German herbaria is possible, sensible and should be started now","value":"a-complete-digitization-of-german-herbaria-is-possible-sensible-and-should-be-started-now","line":10,"column":0,"depth":1},"towards-interlinked-fair-biodiversity-knowledge-the-bicikl-perspective":{"type":"header","text":"Towards Interlinked FAIR Biodiversity Knowledge: The BiCIKL perspective","value":"towards-interlinked-fair-biodiversity-knowledge-the-bicikl-perspective","line":15,"column":0,"depth":1},"biodiversity-community-integrated-knowledge-library-bicikl":{"type":"header","text":"Biodiversity Community Integrated Knowledge Library (BiCIKL)","value":"biodiversity-community-integrated-knowledge-library-bicikl","line":21,"column":0,"depth":1},"httpswwwearthbiogenomeorg":{"type":"header","text":"https://www.earthbiogenome.org/","value":"httpswwwearthbiogenomeorg","line":25,"column":0,"depth":1},"the-earth-biogenome-project-2020-starting-the-clock":{"type":"header","text":"The Earth BioGenome Project 2020: Starting the clock","value":"the-earth-biogenome-project-2020-starting-the-clock","line":28,"column":0,"depth":1},"earth-biogenome-project-sequencing-life-for-the-future-of-life":{"type":"header","text":"Earth BioGenome Project: Sequencing life for the future of life","value":"earth-biogenome-project-sequencing-life-for-the-future-of-life","line":31,"column":0,"depth":1},"sequence-locally-think-globally-the-darwin-tree-of-life-project":{"type":"header","text":"Sequence locally, think globally: The Darwin Tree of Life Project","value":"sequence-locally-think-globally-the-darwin-tree-of-life-project","line":36,"column":0,"depth":1},"standards-recommendations-for-the-earth-biogenome-project":{"type":"header","text":"Standards recommendations for the Earth BioGenome Project","value":"standards-recommendations-for-the-earth-biogenome-project","line":41,"column":0,"depth":1},"biodiversity-loss-due-to-more-than-climate-change":{"type":"header","text":"Biodiversity loss due to more than climate change","value":"biodiversity-loss-due-to-more-than-climate-change","line":53,"column":0,"depth":1},"our-future-in-the-anthropocene-biosphere":{"type":"header","text":"Our future in the Anthropocene biosphere","value":"our-future-in-the-anthropocene-biosphere","line":58,"column":0,"depth":1}},"children":[],"parent":"p6xf974t6tqndzis0qjc9j6","data":{}},"body":"
Bibliography
\n
A complete digitization of German herbaria is possible, sensible and should be started now
Only by recognizing the complexity of biodiversity and the ancient and ongoing evolutionary and ecological processes that drive it will it be possible to develop coherent policies for sustaining the planet’s biodiversity and the services that it provides.
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/data/xTabN-GDN3smTHP7khes1/notes/zyggmfzsugn2pi3ozn3lh74.json b/_next/data/xTabN-GDN3smTHP7khes1/notes/zyggmfzsugn2pi3ozn3lh74.json
new file mode 100644
index 000000000000..c330df077a38
--- /dev/null
+++ b/_next/data/xTabN-GDN3smTHP7khes1/notes/zyggmfzsugn2pi3ozn3lh74.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"id":"zyggmfzsugn2pi3ozn3lh74","title":"2022-04-06","desc":"","updated":1655027552123,"created":1649236372024,"traitIds":["journalNote"],"custom":{},"fname":"open-notebook.dbgi.ebruelhart.2022.04.06","type":"note","vault":{"fsPath":"vault"},"contentHash":"1ab2384ebd8b11fa4b83198babd4ca1f","links":[],"anchors":{"starting-the-day":{"type":"header","text":"Starting the day","value":"starting-the-day","line":12,"column":0,"depth":2},"todays-todo":{"type":"header","text":"Today's Todo","value":"todays-todo","line":16,"column":0,"depth":3},"today-notes--ideas":{"type":"header","text":"Today Notes & ideas","value":"today-notes--ideas","line":22,"column":0,"depth":3},"ending-the-day":{"type":"header","text":"Ending the day","value":"ending-the-day","line":43,"column":0,"depth":2},"future-todo":{"type":"header","text":"Future Todo","value":"future-todo","line":47,"column":0,"depth":3}},"children":[],"parent":"gayd6f5rjdzpelcl7due270","data":{}},"body":"
For the lyophilisation we have tested 15ml tubes, that is a bit small for correctly putting plant parts in it. 50ml would be better. We have tested two different technics to let the vacuum appen in the tube :
\n
\n
Make little holes in the lid -> Echevaria elegans
\n
Let a bit open by not completely screw the lid -> Oscularia deltoides, Ephedra helvetica, Leonurus cardiaca, Echevaria elegans
\n
\n
Use of the lyophilisator :
\n
\n
Turn on the button in the right of the machine
\n
Precool the machine (10 minutes) with the button on the screen
\n
Verify that all the circuit is closed (black wheel in the left of the screen and all the taps in the horizontal position)
\n
Put the sample in the jar and put it in one exit
\n
Open the tap (bigger part in the bottom)
\n
\n
The prelevated plants (4) of today are the same as the ones harvested by Pierre-Marie Allard 04th april that are the followings :
Today afternoon is the meeting with Horst Machguth that is the owner of the drone that we will use to cartography the botanical garden.
\n
Ending the day
\n
The drone fly is ok, but not already planified. We have to manage with the botanical garden collaborators when we can fly. The lyophilisation has not worked properly, so we have put the samples in the freezer at -80°C during the night
\n
Future Todo
\n
\n
Before the meeting with Reynald Delaloye, we have to put again the samples in the lyophilisation machine.
\n
Tomorrow morning is the meeting with Reynald Delaloye that permits to use DGPS to georeference the cartography of the botanical garden
\n
Find a better way to carry liquid nitrogen in the garden for the plants prelevation
\n
","noteIndex":{"id":"txkHnVTI9AawnquiublXO","title":"The DBGI Dendron notes","desc":"","updated":1688889927268,"created":1645438795591,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"fbac06bb8ff15f08a14f40cc7c9e268e","links":[{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"open-notebook","position":{"start":{"line":28,"column":53,"offset":1976},"end":{"line":28,"column":70,"offset":1993},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook"}},{"type":"wiki","from":{"fname":"root","id":"txkHnVTI9AawnquiublXO","vaultName":"vault"},"value":"welcome","position":{"start":{"line":34,"column":81,"offset":2595},"end":{"line":34,"column":92,"offset":2606},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"welcome"}},{"from":{"fname":"welcome","id":"tofizf0eb38rduuw6ffnzba","vaultName":"vault"},"type":"backlink","position":{"start":{"line":5,"column":27,"offset":59},"end":{"line":5,"column":35,"offset":67},"indent":[]},"value":"root"}],"anchors":{"overview":{"type":"header","text":"Overview","value":"overview","line":8,"column":0,"depth":1},"main-goals":{"type":"header","text":"Main goals","value":"main-goals","line":12,"column":0,"depth":1},"an-open-science-project":{"type":"header","text":"An Open Science project","value":"an-open-science-project","line":18,"column":0,"depth":1},"working-with-the-workshop-doors-open":{"type":"header","text":"Working with the workshop doors open","value":"working-with-the-workshop-doors-open","line":21,"column":0,"depth":2},"open-notebook-science":{"type":"header","text":"Open Notebook Science","value":"open-notebook-science","line":28,"column":0,"depth":2},"whats-new-":{"type":"header","text":"What's new ?!","value":"whats-new-","line":43,"column":0,"depth":2}},"children":["a4ngr68s9ad0hxptzdp28uq","kwkq4jyak1qs8xg2nicjes0","se2pzun6petcy32hf5j3wuw","1u37mlza55e6dgksabcv7qn","nat1tahs5uze95g4vu680dk","iq3hz5b7sskcu56bl8pgbwq","hme3uzximkuhxdsn09ihhd7","z1zl1fl62r0zie9azb8ejhm","bum7d9d6lnc0a863iqaogka","o6r2k35gfsfur2gwgk56ra3","o2psjwj00vl4m8d7rgyfk9f","ha16yu7114ctzc0r7x83dkk","u3r5ovqpurmj36nsvmetsl8","8u9qb1u3gp4e3osrb73xvor","f7cx4bd1mxjt63d0daza1xb","yhy9x9k5bc082v5f87abgnv","eh30zgccb8kw1z36jlstijv","in0js6gupq7xxkwy716c93n","p6xf974t6tqndzis0qjc9j6","165zhtrhauww30lf9dbp8fa","trzsyfzfrls2if6tjt9dy5u","nnhoqwog50xoiu1bzbn6cyj","tofizf0eb38rduuw6ffnzba","v3eyay0icafeftx6kbyemlm","kdqbwl7mqgcpks5yv8yi9kf","k75suoydmrafnd5wl2tar2u","hiqtw79lwjeom9jxybqyyff","ayiiu4mlsoppocmondmfe6p","taqys3xr6utmvhoen4ibr7c","ri4no5zpfcj6m7ugodevmyo","162yano91jna1gh3m9qou3k"],"parent":null,"data":{},"body":"\n# Overview\n\nThe Digital Botanical Gardens Initiative (DBGI, www.dbgi.org) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus will be placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data will be structured, organized and connected with relevant metadata through [semantic web](https://en.wikipedia.org/wiki/Semantic_Web) technology. The gathered knowledge will then inform ecosystem functioning research and orient [biodiversity conservation](https://en.wikipedia.org/wiki/Conservation_biology) projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable biodiversity digitisation workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wildlife ecosystems. \n\n# Main goals\n\nThe DBGI main goals are briefly summarized below :\n\n{max-width: 400px, display: block, margin: 0 auto}\n\n# An Open Science project\n\n\n## Working with the workshop doors open\n\n{max-width: 400px}\n\nA way of working briefly described by Andy Matuschak here https://notes.andymatuschak.org/z21cgR9K3UcQ5a7yPsj2RUim3oM2TzdBByZu. \n\n\n## Open Notebook Science\n\nIf we apply this \"working with the workshop doors open\" idea to a scientific research endeavor we understand it as respecting the core concepts of Open Science. These is more precisely the principle of Open Notebook Science https://en.wikipedia.org/wiki/Open-notebook_science\n\nFor the projects of the DBGI we will follow such an Open Notebook Science approach in order to share early ideas and results but also the less shiny parts of the research projects. \n\nYou can follow the DBGI related Open Notebooks here [[open-notebook]].\n\nExpect to find strange ideas, badly formulated text and poorly written code. However if you have time and interest you should be able to participate at each step of the process. Hopefully this will lead to enhanced collaboration and participation. Maybe yes, maybe not. Let's make it a methodological experiment !\n\nEach pages of this website are written in markdown and hosted on Github. You can edit them by clicking on the \"Click here to edit this page on Github !\" link at the bottom of the page. See down there 👇\n\nIf you are willing to participate the the DBGI Dendron notes have a look at the [[welcome]] section to get you started !\n\n\n## What's new ?!\n\nThis web site might not necessarily seem to be change since the last time you came to visit.\n\nIf something moved recently you should be able to track this over there https://github.com/digital-botanical-gardens-initiative/dendron-dbgi/commits/main"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":true,"vaultSelectionModeOnCreate":"smart","leaveTrace":false,"bubbleUpCreateNew":true,"fuzzThreshold":0.2}},"randomNote":{},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"enableUserTags":true,"enableHashTags":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"enableEditorDecorations":true,"maxPreviewsCached":10,"maxNoteLength":204800,"dendronVersion":"0.84.0","enableFullHierarchyNoteTitle":false,"enableHandlebarTemplates":true,"hooks":{"onCreate":[{"id":"hello","pattern":"hello.*","type":"js"},{"id":"newbib","pattern":"bib.*","type":"js"}]}},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enablePrettyRefs":true,"enableKatex":true,"copyAssets":true,"siteHierarchies":["root"],"writeStubs":false,"siteRootDir":"docs","seo":{"title":"DBGI Dendron page","description":"Open Notebook Science in the DBGI"},"github":{"enableEditLink":true,"editLinkText":"Participate and click here to edit this page on Github !","editBranch":"main","editViewMode":"tree","editRepository":"https://github.com/digital-botanical-gardens-initiative/dendron-dbgi"},"enableSiteLastModified":true,"enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"enableTaskNotes":true,"enablePrettyLinks":true,"searchMode":"lookup","enableMermaid":true,"enableHierarchyDisplay":true,"assetsPrefix":"/dendron-dbgi","siteUrl":"https://digital-botanical-gardens-initiative.github.io","duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"ga":{"tracking":"G-EPEXM5GLLG"},"siteFaviconPath":"favicon.ico","siteIndex":"root"}}},"__N_SSG":true}
\ No newline at end of file
diff --git a/_next/static/chunks/213.a99245376cf52602.js b/_next/static/chunks/213.a99245376cf52602.js
new file mode 100644
index 000000000000..8f53a91bcfa0
--- /dev/null
+++ b/_next/static/chunks/213.a99245376cf52602.js
@@ -0,0 +1 @@
+"use strict";(self.webpackChunk_N_E=self.webpackChunk_N_E||[]).push([[213],{60213:function(u,e,n){n.r(e);var s=n(41799),t=n(85893),c=n(3808).Z.SubMenu;e.default=function(u){return(0,t.jsx)(c,(0,s.Z)({},u))}}}]);
\ No newline at end of file
diff --git a/_next/static/chunks/540.4659a6b1cb5ab05f.js b/_next/static/chunks/540.4659a6b1cb5ab05f.js
new file mode 100644
index 000000000000..e06d09e90ffc
--- /dev/null
+++ b/_next/static/chunks/540.4659a6b1cb5ab05f.js
@@ -0,0 +1 @@
+"use strict";(self.webpackChunk_N_E=self.webpackChunk_N_E||[]).push([[540],{92540:function(u,e,n){n.r(e);var s=n(41799),t=n(85893),c=n(3808);e.default=function(u){return(0,t.jsx)(c.Z,(0,s.Z)({},u))}}}]);
\ No newline at end of file
diff --git a/_next/static/chunks/6-50972def09142ee2.js b/_next/static/chunks/6-50972def09142ee2.js
new file mode 100644
index 000000000000..6e196a8df1b9
--- /dev/null
+++ b/_next/static/chunks/6-50972def09142ee2.js
@@ -0,0 +1 @@
+(self.webpackChunk_N_E=self.webpackChunk_N_E||[]).push([[6],{37870:function(e,t,n){"use strict";n.d(t,{Z:function(){return i}});var o=n(85893),r=n(67294);function i({id:e,host:t,repo:i,repoId:a,category:l,categoryId:p,mapping:c,term:s,strict:u,reactionsEnabled:h,emitMetadata:d,inputPosition:f,theme:g,lang:m,loading:v}){let[y,k]=(0,r.useState)(!1);return(0,r.useEffect)(()=>{y||(n.e(891).then(n.bind(n,32891)),k(!0))},[]),y?(0,o.jsx)("giscus-widget",{id:e,host:t,repo:i,repoid:a,category:l,categoryid:p,mapping:c,term:s,strict:u,reactionsenabled:h,emitmetadata:d,inputposition:f,theme:g,lang:m,loading:v}):null}},88351:function(e,t,n){"use strict";n.d(t,{Z:function(){return R}});var o,r,i=n(87462),a=n(4942),l=n(15671),p=n(43144),c=n(97326),s=n(32531),u=n(73568),h=n(67294),d=n(94184),f=n.n(d),g=n(30845),m=n(64019),v=n(71002),y=n(98423),k=n(48555),G=n(61975),b=n(74902),E=n(75164);function w(){return function(e,t,n){var o=n.value,r=!1;return{configurable:!0,get:function(){if(r||this===e.prototype||this.hasOwnProperty(t))return o;var n,i,a,l=(n=o.bind(this),(a=function(){if(null==i){for(var e,t=arguments.length,o=Array(t),r=0;re.top-n)return n+t.top}function O(e,t,n){if(void 0!==n&&t.bottom=0;l--)(r=e[l])&&(a=(i<3?r(a):i>3?r(t,n,a):r(t,n))||a);return i>3&&a&&Object.defineProperty(t,n,a),a};function A(){return"undefined"!=typeof window?window:null}(o=r||(r={}))[o.None=0]="None",o[o.Prepare=1]="Prepare";var Z=function(e){(0,s.Z)(n,e);var t=(0,u.Z)(n);function n(){var e;return(0,l.Z)(this,n),e=t.apply(this,arguments),e.state={status:r.None,lastAffix:!1,prevTarget:null},e.getOffsetTop=function(){var t=e.props,n=t.offsetBottom,o=t.offsetTop;return void 0===n&&void 0===o?0:o},e.getOffsetBottom=function(){return e.props.offsetBottom},e.savePlaceholderNode=function(t){e.placeholderNode=t},e.saveFixedNode=function(t){e.fixedNode=t},e.measure=function(){var t=e.state,n=t.status,o=t.lastAffix,i=e.props.onChange,a=e.getTargetFunc();if(n===r.Prepare&&e.fixedNode&&e.placeholderNode&&a){var l=e.getOffsetTop(),p=e.getOffsetBottom(),c=a();if(c){var s={status:r.None},u=x(c),h=x(e.placeholderNode),d=T(h,u,l),f=O(h,u,p);void 0!==d?(s.affixStyle={position:"fixed",top:d,width:h.width,height:h.height},s.placeholderStyle={width:h.width,height:h.height}):void 0!==f&&(s.affixStyle={position:"fixed",bottom:f,width:h.width,height:h.height},s.placeholderStyle={width:h.width,height:h.height}),s.lastAffix=!!s.affixStyle,i&&o!==s.lastAffix&&i(s.lastAffix),e.setState(s)}}},e.prepareMeasure=function(){e.setState({status:r.Prepare,affixStyle:void 0,placeholderStyle:void 0})},e}return(0,p.Z)(n,[{key:"getTargetFunc",value:function(){var e=this.context.getTargetContainer,t=this.props.target;return void 0!==t?t:e||A}},{key:"componentDidMount",value:function(){var e=this,t=this.getTargetFunc();t&&(this.timeout=setTimeout(function(){N(t(),e),e.updatePosition()}))}},{key:"componentDidUpdate",value:function(e){var t=this.state.prevTarget,n=this.getTargetFunc(),o=(null==n?void 0:n())||null;t!==o&&(L(this),o&&(N(o,this),this.updatePosition()),this.setState({prevTarget:o})),(e.offsetTop!==this.props.offsetTop||e.offsetBottom!==this.props.offsetBottom)&&this.updatePosition(),this.measure()}},{key:"componentWillUnmount",value:function(){clearTimeout(this.timeout),L(this),this.updatePosition.cancel(),this.lazyUpdatePosition.cancel()}},{key:"updatePosition",value:function(){this.prepareMeasure()}},{key:"lazyUpdatePosition",value:function(){var e=this.getTargetFunc(),t=this.state.affixStyle;if(e&&t){var n=this.getOffsetTop(),o=this.getOffsetBottom(),r=e();if(r&&this.placeholderNode){var i=x(r),a=x(this.placeholderNode),l=T(a,i,n),p=O(a,i,o);if(void 0!==l&&t.top===l||void 0!==p&&t.bottom===p)return}}this.prepareMeasure()}},{key:"render",value:function(){var e=this,t=this.context.getPrefixCls,n=this.state,o=n.affixStyle,r=n.placeholderStyle,l=this.props,p=l.prefixCls,c=l.children,s=f()((0,a.Z)({},t("affix",p),!!o)),u=(0,y.Z)(this.props,["prefixCls","offsetTop","offsetBottom","target","onChange"]);return h.createElement(k.Z,{onResize:function(){e.updatePosition()}},h.createElement("div",(0,i.Z)({},u,{ref:this.savePlaceholderNode}),o&&h.createElement("div",{style:r,"aria-hidden":"true"}),h.createElement("div",{className:s,ref:this.saveFixedNode,style:o},h.createElement(k.Z,{onResize:function(){e.updatePosition()}},c))))}}]),n}(h.Component);function I(e){return null!=e&&e===e.window}function _(e,t){if("undefined"==typeof window)return 0;var n,o=t?"scrollTop":"scrollLeft",r=0;return I(e)?r=e[t?"pageYOffset":"pageXOffset"]:e instanceof Document?r=e.documentElement[o]:e&&(r=e[o]),e&&!I(e)&&"number"!=typeof r&&(r=null===(n=(e.ownerDocument||e).documentElement)||void 0===n?void 0:n[o]),r}Z.contextType=G.E_,S([w()],Z.prototype,"updatePosition",null),S([w()],Z.prototype,"lazyUpdatePosition",null);var H=h.createContext(null);function D(){return window}function W(e,t){if(!e.getClientRects().length)return 0;var n=e.getBoundingClientRect();return n.width||n.height?t===window?(t=e.ownerDocument.documentElement,n.top-t.clientTop):n.top-t.getBoundingClientRect().top:(0,n.top)}var M=/#([\S ]+)$/,V=function(e){(0,s.Z)(n,e);var t=(0,u.Z)(n);function n(){var e;return(0,l.Z)(this,n),e=t.apply(this,arguments),e.state={activeLink:null},e.wrapperRef=h.createRef(),e.links=[],e.registerLink=function(t){e.links.includes(t)||e.links.push(t)},e.unregisterLink=function(t){var n=e.links.indexOf(t);-1!==n&&e.links.splice(n,1)},e.getContainer=function(){var t,n=e.context.getTargetContainer;return(e.props.getContainer||n||D)()},e.handleScrollTo=function(t){var n=e.props,o=n.offsetTop,r=n.targetOffset;e.setCurrentActiveLink(t);var i=e.getContainer(),a=_(i,!0),l=M.exec(t);if(l){var p=document.getElementById(l[1]);if(p){var c=W(p,i),s=a+c;s-=void 0!==r?r:o||0,e.animating=!0,function(e){var t=arguments.length>1&&void 0!==arguments[1]?arguments[1]:{},n=t.getContainer,o=t.callback,r=t.duration,i=void 0===r?450:r,a=(void 0===n?function(){return window}:n)(),l=_(a,!0),p=Date.now(),c=function t(){var n,r,c,s,u,h=Date.now()-p,d=(n=h>i?i:h,u=e-l,(n/=i/2)<1?u/2*n*n*n+l:u/2*((n-=2)*n*n+2)+l);I(a)?a.scrollTo(window.pageXOffset,d):a instanceof HTMLDocument||"HTMLDocument"===a.constructor.name?a.documentElement.scrollTop=d:a.scrollTop=d,h0&&void 0!==arguments[0]?arguments[0]:0,t=arguments.length>1&&void 0!==arguments[1]?arguments[1]:5,n=[],o=this.getContainer();return(this.links.forEach(function(r){var i=M.exec(r.toString());if(i){var a=document.getElementById(i[1]);if(a){var l=W(a,o);le.top?t:e}).link:""}},{key:"render",value:function(){var e=this.context,t=e.getPrefixCls,n=e.direction,o=this.props,r=o.prefixCls,l=o.className,p=o.style,c=o.offsetTop,s=o.affix,u=o.showInkInFixed,d=o.children,g=o.onClick,m=this.state.activeLink,v=t("anchor",r);this.prefixCls=v;var y=f()("".concat(v,"-ink-ball"),{visible:m}),k=f()("".concat(v,"-wrapper"),(0,a.Z)({},"".concat(v,"-rtl"),"rtl"===n),void 0===l?"":l),G=f()(v,(0,a.Z)({},"".concat(v,"-fixed"),!s&&!u)),b=(0,i.Z)({maxHeight:c?"calc(100vh - ".concat(c,"px)"):"100vh"},p),E=h.createElement("div",{ref:this.wrapperRef,className:k,style:b},h.createElement("div",{className:G},h.createElement("div",{className:"".concat(v,"-ink")},h.createElement("span",{className:y,ref:this.saveInkNode})),d)),w=this.getMemoizedContextValue(m,g);return h.createElement(H.Provider,{value:w},s?h.createElement(Z,{offsetTop:c,target:this.getContainer},E):E)}}]),n}(h.Component);V.defaultProps={affix:!0,showInkInFixed:!1},V.contextType=G.E_;var B=function(e){(0,s.Z)(n,e);var t=(0,u.Z)(n);function n(){var e;return(0,l.Z)(this,n),e=t.apply(this,arguments),e.handleClick=function(t){var n=e.context,o=n.scrollTo,r=n.onClick,i=e.props,a=i.href,l=i.title;null==r||r(t,{title:l,href:a}),o(a)},e.renderAnchorLink=function(t){var n=t.getPrefixCls,o=e.props,r=o.prefixCls,i=o.href,l=o.title,p=o.children,c=o.className,s=o.target,u=n("anchor",r),d=e.context.activeLink===i,g=f()("".concat(u,"-link"),(0,a.Z)({},"".concat(u,"-link-active"),d),c),m=f()("".concat(u,"-link-title"),(0,a.Z)({},"".concat(u,"-link-title-active"),d));return h.createElement("div",{className:g},h.createElement("a",{className:m,href:i,title:"string"==typeof l?l:"",target:s,onClick:e.handleClick},l),p)},e}return(0,p.Z)(n,[{key:"componentDidMount",value:function(){this.context.registerLink(this.props.href)}},{key:"componentDidUpdate",value:function(e){var t=e.href,n=this.props.href;t!==n&&(this.context.unregisterLink(t),this.context.registerLink(n))}},{key:"componentWillUnmount",value:function(){this.context.unregisterLink(this.props.href)}},{key:"render",value:function(){return h.createElement(G.C,null,this.renderAnchorLink)}}]),n}(h.Component);B.defaultProps={href:"#"},B.contextType=H,V.Link=B;var R=V},2962:function(e,t,n){"use strict";n.d(t,{PB:function(){return u}});var o=n(9008),r=n.n(o),i=n(67294);function a(){return(a=Object.assign||function(e){for(var t=1;t0&&e.languageAlternates.forEach(function(e){s.push(i.createElement("link",{rel:"alternate",key:"languageAlternate-"+e.hrefLang,hrefLang:e.hrefLang,href:e.href}))}),e.twitter&&(e.twitter.cardType&&s.push(i.createElement("meta",{key:"twitter:card",name:"twitter:card",content:e.twitter.cardType})),e.twitter.site&&s.push(i.createElement("meta",{key:"twitter:site",name:"twitter:site",content:e.twitter.site})),e.twitter.handle&&s.push(i.createElement("meta",{key:"twitter:creator",name:"twitter:creator",content:e.twitter.handle}))),e.facebook&&e.facebook.appId&&s.push(i.createElement("meta",{key:"fb:app_id",property:"fb:app_id",content:e.facebook.appId})),(null!=(t=e.openGraph)&&t.title||e.title)&&s.push(i.createElement("meta",{key:"og:title",property:"og:title",content:(null==(r=e.openGraph)?void 0:r.title)||u})),(null!=(n=e.openGraph)&&n.description||e.description)&&s.push(i.createElement("meta",{key:"og:description",property:"og:description",content:(null==(l=e.openGraph)?void 0:l.description)||e.description})),e.openGraph){if((e.openGraph.url||e.canonical)&&s.push(i.createElement("meta",{key:"og:url",property:"og:url",content:e.openGraph.url||e.canonical})),e.openGraph.type){var T=e.openGraph.type.toLowerCase();s.push(i.createElement("meta",{key:"og:type",property:"og:type",content:T})),"profile"===T&&e.openGraph.profile?(e.openGraph.profile.firstName&&s.push(i.createElement("meta",{key:"profile:first_name",property:"profile:first_name",content:e.openGraph.profile.firstName})),e.openGraph.profile.lastName&&s.push(i.createElement("meta",{key:"profile:last_name",property:"profile:last_name",content:e.openGraph.profile.lastName})),e.openGraph.profile.username&&s.push(i.createElement("meta",{key:"profile:username",property:"profile:username",content:e.openGraph.profile.username})),e.openGraph.profile.gender&&s.push(i.createElement("meta",{key:"profile:gender",property:"profile:gender",content:e.openGraph.profile.gender}))):"book"===T&&e.openGraph.book?(e.openGraph.book.authors&&e.openGraph.book.authors.length&&e.openGraph.book.authors.forEach(function(e,t){s.push(i.createElement("meta",{key:"book:author:0"+t,property:"book:author",content:e}))}),e.openGraph.book.isbn&&s.push(i.createElement("meta",{key:"book:isbn",property:"book:isbn",content:e.openGraph.book.isbn})),e.openGraph.book.releaseDate&&s.push(i.createElement("meta",{key:"book:release_date",property:"book:release_date",content:e.openGraph.book.releaseDate})),e.openGraph.book.tags&&e.openGraph.book.tags.length&&e.openGraph.book.tags.forEach(function(e,t){s.push(i.createElement("meta",{key:"book:tag:0"+t,property:"book:tag",content:e}))})):"article"===T&&e.openGraph.article?(e.openGraph.article.publishedTime&&s.push(i.createElement("meta",{key:"article:published_time",property:"article:published_time",content:e.openGraph.article.publishedTime})),e.openGraph.article.modifiedTime&&s.push(i.createElement("meta",{key:"article:modified_time",property:"article:modified_time",content:e.openGraph.article.modifiedTime})),e.openGraph.article.expirationTime&&s.push(i.createElement("meta",{key:"article:expiration_time",property:"article:expiration_time",content:e.openGraph.article.expirationTime})),e.openGraph.article.authors&&e.openGraph.article.authors.length&&e.openGraph.article.authors.forEach(function(e,t){s.push(i.createElement("meta",{key:"article:author:0"+t,property:"article:author",content:e}))}),e.openGraph.article.section&&s.push(i.createElement("meta",{key:"article:section",property:"article:section",content:e.openGraph.article.section})),e.openGraph.article.tags&&e.openGraph.article.tags.length&&e.openGraph.article.tags.forEach(function(e,t){s.push(i.createElement("meta",{key:"article:tag:0"+t,property:"article:tag",content:e}))})):("video.movie"===T||"video.episode"===T||"video.tv_show"===T||"video.other"===T)&&e.openGraph.video&&(e.openGraph.video.actors&&e.openGraph.video.actors.length&&e.openGraph.video.actors.forEach(function(e,t){e.profile&&s.push(i.createElement("meta",{key:"video:actor:0"+t,property:"video:actor",content:e.profile})),e.role&&s.push(i.createElement("meta",{key:"video:actor:role:0"+t,property:"video:actor:role",content:e.role}))}),e.openGraph.video.directors&&e.openGraph.video.directors.length&&e.openGraph.video.directors.forEach(function(e,t){s.push(i.createElement("meta",{key:"video:director:0"+t,property:"video:director",content:e}))}),e.openGraph.video.writers&&e.openGraph.video.writers.length&&e.openGraph.video.writers.forEach(function(e,t){s.push(i.createElement("meta",{key:"video:writer:0"+t,property:"video:writer",content:e}))}),e.openGraph.video.duration&&s.push(i.createElement("meta",{key:"video:duration",property:"video:duration",content:e.openGraph.video.duration.toString()})),e.openGraph.video.releaseDate&&s.push(i.createElement("meta",{key:"video:release_date",property:"video:release_date",content:e.openGraph.video.releaseDate})),e.openGraph.video.tags&&e.openGraph.video.tags.length&&e.openGraph.video.tags.forEach(function(e,t){s.push(i.createElement("meta",{key:"video:tag:0"+t,property:"video:tag",content:e}))}),e.openGraph.video.series&&s.push(i.createElement("meta",{key:"video:series",property:"video:series",content:e.openGraph.video.series})))}e.defaultOpenGraphImageWidth&&(p.defaultOpenGraphImageWidth=e.defaultOpenGraphImageWidth),e.defaultOpenGraphImageHeight&&(p.defaultOpenGraphImageHeight=e.defaultOpenGraphImageHeight),e.openGraph.images&&e.openGraph.images.length&&s.push.apply(s,c("image",e.openGraph.images,{defaultWidth:p.defaultOpenGraphImageWidth,defaultHeight:p.defaultOpenGraphImageHeight})),e.defaultOpenGraphVideoWidth&&(p.defaultOpenGraphVideoWidth=e.defaultOpenGraphVideoWidth),e.defaultOpenGraphVideoHeight&&(p.defaultOpenGraphVideoHeight=e.defaultOpenGraphVideoHeight),e.openGraph.videos&&e.openGraph.videos.length&&s.push.apply(s,c("video",e.openGraph.videos,{defaultWidth:p.defaultOpenGraphVideoWidth,defaultHeight:p.defaultOpenGraphVideoHeight})),e.openGraph.locale&&s.push(i.createElement("meta",{key:"og:locale",property:"og:locale",content:e.openGraph.locale})),e.openGraph.site_name&&s.push(i.createElement("meta",{key:"og:site_name",property:"og:site_name",content:e.openGraph.site_name}))}return e.canonical&&s.push(i.createElement("link",{rel:"canonical",href:e.canonical,key:"canonical"})),e.additionalMetaTags&&e.additionalMetaTags.length>0&&e.additionalMetaTags.forEach(function(e){var t,n,o;s.push(i.createElement("meta",a({key:"meta:"+(null!=(t=null!=(n=null!=(o=e.keyOverride)?o:e.name)?n:e.property)?t:e.httpEquiv)},e)))}),null!=(o=e.additionalLinkTags)&&o.length&&e.additionalLinkTags.forEach(function(e){var t;s.push(i.createElement("link",a({key:"link"+(null!=(t=e.keyOverride)?t:e.href)+e.rel},e)))}),s};!function(e){function t(){return e.apply(this,arguments)||this}return l(t,e),t.prototype.render=function(){var e=this.props,t=e.title,n=e.titleTemplate,o=e.defaultTitle,a=e.dangerouslyDisableGooglebot,l=e.dangerouslySetAllPagesToNoIndex,p=e.dangerouslySetAllPagesToNoFollow,c=e.description,u=e.canonical,h=e.facebook,d=e.openGraph,f=e.additionalMetaTags,g=e.twitter,m=e.defaultOpenGraphImageWidth,v=e.defaultOpenGraphImageHeight,y=e.defaultOpenGraphVideoWidth,k=e.defaultOpenGraphVideoHeight,G=e.mobileAlternate,b=e.languageAlternates,E=e.additionalLinkTags;return i.createElement(r(),null,s({title:t,titleTemplate:n,defaultTitle:o,dangerouslySetAllPagesToNoIndex:void 0!==l&&l,dangerouslySetAllPagesToNoFollow:void 0!==p&&p,description:c,canonical:u,facebook:h,openGraph:d,additionalMetaTags:f,twitter:g,defaultOpenGraphImageWidth:m,defaultOpenGraphImageHeight:v,defaultOpenGraphVideoWidth:y,defaultOpenGraphVideoHeight:k,mobileAlternate:G,languageAlternates:b,additionalLinkTags:E,dangerouslyDisableGooglebot:void 0!==a&&a}))},t}(i.Component);var u=function(e){function t(){return e.apply(this,arguments)||this}return l(t,e),t.prototype.render=function(){var e=this.props,t=e.title,n=e.noindex,o=e.nofollow,a=e.robotsProps,l=e.description,p=e.canonical,c=e.openGraph,u=e.facebook,h=e.twitter,d=e.additionalMetaTags,f=e.titleTemplate,g=e.mobileAlternate,m=e.languageAlternates,v=e.additionalLinkTags,y=e.disableGooglebot;return i.createElement(r(),null,s({title:t,noindex:void 0!==n&&n,nofollow:o,robotsProps:a,description:l,canonical:p,facebook:u,openGraph:c,additionalMetaTags:d,twitter:h,titleTemplate:f,mobileAlternate:g,languageAlternates:m,additionalLinkTags:v,disableGooglebot:y}))},t}(i.Component)},4298:function(e,t,n){e.exports=n(20699)},99534:function(e,t,n){"use strict";function o(e,t){if(null==e)return{};var n,o,r=function(e,t){if(null==e)return{};var n,o,r={},i=Object.keys(e);for(o=0;o=0||(r[n]=e[n]);return r}(e,t);if(Object.getOwnPropertySymbols){var i=Object.getOwnPropertySymbols(e);for(o=0;o=0)&&Object.prototype.propertyIsEnumerable.call(e,n)&&(r[n]=e[n])}return r}n.d(t,{Z:function(){return o}})}}]);
\ No newline at end of file
diff --git a/_next/static/chunks/798.742f113b527e9786.js b/_next/static/chunks/798.742f113b527e9786.js
new file mode 100644
index 000000000000..a8ebfbebab34
--- /dev/null
+++ b/_next/static/chunks/798.742f113b527e9786.js
@@ -0,0 +1 @@
+"use strict";(self.webpackChunk_N_E=self.webpackChunk_N_E||[]).push([[798],{42798:function(e,u,n){n.r(u);var t=n(41799),s=n(85893),c=n(3808);u.default=function(e){return(0,s.jsx)(c.Z.Item,(0,t.Z)({},e))}}}]);
\ No newline at end of file
diff --git a/_next/static/chunks/891.679e09cefaa741ef.js b/_next/static/chunks/891.679e09cefaa741ef.js
new file mode 100644
index 000000000000..35b6bcedd01d
--- /dev/null
+++ b/_next/static/chunks/891.679e09cefaa741ef.js
@@ -0,0 +1,42 @@
+"use strict";(self.webpackChunk_N_E=self.webpackChunk_N_E||[]).push([[891],{32891:function(t,e,i){i.r(e),i.d(e,{GiscusWidget:function(){return tP}});/**
+ * @license
+ * Copyright 2019 Google LLC
+ * SPDX-License-Identifier: BSD-3-Clause
+ */ let s=window.ShadowRoot&&(void 0===window.ShadyCSS||window.ShadyCSS.nativeShadow)&&"adoptedStyleSheets"in Document.prototype&&"replace"in CSSStyleSheet.prototype,r=Symbol(),n=new WeakMap;class o{constructor(t,e,i){if(this._$cssResult$=!0,i!==r)throw Error("CSSResult is not constructable. Use `unsafeCSS` or `css` instead.");this.cssText=t,this.t=e}get styleSheet(){let t=this.o,e=this.t;if(s&&void 0===t){let i=void 0!==e&&1===e.length;i&&(t=n.get(e)),void 0===t&&((this.o=t=new CSSStyleSheet).replaceSync(this.cssText),i&&n.set(e,t))}return t}toString(){return this.cssText}}let l=t=>new o("string"==typeof t?t:t+"",void 0,r),h=(t,...e)=>{let i=1===t.length?t[0]:e.reduce((e,i,s)=>e+(t=>{if(!0===t._$cssResult$)return t.cssText;if("number"==typeof t)return t;throw Error("Value passed to 'css' function must be a 'css' function result: "+t+". Use 'unsafeCSS' to pass non-literal values, but take care to ensure page security.")})(i)+t[s+1],t[0]);return new o(i,t,r)},a=(t,e)=>{s?t.adoptedStyleSheets=e.map(t=>t instanceof CSSStyleSheet?t:t.styleSheet):e.forEach(e=>{let i=document.createElement("style"),s=window.litNonce;void 0!==s&&i.setAttribute("nonce",s),i.textContent=e.cssText,t.appendChild(i)})},d=s?t=>t:t=>t instanceof CSSStyleSheet?(t=>{let e="";for(let i of t.cssRules)e+=i.cssText;return l(e)})(t):t,c=window.trustedTypes,u=c?c.emptyScript:"",p=window.reactiveElementPolyfillSupport,_={toAttribute(t,e){switch(e){case Boolean:t=t?u:null;break;case Object:case Array:t=null==t?t:JSON.stringify(t)}return t},fromAttribute(t,e){let i=t;switch(e){case Boolean:i=null!==t;break;case Number:i=null===t?null:Number(t);break;case Object:case Array:try{i=JSON.parse(t)}catch{i=null}}return i}},$=(t,e)=>e!==t&&(e==e||t==t),v={attribute:!0,type:String,converter:_,reflect:!1,hasChanged:$};class g extends HTMLElement{constructor(){super(),this._$Ei=new Map,this.isUpdatePending=!1,this.hasUpdated=!1,this._$El=null,this.u()}static addInitializer(t){var e;null!==(e=this.h)&&void 0!==e||(this.h=[]),this.h.push(t)}static get observedAttributes(){this.finalize();let t=[];return this.elementProperties.forEach((e,i)=>{let s=this._$Ep(i,e);void 0!==s&&(this._$Ev.set(s,i),t.push(s))}),t}static createProperty(t,e=v){if(e.state&&(e.attribute=!1),this.finalize(),this.elementProperties.set(t,e),!e.noAccessor&&!this.prototype.hasOwnProperty(t)){let i="symbol"==typeof t?Symbol():"__"+t,s=this.getPropertyDescriptor(t,i,e);void 0!==s&&Object.defineProperty(this.prototype,t,s)}}static getPropertyDescriptor(t,e,i){return{get(){return this[e]},set(s){let r=this[t];this[e]=s,this.requestUpdate(t,r,i)},configurable:!0,enumerable:!0}}static getPropertyOptions(t){return this.elementProperties.get(t)||v}static finalize(){if(this.hasOwnProperty("finalized"))return!1;this.finalized=!0;let t=Object.getPrototypeOf(this);if(t.finalize(),this.elementProperties=new Map(t.elementProperties),this._$Ev=new Map,this.hasOwnProperty("properties")){let e=this.properties,i=[...Object.getOwnPropertyNames(e),...Object.getOwnPropertySymbols(e)];for(let s of i)this.createProperty(s,e[s])}return this.elementStyles=this.finalizeStyles(this.styles),!0}static finalizeStyles(t){let e=[];if(Array.isArray(t)){let i=new Set(t.flat(1/0).reverse());for(let s of i)e.unshift(d(s))}else void 0!==t&&e.push(d(t));return e}static _$Ep(t,e){let i=e.attribute;return!1===i?void 0:"string"==typeof i?i:"string"==typeof t?t.toLowerCase():void 0}u(){var t;this._$E_=new Promise(t=>this.enableUpdating=t),this._$AL=new Map,this._$Eg(),this.requestUpdate(),null===(t=this.constructor.h)||void 0===t||t.forEach(t=>t(this))}addController(t){var e,i;(null!==(e=this._$ES)&&void 0!==e?e:this._$ES=[]).push(t),void 0!==this.renderRoot&&this.isConnected&&(null===(i=t.hostConnected)||void 0===i||i.call(t))}removeController(t){var e;null===(e=this._$ES)||void 0===e||e.splice(this._$ES.indexOf(t)>>>0,1)}_$Eg(){this.constructor.elementProperties.forEach((t,e)=>{this.hasOwnProperty(e)&&(this._$Ei.set(e,this[e]),delete this[e])})}createRenderRoot(){var t;let e=null!==(t=this.shadowRoot)&&void 0!==t?t:this.attachShadow(this.constructor.shadowRootOptions);return a(e,this.constructor.elementStyles),e}connectedCallback(){var t;void 0===this.renderRoot&&(this.renderRoot=this.createRenderRoot()),this.enableUpdating(!0),null===(t=this._$ES)||void 0===t||t.forEach(t=>{var e;return null===(e=t.hostConnected)||void 0===e?void 0:e.call(t)})}enableUpdating(t){}disconnectedCallback(){var t;null===(t=this._$ES)||void 0===t||t.forEach(t=>{var e;return null===(e=t.hostDisconnected)||void 0===e?void 0:e.call(t)})}attributeChangedCallback(t,e,i){this._$AK(t,i)}_$EO(t,e,i=v){var s,r;let n=this.constructor._$Ep(t,i);if(void 0!==n&&!0===i.reflect){let o=(null!==(r=null===(s=i.converter)||void 0===s?void 0:s.toAttribute)&&void 0!==r?r:_.toAttribute)(e,i.type);this._$El=t,null==o?this.removeAttribute(n):this.setAttribute(n,o),this._$El=null}}_$AK(t,e){var i,s;let r=this.constructor,n=r._$Ev.get(t);if(void 0!==n&&this._$El!==n){let o=r.getPropertyOptions(n),l=o.converter,h=null!==(s=null!==(i=null==l?void 0:l.fromAttribute)&&void 0!==i?i:"function"==typeof l?l:null)&&void 0!==s?s:_.fromAttribute;this._$El=n,this[n]=h(e,o.type),this._$El=null}}requestUpdate(t,e,i){let s=!0;void 0!==t&&(((i=i||this.constructor.getPropertyOptions(t)).hasChanged||$)(this[t],e)?(this._$AL.has(t)||this._$AL.set(t,e),!0===i.reflect&&this._$El!==t&&(void 0===this._$EC&&(this._$EC=new Map),this._$EC.set(t,i))):s=!1),!this.isUpdatePending&&s&&(this._$E_=this._$Ej())}async _$Ej(){this.isUpdatePending=!0;try{await this._$E_}catch(t){Promise.reject(t)}let e=this.scheduleUpdate();return null!=e&&await e,!this.isUpdatePending}scheduleUpdate(){return this.performUpdate()}performUpdate(){var t;if(!this.isUpdatePending)return;this.hasUpdated,this._$Ei&&(this._$Ei.forEach((t,e)=>this[e]=t),this._$Ei=void 0);let e=!1,i=this._$AL;try{(e=this.shouldUpdate(i))?(this.willUpdate(i),null===(t=this._$ES)||void 0===t||t.forEach(t=>{var e;return null===(e=t.hostUpdate)||void 0===e?void 0:e.call(t)}),this.update(i)):this._$Ek()}catch(s){throw e=!1,this._$Ek(),s}e&&this._$AE(i)}willUpdate(t){}_$AE(t){var e;null===(e=this._$ES)||void 0===e||e.forEach(t=>{var e;return null===(e=t.hostUpdated)||void 0===e?void 0:e.call(t)}),this.hasUpdated||(this.hasUpdated=!0,this.firstUpdated(t)),this.updated(t)}_$Ek(){this._$AL=new Map,this.isUpdatePending=!1}get updateComplete(){return this.getUpdateComplete()}getUpdateComplete(){return this._$E_}shouldUpdate(t){return!0}update(t){void 0!==this._$EC&&(this._$EC.forEach((t,e)=>this._$EO(e,this[e],t)),this._$EC=void 0),this._$Ek()}updated(t){}firstUpdated(t){}}g.finalized=!0,g.elementProperties=new Map,g.elementStyles=[],g.shadowRootOptions={mode:"open"},null==p||p({ReactiveElement:g}),(null!==(tA=globalThis.reactiveElementVersions)&&void 0!==tA?tA:globalThis.reactiveElementVersions=[]).push("1.3.4");let f=globalThis.trustedTypes,m=f?f.createPolicy("lit-html",{createHTML:t=>t}):void 0,A=`lit$${(Math.random()+"").slice(9)}$`,y="?"+A,S=`<${y}>`,E=document,b=(t="")=>E.createComment(t),w=t=>null===t||"object"!=typeof t&&"function"!=typeof t,C=Array.isArray,U=t=>C(t)||"function"==typeof(null==t?void 0:t[Symbol.iterator]),P=/<(?:(!--|\/[^a-zA-Z])|(\/?[a-zA-Z][^>\s]*)|(\/?$))/g,T=/-->/g,N=/>/g,O=RegExp(`>|[
+\f\r](?:([^\\s"'>=/]+)([
+\f\r]*=[
+\f\r]*(?:[^
+\f\r"'\`<>=]|("|')|))|$)`,"g"),I=/'/g,M=/"/g,R=/^(?:script|style|textarea|title)$/i,H=t=>(e,...i)=>({_$litType$:t,strings:e,values:i}),k=H(1),x=Symbol.for("lit-noChange"),L=Symbol.for("lit-nothing"),z=new WeakMap,D=(t,e,i)=>{var s,r;let n=null!==(s=null==i?void 0:i.renderBefore)&&void 0!==s?s:e,o=n._$litPart$;if(void 0===o){let l=null!==(r=null==i?void 0:i.renderBefore)&&void 0!==r?r:null;n._$litPart$=o=new K(e.insertBefore(b(),l),l,void 0,null!=i?i:{})}return o._$AI(t),o},Y=E.createTreeWalker(E,129,null,!1),j=(t,e)=>{let i=t.length-1,s=[],r,n=2===e?"":"");if(!Array.isArray(t)||!t.hasOwnProperty("raw"))throw Error("invalid template strings array");return[void 0!==m?m.createHTML(_):_,s]};class B{constructor({strings:t,_$litType$:e},i){let s;this.parts=[];let r=0,n=0,o=t.length-1,l=this.parts,[h,a]=j(t,e);if(this.el=B.createElement(h,i),Y.currentNode=this.el.content,2===e){let d=this.el.content,c=d.firstChild;c.remove(),d.append(...c.childNodes)}for(;null!==(s=Y.nextNode())&&l.length0){s.textContent=f?f.emptyScript:"";for(let E=0;E2||""!==i[0]||""!==i[1]?(this._$AH=Array(i.length-1).fill(new String),this.strings=i):this._$AH=L}get tagName(){return this.element.tagName}get _$AU(){return this._$AM._$AU}_$AI(t,e=this,i,s){let r=this.strings,n=!1;if(void 0===r)t=G(this,t,e,0),(n=!w(t)||t!==this._$AH&&t!==x)&&(this._$AH=t);else{let o=t,l,h;for(t=r[0],l=0;l"method"!==e.kind||!e.descriptor||"value"in e.descriptor?{kind:"field",key:Symbol(),placement:"own",descriptor:{},originalKey:e.key,initializer(){"function"==typeof e.initializer&&(this[e.key]=e.initializer.call(this))},finisher(i){i.createProperty(e.key,t)}}:{...e,finisher(i){i.createProperty(e.key,t)}};function ts(t){return(e,i)=>void 0!==i?((t,e,i)=>{e.constructor.createProperty(i,t)})(t,e,i):ti(t,e)}null===(tb=window.HTMLSlotElement)||void 0===tb||tb.prototype.assignedElements;/**
+ * @license
+ * Copyright 2020 Google LLC
+ * SPDX-License-Identifier: BSD-3-Clause
+ */ let tr=t=>void 0===t.strings,tn={ATTRIBUTE:1,CHILD:2,PROPERTY:3,BOOLEAN_ATTRIBUTE:4,EVENT:5,ELEMENT:6},to=t=>(...e)=>({_$litDirective$:t,values:e});class tl{constructor(t){}get _$AU(){return this._$AM._$AU}_$AT(t,e,i){this._$Ct=t,this._$AM=e,this._$Ci=i}_$AS(t,e){return this.update(t,e)}update(t,e){return this.render(...e)}}/**
+ * @license
+ * Copyright 2017 Google LLC
+ * SPDX-License-Identifier: BSD-3-Clause
+ */ let th=(t,e)=>{var i,s;let r=t._$AN;if(void 0===r)return!1;for(let n of r)null===(s=(i=n)._$AO)||void 0===s||s.call(i,e,!1),th(n,e);return!0},ta=t=>{let e,i;do{if(void 0===(e=t._$AM))break;(i=e._$AN).delete(t),t=e}while((null==i?void 0:i.size)===0)},td=t=>{for(let e;e=t._$AM;t=e){let i=e._$AN;if(void 0===i)e._$AN=i=new Set;else if(i.has(t))break;i.add(t),tp(e)}};function tc(t){void 0!==this._$AN?(ta(this),this._$AM=t,td(this)):this._$AM=t}function tu(t,e=!1,i=0){let s=this._$AH,r=this._$AN;if(void 0!==r&&0!==r.size){if(e){if(Array.isArray(s))for(let n=i;n{var e,i,s,r;t.type==tn.CHILD&&(null!==(e=(s=t)._$AP)&&void 0!==e||(s._$AP=tu),null!==(i=(r=t)._$AQ)&&void 0!==i||(r._$AQ=tc))};class t_ extends tl{constructor(){super(...arguments),this._$AN=void 0}_$AT(t,e,i){super._$AT(t,e,i),td(this),this.isConnected=t._$AU}_$AO(t,e=!0){var i,s;t!==this.isConnected&&(this.isConnected=t,t?null===(i=this.reconnected)||void 0===i||i.call(this):null===(s=this.disconnected)||void 0===s||s.call(this)),e&&(th(this,t),ta(this))}setValue(t){if(tr(this._$Ct))this._$Ct._$AI(t,this);else{let e=[...this._$Ct._$AH];e[this._$Ci]=t,this._$Ct._$AI(e,this,0)}}disconnected(){}reconnected(){}}/**
+ * @license
+ * Copyright 2020 Google LLC
+ * SPDX-License-Identifier: BSD-3-Clause
+ */ let t$=()=>new tv;class tv{}let tg=new WeakMap,tf=to(class extends t_{render(t){return L}update(t,[e]){var i;let s=e!==this.Y;return s&&void 0!==this.Y&&this.rt(void 0),(s||this.lt!==this.ct)&&(this.Y=e,this.dt=null===(i=t.options)||void 0===i?void 0:i.host,this.rt(this.ct=t.element)),L}rt(t){var e;if("function"==typeof this.Y){let i=null!==(e=this.dt)&&void 0!==e?e:globalThis,s=tg.get(i);void 0===s&&(s=new WeakMap,tg.set(i,s)),void 0!==s.get(this.Y)&&this.Y.call(this.dt,void 0),s.set(this.Y,t),void 0!==t&&this.Y.call(this.dt,t)}else this.Y.value=t}get lt(){var t,e,i;return"function"==typeof this.Y?null===(e=tg.get(null!==(t=this.dt)&&void 0!==t?t:globalThis))||void 0===e?void 0:e.get(this.Y):null===(i=this.Y)||void 0===i?void 0:i.value}disconnected(){this.lt===this.ct&&this.rt(void 0)}reconnected(){this.rt(this.ct)}});var tm,tA,ty,tS,tE,tb,tw=Object.defineProperty,tC=Object.getOwnPropertyDescriptor,tU=(t,e,i,s)=>{for(var r,n=s>1?void 0:s?tC(e,i):e,o=t.length-1;o>=0;o--)(r=t[o])&&(n=(s?r(e,i,n):r(n))||n);return s&&n&&tw(e,i,n),n};let tP=class extends tt{constructor(){super(),this.GISCUS_SESSION_KEY="giscus-session",this.GISCUS_DEFAULT_HOST="https://giscus.app",this.ERROR_SUGGESTION="Please consider reporting this error at https://github.com/giscus/giscus/issues/new.",this.__session="",this._iframeRef=t$(),this.messageEventHandler=this.handleMessageEvent.bind(this),this.host=this.GISCUS_DEFAULT_HOST,this.strict="0",this.reactionsEnabled="1",this.emitMetadata="0",this.inputPosition="bottom",this.theme="light",this.lang="en",this.loading="eager",this.setupSession(),window.addEventListener("message",this.messageEventHandler)}get iframeRef(){return this._iframeRef.value}connectedCallback(){super.connectedCallback()}disconnectedCallback(){super.disconnectedCallback(),window.removeEventListener("message",this.messageEventHandler)}_formatError(t){return`[giscus] An error occurred. Error message: "${t}".`}setupSession(){let t=location.href,e=new URL(t),i=localStorage.getItem(this.GISCUS_SESSION_KEY),s=e.searchParams.get("giscus")||"";if(s){localStorage.setItem(this.GISCUS_SESSION_KEY,JSON.stringify(s)),this.__session=s,e.searchParams.delete("giscus"),history.replaceState(void 0,document.title,e.toString());return}if(i)try{this.__session=JSON.parse(i||"")||""}catch(r){this.__session="",localStorage.removeItem(this.GISCUS_SESSION_KEY),console.warn(`${this._formatError(null==r?void 0:r.message)} Session has been cleared.`)}}handleMessageEvent(t){if(t.origin!==this.host)return;let{data:e}=t;if(!("object"==typeof e&&e.giscus)||(this.iframeRef&&e.giscus.resizeHeight&&(this.iframeRef.style.height=`${e.giscus.resizeHeight}px`),!e.giscus.error))return;let i=e.giscus.error;if(i.includes("Bad credentials")||i.includes("Invalid state value")){if(null!==localStorage.getItem(this.GISCUS_SESSION_KEY)){localStorage.removeItem(this.GISCUS_SESSION_KEY),this.__session="",console.warn(`${this._formatError(i)} Session has been cleared.`),this.update(new Map);return}console.error(`${this._formatError(i)} No session is stored initially. ${this.ERROR_SUGGESTION}`)}if(i.includes("Discussion not found")){console.warn(`[giscus] ${i}. A new discussion will be created if a comment/reaction is submitted.`);return}console.error(`${this._formatError(i)} ${this.ERROR_SUGGESTION}`)}sendMessage(t){var e,i;null==(i=null==(e=this.iframeRef)?void 0:e.contentWindow)||i.postMessage({giscus:t},this.host)}updateConfig(){let t={setConfig:{repo:this.repo,repoId:this.repoId,category:this.category,categoryId:this.categoryId,term:this.getTerm(),number:+this.getNumber(),strict:"1"===this.strict,reactionsEnabled:"1"===this.reactionsEnabled,emitMetadata:"1"===this.emitMetadata,inputPosition:this.inputPosition,theme:this.theme,lang:this.lang}};this.sendMessage(t)}requestUpdate(t,e,i){if(!this.hasUpdated||"host"===t){super.requestUpdate(t,e,i);return}this.updateConfig()}getMetaContent(t,e=!1){let i=e?`meta[property='og:${t}'],`:"",s=document.querySelector(i+`meta[name='${t}']`);return s?s.content:""}_getCleanedUrl(){let t=new URL(location.href);return t.searchParams.delete("giscus"),t}getTerm(){switch(this.mapping){case"url":return`${this._getCleanedUrl()}`;case"title":return document.title;case"og:title":return this.getMetaContent("title",!0);case"specific":return this.term||"";case"number":return"";default:return location.pathname.length<2?"index":location.pathname.substring(1).replace(/\.\w+$/,"")}}getNumber(){return"number"===this.mapping&&this.term||""}getIframeSrc(){let t=this._getCleanedUrl().toString(),e=`${t}${this.id?"#"+this.id:""}`,i=this.getMetaContent("description",!0),s=this.getMetaContent("giscus:backlink")||t,r={origin:e,session:this.__session,repo:this.repo,repoId:this.repoId||"",category:this.category||"",categoryId:this.categoryId||"",term:this.getTerm(),number:this.getNumber(),strict:this.strict,reactionsEnabled:this.reactionsEnabled,emitMetadata:this.emitMetadata,inputPosition:this.inputPosition,theme:this.theme,description:i,backLink:s},n=this.lang?`/${this.lang}`:"",o=new URLSearchParams(r);return`${this.host}${n}/widget?${o}`}render(){return k`
+
+ `}};tP.styles=h`
+ :host,
+ iframe {
+ width: 100%;
+ border: none;
+ color-scheme: normal;
+ min-height: 150px;
+ }
+ `,tU([ts({reflect:!0})],tP.prototype,"host",2),tU([ts({reflect:!0})],tP.prototype,"repo",2),tU([ts({reflect:!0})],tP.prototype,"repoId",2),tU([ts({reflect:!0})],tP.prototype,"category",2),tU([ts({reflect:!0})],tP.prototype,"categoryId",2),tU([ts({reflect:!0})],tP.prototype,"mapping",2),tU([ts({reflect:!0})],tP.prototype,"term",2),tU([ts({reflect:!0})],tP.prototype,"strict",2),tU([ts({reflect:!0})],tP.prototype,"reactionsEnabled",2),tU([ts({reflect:!0})],tP.prototype,"emitMetadata",2),tU([ts({reflect:!0})],tP.prototype,"inputPosition",2),tU([ts({reflect:!0})],tP.prototype,"theme",2),tU([ts({reflect:!0})],tP.prototype,"lang",2),tU([ts({reflect:!0})],tP.prototype,"loading",2),tP=tU([(tm="giscus-widget",t=>{var e,i;return"function"==typeof t?(window.customElements.define(tm,t),t):((t,e)=>{let{kind:i,elements:s}=e;return{kind:i,elements:s,finisher(e){window.customElements.define(t,e)}}})(tm,t)})],tP)}}]);
\ No newline at end of file
diff --git a/_next/static/chunks/935-4dee79e80b8641c6.js b/_next/static/chunks/935-4dee79e80b8641c6.js
new file mode 100644
index 000000000000..37289a1ce0d4
--- /dev/null
+++ b/_next/static/chunks/935-4dee79e80b8641c6.js
@@ -0,0 +1 @@
+(self.webpackChunk_N_E=self.webpackChunk_N_E||[]).push([[935],{99960:function(e,t){"use strict";var n,r;Object.defineProperty(t,"__esModule",{value:!0}),t.Doctype=t.CDATA=t.Tag=t.Style=t.Script=t.Comment=t.Directive=t.Text=t.Root=t.isTag=t.ElementType=void 0,(r=n=t.ElementType||(t.ElementType={})).Root="root",r.Text="text",r.Directive="directive",r.Comment="comment",r.Script="script",r.Style="style",r.Tag="tag",r.CDATA="cdata",r.Doctype="doctype",t.isTag=function(e){return e.type===n.Tag||e.type===n.Script||e.type===n.Style},t.Root=n.Root,t.Text=n.Text,t.Directive=n.Directive,t.Comment=n.Comment,t.Script=n.Script,t.Style=n.Style,t.Tag=n.Tag,t.CDATA=n.CDATA,t.Doctype=n.Doctype},97790:function(e,t,n){"use strict";var r,i=this&&this.__extends||(r=function(e,t){return(r=Object.setPrototypeOf||({__proto__:[]})instanceof Array&&function(e,t){e.__proto__=t}||function(e,t){for(var n in t)Object.prototype.hasOwnProperty.call(t,n)&&(e[n]=t[n])})(e,t)},function(e,t){if("function"!=typeof t&&null!==t)throw TypeError("Class extends value "+String(t)+" is not a constructor or null");function n(){this.constructor=e}r(e,t),e.prototype=null===t?Object.create(t):(n.prototype=t.prototype,new n)}),o=this&&this.__assign||function(){return(o=Object.assign||function(e){for(var t,n=1,r=arguments.length;n0?this.children[this.children.length-1]:null},enumerable:!1,configurable:!0}),Object.defineProperty(t.prototype,"childNodes",{get:function(){return this.children},set:function(e){this.children=e},enumerable:!1,configurable:!0}),t}(s);t.NodeWithChildren=d;var h=function(e){function t(t){return e.call(this,a.ElementType.Root,t)||this}return i(t,e),t}(d);t.Document=h;var m=function(e){function t(t,n,r,i){void 0===r&&(r=[]),void 0===i&&(i="script"===t?a.ElementType.Script:"style"===t?a.ElementType.Style:a.ElementType.Tag);var o=e.call(this,i,r)||this;return o.name=t,o.attribs=n,o}return i(t,e),Object.defineProperty(t.prototype,"tagName",{get:function(){return this.name},set:function(e){this.name=e},enumerable:!1,configurable:!0}),Object.defineProperty(t.prototype,"attributes",{get:function(){var e=this;return Object.keys(this.attribs).map(function(t){var n,r;return{name:t,value:e.attribs[t],namespace:null===(n=e["x-attribsNamespace"])||void 0===n?void 0:n[t],prefix:null===(r=e["x-attribsPrefix"])||void 0===r?void 0:r[t]}})},enumerable:!1,configurable:!0}),t}(d);function g(e){return(0,a.isTag)(e)}function y(e){return e.type===a.ElementType.CDATA}function v(e){return e.type===a.ElementType.Text}function x(e){return e.type===a.ElementType.Comment}function b(e){return e.type===a.ElementType.Directive}function k(e){return e.type===a.ElementType.Root}function T(e,t){if(void 0===t&&(t=!1),v(e))n=new u(e.data);else if(x(e))n=new p(e.data);else if(g(e)){var n,r=t?E(e.children):[],i=new m(e.name,o({},e.attribs),r);r.forEach(function(e){return e.parent=i}),null!=e.namespace&&(i.namespace=e.namespace),e["x-attribsNamespace"]&&(i["x-attribsNamespace"]=o({},e["x-attribsNamespace"])),e["x-attribsPrefix"]&&(i["x-attribsPrefix"]=o({},e["x-attribsPrefix"])),n=i}else if(y(e)){var r=t?E(e.children):[],l=new d(a.ElementType.CDATA,r);r.forEach(function(e){return e.parent=l}),n=l}else if(k(e)){var r=t?E(e.children):[],s=new h(r);r.forEach(function(e){return e.parent=s}),e["x-mode"]&&(s["x-mode"]=e["x-mode"]),n=s}else if(b(e)){var c=new f(e.name,e.data);null!=e["x-name"]&&(c["x-name"]=e["x-name"],c["x-publicId"]=e["x-publicId"],c["x-systemId"]=e["x-systemId"]),n=c}else throw Error("Not implemented yet: ".concat(e.type));return n.startIndex=e.startIndex,n.endIndex=e.endIndex,null!=e.sourceCodeLocation&&(n.sourceCodeLocation=e.sourceCodeLocation),n}function E(e){for(var t=e.map(function(e){return T(e,!0)}),n=1;n/i,c=//i,u=function(){throw Error("This browser does not support `document.implementation.createHTMLDocument`")},p=function(){throw Error("This browser does not support `DOMParser.prototype.parseFromString`")};if("function"==typeof window.DOMParser){var f=new window.DOMParser;u=p=function(e,t){return t&&(e="<"+t+">"+e+""),f.parseFromString(e,"text/html")}}if(document.implementation){var d=n(1507).isIE,h=document.implementation.createHTMLDocument(d()?"html-dom-parser":void 0);u=function(e,t){return t?(h.documentElement.getElementsByTagName(t)[0].innerHTML=e,h):(h.documentElement.innerHTML=e,h)}}var m=document.createElement("template");m.content&&(r=function(e){return m.innerHTML=e,m.content.childNodes}),e.exports=function(e){var t,n,f,d,h=e.match(l);switch(h&&h[1]&&(t=h[1].toLowerCase()),t){case i:return n=p(e),!s.test(e)&&(f=n.getElementsByTagName(o)[0])&&f.parentNode.removeChild(f),!c.test(e)&&(f=n.getElementsByTagName(a)[0])&&f.parentNode.removeChild(f),n.getElementsByTagName(i);case o:case a:if(d=u(e).getElementsByTagName(t),c.test(e)&&s.test(e))return d[0].parentNode.childNodes;return d;default:if(r)return r(e);return u(e,a).getElementsByTagName(a)[0].childNodes}}},14152:function(e,t,n){var r=n(38276),i=n(1507).formatDOM,o=/<(![a-zA-Z\s]+)>/;e.exports=function(e){if("string"!=typeof e)throw TypeError("First argument must be a string");if(""===e)return[];var t,n=e.match(o);return n&&n[1]&&(t=n[1]),i(r(e),null,t)}},1507:function(e,t,n){for(var r,i=n(60885),o=n(97790),a=i.CASE_SENSITIVE_TAG_NAMES,l=o.Comment,s=o.Element,c=o.ProcessingInstruction,u=o.Text,p={},f=0,d=a.length;f1&&(u=h(u,{key:u.key||b})),y.push(u);continue}if("text"===o.type){if((c=!o.data.trim().length)&&o.parent&&!l(o.parent)||x&&c)continue;y.push(o.data);continue}switch(p=o.attribs,s(o)?a(p.style,p):p&&(p=i(p)),f=null,o.type){case"script":case"style":o.children[0]&&(p.dangerouslySetInnerHTML={__html:o.children[0].data});break;case"tag":"textarea"===o.name&&o.children[0]?p.defaultValue=o.children[0].data:o.children&&o.children.length&&(f=e(o.children,n));break;default:continue}k>1&&(p.key=b),y.push(m(o.name,p,f))}return 1===y.length?y[0]:y}},74606:function(e,t,n){var r=n(67294),i=n(41476).default,o={reactCompat:!0},a=r.version.split(".")[0]>=16,l=new Set(["tr","tbody","thead","tfoot","colgroup","table","head","html","frameset"]);e.exports={PRESERVE_CUSTOM_ATTRIBUTES:a,invertObject:function(e,t){if(!e||"object"!=typeof e)throw TypeError("First argument must be an object");var n,r,i="function"==typeof t,o={},a={};for(n in e){if(r=e[n],i&&(o=t(n,r))&&2===o.length){a[o[0]]=o[1];continue}"string"==typeof r&&(a[r]=n)}return a},isCustomComponent:function(e,t){if(-1===e.indexOf("-"))return t&&"string"==typeof t.is;switch(e){case"annotation-xml":case"color-profile":case"font-face":case"font-face-src":case"font-face-uri":case"font-face-format":case"font-face-name":case"missing-glyph":return!1;default:return!0}},setStyleProp:function(e,t){if(null!=e)try{t.style=i(e,o)}catch(n){t.style={}}},canTextBeChildOfNode:function(e){return!l.has(e.name)},elementsWithNoTextChildren:l}},18139:function(e){var t=/\/\*[^*]*\*+([^/*][^*]*\*+)*\//g,n=/\n/g,r=/^\s*/,i=/^(\*?[-#/*\\\w]+(\[[0-9a-z_-]+\])?)\s*/,o=/^:\s*/,a=/^((?:'(?:\\'|.)*?'|"(?:\\"|.)*?"|\([^)]*?\)|[^};])+)/,l=/^[;\s]*/,s=/^\s+|\s+$/g;function c(e){return e?e.replace(s,""):""}e.exports=function(e,s){if("string"!=typeof e)throw TypeError("First argument must be a string");if(!e)return[];s=s||{};var u=1,p=1;function f(e){var t=e.match(n);t&&(u+=t.length);var r=e.lastIndexOf("\n");p=~r?e.length-r:p+e.length}function d(){var e={line:u,column:p};return function(t){return t.position=new h(e),v(),t}}function h(e){this.start=e,this.end={line:u,column:p},this.source=s.source}h.prototype.content=e;var m=[];function g(t){var n=Error(s.source+":"+u+":"+p+": "+t);if(n.reason=t,n.filename=s.source,n.line=u,n.column=p,n.source=e,s.silent)m.push(n);else throw n}function y(t){var n=t.exec(e);if(n){var r=n[0];return f(r),e=e.slice(r.length),n}}function v(){y(r)}function x(e){var t;for(e=e||[];t=b();)!1!==t&&e.push(t);return e}function b(){var t=d();if("/"==e.charAt(0)&&"*"==e.charAt(1)){for(var n=2;""!=e.charAt(n)&&("*"!=e.charAt(n)||"/"!=e.charAt(n+1));)++n;if(n+=2,""===e.charAt(n-1))return g("End of comment missing");var r=e.slice(2,n-2);return p+=2,f(r),e=e.slice(n),p+=2,t({type:"comment",comment:r})}}function k(){var e=d(),n=y(i);if(n){if(b(),!y(o))return g("property missing ':'");var r=y(a),s=e({type:"declaration",property:c(n[0].replace(t,"")),value:r?c(r[0].replace(t,"")):""});return y(l),s}}return v(),function(){var e,t=[];for(x(t);e=k();)!1!==e&&(t.push(e),x(t));return t}()}},83:function(e,t,n){"use strict";function r(e,t){(null==t||t>e.length)&&(t=e.length);for(var n=0,r=Array(t);nt}return!1}(t,n,a,r)&&(n=null),r||null===a?(l=t,(!!b.call(k,l)||!b.call(w,l)&&(y.test(l)?k[l]=!0:(w[l]=!0,!1)))&&(null===n?e.removeAttribute(t):e.setAttribute(t,""+n))):a.mustUseProperty?e[a.propertyName]=null===n?3!==a.type&&"":n:(t=a.attributeName,r=a.attributeNamespace,null===n?e.removeAttribute(t):(n=3===(a=a.type)||4===a&&!0===n?"":""+n,r?e.setAttributeNS(r,t,n):e.setAttribute(t,n))))}"accent-height alignment-baseline arabic-form baseline-shift cap-height clip-path clip-rule color-interpolation color-interpolation-filters color-profile color-rendering dominant-baseline enable-background fill-opacity fill-rule flood-color flood-opacity font-family font-size font-size-adjust font-stretch font-style font-variant font-weight glyph-name glyph-orientation-horizontal glyph-orientation-vertical horiz-adv-x horiz-origin-x image-rendering letter-spacing lighting-color marker-end marker-mid marker-start overline-position overline-thickness paint-order panose-1 pointer-events rendering-intent shape-rendering stop-color stop-opacity strikethrough-position strikethrough-thickness stroke-dasharray stroke-dashoffset stroke-linecap stroke-linejoin stroke-miterlimit stroke-opacity stroke-width text-anchor text-decoration text-rendering underline-position underline-thickness unicode-bidi unicode-range units-per-em v-alphabetic v-hanging v-ideographic v-mathematical vector-effect vert-adv-y vert-origin-x vert-origin-y word-spacing writing-mode xmlns:xlink x-height".split(" ").forEach(function(e){var t=e.replace(_,x);S[t]=new E(t,1,!1,e,null,!1,!1)}),"xlink:actuate xlink:arcrole xlink:role xlink:show xlink:title xlink:type".split(" ").forEach(function(e){var t=e.replace(_,x);S[t]=new E(t,1,!1,e,"http://www.w3.org/1999/xlink",!1,!1)}),["xml:base","xml:lang","xml:space"].forEach(function(e){var t=e.replace(_,x);S[t]=new E(t,1,!1,e,"http://www.w3.org/XML/1998/namespace",!1,!1)}),["tabIndex","crossOrigin"].forEach(function(e){S[e]=new E(e,1,!1,e.toLowerCase(),null,!1,!1)}),S.xlinkHref=new E("xlinkHref",1,!1,"xlink:href","http://www.w3.org/1999/xlink",!0,!1),["src","href","action","formAction"].forEach(function(e){S[e]=new E(e,1,!1,e.toLowerCase(),null,!0,!0)});var P=s.__SECRET_INTERNALS_DO_NOT_USE_OR_YOU_WILL_BE_FIRED,N=60103,T=60106,L=60107,z=60108,O=60114,R=60109,M=60110,F=60112,I=60113,D=60120,U=60115,A=60116,V=60121,j=60128,B=60129,$=60130,W=60131;if("function"==typeof Symbol&&Symbol.for){var H=Symbol.for;N=H("react.element"),T=H("react.portal"),L=H("react.fragment"),z=H("react.strict_mode"),O=H("react.profiler"),R=H("react.provider"),M=H("react.context"),F=H("react.forward_ref"),I=H("react.suspense"),D=H("react.suspense_list"),U=H("react.memo"),A=H("react.lazy"),V=H("react.block"),H("react.scope"),j=H("react.opaque.id"),B=H("react.debug_trace_mode"),$=H("react.offscreen"),W=H("react.legacy_hidden")}var Q="function"==typeof Symbol&&Symbol.iterator;function q(e){return null===e||"object"!=typeof e?null:"function"==typeof(e=Q&&e[Q]||e["@@iterator"])?e:null}function K(e){if(void 0===ew)try{throw Error()}catch(n){var t=n.stack.trim().match(/\n( *(at )?)/);ew=t&&t[1]||""}return"\n"+ew+e}var Y=!1;function X(e,t){if(!e||Y)return"";Y=!0;var n=Error.prepareStackTrace;Error.prepareStackTrace=void 0;try{if(t){if(t=function(){throw Error()},Object.defineProperty(t.prototype,"props",{set:function(){throw Error()}}),"object"==typeof Reflect&&Reflect.construct){try{Reflect.construct(t,[])}catch(l){var r=l}Reflect.construct(e,[],t)}else{try{t.call()}catch(a){r=a}e.call(t.prototype)}}else{try{throw Error()}catch(o){r=o}e()}}catch(f){if(f&&r&&"string"==typeof f.stack){for(var u=f.stack.split("\n"),i=r.stack.split("\n"),s=u.length-1,c=i.length-1;1<=s&&0<=c&&u[s]!==i[c];)c--;for(;1<=s&&0<=c;s--,c--)if(u[s]!==i[c]){if(1!==s||1!==c)do if(s--,0>--c||u[s]!==i[c])return"\n"+u[s].replace(" at new "," at ");while(1<=s&&0<=c);break}}}finally{Y=!1,Error.prepareStackTrace=n}return(e=e?e.displayName||e.name:"")?K(e):""}function G(e){switch(e.tag){case 5:return K(e.type);case 16:return K("Lazy");case 13:return K("Suspense");case 19:return K("SuspenseList");case 0:case 2:case 15:return e=X(e.type,!1);case 11:return e=X(e.type.render,!1);case 22:return e=X(e.type._render,!1);case 1:return e=X(e.type,!0);default:return""}}function Z(e){if(null==e)return null;if("function"==typeof e)return e.displayName||e.name||null;if("string"==typeof e)return e;switch(e){case L:return"Fragment";case T:return"Portal";case O:return"Profiler";case z:return"StrictMode";case I:return"Suspense";case D:return"SuspenseList"}if("object"==typeof e)switch(e.$$typeof){case M:return(e.displayName||"Context")+".Consumer";case R:return(e._context.displayName||"Context")+".Provider";case F:var t=e.render;return t=t.displayName||t.name||"",e.displayName||(""!==t?"ForwardRef("+t+")":"ForwardRef");case U:return Z(e.type);case V:return Z(e._render);case A:t=e._payload,e=e._init;try{return Z(e(t))}catch(n){}}return null}function J(e){switch(typeof e){case"boolean":case"number":case"object":case"string":case"undefined":return e;default:return""}}function ee(e){var t=e.type;return(e=e.nodeName)&&"input"===e.toLowerCase()&&("checkbox"===t||"radio"===t)}function et(e){e._valueTracker||(e._valueTracker=function(e){var t=ee(e)?"checked":"value",n=Object.getOwnPropertyDescriptor(e.constructor.prototype,t),r=""+e[t];if(!e.hasOwnProperty(t)&&void 0!==n&&"function"==typeof n.get&&"function"==typeof n.set){var l=n.get,a=n.set;return Object.defineProperty(e,t,{configurable:!0,get:function(){return l.call(this)},set:function(e){r=""+e,a.call(this,e)}}),Object.defineProperty(e,t,{enumerable:n.enumerable}),{getValue:function(){return r},setValue:function(e){r=""+e},stopTracking:function(){e._valueTracker=null,delete e[t]}}}}(e))}function en(e){if(!e)return!1;var t=e._valueTracker;if(!t)return!0;var n=t.getValue(),r="";return e&&(r=ee(e)?e.checked?"true":"false":e.value),(e=r)!==n&&(t.setValue(e),!0)}function er(e){if(void 0===(e=e||("undefined"!=typeof document?document:void 0)))return null;try{return e.activeElement||e.body}catch(t){return e.body}}function el(e,t){var n=t.checked;return c({},t,{defaultChecked:void 0,defaultValue:void 0,value:void 0,checked:null!=n?n:e._wrapperState.initialChecked})}function ea(e,t){var n=null==t.defaultValue?"":t.defaultValue,r=null!=t.checked?t.checked:t.defaultChecked;n=J(null!=t.value?t.value:n),e._wrapperState={initialChecked:r,initialValue:n,controlled:"checkbox"===t.type||"radio"===t.type?null!=t.checked:null!=t.value}}function eo(e,t){null!=(t=t.checked)&&C(e,"checked",t,!1)}function eu(e,t){eo(e,t);var n=J(t.value),r=t.type;if(null!=n)"number"===r?(0===n&&""===e.value||e.value!=n)&&(e.value=""+n):e.value!==""+n&&(e.value=""+n);else if("submit"===r||"reset"===r){e.removeAttribute("value");return}t.hasOwnProperty("value")?es(e,t.type,n):t.hasOwnProperty("defaultValue")&&es(e,t.type,J(t.defaultValue)),null==t.checked&&null!=t.defaultChecked&&(e.defaultChecked=!!t.defaultChecked)}function ei(e,t,n){if(t.hasOwnProperty("value")||t.hasOwnProperty("defaultValue")){var r=t.type;if(!("submit"!==r&&"reset"!==r||void 0!==t.value&&null!==t.value))return;t=""+e._wrapperState.initialValue,n||t===e.value||(e.value=t),e.defaultValue=t}""!==(n=e.name)&&(e.name=""),e.defaultChecked=!!e._wrapperState.initialChecked,""!==n&&(e.name=n)}function es(e,t,n){("number"!==t||er(e.ownerDocument)!==e)&&(null==n?e.defaultValue=""+e._wrapperState.initialValue:e.defaultValue!==""+n&&(e.defaultValue=""+n))}function ec(e,t){var n,r;return e=c({children:void 0},t),n=t.children,r="",s.Children.forEach(n,function(e){null!=e&&(r+=e)}),(t=r)&&(e.children=t),e}function ef(e,t,n,r){if(e=e.options,t){t={};for(var l=0;l=n.length))throw Error(d(93));n=n[0]}t=n}null==t&&(t=""),n=t}e._wrapperState={initialValue:J(n)}}function eh(e,t){var n=J(t.value),r=J(t.defaultValue);null!=n&&((n=""+n)!==e.value&&(e.value=n),null==t.defaultValue&&e.defaultValue!==n&&(e.defaultValue=n)),null!=r&&(e.defaultValue=""+r)}function em(e){var t=e.textContent;t===e._wrapperState.initialValue&&""!==t&&null!==t&&(e.value=t)}var eg={html:"http://www.w3.org/1999/xhtml",mathml:"http://www.w3.org/1998/Math/MathML",svg:"http://www.w3.org/2000/svg"};function ev(e){switch(e){case"svg":return"http://www.w3.org/2000/svg";case"math":return"http://www.w3.org/1998/Math/MathML";default:return"http://www.w3.org/1999/xhtml"}}function ey(e,t){return null==e||"http://www.w3.org/1999/xhtml"===e?ev(t):"http://www.w3.org/2000/svg"===e&&"foreignObject"===t?"http://www.w3.org/1999/xhtml":e}var eb,ew,ek,eE=(eb=function(e,t){if(e.namespaceURI!==eg.svg||"innerHTML"in e)e.innerHTML=t;else{for((ek=ek||document.createElement("div")).innerHTML="",t=ek.firstChild;e.firstChild;)e.removeChild(e.firstChild);for(;t.firstChild;)e.appendChild(t.firstChild)}},"undefined"!=typeof MSApp&&MSApp.execUnsafeLocalFunction?function(e,t,n,r){MSApp.execUnsafeLocalFunction(function(){return eb(e,t,n,r)})}:eb);function eS(e,t){if(t){var n=e.firstChild;if(n&&n===e.lastChild&&3===n.nodeType){n.nodeValue=t;return}}e.textContent=t}var e_={animationIterationCount:!0,borderImageOutset:!0,borderImageSlice:!0,borderImageWidth:!0,boxFlex:!0,boxFlexGroup:!0,boxOrdinalGroup:!0,columnCount:!0,columns:!0,flex:!0,flexGrow:!0,flexPositive:!0,flexShrink:!0,flexNegative:!0,flexOrder:!0,gridArea:!0,gridRow:!0,gridRowEnd:!0,gridRowSpan:!0,gridRowStart:!0,gridColumn:!0,gridColumnEnd:!0,gridColumnSpan:!0,gridColumnStart:!0,fontWeight:!0,lineClamp:!0,lineHeight:!0,opacity:!0,order:!0,orphans:!0,tabSize:!0,widows:!0,zIndex:!0,zoom:!0,fillOpacity:!0,floodOpacity:!0,stopOpacity:!0,strokeDasharray:!0,strokeDashoffset:!0,strokeMiterlimit:!0,strokeOpacity:!0,strokeWidth:!0},ex=["Webkit","ms","Moz","O"];function eC(e,t,n){return null==t||"boolean"==typeof t||""===t?"":n||"number"!=typeof t||0===t||e_.hasOwnProperty(e)&&e_[e]?(""+t).trim():t+"px"}function eP(e,t){for(var n in e=e.style,t)if(t.hasOwnProperty(n)){var r=0===n.indexOf("--"),l=eC(n,t[n],r);"float"===n&&(n="cssFloat"),r?e.setProperty(n,l):e[n]=l}}Object.keys(e_).forEach(function(e){ex.forEach(function(t){e_[t=t+e.charAt(0).toUpperCase()+e.substring(1)]=e_[e]})});var eN=c({menuitem:!0},{area:!0,base:!0,br:!0,col:!0,embed:!0,hr:!0,img:!0,input:!0,keygen:!0,link:!0,meta:!0,param:!0,source:!0,track:!0,wbr:!0});function eT(e,t){if(t){if(eN[e]&&(null!=t.children||null!=t.dangerouslySetInnerHTML))throw Error(d(137,e));if(null!=t.dangerouslySetInnerHTML){if(null!=t.children)throw Error(d(60));if(!("object"==typeof t.dangerouslySetInnerHTML&&"__html"in t.dangerouslySetInnerHTML))throw Error(d(61))}if(null!=t.style&&"object"!=typeof t.style)throw Error(d(62))}}function eL(e,t){if(-1===e.indexOf("-"))return"string"==typeof t.is;switch(e){case"annotation-xml":case"color-profile":case"font-face":case"font-face-src":case"font-face-uri":case"font-face-format":case"font-face-name":case"missing-glyph":return!1;default:return!0}}function ez(e){return(e=e.target||e.srcElement||window).correspondingUseElement&&(e=e.correspondingUseElement),3===e.nodeType?e.parentNode:e}var eO=null,eR=null,eM=null;function eF(e){if(e=rM(e)){if("function"!=typeof eO)throw Error(d(280));var t=e.stateNode;t&&(t=rI(t),eO(e.stateNode,e.type,t))}}function eI(e){eR?eM?eM.push(e):eM=[e]:eR=e}function eD(){if(eR){var e=eR,t=eM;if(eM=eR=null,eF(e),t)for(e=0;er?0:1<n;n++)t.push(e);return t}function tD(e,t,n){e.pendingLanes|=t;var r=t-1;e.suspendedLanes&=r,e.pingedLanes&=r,(e=e.eventTimes)[t=31-tU(t)]=n}var tU=Math.clz32?Math.clz32:function(e){return 0===e?32:31-(tA(e)/tV|0)|0},tA=Math.log,tV=Math.LN2,tj=f.unstable_UserBlockingPriority,tB=f.unstable_runWithPriority,t$=!0;function tW(e,t,n,r){eB||eV();var l=eB;eB=!0;try{eA(tQ,e,t,n,r)}finally{(eB=l)||eW()}}function tH(e,t,n,r){tB(tj,tQ.bind(null,e,t,n,r))}function tQ(e,t,n,r){if(t$){var l;if((l=0==(4&t))&&0=nN),nz=!1;function nO(e,t){switch(e){case"keyup":return -1!==nC.indexOf(t.keyCode);case"keydown":return 229!==t.keyCode;case"keypress":case"mousedown":case"focusout":return!0;default:return!1}}function nR(e){return"object"==typeof(e=e.detail)&&"data"in e?e.data:null}var nM=!1,nF={color:!0,date:!0,datetime:!0,"datetime-local":!0,email:!0,month:!0,number:!0,password:!0,range:!0,search:!0,tel:!0,text:!0,time:!0,url:!0,week:!0};function nI(e){var t=e&&e.nodeName&&e.nodeName.toLowerCase();return"input"===t?!!nF[e.type]:"textarea"===t}function nD(e,t,n,r){eI(r),0<(t=rh(t,"onChange")).length&&(n=new t9("onChange","change",null,n,r),e.push({event:n,listeners:t}))}var nU=null,nA=null;function nV(e){ro(e,0)}function nj(e){var t=rF(e);if(en(t))return e}function nB(e,t){if("change"===e)return t}var n$=!1;if(v){if(v){var nW="oninput"in document;if(!nW){var nH=document.createElement("div");nH.setAttribute("oninput","return;"),nW="function"==typeof nH.oninput}r=nW}else r=!1;n$=r&&(!document.documentMode||9=t)return{node:r,offset:t-e};e=n}a:{for(;r;){if(r.nextSibling){r=r.nextSibling;break a}r=r.parentNode}r=void 0}r=n1(r)}}function n3(){for(var e=window,t=er();t instanceof e.HTMLIFrameElement;){try{var n="string"==typeof t.contentWindow.location.href}catch(r){n=!1}if(n)e=t.contentWindow;else break;t=er(e.document)}return t}function n4(e){var t=e&&e.nodeName&&e.nodeName.toLowerCase();return t&&("input"===t&&("text"===e.type||"search"===e.type||"tel"===e.type||"url"===e.type||"password"===e.type)||"textarea"===t||"true"===e.contentEditable)}var n6=v&&"documentMode"in document&&11>=document.documentMode,n9=null,n8=null,n5=null,n7=!1;function re(e,t,n){var r=n.window===n?n.document:9===n.nodeType?n:n.ownerDocument;n7||null==n9||n9!==er(r)||(r="selectionStart"in(r=n9)&&n4(r)?{start:r.selectionStart,end:r.selectionEnd}:{anchorNode:(r=(r.ownerDocument&&r.ownerDocument.defaultView||window).getSelection()).anchorNode,anchorOffset:r.anchorOffset,focusNode:r.focusNode,focusOffset:r.focusOffset},n5&&n0(n5,r)||(n5=r,0<(r=rh(n8,"onSelect")).length&&(t=new t9("onSelect","select",null,t,n),e.push({event:t,listeners:r}),t.target=n9)))}tL("cancel cancel click click close close contextmenu contextMenu copy copy cut cut auxclick auxClick dblclick doubleClick dragend dragEnd dragstart dragStart drop drop focusin focus focusout blur input input invalid invalid keydown keyDown keypress keyPress keyup keyUp mousedown mouseDown mouseup mouseUp paste paste pause pause play play pointercancel pointerCancel pointerdown pointerDown pointerup pointerUp ratechange rateChange reset reset seeked seeked submit submit touchcancel touchCancel touchend touchEnd touchstart touchStart volumechange volumeChange".split(" "),0),tL("drag drag dragenter dragEnter dragexit dragExit dragleave dragLeave dragover dragOver mousemove mouseMove mouseout mouseOut mouseover mouseOver pointermove pointerMove pointerout pointerOut pointerover pointerOver scroll scroll toggle toggle touchmove touchMove wheel wheel".split(" "),1),tL(["abort","abort",t_,"animationEnd",tx,"animationIteration",tC,"animationStart","canplay","canPlay","canplaythrough","canPlayThrough","durationchange","durationChange","emptied","emptied","encrypted","encrypted","ended","ended","error","error","gotpointercapture","gotPointerCapture","load","load","loadeddata","loadedData","loadedmetadata","loadedMetadata","loadstart","loadStart","lostpointercapture","lostPointerCapture","playing","playing","progress","progress","seeking","seeking","stalled","stalled","suspend","suspend","timeupdate","timeUpdate",tP,"transitionEnd","waiting","waiting"],2);for(var rt="change selectionchange textInput compositionstart compositionend compositionupdate".split(" "),rn=0;rnrA||(e.current=rU[rA],rU[rA]=null,rA--)}function rB(e,t){rU[++rA]=e.current,e.current=t}var r$={},rW=rV(r$),rH=rV(!1),rQ=r$;function rq(e,t){var n=e.type.contextTypes;if(!n)return r$;var r=e.stateNode;if(r&&r.__reactInternalMemoizedUnmaskedChildContext===t)return r.__reactInternalMemoizedMaskedChildContext;var l,a={};for(l in n)a[l]=t[l];return r&&((e=e.stateNode).__reactInternalMemoizedUnmaskedChildContext=t,e.__reactInternalMemoizedMaskedChildContext=a),a}function rK(e){return null!=(e=e.childContextTypes)}function rY(){rj(rH),rj(rW)}function rX(e,t,n){if(rW.current!==r$)throw Error(d(168));rB(rW,t),rB(rH,n)}function rG(e,t,n){var r=e.stateNode;if(e=t.childContextTypes,"function"!=typeof r.getChildContext)return n;for(var l in r=r.getChildContext())if(!(l in e))throw Error(d(108,Z(t)||"Unknown",l));return c({},n,r)}function rZ(e){return e=(e=e.stateNode)&&e.__reactInternalMemoizedMergedChildContext||r$,rQ=rW.current,rB(rW,e),rB(rH,rH.current),!0}function rJ(e,t,n){var r=e.stateNode;if(!r)throw Error(d(169));n?(e=rG(e,t,rQ),r.__reactInternalMemoizedMergedChildContext=e,rj(rH),rj(rW),rB(rW,e)):rj(rH),rB(rH,n)}var r0=null,r1=null,r2=f.unstable_runWithPriority,r3=f.unstable_scheduleCallback,r4=f.unstable_cancelCallback,r6=f.unstable_shouldYield,r9=f.unstable_requestPaint,r8=f.unstable_now,r5=f.unstable_getCurrentPriorityLevel,r7=f.unstable_ImmediatePriority,le=f.unstable_UserBlockingPriority,lt=f.unstable_NormalPriority,ln=f.unstable_LowPriority,lr=f.unstable_IdlePriority,ll={},la=void 0!==r9?r9:function(){},lo=null,lu=null,li=!1,ls=r8(),lc=1e4>ls?r8:function(){return r8()-ls};function lf(){switch(r5()){case r7:return 99;case le:return 98;case lt:return 97;case ln:return 96;case lr:return 95;default:throw Error(d(332))}}function ld(e){switch(e){case 99:return r7;case 98:return le;case 97:return lt;case 96:return ln;case 95:return lr;default:throw Error(d(332))}}function lp(e,t){return e=ld(e),r2(e,t)}function lh(e,t,n){return e=ld(e),r3(e,t,n)}function lm(){if(null!==lu){var e=lu;lu=null,r4(e)}lg()}function lg(){if(!li&&null!==lo){li=!0;var e=0;try{var t=lo;lp(99,function(){for(;em?(g=d,d=null):g=d.sibling;var v=p(l,d,u[m],i);if(null===v){null===d&&(d=g);break}e&&d&&null===v.alternate&&t(l,d),o=a(v,o,m),null===c?s=v:c.sibling=v,c=v,d=g}if(m===u.length)return n(l,d),s;if(null===d){for(;mg?(v=m,m=null):v=m.sibling;var b=p(l,m,y.value,i);if(null===b){null===m&&(m=v);break}e&&m&&null===b.alternate&&t(l,m),o=a(b,o,g),null===c?s=b:c.sibling=b,c=b,m=v}if(y.done)return n(l,m),s;if(null===m){for(;!y.done;g++,y=u.next())null!==(y=f(l,y.value,i))&&(o=a(y,o,g),null===c?s=y:c.sibling=y,c=y);return s}for(m=r(l,m);!y.done;g++,y=u.next())null!==(y=h(m,l,g,y.value,i))&&(e&&null!==y.alternate&&m.delete(null===y.key?g:y.key),o=a(y,o,g),null===c?s=y:c.sibling=y,c=y);return e&&m.forEach(function(e){return t(l,e)}),s}(u,i,s,c);if(g&&lH(u,s),void 0===s&&!m)switch(u.tag){case 1:case 22:case 0:case 11:case 15:throw Error(d(152,Z(u.type)||"Component"))}return n(u,i)}}var lq=lQ(!0),lK=lQ(!1),lY={},lX=rV(lY),lG=rV(lY),lZ=rV(lY);function lJ(e){if(e===lY)throw Error(d(174));return e}function l0(e,t){switch(rB(lZ,t),rB(lG,e),rB(lX,lY),e=t.nodeType){case 9:case 11:t=(t=t.documentElement)?t.namespaceURI:ey(null,"");break;default:t=ey(t=(e=8===e?t.parentNode:t).namespaceURI||null,e=e.tagName)}rj(lX),rB(lX,t)}function l1(){rj(lX),rj(lG),rj(lZ)}function l2(e){lJ(lZ.current);var t=lJ(lX.current),n=ey(t,e.type);t!==n&&(rB(lG,e),rB(lX,n))}function l3(e){lG.current===e&&(rj(lX),rj(lG))}var l4=rV(0);function l6(e){for(var t=e;null!==t;){if(13===t.tag){var n=t.memoizedState;if(null!==n&&(null===(n=n.dehydrated)||"$?"===n.data||"$!"===n.data))return t}else if(19===t.tag&&void 0!==t.memoizedProps.revealOrder){if(0!=(64&t.flags))return t}else if(null!==t.child){t.child.return=t,t=t.child;continue}if(t===e)break;for(;null===t.sibling;){if(null===t.return||t.return===e)return null;t=t.return}t.sibling.return=t.return,t=t.sibling}return null}var l9=null,l8=null,l5=!1;function l7(e,t){var n=uC(5,null,null,0);n.elementType="DELETED",n.type="DELETED",n.stateNode=t,n.return=e,n.flags=8,null!==e.lastEffect?(e.lastEffect.nextEffect=n,e.lastEffect=n):e.firstEffect=e.lastEffect=n}function ae(e,t){switch(e.tag){case 5:var n=e.type;return null!==(t=1!==t.nodeType||n.toLowerCase()!==t.nodeName.toLowerCase()?null:t)&&(e.stateNode=t,!0);case 6:return null!==(t=""===e.pendingProps||3!==t.nodeType?null:t)&&(e.stateNode=t,!0);default:return!1}}function at(e){if(l5){var t=l8;if(t){var n=t;if(!ae(e,t)){if(!(t=rx(n.nextSibling))||!ae(e,t)){e.flags=-1025&e.flags|2,l5=!1,l9=e;return}l7(l9,n)}l9=e,l8=rx(t.firstChild)}else e.flags=-1025&e.flags|2,l5=!1,l9=e}}function an(e){for(e=e.return;null!==e&&5!==e.tag&&3!==e.tag&&13!==e.tag;)e=e.return;l9=e}function ar(e){if(e!==l9)return!1;if(!l5)return an(e),l5=!0,!1;var t=e.type;if(5!==e.tag||"head"!==t&&"body"!==t&&!rk(t,e.memoizedProps))for(t=l8;t;)l7(e,t),t=rx(t.nextSibling);if(an(e),13===e.tag){if(!(e=null!==(e=e.memoizedState)?e.dehydrated:null))throw Error(d(317));a:{for(t=0,e=e.nextSibling;e;){if(8===e.nodeType){var n=e.data;if("/$"===n){if(0===t){l8=rx(e.nextSibling);break a}t--}else"$"!==n&&"$!"!==n&&"$?"!==n||t++}e=e.nextSibling}l8=null}}else l8=l9?rx(e.stateNode.nextSibling):null;return!0}function al(){l8=l9=null,l5=!1}var aa=[];function ao(){for(var e=0;ea))throw Error(d(301));a+=1,ad=af=null,t.updateQueue=null,au.current=aH,e=n(r,l)}while(ah)}if(au.current=aB,t=null!==af&&null!==af.next,as=0,ad=af=ac=null,ap=!1,t)throw Error(d(300));return e}function ay(){var e={memoizedState:null,baseState:null,baseQueue:null,queue:null,next:null};return null===ad?ac.memoizedState=ad=e:ad=ad.next=e,ad}function ab(){if(null===af){var e=ac.alternate;e=null!==e?e.memoizedState:null}else e=af.next;var t=null===ad?ac.memoizedState:ad.next;if(null!==t)ad=t,af=e;else{if(null===e)throw Error(d(310));e={memoizedState:(af=e).memoizedState,baseState:af.baseState,baseQueue:af.baseQueue,queue:af.queue,next:null},null===ad?ac.memoizedState=ad=e:ad=ad.next=e}return ad}function aw(e,t){return"function"==typeof t?t(e):t}function ak(e){var t=ab(),n=t.queue;if(null===n)throw Error(d(311));n.lastRenderedReducer=e;var r=af,l=r.baseQueue,a=n.pending;if(null!==a){if(null!==l){var o=l.next;l.next=a.next,a.next=o}r.baseQueue=l=a,n.pending=null}if(null!==l){l=l.next,r=r.baseState;var u=o=a=null,i=l;do{var s=i.lane;if((as&s)===s)null!==u&&(u=u.next={lane:0,action:i.action,eagerReducer:i.eagerReducer,eagerState:i.eagerState,next:null}),r=i.eagerReducer===e?i.eagerState:e(r,i.action);else{var c={lane:s,action:i.action,eagerReducer:i.eagerReducer,eagerState:i.eagerState,next:null};null===u?(o=u=c,a=r):u=u.next=c,ac.lanes|=s,oM|=s}i=i.next}while(null!==i&&i!==l);null===u?a=r:u.next=o,nZ(r,t.memoizedState)||(aq=!0),t.memoizedState=r,t.baseState=a,t.baseQueue=u,n.lastRenderedState=r}return[t.memoizedState,n.dispatch]}function aE(e){var t=ab(),n=t.queue;if(null===n)throw Error(d(311));n.lastRenderedReducer=e;var r=n.dispatch,l=n.pending,a=t.memoizedState;if(null!==l){n.pending=null;var o=l=l.next;do a=e(a,o.action),o=o.next;while(o!==l);nZ(a,t.memoizedState)||(aq=!0),t.memoizedState=a,null===t.baseQueue&&(t.baseState=a),n.lastRenderedState=a}return[a,r]}function aS(e,t,n){var r=t._getVersion;r=r(t._source);var l=t._workInProgressVersionPrimary;if(null!==l?e=l===r:(e=(as&(e=e.mutableReadLanes))===e)&&(t._workInProgressVersionPrimary=r,aa.push(t)),e)return n(t._source);throw aa.push(t),Error(d(350))}function a_(e,t,n,r){var l=oC;if(null===l)throw Error(d(349));var a=t._getVersion,o=a(t._source),u=au.current,i=u.useState(function(){return aS(l,t,n)}),s=i[1],c=i[0];i=ad;var f=e.memoizedState,p=f.refs,h=p.getSnapshot,m=f.source;f=f.subscribe;var g=ac;return e.memoizedState={refs:p,source:t,subscribe:r},u.useEffect(function(){p.getSnapshot=n,p.setSnapshot=s;var e=a(t._source);if(!nZ(o,e)){e=n(t._source),nZ(c,e)||(s(e),e=o6(g),l.mutableReadLanes|=e&l.pendingLanes),e=l.mutableReadLanes,l.entangledLanes|=e;for(var r=l.entanglements,u=e;0n?98:n,function(){e(!0)}),lp(97",e=e.removeChild(e.firstChild)):"string"==typeof r.is?e=f.createElement(n,{is:r.is}):(e=f.createElement(n),"select"===n&&(f=e,r.multiple?f.multiple=!0:r.size&&(f.size=r.size))):e=f.createElementNS(e,n),e[rT]=t,e[rL]=r,l(e,t,!1,!1),t.stateNode=e,f=eL(n,r),n){case"dialog":ru("cancel",e),ru("close",e),i=r;break;case"iframe":case"object":case"embed":ru("load",e),i=r;break;case"video":case"audio":for(i=0;ioA&&(t.flags|=64,s=!0,ot(r,!1),t.lanes=33554432)}}else{if(!s){if(null!==(e=l6(f))){if(t.flags|=64,s=!0,null!==(n=e.updateQueue)&&(t.updateQueue=n,t.flags|=4),ot(r,!0),null===r.tail&&"hidden"===r.tailMode&&!f.alternate&&!l5)return null!==(t=t.lastEffect=r.lastEffect)&&(t.nextEffect=null),null}else 2*lc()-r.renderingStartTime>oA&&1073741824!==n&&(t.flags|=64,s=!0,ot(r,!1),t.lanes=33554432)}r.isBackwards?(f.sibling=t.child,t.child=f):(null!==(n=r.last)?n.sibling=f:t.child=f,r.last=f)}return null!==r.tail?(n=r.tail,r.rendering=n,r.tail=n.sibling,r.lastEffect=t.lastEffect,r.renderingStartTime=lc(),n.sibling=null,t=l4.current,rB(l4,s?1&t|2:1&t),n):null;case 23:case 24:return ua(),null!==e&&null!==e.memoizedState!=(null!==t.memoizedState)&&"unstable-defer-without-hiding"!==r.mode&&(t.flags|=4),null}throw Error(d(156,t.tag))}function or(e){switch(e.tag){case 1:rK(e.type)&&rY();var t=e.flags;return 4096&t?(e.flags=-4097&t|64,e):null;case 3:if(l1(),rj(rH),rj(rW),ao(),0!=(64&(t=e.flags)))throw Error(d(285));return e.flags=-4097&t|64,e;case 5:return l3(e),null;case 13:return rj(l4),4096&(t=e.flags)?(e.flags=-4097&t|64,e):null;case 19:return rj(l4),null;case 4:return l1(),null;case 10:return l_(e),null;case 23:case 24:return ua(),null;default:return null}}function ol(e,t){try{var n="",r=t;do n+=G(r),r=r.return;while(r);var l=n}catch(a){l="\nError generating stack: "+a.message+"\n"+a.stack}return{value:e,source:t,stack:l}}function oa(e,t){try{console.error(t.value)}catch(n){setTimeout(function(){throw n})}}l=function(e,t){for(var n=t.child;null!==n;){if(5===n.tag||6===n.tag)e.appendChild(n.stateNode);else if(4!==n.tag&&null!==n.child){n.child.return=n,n=n.child;continue}if(n===t)break;for(;null===n.sibling;){if(null===n.return||n.return===t)return;n=n.return}n.sibling.return=n.return,n=n.sibling}},a=function(){},o=function(e,t,n,r){var l=e.memoizedProps;if(l!==r){e=t.stateNode,lJ(lX.current);var a,o=null;switch(n){case"input":l=el(e,l),r=el(e,r),o=[];break;case"option":l=ec(e,l),r=ec(e,r),o=[];break;case"select":l=c({},l,{value:void 0}),r=c({},r,{value:void 0}),o=[];break;case"textarea":l=ed(e,l),r=ed(e,r),o=[];break;default:"function"!=typeof l.onClick&&"function"==typeof r.onClick&&(e.onclick=rv)}for(s in eT(n,r),n=null,l)if(!r.hasOwnProperty(s)&&l.hasOwnProperty(s)&&null!=l[s]){if("style"===s){var u=l[s];for(a in u)u.hasOwnProperty(a)&&(n||(n={}),n[a]="")}else"dangerouslySetInnerHTML"!==s&&"children"!==s&&"suppressContentEditableWarning"!==s&&"suppressHydrationWarning"!==s&&"autoFocus"!==s&&(h.hasOwnProperty(s)?o||(o=[]):(o=o||[]).push(s,null))}for(s in r){var i=r[s];if(u=null!=l?l[s]:void 0,r.hasOwnProperty(s)&&i!==u&&(null!=i||null!=u)){if("style"===s){if(u){for(a in u)!u.hasOwnProperty(a)||i&&i.hasOwnProperty(a)||(n||(n={}),n[a]="");for(a in i)i.hasOwnProperty(a)&&u[a]!==i[a]&&(n||(n={}),n[a]=i[a])}else n||(o||(o=[]),o.push(s,n)),n=i}else"dangerouslySetInnerHTML"===s?(i=i?i.__html:void 0,u=u?u.__html:void 0,null!=i&&u!==i&&(o=o||[]).push(s,i)):"children"===s?"string"!=typeof i&&"number"!=typeof i||(o=o||[]).push(s,""+i):"suppressContentEditableWarning"!==s&&"suppressHydrationWarning"!==s&&(h.hasOwnProperty(s)?(null!=i&&"onScroll"===s&&ru("scroll",e),o||u===i||(o=[])):"object"==typeof i&&null!==i&&i.$$typeof===j?i.toString():(o=o||[]).push(s,i))}}n&&(o=o||[]).push("style",n);var s=o;(t.updateQueue=s)&&(t.flags|=4)}},u=function(e,t,n,r){n!==r&&(t.flags|=4)};var oo="function"==typeof WeakMap?WeakMap:Map;function ou(e,t,n){(n=lz(-1,n)).tag=3,n.payload={element:null};var r=t.value;return n.callback=function(){oB||(oB=!0,o$=r),oa(e,t)},n}function oi(e,t,n){(n=lz(-1,n)).tag=3;var r=e.type.getDerivedStateFromError;if("function"==typeof r){var l=t.value;n.payload=function(){return oa(e,t),r(l)}}var a=e.stateNode;return null!==a&&"function"==typeof a.componentDidCatch&&(n.callback=function(){"function"!=typeof r&&(null===oW?oW=new Set([this]):oW.add(this),oa(e,t));var n=t.stack;this.componentDidCatch(t.value,{componentStack:null!==n?n:""})}),n}var os="function"==typeof WeakSet?WeakSet:Set;function oc(e){var t=e.ref;if(null!==t){if("function"==typeof t)try{t(null)}catch(n){uE(e,n)}else t.current=null}}function of(e,t){switch(t.tag){case 0:case 11:case 15:case 22:case 5:case 6:case 4:case 17:return;case 1:if(256&t.flags&&null!==e){var n=e.memoizedProps,r=e.memoizedState;t=(e=t.stateNode).getSnapshotBeforeUpdate(t.elementType===t.type?n:ly(t.type,n),r),e.__reactInternalSnapshotBeforeUpdate=t}return;case 3:256&t.flags&&r_(t.stateNode.containerInfo);return}throw Error(d(163))}function od(e,t,n){switch(n.tag){case 0:case 11:case 15:case 22:if(null!==(t=null!==(t=n.updateQueue)?t.lastEffect:null)){e=t=t.next;do{if(3==(3&e.tag)){var r=e.create;e.destroy=r()}e=e.next}while(e!==t)}if(null!==(t=null!==(t=n.updateQueue)?t.lastEffect:null)){e=t=t.next;do{var l=e;r=l.next,0!=(4&(l=l.tag))&&0!=(1&l)&&(ub(n,e),uy(n,e)),e=r}while(e!==t)}return;case 1:e=n.stateNode,4&n.flags&&(null===t?e.componentDidMount():(r=n.elementType===n.type?t.memoizedProps:ly(n.type,t.memoizedProps),e.componentDidUpdate(r,t.memoizedState,e.__reactInternalSnapshotBeforeUpdate))),null!==(t=n.updateQueue)&&lF(n,t,e);return;case 3:if(null!==(t=n.updateQueue)){if(e=null,null!==n.child)switch(n.child.tag){case 5:case 1:e=n.child.stateNode}lF(n,t,e)}return;case 5:e=n.stateNode,null===t&&4&n.flags&&rw(n.type,n.memoizedProps)&&e.focus();return;case 6:case 4:case 12:case 19:case 17:case 20:case 21:case 23:case 24:return;case 13:null===n.memoizedState&&null!==(n=n.alternate)&&null!==(n=n.memoizedState)&&null!==(n=n.dehydrated)&&ty(n);return}throw Error(d(163))}function op(e,t){for(var n=e;;){if(5===n.tag){var r=n.stateNode;if(t)"function"==typeof(r=r.style).setProperty?r.setProperty("display","none","important"):r.display="none";else{r=n.stateNode;var l=n.memoizedProps.style;l=null!=l&&l.hasOwnProperty("display")?l.display:null,r.style.display=eC("display",l)}}else if(6===n.tag)n.stateNode.nodeValue=t?"":n.memoizedProps;else if((23!==n.tag&&24!==n.tag||null===n.memoizedState||n===e)&&null!==n.child){n.child.return=n,n=n.child;continue}if(n===e)break;for(;null===n.sibling;){if(null===n.return||n.return===e)return;n=n.return}n.sibling.return=n.return,n=n.sibling}}function oh(e,t){if(r1&&"function"==typeof r1.onCommitFiberUnmount)try{r1.onCommitFiberUnmount(r0,t)}catch(n){}switch(t.tag){case 0:case 11:case 14:case 15:case 22:if(null!==(e=t.updateQueue)&&null!==(e=e.lastEffect)){var r=e=e.next;do{var l=r,a=l.destroy;if(l=l.tag,void 0!==a){if(0!=(4&l))ub(t,r);else{l=t;try{a()}catch(o){uE(l,o)}}}r=r.next}while(r!==e)}break;case 1:if(oc(t),"function"==typeof(e=t.stateNode).componentWillUnmount)try{e.props=t.memoizedProps,e.state=t.memoizedState,e.componentWillUnmount()}catch(u){uE(t,u)}break;case 5:oc(t);break;case 4:oy(e,t)}}function om(e){e.alternate=null,e.child=null,e.dependencies=null,e.firstEffect=null,e.lastEffect=null,e.memoizedProps=null,e.memoizedState=null,e.pendingProps=null,e.return=null,e.updateQueue=null}function og(e){return 5===e.tag||3===e.tag||4===e.tag}function ov(e){a:{for(var t=e.return;null!==t;){if(og(t))break a;t=t.return}throw Error(d(160))}var n=t;switch(t=n.stateNode,n.tag){case 5:var r=!1;break;case 3:case 4:t=t.containerInfo,r=!0;break;default:throw Error(d(161))}16&n.flags&&(eS(t,""),n.flags&=-17);a:b:for(n=e;;){for(;null===n.sibling;){if(null===n.return||og(n.return)){n=null;break a}n=n.return}for(n.sibling.return=n.return,n=n.sibling;5!==n.tag&&6!==n.tag&&18!==n.tag;){if(2&n.flags||null===n.child||4===n.tag)continue b;n.child.return=n,n=n.child}if(!(2&n.flags)){n=n.stateNode;break a}}r?function e(t,n,r){var l=t.tag,a=5===l||6===l;if(a)t=a?t.stateNode:t.stateNode.instance,n?8===r.nodeType?r.parentNode.insertBefore(t,n):r.insertBefore(t,n):(8===r.nodeType?(n=r.parentNode).insertBefore(t,r):(n=r).appendChild(t),null!=(r=r._reactRootContainer)||null!==n.onclick||(n.onclick=rv));else if(4!==l&&null!==(t=t.child))for(e(t,n,r),t=t.sibling;null!==t;)e(t,n,r),t=t.sibling}(e,n,t):function e(t,n,r){var l=t.tag,a=5===l||6===l;if(a)t=a?t.stateNode:t.stateNode.instance,n?r.insertBefore(t,n):r.appendChild(t);else if(4!==l&&null!==(t=t.child))for(e(t,n,r),t=t.sibling;null!==t;)e(t,n,r),t=t.sibling}(e,n,t)}function oy(e,t){for(var n,r,l=t,a=!1;;){if(!a){a=l.return;a:for(;;){if(null===a)throw Error(d(160));switch(n=a.stateNode,a.tag){case 5:r=!1;break a;case 3:case 4:n=n.containerInfo,r=!0;break a}a=a.return}a=!0}if(5===l.tag||6===l.tag){a:for(var o=e,u=l,i=u;;)if(oh(o,i),null!==i.child&&4!==i.tag)i.child.return=i,i=i.child;else{if(i===u)break a;for(;null===i.sibling;){if(null===i.return||i.return===u)break a;i=i.return}i.sibling.return=i.return,i=i.sibling}r?(o=n,u=l.stateNode,8===o.nodeType?o.parentNode.removeChild(u):o.removeChild(u)):n.removeChild(l.stateNode)}else if(4===l.tag){if(null!==l.child){n=l.stateNode.containerInfo,r=!0,l.child.return=l,l=l.child;continue}}else if(oh(e,l),null!==l.child){l.child.return=l,l=l.child;continue}if(l===t)break;for(;null===l.sibling;){if(null===l.return||l.return===t)return;4===(l=l.return).tag&&(a=!1)}l.sibling.return=l.return,l=l.sibling}}function ob(e,t){switch(t.tag){case 0:case 11:case 14:case 15:case 22:var n=t.updateQueue;if(null!==(n=null!==n?n.lastEffect:null)){var r=n=n.next;do 3==(3&r.tag)&&(e=r.destroy,r.destroy=void 0,void 0!==e&&e()),r=r.next;while(r!==n)}return;case 1:case 12:case 17:return;case 5:if(null!=(n=t.stateNode)){r=t.memoizedProps;var l=null!==e?e.memoizedProps:r;e=t.type;var a=t.updateQueue;if(t.updateQueue=null,null!==a){for(n[rL]=r,"input"===e&&"radio"===r.type&&null!=r.name&&eo(n,r),eL(e,l),t=eL(e,r),l=0;ll&&(l=u),n&=~a}if(n=l,10<(n=(120>(n=lc()-n)?120:480>n?480:1080>n?1080:1920>n?1920:3e3>n?3e3:4320>n?4320:1960*oE(n/1960))-n)){e.timeoutHandle=rE(uh.bind(null,e),n);break}uh(e);break;default:throw Error(d(329))}}return o5(e,lc()),e.callbackNode===t?o7.bind(null,e):null}function ue(e,t){for(t&=~oI,t&=~oF,e.suspendedLanes|=t,e.pingedLanes&=~t,e=e.expirationTimes;0 component higher in the tree to provide a loading indicator or placeholder to display.")}5!==oz&&(oz=2),i=ol(i,u),p=o;do{switch(p.tag){case 3:a=i,p.flags|=4096,t&=-t,p.lanes|=t;var k=ou(p,a,t);lR(p,k);break a;case 1:a=i;var E=p.type,S=p.stateNode;if(0==(64&p.flags)&&("function"==typeof E.getDerivedStateFromError||null!==S&&"function"==typeof S.componentDidCatch&&(null===oW||!oW.has(S)))){p.flags|=4096,t&=-t,p.lanes|=t;var _=oi(p,a,t);lR(p,_);break a}}p=p.return}while(null!==p)}up(n)}catch(x){t=x,oP===n&&null!==n&&(oP=n=n.return);continue}break}}function ui(){var e=oS.current;return oS.current=aB,null===e?aB:e}function us(e,t){var n=ox;ox|=16;var r=ui();for(oC===e&&oN===t||uo(e,t);;)try{uc();break}catch(l){uu(e,l)}if(lS(),ox=n,oS.current=r,null!==oP)throw Error(d(261));return oC=null,oN=0,oz}function uc(){for(;null!==oP;)ud(oP)}function uf(){for(;null!==oP&&!r6();)ud(oP)}function ud(e){var t=i(e.alternate,e,oT);e.memoizedProps=e.pendingProps,null===t?up(e):oP=t,o_.current=null}function up(e){var t=e;do{var n=t.alternate;if(e=t.return,0==(2048&t.flags)){if(null!==(n=on(n,t,oT))){oP=n;return}if(24!==(n=t).tag&&23!==n.tag||null===n.memoizedState||0!=(1073741824&oT)||0==(4&n.mode)){for(var r=0,l=n.child;null!==l;)r|=l.lanes|l.childLanes,l=l.sibling;n.childLanes=r}null!==e&&0==(2048&e.flags)&&(null===e.firstEffect&&(e.firstEffect=t.firstEffect),null!==t.lastEffect&&(null!==e.lastEffect&&(e.lastEffect.nextEffect=t.firstEffect),e.lastEffect=t.lastEffect),1o&&(u=o,o=_,_=u),u=n2(k,_),a=n2(k,o),u&&a&&(1!==S.rangeCount||S.anchorNode!==u.node||S.anchorOffset!==u.offset||S.focusNode!==a.node||S.focusOffset!==a.offset)&&((E=E.createRange()).setStart(u.node,u.offset),S.removeAllRanges(),_>o?(S.addRange(E),S.extend(a.node,a.offset)):(E.setEnd(a.node,a.offset),S.addRange(E))))),E=[],S=k;S=S.parentNode;)1===S.nodeType&&E.push({element:S,left:S.scrollLeft,top:S.scrollTop});for("function"==typeof k.focus&&k.focus(),k=0;klc()-oU?uo(e,0):oI|=n),o5(e,t)}function u_(e,t){var n,r=e.stateNode;null!==r&&r.delete(t),0==(t=0)&&(0==(2&(t=e.mode))?t=1:0==(4&t)?t=99===lf()?1:2:(0===o0&&(o0=oR),0==(t=(n=62914560&~o0)&-n)&&(t=4194304))),r=o4(),null!==(e=o8(e,t))&&(tD(e,t,r),o5(e,r))}function ux(e,t,n,r){this.tag=e,this.key=n,this.sibling=this.child=this.return=this.stateNode=this.type=this.elementType=null,this.index=0,this.ref=null,this.pendingProps=t,this.dependencies=this.memoizedState=this.updateQueue=this.memoizedProps=null,this.mode=r,this.flags=0,this.lastEffect=this.firstEffect=this.nextEffect=null,this.childLanes=this.lanes=0,this.alternate=null}function uC(e,t,n,r){return new ux(e,t,n,r)}function uP(e){return!(!(e=e.prototype)||!e.isReactComponent)}function uN(e,t){var n=e.alternate;return null===n?((n=uC(e.tag,t,e.key,e.mode)).elementType=e.elementType,n.type=e.type,n.stateNode=e.stateNode,n.alternate=e,e.alternate=n):(n.pendingProps=t,n.type=e.type,n.flags=0,n.nextEffect=null,n.firstEffect=null,n.lastEffect=null),n.childLanes=e.childLanes,n.lanes=e.lanes,n.child=e.child,n.memoizedProps=e.memoizedProps,n.memoizedState=e.memoizedState,n.updateQueue=e.updateQueue,t=e.dependencies,n.dependencies=null===t?null:{lanes:t.lanes,firstContext:t.firstContext},n.sibling=e.sibling,n.index=e.index,n.ref=e.ref,n}function uT(e,t,n,r,l,a){var o=2;if(r=e,"function"==typeof e)uP(e)&&(o=1);else if("string"==typeof e)o=5;else a:switch(e){case L:return uL(n.children,l,a,t);case B:o=8,l|=16;break;case z:o=8,l|=1;break;case O:return(e=uC(12,n,t,8|l)).elementType=O,e.type=O,e.lanes=a,e;case I:return(e=uC(13,n,t,l)).type=I,e.elementType=I,e.lanes=a,e;case D:return(e=uC(19,n,t,l)).elementType=D,e.lanes=a,e;case $:return uz(n,l,a,t);case W:return(e=uC(24,n,t,l)).elementType=W,e.lanes=a,e;default:if("object"==typeof e&&null!==e)switch(e.$$typeof){case R:o=10;break a;case M:o=9;break a;case F:o=11;break a;case U:o=14;break a;case A:o=16,r=null;break a;case V:o=22;break a}throw Error(d(130,null==e?e:typeof e,""))}return(t=uC(o,n,t,l)).elementType=e,t.type=r,t.lanes=a,t}function uL(e,t,n,r){return(e=uC(7,e,r,t)).lanes=n,e}function uz(e,t,n,r){return(e=uC(23,e,r,t)).elementType=$,e.lanes=n,e}function uO(e,t,n){return(e=uC(6,e,null,t)).lanes=n,e}function uR(e,t,n){return(t=uC(4,null!==e.children?e.children:[],e.key,t)).lanes=n,t.stateNode={containerInfo:e.containerInfo,pendingChildren:null,implementation:e.implementation},t}function uM(e,t,n){this.tag=t,this.containerInfo=e,this.finishedWork=this.pingCache=this.current=this.pendingChildren=null,this.timeoutHandle=-1,this.pendingContext=this.context=null,this.hydrate=n,this.callbackNode=null,this.callbackPriority=0,this.eventTimes=tI(0),this.expirationTimes=tI(-1),this.entangledLanes=this.finishedLanes=this.mutableReadLanes=this.expiredLanes=this.pingedLanes=this.suspendedLanes=this.pendingLanes=0,this.entanglements=tI(0),this.mutableSourceEagerHydrationData=null}function uF(e,t,n,r){var l=t.current,a=o4(),o=o6(l);a:if(n){n=n._reactInternals;b:{if(e2(n)!==n||1!==n.tag)throw Error(d(170));var u=n;do{switch(u.tag){case 3:u=u.stateNode.context;break b;case 1:if(rK(u.type)){u=u.stateNode.__reactInternalMemoizedMergedChildContext;break b}}u=u.return}while(null!==u);throw Error(d(171))}if(1===n.tag){var i=n.type;if(rK(i)){n=rG(n,i,u);break a}}n=u}else n=r$;return null===t.context?t.context=n:t.pendingContext=n,(t=lz(a,o)).payload={element:e},null!==(r=void 0===r?null:r)&&(t.callback=r),lO(l,t),o9(l,o,a),o}function uI(e){return(e=e.current).child?(e.child.tag,e.child.stateNode):null}function uD(e,t){if(null!==(e=e.memoizedState)&&null!==e.dehydrated){var n=e.retryLane;e.retryLane=0!==n&&n=b},a=function(){},t.unstable_forceFrameRate=function(e){0>e||125>>1,l=e[r];if(void 0!==l&&0x(o,n))void 0!==i&&0>x(i,o)?(e[r]=i,e[u]=n,r=u):(e[r]=o,e[a]=n,r=a);else if(void 0!==i&&0>x(i,n))e[r]=i,e[u]=n,r=u;else break a}}return t}return null}function x(e,t){var n=e.sortIndex-t.sortIndex;return 0!==n?n:e.id-t.id}var C=[],P=[],N=1,T=null,L=3,z=!1,O=!1,R=!1;function M(e){for(var t=S(P);null!==t;){if(null===t.callback)_(P);else if(t.startTime<=e)_(P),t.sortIndex=t.expirationTime,E(C,t);else break;t=S(P)}}function F(e){if(R=!1,M(e),!O){if(null!==S(C))O=!0,n(I);else{var t=S(P);null!==t&&r(F,t.startTime-e)}}}function I(e,n){O=!1,R&&(R=!1,l()),z=!0;var a=L;try{for(M(n),T=S(C);null!==T&&(!(T.expirationTime>n)||e&&!t.unstable_shouldYield());){var o=T.callback;if("function"==typeof o){T.callback=null,L=T.priorityLevel;var u=o(T.expirationTime<=n);n=t.unstable_now(),"function"==typeof u?T.callback=u:T===S(C)&&_(C),M(n)}else _(C);T=S(C)}if(null!==T)var i=!0;else{var s=S(P);null!==s&&r(F,s.startTime-n),i=!1}return i}finally{T=null,L=a,z=!1}}var D=a;t.unstable_IdlePriority=5,t.unstable_ImmediatePriority=1,t.unstable_LowPriority=4,t.unstable_NormalPriority=3,t.unstable_Profiling=null,t.unstable_UserBlockingPriority=2,t.unstable_cancelCallback=function(e){e.callback=null},t.unstable_continueExecution=function(){O||z||(O=!0,n(I))},t.unstable_getCurrentPriorityLevel=function(){return L},t.unstable_getFirstCallbackNode=function(){return S(C)},t.unstable_next=function(e){switch(L){case 1:case 2:case 3:var t=3;break;default:t=L}var n=L;L=t;try{return e()}finally{L=n}},t.unstable_pauseExecution=function(){},t.unstable_requestPaint=D,t.unstable_runWithPriority=function(e,t){switch(e){case 1:case 2:case 3:case 4:case 5:break;default:e=3}var n=L;L=e;try{return t()}finally{L=n}},t.unstable_scheduleCallback=function(e,a,o){var u=t.unstable_now();switch(o="object"==typeof o&&null!==o&&"number"==typeof(o=o.delay)&&0u?(e.sortIndex=o,E(P,e),null===S(C)&&e===S(P)&&(R?l():R=!0,r(F,o-u))):(e.sortIndex=i,E(C,e),O||z||(O=!0,n(I))),e},t.unstable_wrapCallback=function(e){var t=L;return function(){var n=L;L=t;try{return e.apply(this,arguments)}finally{L=n}}}},63840:function(e,t,n){e.exports=n(60053)}}]);
\ No newline at end of file
diff --git a/_next/static/chunks/main-86951ffaf72f5ad0.js b/_next/static/chunks/main-86951ffaf72f5ad0.js
new file mode 100644
index 000000000000..d7b1406e97b6
--- /dev/null
+++ b/_next/static/chunks/main-86951ffaf72f5ad0.js
@@ -0,0 +1 @@
+(self.webpackChunk_N_E=self.webpackChunk_N_E||[]).push([[179],{25300:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.default=function(e,t){(null==t||t>e.length)&&(t=e.length);for(var r=0,n=Array(t);r=0||(a[r]=e[r]);return a}},29241:function(e,t,r){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.default=function(e,t){return t&&("object"===a.default(t)||"function"==typeof t)?t:n.default(e)};var n=o(r(48646)),a=o(r(45753));function o(e){return e&&e.__esModule?e:{default:e}}},35814:function(e,t){"use strict";function r(e,t){return n(e,t)}function n(e,t){return(n=Object.setPrototypeOf||function(e,t){return e.__proto__=t,e})(e,t)}Object.defineProperty(t,"__esModule",{value:!0}),t.default=r},94941:function(e,t,r){"use strict";t.Z=function(e,t){return n.default(e)||a.default(e,t)||i.default(e,t)||o.default()};var n=u(r(46564)),a=u(r(21301)),o=u(r(16936)),i=u(r(72149));function u(e){return e&&e.__esModule?e:{default:e}}},53929:function(e,t,r){"use strict";t.Z=function(e){return n.default(e)||a.default(e)||i.default(e)||o.default()};var n=u(r(82568)),a=u(r(21301)),o=u(r(34162)),i=u(r(72149));function u(e){return e&&e.__esModule?e:{default:e}}},32401:function(e,t,r){"use strict";Object.defineProperty(t,"Z",{enumerable:!0,get:function(){return n.__generator}});var n=r(20414)},45753:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.default=function(e){return e&&e.constructor===Symbol?"symbol":typeof e}},72149:function(e,t,r){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.default=function(e,t){if(e){if("string"==typeof e)return a.default(e,t);var r=Object.prototype.toString.call(e).slice(8,-1);if("Object"===r&&e.constructor&&(r=e.constructor.name),"Map"===r||"Set"===r)return Array.from(r);if("Arguments"===r||/^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(r))return a.default(e,t)}};var n,a=(n=r(25300),n&&n.__esModule?n:{default:n})},79968:function(e,t,r){"use strict";t.Z=u;var n=c(r(5317)),a=c(r(4499)),o=c(r(20898)),i=c(r(35814));function u(e){return l(e)}function c(e){return e&&e.__esModule?e:{default:e}}function l(e){var t="function"==typeof Map?new Map:void 0;return(l=function(e){if(null===e||!a.default(e))return e;if("function"!=typeof e)throw TypeError("Super expression must either be null or a function");if(void 0!==t){if(t.has(e))return t.get(e);t.set(e,r)}function r(){return n.default(e,arguments,o.default(this).constructor)}return r.prototype=Object.create(e.prototype,{constructor:{value:r,enumerable:!1,writable:!0,configurable:!0}}),i.default(r,e)})(e)}},20414:function(e,t,r){"use strict";r.r(t),r.d(t,{__assign:function(){return o},__asyncDelegator:function(){return P},__asyncGenerator:function(){return b},__asyncValues:function(){return w},__await:function(){return _},__awaiter:function(){return s},__classPrivateFieldGet:function(){return x},__classPrivateFieldIn:function(){return C},__classPrivateFieldSet:function(){return M},__createBinding:function(){return d},__decorate:function(){return u},__exportStar:function(){return p},__extends:function(){return a},__generator:function(){return f},__importDefault:function(){return E},__importStar:function(){return j},__makeTemplateObject:function(){return S},__metadata:function(){return l},__param:function(){return c},__read:function(){return v},__rest:function(){return i},__spread:function(){return m},__spreadArray:function(){return g},__spreadArrays:function(){return y},__values:function(){return h}});var n=function(e,t){return(n=Object.setPrototypeOf||({__proto__:[]})instanceof Array&&function(e,t){e.__proto__=t}||function(e,t){for(var r in t)Object.prototype.hasOwnProperty.call(t,r)&&(e[r]=t[r])})(e,t)};function a(e,t){if("function"!=typeof t&&null!==t)throw TypeError("Class extends value "+String(t)+" is not a constructor or null");function r(){this.constructor=e}n(e,t),e.prototype=null===t?Object.create(t):(r.prototype=t.prototype,new r)}var o=function(){return(o=Object.assign||function(e){for(var t,r=1,n=arguments.length;rt.indexOf(n)&&(r[n]=e[n]);if(null!=e&&"function"==typeof Object.getOwnPropertySymbols)for(var a=0,n=Object.getOwnPropertySymbols(e);at.indexOf(n[a])&&Object.prototype.propertyIsEnumerable.call(e,n[a])&&(r[n[a]]=e[n[a]]);return r}function u(e,t,r,n){var a,o=arguments.length,i=o<3?t:null===n?n=Object.getOwnPropertyDescriptor(t,r):n;if("object"==typeof Reflect&&"function"==typeof Reflect.decorate)i=Reflect.decorate(e,t,r,n);else for(var u=e.length-1;u>=0;u--)(a=e[u])&&(i=(o<3?a(i):o>3?a(t,r,i):a(t,r))||i);return o>3&&i&&Object.defineProperty(t,r,i),i}function c(e,t){return function(r,n){t(r,n,e)}}function l(e,t){if("object"==typeof Reflect&&"function"==typeof Reflect.metadata)return Reflect.metadata(e,t)}function s(e,t,r,n){return new(r||(r=Promise))(function(a,o){function i(e){try{c(n.next(e))}catch(t){o(t)}}function u(e){try{c(n.throw(e))}catch(t){o(t)}}function c(e){var t;e.done?a(e.value):((t=e.value)instanceof r?t:new r(function(e){e(t)})).then(i,u)}c((n=n.apply(e,t||[])).next())})}function f(e,t){var r,n,a,o,i={label:0,sent:function(){if(1&a[0])throw a[1];return a[1]},trys:[],ops:[]};return o={next:u(0),throw:u(1),return:u(2)},"function"==typeof Symbol&&(o[Symbol.iterator]=function(){return this}),o;function u(o){return function(u){return function(o){if(r)throw TypeError("Generator is already executing.");for(;i;)try{if(r=1,n&&(a=2&o[0]?n.return:o[0]?n.throw||((a=n.return)&&a.call(n),0):n.next)&&!(a=a.call(n,o[1])).done)return a;switch(n=0,a&&(o=[2&o[0],a.value]),o[0]){case 0:case 1:a=o;break;case 4:return i.label++,{value:o[1],done:!1};case 5:i.label++,n=o[1],o=[0];continue;case 7:o=i.ops.pop(),i.trys.pop();continue;default:if(!(a=(a=i.trys).length>0&&a[a.length-1])&&(6===o[0]||2===o[0])){i=0;continue}if(3===o[0]&&(!a||o[1]>a[0]&&o[1]=e.length&&(e=void 0),{value:e&&e[n++],done:!e}}};throw TypeError(t?"Object is not iterable.":"Symbol.iterator is not defined.")}function v(e,t){var r="function"==typeof Symbol&&e[Symbol.iterator];if(!r)return e;var n,a,o=r.call(e),i=[];try{for(;(void 0===t||t-- >0)&&!(n=o.next()).done;)i.push(n.value)}catch(u){a={error:u}}finally{try{n&&!n.done&&(r=o.return)&&r.call(o)}finally{if(a)throw a.error}}return i}function m(){for(var e=[],t=0;t1||u(e,t)})})}function u(e,t){try{var r;r=a[e](t),r.value instanceof _?Promise.resolve(r.value.v).then(c,l):s(o[0][2],r)}catch(n){s(o[0][3],n)}}function c(e){u("next",e)}function l(e){u("throw",e)}function s(e,t){e(t),o.shift(),o.length&&u(o[0][0],o[0][1])}}function P(e){var t,r;return t={},n("next"),n("throw",function(e){throw e}),n("return"),t[Symbol.iterator]=function(){return this},t;function n(n,a){t[n]=e[n]?function(t){return(r=!r)?{value:_(e[n](t)),done:"return"===n}:a?a(t):t}:a}}function w(e){if(!Symbol.asyncIterator)throw TypeError("Symbol.asyncIterator is not defined.");var t,r=e[Symbol.asyncIterator];return r?r.call(e):(e=h(e),t={},n("next"),n("throw"),n("return"),t[Symbol.asyncIterator]=function(){return this},t);function n(r){t[r]=e[r]&&function(t){return new Promise(function(n,a){!function(e,t,r,n){Promise.resolve(n).then(function(t){e({value:t,done:r})},t)}(n,a,(t=e[r](t)).done,t.value)})}}}function S(e,t){return Object.defineProperty?Object.defineProperty(e,"raw",{value:t}):e.raw=t,e}var O=Object.create?function(e,t){Object.defineProperty(e,"default",{enumerable:!0,value:t})}:function(e,t){e.default=t};function j(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var r in e)"default"!==r&&Object.prototype.hasOwnProperty.call(e,r)&&d(t,e,r);return O(t,e),t}function E(e){return e&&e.__esModule?e:{default:e}}function x(e,t,r,n){if("a"===r&&!n)throw TypeError("Private accessor was defined without a getter");if("function"==typeof t?e!==t||!n:!t.has(e))throw TypeError("Cannot read private member from an object whose class did not declare it");return"m"===r?n:"a"===r?n.call(e):n?n.value:t.get(e)}function M(e,t,r,n,a){if("m"===n)throw TypeError("Private method is not writable");if("a"===n&&!a)throw TypeError("Private accessor was defined without a setter");if("function"==typeof t?e!==t||!a:!t.has(e))throw TypeError("Cannot write private member to an object whose class did not declare it");return"a"===n?a.call(e,r):a?a.value=r:t.set(e,r),r}function C(e,t){if(null===t||"object"!=typeof t&&"function"!=typeof t)throw TypeError("Cannot use 'in' operator on non-object");return"function"==typeof e?t===e:e.has(t)}},96086:function(e){"use strict";var t=Object.assign.bind(Object);e.exports=t,e.exports.default=e.exports},40037:function(){"trimStart"in String.prototype||(String.prototype.trimStart=String.prototype.trimLeft),"trimEnd"in String.prototype||(String.prototype.trimEnd=String.prototype.trimRight),"description"in Symbol.prototype||Object.defineProperty(Symbol.prototype,"description",{configurable:!0,get:function(){var e=/\((.*)\)/.exec(this.toString());return e?e[1]:void 0}}),Array.prototype.flat||(Array.prototype.flat=function(e,t){return t=this.concat.apply([],this),e>1&&t.some(Array.isArray)?t.flat(e-1):t},Array.prototype.flatMap=function(e,t){return this.map(e,t).flat()}),Promise.prototype.finally||(Promise.prototype.finally=function(e){if("function"!=typeof e)return this.then(e,e);var t=this.constructor||Promise;return this.then(function(r){return t.resolve(e()).then(function(){return r})},function(r){return t.resolve(e()).then(function(){throw r})})}),Object.fromEntries||(Object.fromEntries=function(e){return Array.from(e).reduce(function(e,t){return e[t[0]]=t[1],e},{})})},98684:function(e,t,r){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.addBasePath=function(e,t){return a.normalizePathTrailingSlash(n.addPathPrefix(e,"/dendron-dbgi"))};var n=r(95391),a=r(82392);("function"==typeof t.default||"object"==typeof t.default&&null!==t.default)&&void 0===t.default.__esModule&&(Object.defineProperty(t.default,"__esModule",{value:!0}),Object.assign(t.default,t),e.exports=t.default)},22725:function(e,t,r){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),r(53929).Z,Object.defineProperty(t,"__esModule",{value:!0}),t.addLocale=void 0,r(82392);var n=function(e){for(var t=arguments.length,r=Array(t>1?t-1:0),n=1;n0&&void 0!==s[0]&&s[0],a=JSON.parse(document.getElementById("__NEXT_DATA__").textContent),window.__NEXT_DATA__=a,z=a.defaultLocale,e=a.assetPrefix||"",r.p="".concat(e,"/_next/"),R.setConfig({serverRuntimeConfig:{},publicRuntimeConfig:a.runtimeConfig||{}}),o=A.getURL(),H.hasBasePath(o)&&(o=q.removeBasePath(o)),a.scriptLoader&&(0,r(20699).initScriptLoader)(a.scriptLoader),i=new T.default(a.buildId,e),l=function(e){var t=g(e,2),r=t[0],n=t[1];return i.routeLoader.onEntrypoint(r,n)},window.__NEXT_P&&window.__NEXT_P.map(function(e){return setTimeout(function(){return l(e)},0)}),window.__NEXT_P=[],window.__NEXT_P.push=l,(c=L.default()).getIsSsr=function(){return n.isSsr},u=document.getElementById("__next"),[2,{assetPrefix:e}]})})).apply(this,arguments)}function $(e,t){return O.default.createElement(e,Object.assign({},t))}function X(e){var t=e.children;return O.default.createElement(V,{fn:function(e){return J({App:f,err:e}).catch(function(e){return console.error("Error rendering page: ",e)})}},O.default.createElement(x.RouterContext.Provider,{value:D.makePublicRouterInstance(n)},O.default.createElement(j.HeadManagerContext.Provider,{value:c},O.default.createElement(Z.ImageConfigContext.Provider,{value:{deviceSizes:[640,750,828,1080,1200,1920,2048,3840],imageSizes:[16,32,48,64,96,128,256,384],path:"/dendron-dbgi/_next/image/",loader:"default",dangerouslyAllowSVG:!1,unoptimized:!1}},t))))}var Y=function(e){return function(t){var r=w({},t,{Component:p,err:a.err,router:n});return O.default.createElement(X,null,$(e,r))}};function J(e){var t=e.App,u=e.err;return console.error(u),console.error("A client-side exception has occurred, see here for more info: https://nextjs.org/docs/messages/client-side-exception-occurred"),i.loadPage("/_error").then(function(n){var a=n.page,o=n.styleSheets;return(null==l?void 0:l.Component)===a?Promise.resolve().then(function(){return y(r(89185))}).then(function(n){return Promise.resolve().then(function(){return y(r(46029))}).then(function(r){return t=r.default,e.App=t,n})}).then(function(e){return{ErrorComponent:e.default,styleSheets:[]}}):{ErrorComponent:a,styleSheets:o}}).then(function(r){var i,c=r.ErrorComponent,l=r.styleSheets,s=Y(t),f={Component:c,AppTree:s,router:n,ctx:{err:u,pathname:a.page,query:a.query,asPath:o,AppTree:s}};return Promise.resolve((null==(i=e.props)?void 0:i.err)?e.props:A.loadGetInitialProps(t,f)).then(function(t){return eo(w({},e,{err:u,Component:c,styleSheets:l,props:t}))})})}function Q(e){var t=e.callback;return O.default.useLayoutEffect(function(){return t()},[t]),null}var ee=!0;function et(){["beforeRender","afterHydrate","afterRender","routeChange"].forEach(function(e){return performance.clearMarks(e)})}function er(){A.ST&&(performance.mark("afterHydrate"),performance.measure("Next.js-before-hydration","navigationStart","beforeRender"),performance.measure("Next.js-hydration","beforeRender","afterHydrate"),d&&performance.getEntriesByName("Next.js-hydration").forEach(d),et())}function en(){if(A.ST){performance.mark("afterRender");var e=performance.getEntriesByName("routeChange","mark");e.length&&(performance.measure("Next.js-route-change-to-render",e[0].name,"beforeRender"),performance.measure("Next.js-render","beforeRender","afterRender"),d&&(performance.getEntriesByName("Next.js-render").forEach(d),performance.getEntriesByName("Next.js-route-change-to-render").forEach(d)),et(),["Next.js-route-change-to-render","Next.js-render"].forEach(function(e){return performance.clearMeasures(e)}))}}function ea(e){var t=e.callbacks,r=e.children;return O.default.useLayoutEffect(function(){return t.forEach(function(e){return e()})},[t]),O.default.useEffect(function(){I.default(d)},[]),r}function eo(e){var t,r=function(){if(d&&!h){for(var t=new Set(d.map(function(e){return e.href})),r=W(document.querySelectorAll("style[data-n-href]")),n=r.map(function(e){return e.getAttribute("data-n-href")}),a=0;a0&&void 0!==arguments[0]?arguments[0]:{},t=e.ampFirst,r=e.hybrid,n=e.hasQuery;return void 0!==t&&t||void 0!==r&&r&&void 0!==n&&n}},10489:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.escapeStringRegexp=function(e){return r.test(e)?e.replace(n,"\\$&"):e};var r=/[|\\{}()[\]^$+*?.-]/,n=/[|\\{}()[\]^$+*?.-]/g},8404:function(e,t,r){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.HeadManagerContext=void 0;var n=(0,r(92648).Z)(r(67294)).default.createContext({});t.HeadManagerContext=n},5443:function(e,t,r){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.defaultHead=s,t.default=void 0;var n=r(6495).Z,a=r(92648).Z,o=(0,r(91598).Z)(r(67294)),i=a(r(55188)),u=r(22227),c=r(8404),l=r(17363);function s(){var e=arguments.length>0&&void 0!==arguments[0]&&arguments[0],t=[o.default.createElement("meta",{charSet:"utf-8"})];return e||t.push(o.default.createElement("meta",{name:"viewport",content:"width=device-width"})),t}function f(e,t){return"string"==typeof t||"number"==typeof t?e:t.type===o.default.Fragment?e.concat(o.default.Children.toArray(t.props.children).reduce(function(e,t){return"string"==typeof t||"number"==typeof t?e:e.concat(t)},[])):e.concat(t)}r(63794);var d=["name","httpEquiv","charSet","itemProp"];function p(e,t){var r,a,i,u,c=t.inAmpMode;return e.reduce(f,[]).reverse().concat(s(c).reverse()).filter((r=new Set,a=new Set,i=new Set,u={},function(e){var t=!0,n=!1;if(e.key&&"number"!=typeof e.key&&e.key.indexOf("$")>0){n=!0;var o=e.key.slice(e.key.indexOf("$")+1);r.has(o)?t=!1:r.add(o)}switch(e.type){case"title":case"base":a.has(e.type)?t=!1:a.add(e.type);break;case"meta":for(var c=0,l=d.length;c>>0,1)},emit:function(t){for(var r=arguments.length,a=Array(r>1?r-1:0),o=1;o1&&a.status>=500?e(t,r-1,n):a})})(r,i?3:1,{headers:a?{purpose:"prefetch"}:{},method:null!=(t=null==e?void 0:e.method)?t:"GET"}).then(function(t){return t.ok&&(null==e?void 0:e.method)==="HEAD"?{dataHref:r,response:t,text:"",json:{},cacheKey:f}:t.text().then(function(e){if(!t.ok){if(o&&[301,302,307,308].includes(t.status))return{dataHref:r,response:t,text:e,json:{},cacheKey:f};if(!o&&404===t.status){var n;if(null==(n=X(e))?void 0:n.notFound)return{dataHref:r,json:{notFound:V},response:t,text:e,cacheKey:f}}var a=Error("Failed to load static props");throw i||p.markAssetError(a),a}return{dataHref:r,json:u?X(e):null,response:t,text:e,cacheKey:f}})}).then(function(e){return c&&"no-cache"!==e.response.headers.get("x-middleware-cache")||delete n[f],e}).catch(function(e){throw delete n[f],e})};return s&&c?d({}).then(function(e){return n[f]=Promise.resolve(e),e}):void 0!==n[f]?n[f]:n[f]=d(l?{method:"HEAD"}:{})}function J(){return Math.random().toString(36).slice(2,10)}function Q(e){var t=e.url,r=e.router;if(t===A.addBasePath(M.addLocale(r.asPath,r.locale)))throw Error("Invariant: attempted to hard navigate to the same URL ".concat(t," ").concat(location.href));window.location.href=t}var ee=function(e){var t=e.route,r=e.router,n=!1,a=r.clc=function(){n=!0};return function(){if(n){var e=Error('Abort fetching component for route: "'.concat(t,'"'));throw e.cancelled=!0,e}a===r.clc&&(r.clc=null)}},et=function(){function e(t,r,a,o){var i=o.initialProps,u=o.pageLoader,c=o.App,l=o.wrapApp,s=o.Component,f=o.err,p=o.subscription,h=o.isFallback,v=o.locale,m=(o.locales,o.defaultLocale,o.domainLocales,o.isPreview),y=this;n(this,e),this.sdc={},this.isFirstPopStateEvent=!0,this._key=J(),this.onPopState=function(e){var t,r=y.isFirstPopStateEvent;y.isFirstPopStateEvent=!1;var n=e.state;if(!n){var a=y.pathname,o=y.query;y.changeState("replaceState",E.formatWithValidation({pathname:A.addBasePath(a),query:o}),_.getURL());return}if(n.__NA){window.location.reload();return}if(n.__N&&(!r||y.locale!==n.options.locale||n.as!==y.asPath)){var i=n.url,u=n.as,c=n.options,l=n.key;y._key=l;var s=P.parseRelativeUrl(i).pathname;(!y.isSsr||u!==A.addBasePath(y.asPath)||s!==A.addBasePath(y.pathname))&&(!y._bps||y._bps(n))&&y.change("replaceState",i,u,Object.assign({},c,{shallow:c.shallow&&y._shallow,locale:c.locale||y.defaultLocale,_h:0}),t)}};var g=d.removeTrailingSlash(t);this.components={},"/_error"!==t&&(this.components[g]={Component:s,initial:!0,props:i,err:f,__N_SSG:i&&i.__N_SSG,__N_SSP:i&&i.__N_SSP}),this.components["/_app"]={Component:c,styleSheets:[]},this.events=e.events,this.pageLoader=u;var w=b.isDynamicRoute(t)&&self.__NEXT_DATA__.autoExport;if(this.basePath="/dendron-dbgi",this.sub=p,this.clc=null,this._wrapApp=l,this.isSsr=!0,this.isLocaleDomain=!1,this.isReady=!!(self.__NEXT_DATA__.gssp||self.__NEXT_DATA__.gip||self.__NEXT_DATA__.appGip&&!self.__NEXT_DATA__.gsp||!w&&!self.location.search),this.state={route:g,pathname:t,query:r,asPath:w?t:a,isPreview:!!m,locale:void 0,isFallback:h},this._initialMatchesMiddlewarePromise=Promise.resolve(!1),!a.startsWith("//")){var S={locale:v},O=_.getURL();this._initialMatchesMiddlewarePromise=B({router:this,locale:v,asPath:O}).then(function(e){return S._shouldResolveHref=a!==t,y.changeState("replaceState",e?O:E.formatWithValidation({pathname:A.addBasePath(t),query:r}),O,S),e})}window.addEventListener("popstate",this.onPopState)}return a(e,[{key:"reload",value:function(){window.location.reload()}},{key:"back",value:function(){window.history.back()}},{key:"push",value:function(e,t){var r,n=arguments.length>2&&void 0!==arguments[2]?arguments[2]:{};return e=(r=z(this,e,t)).url,t=r.as,this.change("pushState",e,t,n)}},{key:"replace",value:function(e,t){var r,n=arguments.length>2&&void 0!==arguments[2]?arguments[2]:{};return e=(r=z(this,e,t)).url,t=r.as,this.change("replaceState",e,t,n)}},{key:"change",value:function(t,r,n,a,l){var s=this;return u(function(){var u,f,m,y,g,w,S,L,T,N,Z,q,W,K,$,X,Y,J,ee,et,er,en,ea,eo,ei,eu,ec,el,es,ef,ed,ep,eh,ev,em,ey,eg,e_,eb,eP,ew,eS,eO,ej,eE,ex,eM,eC,eR,eA,ek,eL,eT,eI,eN,eD,eB,eZ,eq,eH;return i(this,function(i){switch(i.label){case 0:if(!U(r))return Q({url:r,router:s}),[2,!1];if(f=(u=a._h)||a._shouldResolveHref||x.parsePath(r).pathname===x.parsePath(n).pathname,m=c({},s.state),y=!0!==s.isReady,s.isReady=!0,g=s.isSsr,u||(s.isSsr=!1),u&&s.clc)return[2,!1];if(w=m.locale,_.ST&&performance.mark("routeChange"),L=void 0!==(S=a.shallow)&&S,N=void 0===(T=a.scroll)||T,Z={shallow:L},s._inFlightRoute&&s.clc&&(g||e.events.emit("routeChangeError",D(),s._inFlightRoute,Z),s.clc(),s.clc=null),n=A.addBasePath(M.addLocale(k.hasBasePath(n)?R.removeBasePath(n):n,a.locale,s.defaultLocale)),q=C.removeLocale(k.hasBasePath(n)?R.removeBasePath(n):n,m.locale),s._inFlightRoute=n,W=w!==m.locale,!(!u&&s.onlyAHashChange(q)&&!W))return[3,5];m.asPath=q,e.events.emit("hashChangeStart",n,Z),s.changeState(t,r,n,c({},a,{scroll:!1})),N&&s.scrollToHash(q),i.label=1;case 1:return i.trys.push([1,3,,4]),[4,s.set(m,s.components[m.route],null)];case 2:return i.sent(),[3,4];case 3:throw K=i.sent(),v.default(K)&&K.cancelled&&e.events.emit("routeChangeError",K,q,Z),K;case 4:return e.events.emit("hashChangeComplete",n,Z),[2,!0];case 5:X=($=P.parseRelativeUrl(r)).pathname,Y=$.query,i.label=6;case 6:return i.trys.push([6,8,,9]),[4,Promise.all([s.pageLoader.getPageList(),p.getClientBuildManifest(),s.pageLoader.getMiddleware()])];case 7:return J=(ee=o.apply(void 0,[i.sent(),2]))[0],ee[1].__rewrites,[3,9];case 8:return i.sent(),Q({url:n,router:s}),[2,!1];case 9:return s.urlIsNew(q)||W||(t="replaceState"),er=n,X=X?d.removeTrailingSlash(R.removeBasePath(X)):X,[4,B({asPath:n,locale:m.locale,router:s})];case 10:if(en=i.sent(),a.shallow&&en&&(X=s.pathname),f&&"/_error"!==X&&(a._shouldResolveHref=!0,$.pathname=G(X,J),$.pathname===X||(X=$.pathname,$.pathname=A.addBasePath(X),en||(r=E.formatWithValidation($)))),!U(n))return Q({url:n,router:s}),[2,!1];if(er=C.removeLocale(R.removeBasePath(er),m.locale),ea=d.removeTrailingSlash(X),eo=!1,b.isDynamicRoute(ea)){if(eu=(ei=P.parseRelativeUrl(er)).pathname,ec=j.getRouteRegex(ea),eo=O.getRouteMatcher(ec)(eu),es=(el=ea===eu)?F(ea,eu,Y):{},eo&&(!el||es.result))el?n=E.formatWithValidation(Object.assign({},ei,{pathname:es.result,query:H(Y,es.params)})):Object.assign(Y,eo);else if((ef=Object.keys(ec.groups).filter(function(e){return!Y[e]})).length>0&&!en)throw Error((el?"The provided `href` (".concat(r,") value is missing query values (").concat(ef.join(", "),") to be interpolated properly. "):"The provided `as` value (".concat(eu,") is incompatible with the `href` value (").concat(ea,"). "))+"Read more: https://nextjs.org/docs/messages/".concat(el?"href-interpolation-failed":"incompatible-href-as"))}u||e.events.emit("routeChangeStart",n,Z),i.label=11;case 11:return i.trys.push([11,21,,22]),[4,s.getRouteInfo({route:ea,pathname:X,query:Y,as:n,resolvedAs:er,routeProps:Z,locale:m.locale,isPreview:m.isPreview,hasMiddleware:en})];case 12:if("route"in(eh=i.sent())&&en&&(ea=X=eh.route||ea,Z.shallow||(Y=Object.assign({},eh.query||{},Y)),ev=k.hasBasePath($.pathname)?R.removeBasePath($.pathname):$.pathname,eo&&X!==ev&&Object.keys(eo).forEach(function(e){eo&&Y[e]===eo[e]&&delete Y[e]}),b.isDynamicRoute(X))&&(ey=!Z.shallow&&eh.resolvedAs?eh.resolvedAs:A.addBasePath(M.addLocale(new URL(n,location.href).pathname,m.locale),!0),k.hasBasePath(ey)&&(ey=R.removeBasePath(ey)),eg=j.getRouteRegex(X),(e_=O.getRouteMatcher(eg)(ey))&&Object.assign(Y,e_)),"type"in eh){if("redirect-internal"===eh.type)return[2,s.change(t,eh.newUrl,eh.newAs,a)];return Q({url:eh.destination,router:s}),[2,new Promise(function(){})]}if(eb=eh.error,eP=eh.props,ew=eh.__N_SSG,eS=eh.__N_SSP,(eO=eh.Component)&&eO.unstable_scriptLoader&&[].concat(eO.unstable_scriptLoader()).forEach(function(e){h.handleClientScriptLoad(e.props)}),!((ew||eS)&&eP))return[3,18];if(eP.pageProps&&eP.pageProps.__N_REDIRECT){if(a.locale=!1,(eE=eP.pageProps.__N_REDIRECT).startsWith("/")&&!1!==eP.pageProps.__N_REDIRECT_BASE_PATH)return(ex=P.parseRelativeUrl(eE)).pathname=G(ex.pathname,J),eC=(eM=z(s,eE,eE)).url,eR=eM.as,[2,s.change(t,eC,eR,a)];return Q({url:eE,router:s}),[2,new Promise(function(){})]}if(m.isPreview=!!eP.__N_PREVIEW,eP.notFound!==V)return[3,18];i.label=13;case 13:return i.trys.push([13,15,,16]),[4,s.fetchComponent("/404")];case 14:return i.sent(),eA="/404",[3,16];case 15:return i.sent(),eA="/_error",[3,16];case 16:return[4,s.getRouteInfo({route:eA,pathname:eA,query:Y,as:n,resolvedAs:er,routeProps:{shallow:!1},locale:m.locale,isPreview:m.isPreview})];case 17:if("type"in(eh=i.sent()))throw Error("Unexpected middleware effect on /404");i.label=18;case 18:if(e.events.emit("beforeHistoryChange",n,Z),s.changeState(t,r,n,a),u&&"/_error"===X&&(null==(ed=self.__NEXT_DATA__.props)?void 0:null==(ep=ed.pageProps)?void 0:ep.statusCode)===500&&(null==eP?void 0:eP.pageProps)&&(eP.pageProps.statusCode=500),eL=a.shallow&&m.route===(null!=(ek=eh.route)?ek:ea),eN=(eI=null!=(eT=a.scroll)?eT:!a._h&&!eL)?{x:0,y:0}:null,eD=c({},m,{route:ea,pathname:X,query:Y,asPath:q,isFallback:!1}),eB=null!=l?l:eN,a._h&&!eB&&!y&&!W&&I.compareRouterStates(eD,s.state))return[3,20];return[4,s.set(eD,eh,eB).catch(function(e){if(e.cancelled)eb=eb||e;else throw e})];case 19:if(i.sent(),eb)throw u||e.events.emit("routeChangeError",eb,q,Z),eb;u||e.events.emit("routeChangeComplete",n,Z),eq=/#.+$/,eI&&eq.test(n)&&s.scrollToHash(n),i.label=20;case 20:return[2,!0];case 21:if(eH=i.sent(),v.default(eH)&&eH.cancelled)return[2,!1];throw eH;case 22:return[2]}})})()}},{key:"changeState",value:function(e,t,r){var n=arguments.length>3&&void 0!==arguments[3]?arguments[3]:{};("pushState"!==e||_.getURL()!==r)&&(this._shallow=n.shallow,window.history[e]({url:t,as:r,options:n,__N:!0,key:this._key="pushState"!==e?this._key:J()},"",r))}},{key:"handleRouteInfoError",value:function(t,r,n,a,o,c){var l=this;return u(function(){var u,s,f,d,h,m,y;return i(this,function(i){switch(i.label){case 0:if(console.error(t),t.cancelled)throw t;if(p.isAssetError(t)||c)throw e.events.emit("routeChangeError",t,a,o),Q({url:a,router:l}),D();i.label=1;case 1:return i.trys.push([1,7,,8]),[4,l.fetchComponent("/_error")];case 2:if((h={props:u,Component:f=(s=i.sent()).page,styleSheets:s.styleSheets,err:t,error:t}).props)return[3,6];i.label=3;case 3:return i.trys.push([3,5,,6]),[4,l.getInitialProps(f,{err:t,pathname:r,query:n})];case 4:return h.props=i.sent(),[3,6];case 5:return m=i.sent(),console.error("Error in error page `getInitialProps`: ",m),h.props={},[3,6];case 6:return[2,h];case 7:return y=i.sent(),[2,l.handleRouteInfoError(v.default(y)?y:Error(y+""),r,n,a,o,!0)];case 8:return[2]}})})()}},{key:"getRouteInfo",value:function(e){var t=e.route,r=e.pathname,n=e.query,a=e.as,l=e.resolvedAs,s=e.routeProps,f=e.locale,h=e.hasMiddleware,m=e.isPreview,g=e.unstable_skipClientCache,_=this;return u(function(){var e,w,S,C,k,I,N,D,Z,q,H,U,F,W,z,V;return i(this,function($){switch($.label){case 0:e=t,$.label=1;case 1:var X;if($.trys.push([1,6,,7]),k=ee({route:e,router:_}),I=_.components[e],s.shallow&&I&&_.route===e)return[2,I];return h&&(I=void 0),N=!I||"initial"in I?void 0:I,D={dataHref:_.pageLoader.getDataHref({href:E.formatWithValidation({pathname:r,query:n}),skipInterpolation:!0,asPath:l,locale:f}),hasMiddleware:!0,isServerRender:_.isSsr,parseJSON:!0,inflightCache:_.sdc,persistCache:!m,isPrefetch:!1,unstable_skipClientCache:g},[4,(X={fetchData:function(){return Y(D)},asPath:l,locale:f,router:_},B(X).then(function(e){return e&&X.fetchData?X.fetchData().then(function(e){return(function(e,t,r){var n={basePath:r.router.basePath,i18n:{locales:r.router.locales},trailingSlash:Boolean(!0)},a=t.headers.get("x-nextjs-rewrite"),i=a||t.headers.get("x-nextjs-matched-path"),u=t.headers.get("x-matched-path");if(!u||i||u.includes("__next_data_catchall")||u.includes("/_error")||u.includes("/404")||(i=u),i){if(i.startsWith("/")){var l=P.parseRelativeUrl(i),s=L.getNextPathnameInfo(l.pathname,{nextConfig:n,parseData:!0}),f=d.removeTrailingSlash(s.pathname);return Promise.all([r.router.pageLoader.getPageList(),p.getClientBuildManifest(),]).then(function(t){var n=o(t,2),i=n[0];n[1].__rewrites;var u=M.addLocale(s.pathname,s.locale);if(b.isDynamicRoute(u)||!a&&i.includes(y.normalizeLocalePath(R.removeBasePath(u),r.router.locales).pathname)){var c=L.getNextPathnameInfo(P.parseRelativeUrl(e).pathname,{parseData:!0});u=A.addBasePath(c.pathname),l.pathname=u}if(!i.includes(f)){var d=G(f,i);d!==f&&(f=d)}var p=i.includes(f)?f:G(y.normalizeLocalePath(R.removeBasePath(l.pathname),r.router.locales).pathname,i);if(b.isDynamicRoute(p)){var h=O.getRouteMatcher(j.getRouteRegex(p))(u);Object.assign(l.query,h||{})}return{type:"rewrite",parsedAs:l,resolvedHref:p}})}var h=x.parsePath(e),v=T.formatNextPathnameInfo(c({},L.getNextPathnameInfo(h.pathname,{nextConfig:n,parseData:!0}),{defaultLocale:r.router.defaultLocale,buildId:""}));return Promise.resolve({type:"redirect-external",destination:"".concat(v).concat(h.query).concat(h.hash)})}var m=t.headers.get("x-nextjs-redirect");if(m){if(m.startsWith("/")){var g=x.parsePath(m),_=T.formatNextPathnameInfo(c({},L.getNextPathnameInfo(g.pathname,{nextConfig:n,parseData:!0}),{defaultLocale:r.router.defaultLocale,buildId:""}));return Promise.resolve({type:"redirect-internal",newAs:"".concat(_).concat(g.query).concat(g.hash),newUrl:"".concat(_).concat(g.query).concat(g.hash)})}return Promise.resolve({type:"redirect-external",destination:m})}return Promise.resolve({type:"next"})})(e.dataHref,e.response,X).then(function(t){return{dataHref:e.dataHref,cacheKey:e.cacheKey,json:e.json,response:e.response,text:e.text,effect:t}})}).catch(function(e){return null}):null}))];case 2:if(Z=$.sent(),k(),(null==Z?void 0:null==(w=Z.effect)?void 0:w.type)==="redirect-internal"||(null==Z?void 0:null==(S=Z.effect)?void 0:S.type)==="redirect-external")return[2,Z.effect];if((null==Z?void 0:null==(C=Z.effect)?void 0:C.type)==="rewrite"&&(e=d.removeTrailingSlash(Z.effect.resolvedHref),r=Z.effect.resolvedHref,n=c({},n,Z.effect.parsedAs.query),l=R.removeBasePath(y.normalizeLocalePath(Z.effect.parsedAs.pathname,_.locales).pathname),I=_.components[e],s.shallow&&I&&_.route===e&&!h))return[2,c({},I,{route:e})];if("/api"===e||e.startsWith("/api/"))return Q({url:a,router:_}),[2,new Promise(function(){})];if(H=N)return[3,4];return[4,_.fetchComponent(e).then(function(e){return{Component:e.page,styleSheets:e.styleSheets,__N_SSG:e.mod.__N_SSG,__N_SSP:e.mod.__N_SSP}})];case 3:H=$.sent(),$.label=4;case 4:return U=(q=H).__N_SSG||q.__N_SSP,[4,_._getData(u(function(){var e,t,o,u,c;return i(this,function(o){switch(o.label){case 0:if(!U)return[3,4];if(!(null==Z?void 0:Z.json))return[3,1];return u=Z,[3,3];case 1:return[4,Y({dataHref:_.pageLoader.getDataHref({href:E.formatWithValidation({pathname:r,query:n}),asPath:l,locale:f}),isServerRender:_.isSsr,parseJSON:!0,inflightCache:_.sdc,persistCache:!m,isPrefetch:!1,unstable_skipClientCache:g})];case 2:u=o.sent(),o.label=3;case 3:return t=(e=u).json,[2,{cacheKey:e.cacheKey,props:t||{}}];case 4:return c={headers:{},cacheKey:""},[4,_.getInitialProps(q.Component,{pathname:r,query:n,asPath:a,locale:f,locales:_.locales,defaultLocale:_.defaultLocale})];case 5:return[2,(c.props=o.sent(),c)]}})}))];case 5:return W=(F=$.sent()).props,z=F.cacheKey,q.__N_SSP&&D.dataHref&&delete _.sdc[z],!_.isPreview&&q.__N_SSG&&Y(Object.assign({},D,{isBackground:!0,persistCache:!1,inflightCache:K})).catch(function(){}),W.pageProps=Object.assign({},W.pageProps),q.props=W,q.route=e,q.query=n,q.resolvedAs=l,_.components[e]=q,[2,q];case 6:return V=$.sent(),[2,_.handleRouteInfoError(v.getProperError(V),r,n,a,s)];case 7:return[2]}})})()}},{key:"set",value:function(e,t,r){return this.state=e,this.sub(t,this.components["/_app"].Component,r)}},{key:"beforePopState",value:function(e){this._bps=e}},{key:"onlyAHashChange",value:function(e){if(!this.asPath)return!1;var t=o(this.asPath.split("#"),2),r=t[0],n=t[1],a=o(e.split("#"),2),i=a[0],u=a[1];return!!u&&r===i&&n===u||r===i&&n!==u}},{key:"scrollToHash",value:function(e){var t=o(e.split("#"),2)[1],r=void 0===t?"":t;if(""===r||"top"===r){$(function(){return window.scrollTo(0,0)});return}var n=decodeURIComponent(r),a=document.getElementById(n);if(a){$(function(){return a.scrollIntoView()});return}var i=document.getElementsByName(n)[0];i&&$(function(){return i.scrollIntoView()})}},{key:"urlIsNew",value:function(e){return this.asPath!==e}},{key:"prefetch",value:function(e){var t=arguments.length>1&&void 0!==arguments[1]?arguments[1]:e,r=arguments.length>2&&void 0!==arguments[2]?arguments[2]:{},n=this;return u(function(){var a,o,u,c,l,s,f,p,h,v;return i(this,function(i){switch(i.label){case 0:if(N.isBot(window.navigator.userAgent))return[2];return o=(a=P.parseRelativeUrl(e)).pathname,u=a.query,[4,n.pageLoader.getPageList()];case 1:return c=i.sent(),l=t,s=void 0!==r.locale?r.locale||void 0:n.locale,[3,3];case 2:if(f=i.sent().__rewrites,(h=S.default(A.addBasePath(M.addLocale(t,n.locale),!0),c,f,a.query,function(e){return G(e,c)},n.locales)).externalDest)return[2];l=C.removeLocale(R.removeBasePath(h.asPath),n.locale),h.matchedPage&&h.resolvedHref&&(o=h.resolvedHref,a.pathname=o,e=E.formatWithValidation(a)),i.label=3;case 3:return a.pathname=G(a.pathname,c),b.isDynamicRoute(a.pathname)&&(o=a.pathname,a.pathname=o,Object.assign(u,O.getRouteMatcher(j.getRouteRegex(a.pathname))(x.parsePath(t).pathname)||{}),e=E.formatWithValidation(a)),v=d.removeTrailingSlash(o),[4,Promise.all([n.pageLoader._isSsg(v).then(function(t){return!!t&&Y({dataHref:n.pageLoader.getDataHref({href:e,asPath:l,locale:s}),isServerRender:!1,parseJSON:!0,inflightCache:n.sdc,persistCache:!n.isPreview,isPrefetch:!0,unstable_skipClientCache:r.unstable_skipClientCache||!!r.priority}).then(function(){return!1})}),n.pageLoader[r.priority?"loadPage":"prefetch"](v)])];case 4:return i.sent(),[2]}})})()}},{key:"fetchComponent",value:function(e){var t=this;return u(function(){var r,n,a;return i(this,function(o){switch(o.label){case 0:r=ee({route:e,router:t}),o.label=1;case 1:return o.trys.push([1,3,,4]),[4,t.pageLoader.loadPage(e)];case 2:return n=o.sent(),r(),[2,n];case 3:throw a=o.sent(),r(),a;case 4:return[2]}})})()}},{key:"_getData",value:function(e){var t=this,r=!1,n=function(){r=!0};return this.clc=n,e().then(function(e){if(n===t.clc&&(t.clc=null),r){var a=Error("Loading initial props cancelled");throw a.cancelled=!0,a}return e})}},{key:"_getFlightData",value:function(e){return Y({dataHref:e,isServerRender:!0,parseJSON:!1,inflightCache:this.sdc,persistCache:!1,isPrefetch:!1}).then(function(e){return{data:e.text}})}},{key:"getInitialProps",value:function(e,t){var r=this.components["/_app"].Component,n=this._wrapApp(r);return t.AppTree=n,_.loadGetInitialProps(r,{AppTree:n,Component:e,router:this,ctx:t})}},{key:"route",get:function(){return this.state.route}},{key:"pathname",get:function(){return this.state.pathname}},{key:"query",get:function(){return this.state.query}},{key:"asPath",get:function(){return this.state.asPath}},{key:"locale",get:function(){return this.state.locale}},{key:"isFallback",get:function(){return this.state.isFallback}},{key:"isPreview",get:function(){return this.state.isPreview}}]),e}();et.events=g.default(),t.default=et},77459:function(e,t,r){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.addLocale=function(e,t,r,o){return t&&t!==r&&(o||!a.pathHasPrefix(e.toLowerCase(),"/".concat(t.toLowerCase()))&&!a.pathHasPrefix(e.toLowerCase(),"/api"))?n.addPathPrefix(e,"/".concat(t)):e};var n=r(95391),a=r(1259)},95391:function(e,t,r){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.addPathPrefix=function(e,t){if(!e.startsWith("/")||!t)return e;var r=n.parsePath(e),a=r.pathname,o=r.query,i=r.hash;return"".concat(t).concat(a).concat(o).concat(i)};var n=r(4943)},84156:function(e,t,r){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.addPathSuffix=function(e,t){if(!e.startsWith("/")||!t)return e;var r=n.parsePath(e),a=r.pathname,o=r.query,i=r.hash;return"".concat(a).concat(t).concat(o).concat(i)};var n=r(4943)},610:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.compareRouterStates=function(e,t){var r=Object.keys(e);if(r.length!==Object.keys(t).length)return!1;for(var n=r.length;n--;){var a=r[n];if("query"===a){var o=Object.keys(e.query);if(o.length!==Object.keys(t.query).length)return!1;for(var i=o.length;i--;){var u=o[i];if(!t.query.hasOwnProperty(u)||e.query[u]!==t.query[u])return!1}}else if(!t.hasOwnProperty(a)||e[a]!==t[a])return!1}return!0}},34022:function(e,t,r){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.formatNextPathnameInfo=function(e){var t=i.addLocale(e.pathname,e.locale,e.buildId?void 0:e.defaultLocale,e.ignorePrefix);return e.buildId&&(t=o.addPathSuffix(a.addPathPrefix(t,"/_next/data/".concat(e.buildId)),"/"===e.pathname?"index.json":".json")),t=a.addPathPrefix(t,e.basePath),e.trailingSlash?e.buildId||t.endsWith("/")?t:o.addPathSuffix(t,"/"):n.removeTrailingSlash(t)};var n=r(86316),a=r(95391),o=r(84156),i=r(77459)},4611:function(e,t,r){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.formatUrl=o,t.formatWithValidation=i,t.urlObjectKeys=void 0;var n=(0,r(91598).Z)(r(50466)),a=/https?|ftp|gopher|file/;function o(e){var t=e.auth,r=e.hostname,o=e.protocol||"",i=e.pathname||"",u=e.hash||"",c=e.query||"",l=!1;t=t?encodeURIComponent(t).replace(/%3A/i,":")+"@":"",e.host?l=t+e.host:r&&(l=t+(~r.indexOf(":")?"[".concat(r,"]"):r),e.port&&(l+=":"+e.port)),c&&"object"==typeof c&&(c=String(n.urlQueryToSearchParams(c)));var s=e.search||c&&"?".concat(c)||"";return o&&!o.endsWith(":")&&(o+=":"),e.slashes||(!o||a.test(o))&&!1!==l?(l="//"+(l||""),i&&"/"!==i[0]&&(i="/"+i)):l||(l=""),u&&"#"!==u[0]&&(u="#"+u),s&&"?"!==s[0]&&(s="?"+s),i=i.replace(/[?#]/g,encodeURIComponent),s=s.replace("#","%23"),"".concat(o).concat(l).concat(i).concat(s).concat(u)}function i(e){return o(e)}t.urlObjectKeys=["auth","hash","host","hostname","href","path","pathname","port","protocol","query","search","slashes",]},73891:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.default=function(e){var t=arguments.length>1&&void 0!==arguments[1]?arguments[1]:"";return("/"===e?"/index":/^\/index(\/|$)/.test(e)?"/index".concat(e):"".concat(e))+t}},20159:function(e,t,r){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.getNextPathnameInfo=function(e,t){var r,i=null!=(r=t.nextConfig)?r:{},u=i.basePath,c=i.i18n,l=i.trailingSlash,s={pathname:e,trailingSlash:"/"!==e?e.endsWith("/"):l};if(u&&o.pathHasPrefix(s.pathname,u)&&(s.pathname=a.removePathPrefix(s.pathname,u),s.basePath=u),!0===t.parseData&&s.pathname.startsWith("/_next/data/")&&s.pathname.endsWith(".json")){var f=s.pathname.replace(/^\/_next\/data\//,"").replace(/\.json$/,"").split("/"),d=f[0];s.pathname="index"!==f[1]?"/".concat(f.slice(1).join("/")):"/",s.buildId=d}if(c){var p=n.normalizeLocalePath(s.pathname,c.locales);s.locale=null==p?void 0:p.detectedLocale,s.pathname=(null==p?void 0:p.pathname)||s.pathname}return s};var n=r(94317),a=r(9244),o=r(1259)},90418:function(e,t,r){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),Object.defineProperty(t,"getSortedRoutes",{enumerable:!0,get:function(){return n.getSortedRoutes}}),Object.defineProperty(t,"isDynamicRoute",{enumerable:!0,get:function(){return a.isDynamicRoute}});var n=r(53907),a=r(78689)},29671:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.isBot=function(e){return/Googlebot|Mediapartners-Google|AdsBot-Google|googleweblight|Storebot-Google|Google-PageRenderer|Bingbot|BingPreview|Slurp|DuckDuckBot|baiduspider|yandex|sogou|LinkedInBot|bitlybot|tumblr|vkShare|quora link preview|facebookexternalhit|facebookcatalog|Twitterbot|applebot|redditbot|Slackbot|Discordbot|WhatsApp|SkypeUriPreview|ia_archiver/i.test(e)}},78689:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.isDynamicRoute=function(e){return r.test(e)};var r=/\/\[[^/]+?\](?=\/|$)/},4943:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.parsePath=function(e){var t=e.indexOf("#"),r=e.indexOf("?"),n=r>-1&&(t<0||r-1?{pathname:e.substring(0,n?r:t),query:n?e.substring(r,t>-1?t:void 0):"",hash:t>-1?e.slice(t):""}:{pathname:e,query:"",hash:""}}},36305:function(e,t,r){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.parseRelativeUrl=function(e,t){var r=new URL(n.getLocationOrigin()),o=t?new URL(t,r):e.startsWith(".")?new URL(window.location.href):r,i=new URL(e,o),u=i.pathname,c=i.searchParams,l=i.search,s=i.hash,f=i.href;if(i.origin!==r.origin)throw Error("invariant: invalid relative URL, router received ".concat(e));return{pathname:u,query:a.searchParamsToUrlQuery(c),search:l,hash:s,href:f.slice(r.origin.length)}};var n=r(63794),a=r(50466)},1259:function(e,t,r){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.pathHasPrefix=function(e,t){if("string"!=typeof e)return!1;var r=n.parsePath(e).pathname;return r===t||r.startsWith(t+"/")};var n=r(4943)},50466:function(e,t,r){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n=r(94941).Z;function a(e){return"string"!=typeof e&&("number"!=typeof e||isNaN(e))&&"boolean"!=typeof e?"":String(e)}Object.defineProperty(t,"__esModule",{value:!0}),t.searchParamsToUrlQuery=function(e){var t={};return e.forEach(function(e,r){void 0===t[r]?t[r]=e:Array.isArray(t[r])?t[r].push(e):t[r]=[t[r],e]}),t},t.urlQueryToSearchParams=function(e){var t=new URLSearchParams;return Object.entries(e).forEach(function(e){var r=n(e,2),o=r[0],i=r[1];Array.isArray(i)?i.forEach(function(e){return t.append(o,a(e))}):t.set(o,a(i))}),t},t.assign=function(e){for(var t=arguments.length,r=Array(t>1?t-1:0),n=1;n122&&(r++,t=97);return e}),c={};return{namedParameterizedRoute:n.map(function(e){if(!(e.startsWith("[")&&e.endsWith("]")))return"/".concat(a.escapeStringRegexp(e));var t=i(e.slice(1,-1)),r=t.key,n=t.optional,o=t.repeat,l=r.replace(/\W/g,""),s=!1;return(0===l.length||l.length>30)&&(s=!0),isNaN(parseInt(l.slice(0,1)))||(s=!0),s&&(l=u()),c[l]=r,o?n?"(?:/(?<".concat(l,">.+?))?"):"/(?<".concat(l,">.+?)"):"/(?<".concat(l,">[^/]+?)")}).join(""),routeKeys:c}}},53907:function(e,t,r){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n=r(79658).Z,a=r(7222).Z,o=r(53929).Z;Object.defineProperty(t,"__esModule",{value:!0}),t.getSortedRoutes=function(e){var t=new i;return e.forEach(function(e){return t.insert(e)}),t.smoosh()};var i=function(){function e(){n(this,e),this.placeholder=!0,this.children=new Map,this.slugName=null,this.restSlugName=null,this.optionalRestSlugName=null}return a(e,[{key:"insert",value:function(e){this._insert(e.split("/").filter(Boolean),[],!1)}},{key:"smoosh",value:function(){return this._smoosh()}},{key:"_smoosh",value:function(){var e,t,r,n=arguments.length>0&&void 0!==arguments[0]?arguments[0]:"/",a=this,i=o(this.children.keys()).sort();null!==this.slugName&&i.splice(i.indexOf("[]"),1),null!==this.restSlugName&&i.splice(i.indexOf("[...]"),1),null!==this.optionalRestSlugName&&i.splice(i.indexOf("[[...]]"),1);var u=i.map(function(e){return a.children.get(e)._smoosh("".concat(n).concat(e,"/"))}).reduce(function(e,t){return o(e).concat(o(t))},[]);if(null!==this.slugName&&u.push.apply(u,o(this.children.get("[]")._smoosh("".concat(n,"[").concat(this.slugName,"]/")))),!this.placeholder){var c="/"===n?"/":n.slice(0,-1);if(null!=this.optionalRestSlugName)throw Error('You cannot define a route with the same specificity as a optional catch-all route ("'.concat(c,'" and "').concat(c,"[[...").concat(this.optionalRestSlugName,']]").'));u.unshift(c)}return null!==this.restSlugName&&u.push.apply(u,o(this.children.get("[...]")._smoosh("".concat(n,"[...").concat(this.restSlugName,"]/")))),null!==this.optionalRestSlugName&&u.push.apply(u,o(this.children.get("[[...]]")._smoosh("".concat(n,"[[...").concat(this.optionalRestSlugName,"]]/")))),u}},{key:"_insert",value:function(t,r,n){if(0===t.length){this.placeholder=!1;return}if(n)throw Error("Catch-all must be the last part of the URL.");var a=t[0];if(a.startsWith("[")&&a.endsWith("]")){var o=function(e,t){if(null!==e&&e!==t)throw Error("You cannot use different slug names for the same dynamic path ('".concat(e,"' !== '").concat(t,"')."));r.forEach(function(e){if(e===t)throw Error('You cannot have the same slug name "'.concat(t,'" repeat within a single dynamic path'));if(e.replace(/\W/g,"")===a.replace(/\W/g,""))throw Error('You cannot have the slug names "'.concat(e,'" and "').concat(t,'" differ only by non-word symbols within a single dynamic path'))}),r.push(t)},i=a.slice(1,-1),u=!1;if(i.startsWith("[")&&i.endsWith("]")&&(i=i.slice(1,-1),u=!0),i.startsWith("...")&&(i=i.substring(3),n=!0),i.startsWith("[")||i.endsWith("]"))throw Error("Segment names may not start or end with extra brackets ('".concat(i,"')."));if(i.startsWith("."))throw Error("Segment names may not start with erroneous periods ('".concat(i,"')."));if(n){if(u){if(null!=this.restSlugName)throw Error('You cannot use both an required and optional catch-all route at the same level ("[...'.concat(this.restSlugName,']" and "').concat(t[0],'" ).'));o(this.optionalRestSlugName,i),this.optionalRestSlugName=i,a="[[...]]"}else{if(null!=this.optionalRestSlugName)throw Error('You cannot use both an optional and required catch-all route at the same level ("[[...'.concat(this.optionalRestSlugName,']]" and "').concat(t[0],'").'));o(this.restSlugName,i),this.restSlugName=i,a="[...]"}}else{if(u)throw Error('Optional route parameters are not yet supported ("'.concat(t[0],'").'));o(this.slugName,i),this.slugName=i,a="[]"}}this.children.has(a)||this.children.set(a,new e),this.children.get(a)._insert(t.slice(1),r,n)}}]),e}()},88027:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.setConfig=a,t.default=void 0;var r,n=function(){return r};function a(e){r=e}t.default=n,("function"==typeof t.default||"object"==typeof t.default&&null!==t.default)&&void 0===t.default.__esModule&&(Object.defineProperty(t.default,"__esModule",{value:!0}),Object.assign(t.default,t),e.exports=t.default)},55188:function(e,t,r){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.default=function(e){var t,r=function(){if(u&&u.mountedInstances){var t=n.Children.toArray(Array.from(u.mountedInstances).filter(Boolean));u.updateHead(c(t,e))}},u=e.headManager,c=e.reduceComponentsToState;return a&&(null==u||null==(t=u.mountedInstances)||t.add(e.children),r()),o(function(){var t;return null==u||null==(t=u.mountedInstances)||t.add(e.children),function(){var t;null==u||null==(t=u.mountedInstances)||t.delete(e.children)}}),o(function(){return u&&(u._pendingUpdate=r),function(){u&&(u._pendingUpdate=r)}}),i(function(){return u&&u._pendingUpdate&&(u._pendingUpdate(),u._pendingUpdate=null),function(){u&&u._pendingUpdate&&(u._pendingUpdate(),u._pendingUpdate=null)}}),null};var n=(0,r(91598).Z)(r(67294)),a=!1,o=a?function(){}:n.useLayoutEffect,i=a?function(){}:n.useEffect},63794:function(e,t,r){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n=r(79658).Z,a=r(97788).Z,o=r(53929).Z,i=r(79968).Z,u=r(37735).Z,c=r(32401).Z;Object.defineProperty(t,"__esModule",{value:!0}),t.execOnce=function(e){var t,r=!1;return function(){for(var n=arguments.length,a=Array(n),i=0;i=0?n="back-forward-cache":r&&(n=document.prerendering||f()>0?"prerender":r.type.replace(/_/g,"-")),{name:e,value:void 0===t?-1:t,rating:"good",delta:0,entries:[],id:"v3-".concat(Date.now(),"-").concat(Math.floor(8999999999999*Math.random())+1e12),navigationType:n}},p=function(e,t,r){try{if(PerformanceObserver.supportedEntryTypes.includes(e)){var n=new PerformanceObserver(function(e){t(e.getEntries())});return n.observe(Object.assign({type:e,buffered:!0},r||{})),n}}catch(a){}},h=function(e,t){var r=function r(n){"pagehide"!==n.type&&"hidden"!==document.visibilityState||(e(n),t&&(removeEventListener("visibilitychange",r,!0),removeEventListener("pagehide",r,!0)))};addEventListener("visibilitychange",r,!0),addEventListener("pagehide",r,!0)},v=function(e,t,r,n){var a,o;return function(i){var u,c;t.value>=0&&(i||n)&&((o=t.value-(a||0))||void 0===a)&&(a=t.value,t.delta=o,t.rating=(u=t.value)>r[1]?"poor":u>r[0]?"needs-improvement":"good",e(t))}},m=-1,y=function(){return"hidden"!==document.visibilityState||document.prerendering?1/0:0},g=function(){h(function(e){m=e.timeStamp},!0)},_=function(){return m<0&&(m=y(),g(),l(function(){setTimeout(function(){m=y(),g()},0)})),{get firstHiddenTime(){return m}}},b=function(e,t){t=t||{};var r,n=[1800,3e3],a=_(),o=d("FCP"),i=function(e){e.forEach(function(e){"first-contentful-paint"===e.name&&(c&&c.disconnect(),e.startTime-1&&e(t)},o=d("CLS",0),i=0,u=[],c=function(e){e.forEach(function(e){if(!e.hadRecentInput){var t=u[0],r=u[u.length-1];i&&e.startTime-r.startTime<1e3&&e.startTime-t.startTime<5e3?(i+=e.value,u.push(e)):(i=e.value,u=[e]),i>o.value&&(o.value=i,o.entries=u,n())}})},s=p("layout-shift",c);s&&(n=v(a,o,r,t.reportAllChanges),h(function(){c(s.takeRecords()),n(!0)}),l(function(){i=0,w=-1,o=d("CLS",0),n=v(a,o,r,t.reportAllChanges)}))},O={passive:!0,capture:!0},j=new Date,E=function(e,t){n||(n=t,a=e,o=new Date,C(removeEventListener),x())},x=function(){if(a>=0&&a1e12?new Date:performance.now())-e.timeStamp;"pointerdown"==e.type?(n=function(){E(i,e),o()},a=function(){o()},o=function(){removeEventListener("pointerup",n,O),removeEventListener("pointercancel",a,O)},addEventListener("pointerup",n,O),addEventListener("pointercancel",a,O)):E(i,e)}},C=function(e){["mousedown","keydown","touchstart","pointerdown"].forEach(function(t){return e(t,M,O)})},R=function(e,t){t=t||{};var r,o=[100,300],u=_(),c=d("FID"),s=function(e){e.startTimet.latency){if(r)r.entries.push(e),r.latency=Math.max(r.latency,e.duration);else{var n={id:e.interactionId,latency:e.duration,entries:[e]};q[n.id]=n,Z.push(n)}Z.sort(function(e,t){return t.latency-e.latency}),Z.splice(10).forEach(function(e){delete q[e.id]})}},U=function(e,t){t=t||{};var r=[200,500];N();var n,a=d("INP"),o=function(e){e.forEach(function(e){e.interactionId&&H(e),"first-input"!==e.entryType||Z.some(function(t){return t.entries.some(function(t){return e.duration===t.duration&&e.startTime===t.startTime})})||H(e)});var t,r=Z[Math.min(Z.length-1,Math.floor(B()/50))];r&&r.latency!==a.value&&(a.value=r.latency,a.entries=r.entries,n())},i=p("event",o,{durationThreshold:t.durationThreshold||40});n=v(e,a,r,t.reportAllChanges),i&&(i.observe({type:"first-input",buffered:!0}),h(function(){o(i.takeRecords()),a.value<0&&B()>0&&(a.value=0,a.entries=[]),n(!0)}),l(function(){Z=[],D=I(),a=d("INP"),n=v(e,a,r,t.reportAllChanges)}))},F={},W=function(e,t){t=t||{};var r,n=[2500,4e3],a=_(),o=d("LCP"),i=function(e){var t=e[e.length-1];if(t){var n=t.startTime-f();nperformance.now())return;n.entries=[o],a(!0),l(function(){n=d("TTFB",0),(a=v(e,n,r,t.reportAllChanges))(!0)})}})},e.exports=r},80676:function(e,t,r){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.default=a,t.getProperError=function(e){return a(e)?e:Error(n.isPlainObject(e)?JSON.stringify(e):e+"")};var n=r(88887);function a(e){return"object"==typeof e&&null!==e&&"name"in e&&"message"in e}},72431:function(){}},function(e){e.O(0,[774],function(){return e(e.s=22870)}),_N_E=e.O()}]);
\ No newline at end of file
diff --git a/_next/static/chunks/pages/404-b57e76d696787bc8.js b/_next/static/chunks/pages/404-b57e76d696787bc8.js
new file mode 100644
index 000000000000..15deeed557c9
--- /dev/null
+++ b/_next/static/chunks/pages/404-b57e76d696787bc8.js
@@ -0,0 +1 @@
+(self.webpackChunk_N_E=self.webpackChunk_N_E||[]).push([[197],{6141:function(n,u,t){(window.__NEXT_P=window.__NEXT_P||[]).push(["/404",function(){return t(5838)}])},5838:function(n,u,t){"use strict";t.r(u),t.d(u,{__N_SSG:function(){return r},default:function(){return f}});var _=t(85893),e=t(12918),r=!0;function f(){return(0,_.jsx)(e.default,{statusCode:404})}},12918:function(n,u,t){n.exports=t(89185)}},function(n){n.O(0,[774,888,179],function(){return n(n.s=6141)}),_N_E=n.O()}]);
\ No newline at end of file
diff --git a/_next/static/chunks/pages/500-74ddb8962212ea31.js b/_next/static/chunks/pages/500-74ddb8962212ea31.js
new file mode 100644
index 000000000000..05e29d90cb86
--- /dev/null
+++ b/_next/static/chunks/pages/500-74ddb8962212ea31.js
@@ -0,0 +1 @@
+(self.webpackChunk_N_E=self.webpackChunk_N_E||[]).push([[573],{40698:function(n,u,t){(window.__NEXT_P=window.__NEXT_P||[]).push(["/500",function(){return t(53897)}])},53897:function(n,u,t){"use strict";t.r(u),t.d(u,{__N_SSG:function(){return r},default:function(){return f}});var _=t(85893),e=t(12918),r=!0;function f(){return(0,_.jsx)(e.default,{statusCode:500})}},12918:function(n,u,t){n.exports=t(89185)}},function(n){n.O(0,[774,888,179],function(){return n(n.s=40698)}),_N_E=n.O()}]);
\ No newline at end of file
diff --git a/_next/static/chunks/pages/_app-ef74b5fb55770474.js b/_next/static/chunks/pages/_app-ef74b5fb55770474.js
new file mode 100644
index 000000000000..53d33f7296d1
--- /dev/null
+++ b/_next/static/chunks/pages/_app-ef74b5fb55770474.js
@@ -0,0 +1,60 @@
+(self.webpackChunk_N_E=self.webpackChunk_N_E||[]).push([[888],{92138:function(e,t,n){"use strict";n.r(t),n.d(t,{blue:function(){return N},cyan:function(){return T},geekblue:function(){return P},generate:function(){return b},gold:function(){return C},green:function(){return k},grey:function(){return F},lime:function(){return O},magenta:function(){return M},orange:function(){return A},presetDarkPalettes:function(){return x},presetPalettes:function(){return w},presetPrimaryColors:function(){return E},purple:function(){return I},red:function(){return _},volcano:function(){return S},yellow:function(){return D}});var r=n(86500),i=n(1350),o=2,a=.16,s=.05,u=.05,c=.15,l=5,f=4,d=[{index:7,opacity:.15},{index:6,opacity:.25},{index:5,opacity:.3},{index:5,opacity:.45},{index:5,opacity:.65},{index:5,opacity:.85},{index:4,opacity:.9},{index:3,opacity:.95},{index:2,opacity:.97},{index:1,opacity:.98}];function p(e){var t=e.r,n=e.g,i=e.b,o=(0,r.py)(t,n,i);return{h:360*o.h,s:o.s,v:o.v}}function h(e){var t=e.r,n=e.g,i=e.b;return"#".concat((0,r.vq)(t,n,i,!1))}function m(e,t,n){var r=n/100;return{r:(t.r-e.r)*r+e.r,g:(t.g-e.g)*r+e.g,b:(t.b-e.b)*r+e.b}}function v(e,t,n){var r;return(r=Math.round(e.h)>=60&&240>=Math.round(e.h)?n?Math.round(e.h)-o*t:Math.round(e.h)+o*t:n?Math.round(e.h)+o*t:Math.round(e.h)-o*t)<0?r+=360:r>=360&&(r-=360),r}function g(e,t,n){var r;return 0===e.h&&0===e.s?e.s:((r=n?e.s-a*t:t===f?e.s+a:e.s+s*t)>1&&(r=1),n&&t===l&&r>.1&&(r=.1),r<.06&&(r=.06),Number(r.toFixed(2)))}function y(e,t,n){var r;return(r=n?e.v+u*t:e.v-c*t)>1&&(r=1),Number(r.toFixed(2))}function b(e){for(var t=arguments.length>1&&void 0!==arguments[1]?arguments[1]:{},n=[],r=(0,i.uA)(e),o=l;o>0;o-=1){var a=p(r),s=h((0,i.uA)({h:v(a,o,!0),s:g(a,o,!0),v:y(a,o,!0)}));n.push(s)}n.push(h(r));for(var u=1;u<=f;u+=1){var c=p(r),b=h((0,i.uA)({h:v(c,u),s:g(c,u),v:y(c,u)}));n.push(b)}return"dark"===t.theme?d.map(function(e){var r=e.index,o=e.opacity;return h(m((0,i.uA)(t.backgroundColor||"#141414"),(0,i.uA)(n[r]),100*o))}):n}var E={red:"#F5222D",volcano:"#FA541C",orange:"#FA8C16",gold:"#FAAD14",yellow:"#FADB14",lime:"#A0D911",green:"#52C41A",cyan:"#13C2C2",blue:"#1890FF",geekblue:"#2F54EB",purple:"#722ED1",magenta:"#EB2F96",grey:"#666666"},w={},x={};Object.keys(E).forEach(function(e){w[e]=b(E[e]),w[e].primary=w[e][5],x[e]=b(E[e],{theme:"dark",backgroundColor:"#141414"}),x[e].primary=x[e][5]});var _=w.red,S=w.volcano,C=w.gold,A=w.orange,D=w.yellow,O=w.lime,k=w.green,T=w.cyan,N=w.blue,P=w.geekblue,I=w.purple,M=w.magenta,F=w.grey},25413:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n={icon:{tag:"svg",attrs:{viewBox:"0 0 1024 1024",focusable:"false"},children:[{tag:"path",attrs:{d:"M912 192H328c-4.4 0-8 3.6-8 8v56c0 4.4 3.6 8 8 8h584c4.4 0 8-3.6 8-8v-56c0-4.4-3.6-8-8-8zm0 284H328c-4.4 0-8 3.6-8 8v56c0 4.4 3.6 8 8 8h584c4.4 0 8-3.6 8-8v-56c0-4.4-3.6-8-8-8zm0 284H328c-4.4 0-8 3.6-8 8v56c0 4.4 3.6 8 8 8h584c4.4 0 8-3.6 8-8v-56c0-4.4-3.6-8-8-8zM104 228a56 56 0 10112 0 56 56 0 10-112 0zm0 284a56 56 0 10112 0 56 56 0 10-112 0zm0 284a56 56 0 10112 0 56 56 0 10-112 0z"}}]},name:"bars",theme:"outlined"};t.default=n},85368:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n={icon:{tag:"svg",attrs:{viewBox:"64 64 896 896",focusable:"false"},children:[{tag:"path",attrs:{d:"M512 64C264.6 64 64 264.6 64 512s200.6 448 448 448 448-200.6 448-448S759.4 64 512 64zm193.5 301.7l-210.6 292a31.8 31.8 0 01-51.7 0L318.5 484.9c-3.8-5.3 0-12.7 6.5-12.7h46.9c10.2 0 19.9 4.9 25.9 13.3l71.2 98.8 157.2-218c6-8.3 15.6-13.3 25.9-13.3H699c6.5 0 10.3 7.4 6.5 12.7z"}}]},name:"check-circle",theme:"filled"};t.default=n},16976:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n={icon:{tag:"svg",attrs:{viewBox:"64 64 896 896",focusable:"false"},children:[{tag:"path",attrs:{d:"M699 353h-46.9c-10.2 0-19.9 4.9-25.9 13.3L469 584.3l-71.2-98.8c-6-8.3-15.6-13.3-25.9-13.3H325c-6.5 0-10.3 7.4-6.5 12.7l124.6 172.8a31.8 31.8 0 0051.7 0l210.6-292c3.9-5.3.1-12.7-6.4-12.7z"}},{tag:"path",attrs:{d:"M512 64C264.6 64 64 264.6 64 512s200.6 448 448 448 448-200.6 448-448S759.4 64 512 64zm0 820c-205.4 0-372-166.6-372-372s166.6-372 372-372 372 166.6 372 372-166.6 372-372 372z"}}]},name:"check-circle",theme:"outlined"};t.default=n},67303:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n={icon:{tag:"svg",attrs:{viewBox:"64 64 896 896",focusable:"false"},children:[{tag:"path",attrs:{d:"M512 64C264.6 64 64 264.6 64 512s200.6 448 448 448 448-200.6 448-448S759.4 64 512 64zm165.4 618.2l-66-.3L512 563.4l-99.3 118.4-66.1.3c-4.4 0-8-3.5-8-8 0-1.9.7-3.7 1.9-5.2l130.1-155L340.5 359a8.32 8.32 0 01-1.9-5.2c0-4.4 3.6-8 8-8l66.1.3L512 464.6l99.3-118.4 66-.3c4.4 0 8 3.5 8 8 0 1.9-.7 3.7-1.9 5.2L553.5 514l130 155c1.2 1.5 1.9 3.3 1.9 5.2 0 4.4-3.6 8-8 8z"}}]},name:"close-circle",theme:"filled"};t.default=n},77384:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n={icon:{tag:"svg",attrs:{viewBox:"64 64 896 896",focusable:"false"},children:[{tag:"path",attrs:{d:"M685.4 354.8c0-4.4-3.6-8-8-8l-66 .3L512 465.6l-99.3-118.4-66.1-.3c-4.4 0-8 3.5-8 8 0 1.9.7 3.7 1.9 5.2l130.1 155L340.5 670a8.32 8.32 0 00-1.9 5.2c0 4.4 3.6 8 8 8l66.1-.3L512 564.4l99.3 118.4 66 .3c4.4 0 8-3.5 8-8 0-1.9-.7-3.7-1.9-5.2L553.5 515l130.1-155c1.2-1.4 1.8-3.3 1.8-5.2z"}},{tag:"path",attrs:{d:"M512 65C264.6 65 64 265.6 64 513s200.6 448 448 448 448-200.6 448-448S759.4 65 512 65zm0 820c-205.4 0-372-166.6-372-372s166.6-372 372-372 372 166.6 372 372-166.6 372-372 372z"}}]},name:"close-circle",theme:"outlined"};t.default=n},79203:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n={icon:{tag:"svg",attrs:{viewBox:"64 64 896 896",focusable:"false"},children:[{tag:"path",attrs:{d:"M563.8 512l262.5-312.9c4.4-5.2.7-13.1-6.1-13.1h-79.8c-4.7 0-9.2 2.1-12.3 5.7L511.6 449.8 295.1 191.7c-3-3.6-7.5-5.7-12.3-5.7H203c-6.8 0-10.5 7.9-6.1 13.1L459.4 512 196.9 824.9A7.95 7.95 0 00203 838h79.8c4.7 0 9.2-2.1 12.3-5.7l216.5-258.1 216.5 258.1c3 3.6 7.5 5.7 12.3 5.7h79.8c6.8 0 10.5-7.9 6.1-13.1L563.8 512z"}}]},name:"close",theme:"outlined"};t.default=n},78515:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n={icon:{tag:"svg",attrs:{viewBox:"64 64 896 896",focusable:"false"},children:[{tag:"path",attrs:{d:"M512 64C264.6 64 64 264.6 64 512s200.6 448 448 448 448-200.6 448-448S759.4 64 512 64zm-32 232c0-4.4 3.6-8 8-8h48c4.4 0 8 3.6 8 8v272c0 4.4-3.6 8-8 8h-48c-4.4 0-8-3.6-8-8V296zm32 440a48.01 48.01 0 010-96 48.01 48.01 0 010 96z"}}]},name:"exclamation-circle",theme:"filled"};t.default=n},34950:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n={icon:{tag:"svg",attrs:{viewBox:"64 64 896 896",focusable:"false"},children:[{tag:"path",attrs:{d:"M512 64C264.6 64 64 264.6 64 512s200.6 448 448 448 448-200.6 448-448S759.4 64 512 64zm0 820c-205.4 0-372-166.6-372-372s166.6-372 372-372 372 166.6 372 372-166.6 372-372 372z"}},{tag:"path",attrs:{d:"M464 688a48 48 0 1096 0 48 48 0 10-96 0zm24-112h48c4.4 0 8-3.6 8-8V296c0-4.4-3.6-8-8-8h-48c-4.4 0-8 3.6-8 8v272c0 4.4 3.6 8 8 8z"}}]},name:"exclamation-circle",theme:"outlined"};t.default=n},80185:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n={icon:{tag:"svg",attrs:{viewBox:"64 64 896 896",focusable:"false"},children:[{tag:"path",attrs:{d:"M854.6 288.6L639.4 73.4c-6-6-14.1-9.4-22.6-9.4H192c-17.7 0-32 14.3-32 32v832c0 17.7 14.3 32 32 32h640c17.7 0 32-14.3 32-32V311.3c0-8.5-3.4-16.7-9.4-22.7zM790.2 326H602V137.8L790.2 326zm1.8 562H232V136h302v216a42 42 0 0042 42h216v494zM504 618H320c-4.4 0-8 3.6-8 8v48c0 4.4 3.6 8 8 8h184c4.4 0 8-3.6 8-8v-48c0-4.4-3.6-8-8-8zM312 490v48c0 4.4 3.6 8 8 8h384c4.4 0 8-3.6 8-8v-48c0-4.4-3.6-8-8-8H320c-4.4 0-8 3.6-8 8z"}}]},name:"file-text",theme:"outlined"};t.default=n},15369:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n={icon:{tag:"svg",attrs:{viewBox:"64 64 896 896",focusable:"false"},children:[{tag:"path",attrs:{d:"M512 64C264.6 64 64 264.6 64 512s200.6 448 448 448 448-200.6 448-448S759.4 64 512 64zm32 664c0 4.4-3.6 8-8 8h-48c-4.4 0-8-3.6-8-8V456c0-4.4 3.6-8 8-8h48c4.4 0 8 3.6 8 8v272zm-32-344a48.01 48.01 0 010-96 48.01 48.01 0 010 96z"}}]},name:"info-circle",theme:"filled"};t.default=n},20702:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n={icon:{tag:"svg",attrs:{viewBox:"64 64 896 896",focusable:"false"},children:[{tag:"path",attrs:{d:"M512 64C264.6 64 64 264.6 64 512s200.6 448 448 448 448-200.6 448-448S759.4 64 512 64zm0 820c-205.4 0-372-166.6-372-372s166.6-372 372-372 372 166.6 372 372-166.6 372-372 372z"}},{tag:"path",attrs:{d:"M464 336a48 48 0 1096 0 48 48 0 10-96 0zm72 112h-48c-4.4 0-8 3.6-8 8v272c0 4.4 3.6 8 8 8h48c4.4 0 8-3.6 8-8V456c0-4.4-3.6-8-8-8z"}}]},name:"info-circle",theme:"outlined"};t.default=n},6594:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n={icon:{tag:"svg",attrs:{viewBox:"64 64 896 896",focusable:"false"},children:[{tag:"path",attrs:{d:"M724 218.3V141c0-6.7-7.7-10.4-12.9-6.3L260.3 486.8a31.86 31.86 0 000 50.3l450.8 352.1c5.3 4.1 12.9.4 12.9-6.3v-77.3c0-4.9-2.3-9.6-6.1-12.6l-360-281 360-281.1c3.8-3 6.1-7.7 6.1-12.6z"}}]},name:"left",theme:"outlined"};t.default=n},25828:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n={icon:{tag:"svg",attrs:{viewBox:"0 0 1024 1024",focusable:"false"},children:[{tag:"path",attrs:{d:"M988 548c-19.9 0-36-16.1-36-36 0-59.4-11.6-117-34.6-171.3a440.45 440.45 0 00-94.3-139.9 437.71 437.71 0 00-139.9-94.3C629 83.6 571.4 72 512 72c-19.9 0-36-16.1-36-36s16.1-36 36-36c69.1 0 136.2 13.5 199.3 40.3C772.3 66 827 103 874 150c47 47 83.9 101.8 109.7 162.7 26.7 63.1 40.2 130.2 40.2 199.3.1 19.9-16 36-35.9 36z"}}]},name:"loading",theme:"outlined"};t.default=n},77307:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n={icon:{tag:"svg",attrs:{viewBox:"64 64 896 896",focusable:"false"},children:[{tag:"path",attrs:{d:"M765.7 486.8L314.9 134.7A7.97 7.97 0 00302 141v77.3c0 4.9 2.3 9.6 6.1 12.6l360 281.1-360 281.1c-3.9 3-6.1 7.7-6.1 12.6V883c0 6.7 7.7 10.4 12.9 6.3l450.8-352.1a31.96 31.96 0 000-50.4z"}}]},name:"right",theme:"outlined"};t.default=n},54067:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var r=i(n(45799));function i(e){return e&&e.__esModule?e:{default:e}}var o=r;t.default=o,e.exports=o},37431:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var r=i(n(95183));function i(e){return e&&e.__esModule?e:{default:e}}var o=r;t.default=o,e.exports=o},67996:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var r=i(n(48138));function i(e){return e&&e.__esModule?e:{default:e}}var o=r;t.default=o,e.exports=o},42547:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var r=i(n(86266));function i(e){return e&&e.__esModule?e:{default:e}}var o=r;t.default=o,e.exports=o},74337:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var r=i(n(92018));function i(e){return e&&e.__esModule?e:{default:e}}var o=r;t.default=o,e.exports=o},40753:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var r=i(n(83482));function i(e){return e&&e.__esModule?e:{default:e}}var o=r;t.default=o,e.exports=o},42461:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var r=i(n(77998));function i(e){return e&&e.__esModule?e:{default:e}}var o=r;t.default=o,e.exports=o},67039:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var r=i(n(3855));function i(e){return e&&e.__esModule?e:{default:e}}var o=r;t.default=o,e.exports=o},94354:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var r=i(n(35438));function i(e){return e&&e.__esModule?e:{default:e}}var o=r;t.default=o,e.exports=o},93201:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var r=i(n(34106));function i(e){return e&&e.__esModule?e:{default:e}}var o=r;t.default=o,e.exports=o},68229:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var r=i(n(7500));function i(e){return e&&e.__esModule?e:{default:e}}var o=r;t.default=o,e.exports=o},628:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var r=i(n(4851));function i(e){return e&&e.__esModule?e:{default:e}}var o=r;t.default=o,e.exports=o},67638:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var r=i(n(86994));function i(e){return e&&e.__esModule?e:{default:e}}var o=r;t.default=o,e.exports=o},98615:function(e,t,n){"use strict";n.d(t,{Z:function(){return I}});var r=n(1413),i=n(97685),o=n(4942),a=n(45987),s=n(67294),u=n(94184),c=n.n(u),l=(0,s.createContext)({}),f=n(71002),d=n(92138),p=n(80334),h=n(44958);function m(e,t){(0,p.ZP)(e,"[@ant-design/icons] ".concat(t))}function v(e){return"object"===(0,f.Z)(e)&&"string"==typeof e.name&&"string"==typeof e.theme&&("object"===(0,f.Z)(e.icon)||"function"==typeof e.icon)}function g(){var e=arguments.length>0&&void 0!==arguments[0]?arguments[0]:{};return Object.keys(e).reduce(function(t,n){var r=e[n];return"class"===n?(t.className=r,delete t.class):t[n]=r,t},{})}function y(e,t,n){return n?s.createElement(e.tag,(0,r.Z)((0,r.Z)({key:t},g(e.attrs)),n),(e.children||[]).map(function(n,r){return y(n,"".concat(t,"-").concat(e.tag,"-").concat(r))})):s.createElement(e.tag,(0,r.Z)({key:t},g(e.attrs)),(e.children||[]).map(function(n,r){return y(n,"".concat(t,"-").concat(e.tag,"-").concat(r))}))}function b(e){return(0,d.generate)(e)[0]}function E(e){return e?Array.isArray(e)?e:[e]:[]}var w="\n.anticon {\n display: inline-block;\n color: inherit;\n font-style: normal;\n line-height: 0;\n text-align: center;\n text-transform: none;\n vertical-align: -0.125em;\n text-rendering: optimizeLegibility;\n -webkit-font-smoothing: antialiased;\n -moz-osx-font-smoothing: grayscale;\n}\n\n.anticon > * {\n line-height: 1;\n}\n\n.anticon svg {\n display: inline-block;\n}\n\n.anticon::before {\n display: none;\n}\n\n.anticon .anticon-icon {\n display: block;\n}\n\n.anticon[tabindex] {\n cursor: pointer;\n}\n\n.anticon-spin::before,\n.anticon-spin {\n display: inline-block;\n -webkit-animation: loadingCircle 1s infinite linear;\n animation: loadingCircle 1s infinite linear;\n}\n\n@-webkit-keyframes loadingCircle {\n 100% {\n -webkit-transform: rotate(360deg);\n transform: rotate(360deg);\n }\n}\n\n@keyframes loadingCircle {\n 100% {\n -webkit-transform: rotate(360deg);\n transform: rotate(360deg);\n }\n}\n",x=function(){var e=arguments.length>0&&void 0!==arguments[0]?arguments[0]:w,t=(0,s.useContext)(l).csp;(0,s.useEffect)(function(){(0,h.h)(e,"@ant-design-icons",{prepend:!0,csp:t})},[])},_=["icon","className","onClick","style","primaryColor","secondaryColor"],S={primaryColor:"#333",secondaryColor:"#E6E6E6",calculated:!1};function C(e){var t=e.primaryColor,n=e.secondaryColor;S.primaryColor=t,S.secondaryColor=n||b(t),S.calculated=!!n}function A(){return(0,r.Z)({},S)}var D=function(e){var t=e.icon,n=e.className,i=e.onClick,o=e.style,s=e.primaryColor,u=e.secondaryColor,c=(0,a.Z)(e,_),l=S;if(s&&(l={primaryColor:s,secondaryColor:u||b(s)}),x(),m(v(t),"icon should be icon definiton, but got ".concat(t)),!v(t))return null;var f=t;return f&&"function"==typeof f.icon&&(f=(0,r.Z)((0,r.Z)({},f),{},{icon:f.icon(l.primaryColor,l.secondaryColor)})),y(f.icon,"svg-".concat(f.name),(0,r.Z)({className:n,onClick:i,style:o,"data-icon":f.name,width:"1em",height:"1em",fill:"currentColor","aria-hidden":"true"},c))};D.displayName="IconReact",D.getTwoToneColors=A,D.setTwoToneColors=C;var O=D;function k(e){var t=E(e),n=(0,i.Z)(t,2),r=n[0],o=n[1];return O.setTwoToneColors({primaryColor:r,secondaryColor:o})}function T(){var e=O.getTwoToneColors();return e.calculated?[e.primaryColor,e.secondaryColor]:e.primaryColor}var N=["className","icon","spin","rotate","tabIndex","onClick","twoToneColor"];k("#1890ff");var P=s.forwardRef(function(e,t){var n,u=e.className,f=e.icon,d=e.spin,p=e.rotate,h=e.tabIndex,m=e.onClick,v=e.twoToneColor,g=(0,a.Z)(e,N),y=s.useContext(l).prefixCls,b=void 0===y?"anticon":y,w=c()(b,(n={},(0,o.Z)(n,"".concat(b,"-").concat(f.name),!!f.name),(0,o.Z)(n,"".concat(b,"-spin"),!!d||"loading"===f.name),n),u),x=h;void 0===x&&m&&(x=-1);var _=p?{msTransform:"rotate(".concat(p,"deg)"),transform:"rotate(".concat(p,"deg)")}:void 0,S=E(v),C=(0,i.Z)(S,2),A=C[0],D=C[1];return s.createElement("span",(0,r.Z)((0,r.Z)({role:"img","aria-label":f.name},g),{},{ref:t,tabIndex:x,onClick:m,className:w}),s.createElement(O,{icon:f,primaryColor:A,secondaryColor:D,style:_}))});P.displayName="AntdIcon",P.getTwoToneColor=T,P.setTwoToneColor=k;var I=P},89705:function(e,t,n){"use strict";n.d(t,{Z:function(){return u}});var r=n(1413),i=n(67294),o={icon:{tag:"svg",attrs:{viewBox:"64 64 896 896",focusable:"false"},children:[{tag:"path",attrs:{d:"M176 511a56 56 0 10112 0 56 56 0 10-112 0zm280 0a56 56 0 10112 0 56 56 0 10-112 0zm280 0a56 56 0 10112 0 56 56 0 10-112 0z"}}]},name:"ellipsis",theme:"outlined"},a=n(98615),s=function(e,t){return i.createElement(a.Z,(0,r.Z)((0,r.Z)({},e),{},{ref:t,icon:o}))};s.displayName="EllipsisOutlined";var u=i.forwardRef(s)},18073:function(e,t,n){"use strict";n.d(t,{Z:function(){return u}});var r=n(1413),i=n(67294),o={icon:{tag:"svg",attrs:{viewBox:"64 64 896 896",focusable:"false"},children:[{tag:"path",attrs:{d:"M765.7 486.8L314.9 134.7A7.97 7.97 0 00302 141v77.3c0 4.9 2.3 9.6 6.1 12.6l360 281.1-360 281.1c-3.9 3-6.1 7.7-6.1 12.6V883c0 6.7 7.7 10.4 12.9 6.3l450.8-352.1a31.96 31.96 0 000-50.4z"}}]},name:"right",theme:"outlined"},a=n(98615),s=function(e,t){return i.createElement(a.Z,(0,r.Z)((0,r.Z)({},e),{},{ref:t,icon:o}))};s.displayName="RightOutlined";var u=i.forwardRef(s)},92074:function(e,t,n){"use strict";var r=n(64836),i=n(75263);Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var o=r(n(42122)),a=r(n(27424)),s=r(n(38416)),u=r(n(70215)),c=i(n(67294)),l=r(n(94184)),f=r(n(98399)),d=r(n(95160)),p=n(46768),h=n(72479),m=["className","icon","spin","rotate","tabIndex","onClick","twoToneColor"];(0,p.setTwoToneColor)("#1890ff");var v=c.forwardRef(function(e,t){var n,r=e.className,i=e.icon,p=e.spin,v=e.rotate,g=e.tabIndex,y=e.onClick,b=e.twoToneColor,E=(0,u.default)(e,m),w=c.useContext(f.default).prefixCls,x=void 0===w?"anticon":w,_=(0,l.default)(x,(n={},(0,s.default)(n,"".concat(x,"-").concat(i.name),!!i.name),(0,s.default)(n,"".concat(x,"-spin"),!!p||"loading"===i.name),n),r),S=g;void 0===S&&y&&(S=-1);var C=v?{msTransform:"rotate(".concat(v,"deg)"),transform:"rotate(".concat(v,"deg)")}:void 0,A=(0,h.normalizeTwoToneColors)(b),D=(0,a.default)(A,2),O=D[0],k=D[1];return c.createElement("span",(0,o.default)((0,o.default)({role:"img","aria-label":i.name},E),{},{ref:t,tabIndex:S,onClick:y,className:_}),c.createElement(d.default,{icon:i,primaryColor:O,secondaryColor:k,style:C}))});v.displayName="AntdIcon",v.getTwoToneColor=p.getTwoToneColor,v.setTwoToneColor=p.setTwoToneColor;var g=v;t.default=g},98399:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var r=(0,n(67294).createContext)({});t.default=r},95160:function(e,t,n){"use strict";var r=n(64836);Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var i=r(n(70215)),o=r(n(42122)),a=n(72479),s=["icon","className","onClick","style","primaryColor","secondaryColor"],u={primaryColor:"#333",secondaryColor:"#E6E6E6",calculated:!1};function c(e){var t=e.primaryColor,n=e.secondaryColor;u.primaryColor=t,u.secondaryColor=n||(0,a.getSecondaryColor)(t),u.calculated=!!n}function l(){return(0,o.default)({},u)}var f=function(e){var t=e.icon,n=e.className,r=e.onClick,c=e.style,l=e.primaryColor,f=e.secondaryColor,d=(0,i.default)(e,s),p=u;if(l&&(p={primaryColor:l,secondaryColor:f||(0,a.getSecondaryColor)(l)}),(0,a.useInsertStyles)(),(0,a.warning)((0,a.isIconDefinition)(t),"icon should be icon definiton, but got ".concat(t)),!(0,a.isIconDefinition)(t))return null;var h=t;return h&&"function"==typeof h.icon&&(h=(0,o.default)((0,o.default)({},h),{},{icon:h.icon(p.primaryColor,p.secondaryColor)})),(0,a.generate)(h.icon,"svg-".concat(h.name),(0,o.default)({className:n,onClick:r,style:c,"data-icon":h.name,width:"1em",height:"1em",fill:"currentColor","aria-hidden":"true"},d))};f.displayName="IconReact",f.getTwoToneColors=l,f.setTwoToneColors=c;var d=f;t.default=d},46768:function(e,t,n){"use strict";var r=n(64836);Object.defineProperty(t,"__esModule",{value:!0}),t.setTwoToneColor=s,t.getTwoToneColor=u;var i=r(n(27424)),o=r(n(95160)),a=n(72479);function s(e){var t=(0,a.normalizeTwoToneColors)(e),n=(0,i.default)(t,2),r=n[0],s=n[1];return o.default.setTwoToneColors({primaryColor:r,secondaryColor:s})}function u(){var e=o.default.getTwoToneColors();return e.calculated?[e.primaryColor,e.secondaryColor]:e.primaryColor}},45799:function(e,t,n){"use strict";var r=n(75263),i=n(64836);Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var o=i(n(42122)),a=r(n(67294)),s=i(n(25413)),u=i(n(92074)),c=function(e,t){return a.createElement(u.default,(0,o.default)((0,o.default)({},e),{},{ref:t,icon:s.default}))};c.displayName="BarsOutlined";var l=a.forwardRef(c);t.default=l},95183:function(e,t,n){"use strict";var r=n(75263),i=n(64836);Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var o=i(n(42122)),a=r(n(67294)),s=i(n(85368)),u=i(n(92074)),c=function(e,t){return a.createElement(u.default,(0,o.default)((0,o.default)({},e),{},{ref:t,icon:s.default}))};c.displayName="CheckCircleFilled";var l=a.forwardRef(c);t.default=l},48138:function(e,t,n){"use strict";var r=n(75263),i=n(64836);Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var o=i(n(42122)),a=r(n(67294)),s=i(n(16976)),u=i(n(92074)),c=function(e,t){return a.createElement(u.default,(0,o.default)((0,o.default)({},e),{},{ref:t,icon:s.default}))};c.displayName="CheckCircleOutlined";var l=a.forwardRef(c);t.default=l},86266:function(e,t,n){"use strict";var r=n(75263),i=n(64836);Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var o=i(n(42122)),a=r(n(67294)),s=i(n(67303)),u=i(n(92074)),c=function(e,t){return a.createElement(u.default,(0,o.default)((0,o.default)({},e),{},{ref:t,icon:s.default}))};c.displayName="CloseCircleFilled";var l=a.forwardRef(c);t.default=l},92018:function(e,t,n){"use strict";var r=n(75263),i=n(64836);Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var o=i(n(42122)),a=r(n(67294)),s=i(n(77384)),u=i(n(92074)),c=function(e,t){return a.createElement(u.default,(0,o.default)((0,o.default)({},e),{},{ref:t,icon:s.default}))};c.displayName="CloseCircleOutlined";var l=a.forwardRef(c);t.default=l},83482:function(e,t,n){"use strict";var r=n(75263),i=n(64836);Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var o=i(n(42122)),a=r(n(67294)),s=i(n(79203)),u=i(n(92074)),c=function(e,t){return a.createElement(u.default,(0,o.default)((0,o.default)({},e),{},{ref:t,icon:s.default}))};c.displayName="CloseOutlined";var l=a.forwardRef(c);t.default=l},77998:function(e,t,n){"use strict";var r=n(75263),i=n(64836);Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var o=i(n(42122)),a=r(n(67294)),s=i(n(78515)),u=i(n(92074)),c=function(e,t){return a.createElement(u.default,(0,o.default)((0,o.default)({},e),{},{ref:t,icon:s.default}))};c.displayName="ExclamationCircleFilled";var l=a.forwardRef(c);t.default=l},3855:function(e,t,n){"use strict";var r=n(75263),i=n(64836);Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var o=i(n(42122)),a=r(n(67294)),s=i(n(34950)),u=i(n(92074)),c=function(e,t){return a.createElement(u.default,(0,o.default)((0,o.default)({},e),{},{ref:t,icon:s.default}))};c.displayName="ExclamationCircleOutlined";var l=a.forwardRef(c);t.default=l},40920:function(e,t,n){"use strict";var r=n(75263),i=n(64836);t.Z=void 0;var o=i(n(42122)),a=r(n(67294)),s=i(n(80185)),u=i(n(92074)),c=function(e,t){return a.createElement(u.default,(0,o.default)((0,o.default)({},e),{},{ref:t,icon:s.default}))};c.displayName="FileTextOutlined";var l=a.forwardRef(c);t.Z=l},35438:function(e,t,n){"use strict";var r=n(75263),i=n(64836);Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var o=i(n(42122)),a=r(n(67294)),s=i(n(15369)),u=i(n(92074)),c=function(e,t){return a.createElement(u.default,(0,o.default)((0,o.default)({},e),{},{ref:t,icon:s.default}))};c.displayName="InfoCircleFilled";var l=a.forwardRef(c);t.default=l},34106:function(e,t,n){"use strict";var r=n(75263),i=n(64836);Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var o=i(n(42122)),a=r(n(67294)),s=i(n(20702)),u=i(n(92074)),c=function(e,t){return a.createElement(u.default,(0,o.default)((0,o.default)({},e),{},{ref:t,icon:s.default}))};c.displayName="InfoCircleOutlined";var l=a.forwardRef(c);t.default=l},7500:function(e,t,n){"use strict";var r=n(75263),i=n(64836);Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var o=i(n(42122)),a=r(n(67294)),s=i(n(6594)),u=i(n(92074)),c=function(e,t){return a.createElement(u.default,(0,o.default)((0,o.default)({},e),{},{ref:t,icon:s.default}))};c.displayName="LeftOutlined";var l=a.forwardRef(c);t.default=l},4851:function(e,t,n){"use strict";var r=n(75263),i=n(64836);Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var o=i(n(42122)),a=r(n(67294)),s=i(n(25828)),u=i(n(92074)),c=function(e,t){return a.createElement(u.default,(0,o.default)((0,o.default)({},e),{},{ref:t,icon:s.default}))};c.displayName="LoadingOutlined";var l=a.forwardRef(c);t.default=l},86994:function(e,t,n){"use strict";var r=n(75263),i=n(64836);Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var o=i(n(42122)),a=r(n(67294)),s=i(n(77307)),u=i(n(92074)),c=function(e,t){return a.createElement(u.default,(0,o.default)((0,o.default)({},e),{},{ref:t,icon:s.default}))};c.displayName="RightOutlined";var l=a.forwardRef(c);t.default=l},72479:function(e,t,n){"use strict";var r=n(75263),i=n(64836);Object.defineProperty(t,"__esModule",{value:!0}),t.warning=d,t.isIconDefinition=p,t.normalizeAttrs=h,t.generate=m,t.getSecondaryColor=v,t.normalizeTwoToneColors=g,t.useInsertStyles=t.iconStyles=t.svgBaseProps=void 0;var o=i(n(42122)),a=i(n(18698)),s=n(92138),u=r(n(67294)),c=i(n(45520)),l=n(93399),f=i(n(98399));function d(e,t){(0,c.default)(e,"[@ant-design/icons] ".concat(t))}function p(e){return"object"===(0,a.default)(e)&&"string"==typeof e.name&&"string"==typeof e.theme&&("object"===(0,a.default)(e.icon)||"function"==typeof e.icon)}function h(){var e=arguments.length>0&&void 0!==arguments[0]?arguments[0]:{};return Object.keys(e).reduce(function(t,n){var r=e[n];return"class"===n?(t.className=r,delete t.class):t[n]=r,t},{})}function m(e,t,n){return n?u.default.createElement(e.tag,(0,o.default)((0,o.default)({key:t},h(e.attrs)),n),(e.children||[]).map(function(n,r){return m(n,"".concat(t,"-").concat(e.tag,"-").concat(r))})):u.default.createElement(e.tag,(0,o.default)({key:t},h(e.attrs)),(e.children||[]).map(function(n,r){return m(n,"".concat(t,"-").concat(e.tag,"-").concat(r))}))}function v(e){return(0,s.generate)(e)[0]}function g(e){return e?Array.isArray(e)?e:[e]:[]}var y={width:"1em",height:"1em",fill:"currentColor","aria-hidden":"true",focusable:"false"};t.svgBaseProps=y;var b="\n.anticon {\n display: inline-block;\n color: inherit;\n font-style: normal;\n line-height: 0;\n text-align: center;\n text-transform: none;\n vertical-align: -0.125em;\n text-rendering: optimizeLegibility;\n -webkit-font-smoothing: antialiased;\n -moz-osx-font-smoothing: grayscale;\n}\n\n.anticon > * {\n line-height: 1;\n}\n\n.anticon svg {\n display: inline-block;\n}\n\n.anticon::before {\n display: none;\n}\n\n.anticon .anticon-icon {\n display: block;\n}\n\n.anticon[tabindex] {\n cursor: pointer;\n}\n\n.anticon-spin::before,\n.anticon-spin {\n display: inline-block;\n -webkit-animation: loadingCircle 1s infinite linear;\n animation: loadingCircle 1s infinite linear;\n}\n\n@-webkit-keyframes loadingCircle {\n 100% {\n -webkit-transform: rotate(360deg);\n transform: rotate(360deg);\n }\n}\n\n@keyframes loadingCircle {\n 100% {\n -webkit-transform: rotate(360deg);\n transform: rotate(360deg);\n }\n}\n";t.iconStyles=b;var E=function(){var e=arguments.length>0&&void 0!==arguments[0]?arguments[0]:b,t=(0,u.useContext)(f.default).csp;(0,u.useEffect)(function(){(0,l.updateCSS)(e,"@ant-design-icons",{prepend:!0,csp:t})},[])};t.useInsertStyles=E},97225:function(e,t,n){"use strict";n.r(t),n.d(t,{AWSCloudWatchProvider:function(){return fc},AWS_CLOUDWATCH_BASE_BUFFER_SIZE:function(){return tq},AWS_CLOUDWATCH_CATEGORY:function(){return tX},AWS_CLOUDWATCH_MAX_BATCH_EVENT_SIZE:function(){return tK},AWS_CLOUDWATCH_MAX_EVENT_SIZE:function(){return tY},AWS_CLOUDWATCH_PROVIDER_NAME:function(){return tJ},Amplify:function(){return t7},AmplifyClass:function(){return t9},AppState:function(){return ff},AsyncStorage:function(){return fd},ClientDevice:function(){return nc},ConsoleLogger:function(){return t3},Constants:function(){return fF},Credentials:function(){return fr},CredentialsClass:function(){return fn},DateUtils:function(){return nK},FacebookOAuth:function(){return u8},GoogleOAuth:function(){return u3},Hub:function(){return ny},I18n:function(){return nS},INTERNAL_AWS_APPSYNC_PUBSUB_PROVIDER:function(){return fC},INTERNAL_AWS_APPSYNC_REALTIME_PUBSUB_PROVIDER:function(){return fA},JS:function(){return nB},Linking:function(){return fl},Logger:function(){return t3},MemoryStorage:function(){return uF},Mutex:function(){return fO},NO_CREDS_ERROR_STRING:function(){return tQ},NonRetryableError:function(){return uz},Parser:function(){return ru},Platform:function(){return nt},RETRY_ERROR_CODES:function(){return t0},Reachability:function(){return fP},ServiceWorker:function(){return fp},Signer:function(){return ri},StorageHelper:function(){return uR},USER_AGENT_HEADER:function(){return fD},UniversalStorage:function(){return f_},browserOrNode:function(){return nF},default:function(){return fR},filenameToContentType:function(){return nT},generateRandomString:function(){return nP},getAmplifyUserAgent:function(){return nn},invalidParameter:function(){return nf},isEmpty:function(){return nD},isStrictObject:function(){return nj},isTextFile:function(){return nN},isWebWorker:function(){return nM},jitteredBackoff:function(){return uG},jitteredExponentialRetry:function(){return uq},makeQuerablePromise:function(){return nI},missingConfig:function(){return nl},objectLessAttributes:function(){return nk},parseMobileHubConfig:function(){return rs},retry:function(){return uW},sortByField:function(){return nO},transferKeyToLowerCase:function(){return nR},transferKeyToUpperCase:function(){return nL},urlSafeDecode:function(){return fM},urlSafeEncode:function(){return fI}});var r,i,o,a,s,u,c,l,f,d,p,h,m,v,g,y,b,E,w,x,_,S,C,A,D,O,k,T,N,P,I,M,F,R,L,j,B,U,Z,V,z,H,W,$,G,q,K,Y,X,J,Q,ee,et,en,er,ei,eo,ea,es,eu,ec,el,ef,ed,ep,eh,em,ev,eg,ey,eb,eE,ew,ex,e_,eS,eC,eA,eD,eO,ek,eT,eN,eP,eI,eM,eF,eR,eL,ej,eB,eU,eZ,eV,ez,eH,eW,e$,eG,eq,eK,eY,eX,eJ,eQ,e0,e1,e2,e4,e6,e3,e8,e5,e9,e7,te,tt,tn,tr,ti,to,ta,ts,tu,tc,tl,tf,td,tp,th,tm,tv,tg,ty,tb,tE,tw,tx,t_,tS,tC,tA,tD,tO,tk,tT,tN,tP,tI,tM,tF,tR,tL,tj,tB,tU,tZ,tV,tz,tH,tW,t$,tG,tq=26,tK=1048576,tY=256e3,tX="Logging",tJ="AWSCloudWatch",tQ="No credentials",t0=["ResourceNotFoundException","InvalidSequenceTokenException",],t1=function(e){var t="function"==typeof Symbol&&Symbol.iterator,n=t&&e[t],r=0;if(n)return n.call(e);if(e&&"number"==typeof e.length)return{next:function(){return e&&r>=e.length&&(e=void 0),{value:e&&e[r++],done:!e}}};throw TypeError(t?"Object is not iterable.":"Symbol.iterator is not defined.")},t2=function(e,t){var n="function"==typeof Symbol&&e[Symbol.iterator];if(!n)return e;var r,i,o=n.call(e),a=[];try{for(;(void 0===t||t-- >0)&&!(r=o.next()).done;)a.push(r.value)}catch(s){i={error:s}}finally{try{r&&!r.done&&(n=o.return)&&n.call(o)}finally{if(i)throw i.error}}return a},t4=function(){for(var e=[],t=0;t=u){var c=console.log.bind(console);t===r.ERROR&&console.error&&(c=console.error.bind(console)),t===r.WARN&&console.warn&&(c=console.warn.bind(console));var l="["+t+"] "+this._ts()+" "+this.name,f="";if(1===o.length&&"string"==typeof o[0])c(f=l+" - "+o[0]);else if(1===o.length)f=l+" "+o[0],c(l,o[0]);else if("string"==typeof o[0]){var d=o.slice(1);1===d.length&&(d=d[0]),f=l+" - "+o[0]+" "+d,c(l+" - "+o[0],d)}else f=l+" "+o,c(l,o);try{for(var p=t1(this._pluggables),h=p.next();!h.done;h=p.next()){var m=h.value,v={message:f,timestamp:Date.now()};m.pushLogs([v])}}catch(g){n={error:g}}finally{try{h&&!h.done&&(i=p.return)&&i.call(p)}finally{if(n)throw n.error}}}},e.prototype.log=function(){for(var e=[],t=0;t0)&&!(r=o.next()).done;)a.push(r.value)}catch(s){i={error:s}}finally{try{r&&!r.done&&(n=o.return)&&n.call(o)}finally{if(i)throw i.error}}return a},t5=new t3("Amplify"),t9=function(){function e(){this._components=[],this._config={},this._modules={},this.Auth=null,this.Analytics=null,this.API=null,this.Credentials=null,this.Storage=null,this.I18n=null,this.Cache=null,this.PubSub=null,this.Interactions=null,this.Pushnotification=null,this.UI=null,this.XR=null,this.Predictions=null,this.DataStore=null,this.Geo=null,this.Logger=t3,this.ServiceWorker=null}return e.prototype.register=function(e){t5.debug("component registered in amplify",e),this._components.push(e),"function"==typeof e.getModuleName?(this._modules[e.getModuleName()]=e,this[e.getModuleName()]=e):t5.debug("no getModuleName method for component",e),e.configure(this._config)},e.prototype.configure=function(e){var t=this;return e&&(this._config=Object.assign(this._config,e),t5.debug("amplify config",this._config),Object.entries(this._modules).forEach(function(e){var n=t8(e,2),r=(n[0],n[1]);Object.keys(r).forEach(function(e){t._modules[e]&&(r[e]=t._modules[e])})}),this._components.map(function(e){e.configure(t._config)})),this._config},e.prototype.addPluggable=function(e){e&&e.getCategory&&"function"==typeof e.getCategory&&this._components.map(function(t){t.addPluggable&&"function"==typeof t.addPluggable&&t.addPluggable(e)})},e}(),t7=new t9,ne="aws-amplify/4.5.8",nt={userAgent:ne+" js",product:"",navigator:null,isReactNative:!1};"undefined"!=typeof navigator&&navigator.product&&((nt.product=navigator.product||"",nt.navigator=navigator||null,"ReactNative"===navigator.product)?(nt.userAgent=ne+" react-native",nt.isReactNative=!0):(nt.userAgent=ne+" js",nt.isReactNative=!1));var nn=function(){return nt.userAgent},nr=new t3("ClientDevice_Browser");function ni(){return"undefined"==typeof window?{}:no()}function no(){if("undefined"==typeof window)return nr.warn("No window object available to get browser client info"),{};var e=window.navigator;if(!e)return nr.warn("No navigator object available to get browser client info"),{};var t=e.platform,n=e.product,r=e.vendor,i=e.userAgent,o=e.language,a=nu(i),s=ns();return{platform:t,make:n||r,model:a.type,version:a.version,appVersion:[a.type,a.version].join("/"),language:o,timezone:s}}function na(){return"undefined"==typeof window?(nr.warn("No window object available to get browser client info"),{width:320,height:320}):{width:window.innerWidth,height:window.innerHeight}}function ns(){var e=/\(([A-Za-z\s].*)\)/.exec(new Date().toString());return e&&e[1]||""}function nu(e){var t=/.+(Opera[\s[A-Z]*|OPR[\sA-Z]*)\/([0-9\.]+).*/i.exec(e);if(t)return{type:t[1],version:t[2]};var n=/.+(Trident|Edge)\/([0-9\.]+).*/i.exec(e);if(n)return{type:n[1],version:n[2]};var r=/.+(Chrome|Firefox|FxiOS)\/([0-9\.]+).*/i.exec(e);if(r)return{type:r[1],version:r[2]};var i=/.+(Safari)\/([0-9\.]+).*/i.exec(e);if(i)return{type:i[1],version:i[2]};var o=/.+(AppleWebKit)\/([0-9\.]+).*/i.exec(e);if(o)return{type:o[1],version:o[2]};var a=/.*([A-Z]+)\/([0-9\.]+).*/i.exec(e);return a?{type:a[1],version:a[2]}:{type:"",version:""}}var nc=function(){function e(){}return e.clientInfo=function(){return ni()},e.dimension=function(){return na()},e}();function nl(e){return Error("Missing config value of "+e)}function nf(e){return Error("Invalid parameter value of "+e)}var nd=function(){return(nd=Object.assign||function(e){for(var t,n=1,r=arguments.length;n0)&&!(r=o.next()).done;)a.push(r.value)}catch(s){i={error:s}}finally{try{r&&!r.done&&(n=o.return)&&n.call(o)}finally{if(i)throw i.error}}return a},nh=function(){for(var e=[],t=0;t-1&&r!==nv&&nm.warn("WARNING: "+e+" is protected and dispatching on it can have unintended consequences");var i={channel:e,payload:nd({},t),source:n,patternInfo:[]};try{this._toListeners(i)}catch(o){nm.error(o)}},e.prototype.listen=function(e,t,n){var r,i=this;if(void 0===n&&(n="noname"),ng(t))nm.warn("WARNING onHubCapsule is Deprecated. Please pass in a callback."),r=t.onHubCapsule.bind(t);else if("function"!=typeof t)throw Error("No callback supplied to Hub");else r=t;if(e instanceof RegExp)this.patterns.push({pattern:e,callback:r});else{var o=this.listeners[e];o||(o=[],this.listeners[e]=o),o.push({name:n,callback:r})}return function(){i.remove(e,r)}},e.prototype._toListeners=function(e){var t=e.channel,n=e.payload,r=this.listeners[t];if(r&&r.forEach(function(r){nm.debug("Dispatching to "+t+" with ",n);try{r.callback(e)}catch(i){nm.error(i)}}),this.patterns.length>0){if(!n.message){nm.warn("Cannot perform pattern matching without a message key");return}var i=n.message;this.patterns.forEach(function(t){var n=i.match(t.pattern);if(n){var r=np(n).slice(1),o=nd(nd({},e),{patternInfo:r});try{t.callback(o)}catch(a){nm.error(a)}}})}},e}())("__default__"),nb=new t3("I18n"),nE=function(){function e(e){this._options=null,this._lang=null,this._dict={},this._options=Object.assign({},e),this._lang=this._options.language,!this._lang&&"undefined"!=typeof window&&window&&window.navigator&&(this._lang=window.navigator.language),nb.debug(this._lang)}return e.prototype.setLanguage=function(e){this._lang=e},e.prototype.get=function(e,t){if(void 0===t&&(t=void 0),!this._lang)return void 0!==t?t:e;var n=this._lang,r=this.getByLanguage(e,n);return r||((n.indexOf("-")>0&&(r=this.getByLanguage(e,n.split("-")[0])),r)?r:void 0!==t?t:e)},e.prototype.getByLanguage=function(e,t,n){if(void 0===n&&(n=null),!t)return n;var r=this._dict[t];return r?r[e]:n},e.prototype.putVocabulariesForLanguage=function(e,t){var n=this._dict[e];n||(n=this._dict[e]={}),Object.assign(n,t)},e.prototype.putVocabularies=function(e){var t=this;Object.keys(e).map(function(n){t.putVocabulariesForLanguage(n,e[n])})},e}(),nw=new t3("I18n"),nx=null,n_=null,nS=function(){function e(){}return e.configure=function(t){return nw.debug("configure I18n"),t&&(nx=Object.assign({},nx,t.I18n||t),e.createInstance()),nx},e.getModuleName=function(){return"I18n"},e.createInstance=function(){nw.debug("create I18n instance"),!n_&&(n_=new nE(nx))},e.setLanguage=function(t){return e.checkConfig(),n_.setLanguage(t)},e.get=function(t,n){return e.checkConfig()?n_.get(t,n):void 0===n?t:n},e.putVocabulariesForLanguage=function(t,n){return e.checkConfig(),n_.putVocabulariesForLanguage(t,n)},e.putVocabularies=function(t){return e.checkConfig(),n_.putVocabularies(t)},e.checkConfig=function(){return n_||(n_=new nE(nx)),!0},e}();t7.register(nS);for(var nC=n(83454),nA=[{type:"text/plain",ext:"txt"},{type:"text/html",ext:"html"},{type:"text/javascript",ext:"js"},{type:"text/css",ext:"css"},{type:"text/csv",ext:"csv"},{type:"text/yaml",ext:"yml"},{type:"text/yaml",ext:"yaml"},{type:"text/calendar",ext:"ics"},{type:"text/calendar",ext:"ical"},{type:"image/apng",ext:"apng"},{type:"image/bmp",ext:"bmp"},{type:"image/gif",ext:"gif"},{type:"image/x-icon",ext:"ico"},{type:"image/x-icon",ext:"cur"},{type:"image/jpeg",ext:"jpg"},{type:"image/jpeg",ext:"jpeg"},{type:"image/jpeg",ext:"jfif"},{type:"image/jpeg",ext:"pjp"},{type:"image/jpeg",ext:"pjpeg"},{type:"image/png",ext:"png"},{type:"image/svg+xml",ext:"svg"},{type:"image/tiff",ext:"tif"},{type:"image/tiff",ext:"tiff"},{type:"image/webp",ext:"webp"},{type:"application/json",ext:"json"},{type:"application/xml",ext:"xml"},{type:"application/x-sh",ext:"sh"},{type:"application/zip",ext:"zip"},{type:"application/x-rar-compressed",ext:"rar"},{type:"application/x-tar",ext:"tar"},{type:"application/x-bzip",ext:"bz"},{type:"application/x-bzip2",ext:"bz2"},{type:"application/pdf",ext:"pdf"},{type:"application/java-archive",ext:"jar"},{type:"application/msword",ext:"doc"},{type:"application/vnd.ms-excel",ext:"xls"},{type:"application/vnd.ms-excel",ext:"xlsx"},{type:"message/rfc822",ext:"eml"},],nD=function(e){return void 0===e&&(e={}),0===Object.keys(e).length},nO=function(e,t,n){if(!e||!e.sort)return!1;var r=n&&"desc"===n?-1:1;return e.sort(function(e,n){var i=e[t],o=n[t];return void 0===o?void 0===i?0:1*r:void 0===i||io?1*r:0}),!0},nk=function(e,t){var n=Object.assign({},e);return t&&("string"==typeof t?delete n[t]:t.forEach(function(e){delete n[e]})),n},nT=function(e,t){void 0===t&&(t="application/octet-stream");var n=e.toLowerCase(),r=nA.filter(function(e){return n.endsWith("."+e.ext)});return r.length>0?r[0].type:t},nN=function(e){var t=e.toLowerCase();return!!t.startsWith("text/")||"application/json"===t||"application/xml"===t||"application/sh"===t},nP=function(){for(var e="",t="0123456789abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ",n=32;n>0;n-=1)e+=t[Math.floor(Math.random()*t.length)];return e},nI=function(e){if(e.isResolved)return e;var t=!0,n=!1,r=!1,i=e.then(function(e){return r=!0,t=!1,e},function(e){throw n=!0,t=!1,e});return i.isFullfilled=function(){return r},i.isPending=function(){return t},i.isRejected=function(){return n},i},nM=function(){if("undefined"==typeof self)return!1;var e=self;return void 0!==e.WorkerGlobalScope&&self instanceof e.WorkerGlobalScope},nF=function(){var e;return{isBrowser:"undefined"!=typeof window&&void 0!==window.document,isNode:void 0!==nC&&null!=nC.versions&&null!=nC.versions.node}},nR=function(e,t,n){if(void 0===t&&(t=[]),void 0===n&&(n=[]),!nj(e))return e;var r={};for(var i in e)e.hasOwnProperty(i)&&(r[t.includes(i)?i:i[0].toLowerCase()+i.slice(1)]=n.includes(i)?e[i]:nR(e[i],t,n));return r},nL=function(e,t,n){if(void 0===t&&(t=[]),void 0===n&&(n=[]),!nj(e))return e;var r={};for(var i in e)e.hasOwnProperty(i)&&(r[t.includes(i)?i:i[0].toUpperCase()+i.slice(1)]=n.includes(i)?e[i]:nL(e[i],t,n));return r},nj=function(e){return e instanceof Object&&!(e instanceof Array)&&!(e instanceof Function)&&!(e instanceof Number)&&!(e instanceof String)&&!(e instanceof Boolean)},nB=function(){function e(){}return e.isEmpty=nD,e.sortByField=nO,e.objectLessAttributes=nk,e.filenameToContentType=nT,e.isTextFile=nN,e.generateRandomString=nP,e.makeQuerablePromise=nI,e.isWebWorker=nM,e.browserOrNode=nF,e.transferKeyToLowerCase=nR,e.transferKeyToUpperCase=nL,e.isStrictObject=nj,e}(),nU=n(36051),nZ={},nV={},nz=0;nz<256;nz++){var nH=nz.toString(16).toLowerCase();1===nH.length&&(nH="0"+nH),nZ[nz]=nH,nV[nH]=nz}function nW(e){for(var t="",n=0;n0)&&!(r=o.next()).done;)a.push(r.value)}catch(s){i={error:s}}finally{try{r&&!r.done&&(n=o.return)&&n.call(o)}finally{if(i)throw i.error}}return a},nq=3e5,nK={clockOffset:0,getDateWithClockOffset:function(){return nK.clockOffset?new Date(new Date().getTime()+nK.clockOffset):new Date},getClockOffset:function(){return nK.clockOffset},getHeaderStringFromDate:function(e){return void 0===e&&(e=nK.getDateWithClockOffset()),e.toISOString().replace(/[:\-]|\.\d{3}/g,"")},getDateFromHeaderString:function(e){var t=nG(e.match(/^(\d{4})(\d{2})(\d{2})T(\d{2})(\d{2})(\d{2}).+/),7),n=t[1],r=t[2],i=t[3],o=t[4],a=t[5],s=t[6];return new Date(Date.UTC(Number(n),Number(r)-1,Number(i),Number(o),Number(a),Number(s)))},isClockSkewed:function(e){return Math.abs(e.getTime()-nK.getDateWithClockOffset().getTime())>=nq},isClockSkewError:function(e){if(!e.response||!e.response.headers)return!1;var t=e.response.headers;return Boolean(["BadRequestException","InvalidSignatureException"].includes(t["x-amzn-errortype"])&&(t.date||t.Date))},setClockOffset:function(e){nK.clockOffset=e}},nY=function(){return(nY=Object.assign||function(e){for(var t,n=1,r=arguments.length;nt.indexOf(r)&&(n[r]=e[r]);if(null!=e&&"function"==typeof Object.getOwnPropertySymbols)for(var i=0,r=Object.getOwnPropertySymbols(e);it.indexOf(r[i])&&Object.prototype.propertyIsEnumerable.call(e,r[i])&&(n[r[i]]=e[r[i]]);return n},nJ=new t3("Signer"),nQ="AWS4-HMAC-SHA256",n0="iotdevicegateway",n1=function(e,t){var n=new nU.Sha256(e);return n.update(t),n.digestSync()},n2=function(e){var t=e||"",n=new nU.Sha256;return n.update(t),nW(n.digestSync())},n4=function(e){return e.replace(/[!'()*]/g,function(e){return"%"+e.charCodeAt(0).toString(16).toUpperCase()})},n6=function(e){return e&&0!==e.length?e.split("&").map(function(e){var t=e.split("=");if(1===t.length)return e;var n=n4(t[1]);return t[0]+"="+n}).sort(function(e,t){var n=e.split("=")[0],r=t.split("=")[0];return n===r?e0&&i[i.length-1])&&(6===o[0]||2===o[0])){a=0;continue}if(3===o[0]&&(!i||o[1]>i[0]&&o[1]0)&&!(r=o.next()).done;)a.push(r.value)}catch(s){i={error:s}}finally{try{r&&!r.done&&(n=o.return)&&n.call(o)}finally{if(i)throw i.error}}return a}(o1=i||(i={})).filterSensitiveLog=function(e){return rf({},e)},(o2=o||(o={})).filterSensitiveLog=function(e){return rf({},e)},(o4=a||(a={})).filterSensitiveLog=function(e){return rf({},e)},(o6=s||(s={})).filterSensitiveLog=function(e){return rf({},e)},(o3=u||(u={})).filterSensitiveLog=function(e){return rf({},e)},(o8=c||(c={})).filterSensitiveLog=function(e){return rf({},e)},(o5=l||(l={})).filterSensitiveLog=function(e){return rf({},e)},(o9=f||(f={})).filterSensitiveLog=function(e){return rf({},e)},(o7=d||(d={})).filterSensitiveLog=function(e){return rf({},e)},(ae=p||(p={})).filterSensitiveLog=function(e){return rf({},e)},(at=h||(h={})).filterSensitiveLog=function(e){return rf({},e)},(an=m||(m={})).filterSensitiveLog=function(e){return rf({},e)},(ar=v||(v={})).filterSensitiveLog=function(e){return rf({},e)},(ai=g||(g={})).filterSensitiveLog=function(e){return rf({},e)},(ao=y||(y={})).filterSensitiveLog=function(e){return rf({},e)},(aa=b||(b={})).filterSensitiveLog=function(e){return rf({},e)},(as=E||(E={})).filterSensitiveLog=function(e){return rf({},e)},(au=w||(w={})).filterSensitiveLog=function(e){return rf({},e)},(ac=x||(x={})).filterSensitiveLog=function(e){return rf({},e)},(al=_||(_={})).filterSensitiveLog=function(e){return rf({},e)},(af=S||(S={})).filterSensitiveLog=function(e){return rf({},e)},(ad=C||(C={})).filterSensitiveLog=function(e){return rf({},e)},(ap=A||(A={})).filterSensitiveLog=function(e){return rf({},e)},(ah=D||(D={})).filterSensitiveLog=function(e){return rf({},e)},(am=O||(O={})).filterSensitiveLog=function(e){return rf({},e)},(av=k||(k={})).filterSensitiveLog=function(e){return rf({},e)},(ag=T||(T={})).CANCELLED="CANCELLED",ag.COMPLETED="COMPLETED",ag.FAILED="FAILED",ag.PENDING="PENDING",ag.PENDING_CANCEL="PENDING_CANCEL",ag.RUNNING="RUNNING",(ay=N||(N={})).filterSensitiveLog=function(e){return rf({},e)},(ab=P||(P={})).filterSensitiveLog=function(e){return rf({},e)},(aE=I||(I={})).filterSensitiveLog=function(e){return rf({},e)},(aw=M||(M={})).filterSensitiveLog=function(e){return rf({},e)},(ax=F||(F={})).filterSensitiveLog=function(e){return rf({},e)},(a_=R||(R={})).filterSensitiveLog=function(e){return rf({},e)},(aS=L||(L={})).filterSensitiveLog=function(e){return rf({},e)},(aC=j||(j={})).filterSensitiveLog=function(e){return rf({},e)},(aA=B||(B={})).LastEventTime="LastEventTime",aA.LogStreamName="LogStreamName",(aD=U||(U={})).filterSensitiveLog=function(e){return rf({},e)},(aO=Z||(Z={})).filterSensitiveLog=function(e){return rf({},e)},(ak=V||(V={})).filterSensitiveLog=function(e){return rf({},e)},(aT=z||(z={})).filterSensitiveLog=function(e){return rf({},e)},(aN=H||(H={})).filterSensitiveLog=function(e){return rf({},e)},(aP=W||(W={})).filterSensitiveLog=function(e){return rf({},e)},(aI=$||($={})).filterSensitiveLog=function(e){return rf({},e)},(aM=G||(G={})).Cancelled="Cancelled",aM.Complete="Complete",aM.Failed="Failed",aM.Running="Running",aM.Scheduled="Scheduled",(aF=q||(q={})).filterSensitiveLog=function(e){return rf({},e)},(aR=K||(K={})).filterSensitiveLog=function(e){return rf({},e)},(aL=Y||(Y={})).filterSensitiveLog=function(e){return rf({},e)},(aj=X||(X={})).filterSensitiveLog=function(e){return rf({},e)},(aB=J||(J={})).filterSensitiveLog=function(e){return rf({},e)},(aU=Q||(Q={})).filterSensitiveLog=function(e){return rf({},e)},(aZ=ee||(ee={})).filterSensitiveLog=function(e){return rf({},e)},(aV=et||(et={})).filterSensitiveLog=function(e){return rf({},e)},(az=en||(en={})).filterSensitiveLog=function(e){return rf({},e)},(aH=er||(er={})).filterSensitiveLog=function(e){return rf({},e)},(aW=ei||(ei={})).ByLogStream="ByLogStream",aW.Random="Random",(a$=eo||(eo={})).filterSensitiveLog=function(e){return rf({},e)},(aG=ea||(ea={})).filterSensitiveLog=function(e){return rf({},e)},(aq=es||(es={})).filterSensitiveLog=function(e){return rf({},e)},(aK=eu||(eu={})).filterSensitiveLog=function(e){return rf({},e)},(aY=ec||(ec={})).filterSensitiveLog=function(e){return rf({},e)},(aX=el||(el={})).filterSensitiveLog=function(e){return rf({},e)},(aJ=ef||(ef={})).filterSensitiveLog=function(e){return rf({},e)},(aQ=ed||(ed={})).filterSensitiveLog=function(e){return rf({},e)},(a0=ep||(ep={})).filterSensitiveLog=function(e){return rf({},e)},(a1=eh||(eh={})).filterSensitiveLog=function(e){return rf({},e)},(a2=em||(em={})).filterSensitiveLog=function(e){return rf({},e)},(a4=ev||(ev={})).filterSensitiveLog=function(e){return rf({},e)},(a6=eg||(eg={})).filterSensitiveLog=function(e){return rf({},e)},(a3=ey||(ey={})).filterSensitiveLog=function(e){return rf({},e)},(a8=eb||(eb={})).filterSensitiveLog=function(e){return rf({},e)},(a5=eE||(eE={})).filterSensitiveLog=function(e){return rf({},e)},(a9=ew||(ew={})).filterSensitiveLog=function(e){return rf({},e)},(a7=ex||(ex={})).filterSensitiveLog=function(e){return rf({},e)},(se=e_||(e_={})).filterSensitiveLog=function(e){return rf({},e)},(st=eS||(eS={})).filterSensitiveLog=function(e){return rf({},e)},(sn=eC||(eC={})).filterSensitiveLog=function(e){return rf({},e)},(sr=eA||(eA={})).filterSensitiveLog=function(e){return rf({},e)},(si=eD||(eD={})).filterSensitiveLog=function(e){return rf({},e)},(so=eO||(eO={})).filterSensitiveLog=function(e){return rf({},e)},(sa=ek||(ek={})).filterSensitiveLog=function(e){return rf({},e)},(ss=eT||(eT={})).filterSensitiveLog=function(e){return rf({},e)},(su=eN||(eN={})).filterSensitiveLog=function(e){return rf({},e)},(sc=eP||(eP={})).filterSensitiveLog=function(e){return rf({},e)},(sl=eI||(eI={})).filterSensitiveLog=function(e){return rf({},e)},(sf=eM||(eM={})).filterSensitiveLog=function(e){return rf({},e)},(sd=eF||(eF={})).filterSensitiveLog=function(e){return rf({},e)},(sp=eR||(eR={})).filterSensitiveLog=function(e){return rf({},e)},(sh=eL||(eL={})).filterSensitiveLog=function(e){return rf({},e)},(sm=ej||(ej={})).filterSensitiveLog=function(e){return rf({},e)},(sv=eB||(eB={})).filterSensitiveLog=function(e){return rf({},e)},(sg=eU||(eU={})).filterSensitiveLog=function(e){return rf({},e)},(sy=eZ||(eZ={})).filterSensitiveLog=function(e){return rf({},e)},(sb=eV||(eV={})).filterSensitiveLog=function(e){return rf({},e)},(sE=ez||(ez={})).filterSensitiveLog=function(e){return rf({},e)},(sw=eH||(eH={})).filterSensitiveLog=function(e){return rf({},e)},(sx=eW||(eW={})).filterSensitiveLog=function(e){return rf({},e)},(s_=e$||(e$={})).filterSensitiveLog=function(e){return rf({},e)},(sS=eG||(eG={})).filterSensitiveLog=function(e){return rf({},e)},(sC=eq||(eq={})).filterSensitiveLog=function(e){return rf({},e)},(sA=eK||(eK={})).filterSensitiveLog=function(e){return rf({},e)},(sD=eY||(eY={})).filterSensitiveLog=function(e){return rf({},e)},(sO=eX||(eX={})).filterSensitiveLog=function(e){return rf({},e)},(sk=eJ||(eJ={})).filterSensitiveLog=function(e){return rf({},e)},(sT=eQ||(eQ={})).filterSensitiveLog=function(e){return rf({},e)};var rm=function(){function e(e){this.statusCode=e.statusCode,this.headers=e.headers||{},this.body=e.body}return e.isInstance=function(e){if(!e)return!1;var t=e;return"number"==typeof t.statusCode&&"object"==typeof t.headers},e}(),rv=n(70655),rg=function(){function e(e){this.method=e.method||"GET",this.hostname=e.hostname||"localhost",this.port=e.port,this.query=e.query||{},this.headers=e.headers||{},this.body=e.body,this.protocol=e.protocol?":"!==e.protocol.substr(-1)?e.protocol+":":e.protocol:"https:",this.path=e.path?"/"!==e.path.charAt(0)?"/"+e.path:e.path:"/"}return e.isInstance=function(e){if(!e)return!1;var t=e;return"method"in t&&"protocol"in t&&"hostname"in t&&"path"in t&&"object"==typeof t.query&&"object"==typeof t.headers},e.prototype.clone=function(){var t=new e((0,rv.__assign)((0,rv.__assign)({},this),{headers:(0,rv.__assign)({},this.headers)}));return t.query&&(t.query=ry(t.query)),t},e}();function ry(e){return Object.keys(e).reduce(function(t,n){var r,i=e[n];return(0,rv.__assign)((0,rv.__assign)({},t),((r={})[n]=Array.isArray(i)?(0,rv.__spread)(i):i,r))},{})}var rb=function(e,t){return rd(void 0,void 0,void 0,function(){var n,r;return rp(this,function(i){return n={"content-type":"application/x-amz-json-1.1","x-amz-target":"Logs_20140328.CreateLogGroup"},r=JSON.stringify(r$(e,t)),[2,iv(t,n,"/",void 0,r)]})})},rE=function(e,t){return rd(void 0,void 0,void 0,function(){var n,r;return rp(this,function(i){return n={"content-type":"application/x-amz-json-1.1","x-amz-target":"Logs_20140328.CreateLogStream"},r=JSON.stringify(rG(e,t)),[2,iv(t,n,"/",void 0,r)]})})},rw=function(e,t){return rd(void 0,void 0,void 0,function(){var n,r;return rp(this,function(i){return n={"content-type":"application/x-amz-json-1.1","x-amz-target":"Logs_20140328.DescribeLogGroups"},r=JSON.stringify(rq(e,t)),[2,iv(t,n,"/",void 0,r)]})})},rx=function(e,t){return rd(void 0,void 0,void 0,function(){var n,r;return rp(this,function(i){return n={"content-type":"application/x-amz-json-1.1","x-amz-target":"Logs_20140328.DescribeLogStreams"},r=JSON.stringify(rK(e,t)),[2,iv(t,n,"/",void 0,r)]})})},r_=function(e,t){return rd(void 0,void 0,void 0,function(){var n,r;return rp(this,function(i){return n={"content-type":"application/x-amz-json-1.1","x-amz-target":"Logs_20140328.GetLogEvents"},r=JSON.stringify(rY(e,t)),[2,iv(t,n,"/",void 0,r)]})})},rS=function(e,t){return rd(void 0,void 0,void 0,function(){var n,r;return rp(this,function(i){return n={"content-type":"application/x-amz-json-1.1","x-amz-target":"Logs_20140328.PutLogEvents"},r=JSON.stringify(rQ(e,t)),[2,iv(t,n,"/",void 0,r)]})})},rC=function(e,t){return rd(void 0,void 0,void 0,function(){var n;return rp(this,function(r){switch(r.label){case 0:if(e.statusCode>=300)return[2,rA(e,t)];return[4,ih(e.body,t)];case 1:return r.sent(),[2,Promise.resolve(n={$metadata:ip(e)})]}})})},rA=function(e,t){return rd(void 0,void 0,void 0,function(){var n,r,i,o,a,s,u,c,l,f,d,p,h;return rp(this,function(m){switch(m.label){case 0:return r=[rf({},e)],h={},[4,ig(e.body,t)];case 1:switch(n=rf.apply(void 0,r.concat([(h.body=m.sent(),h)])),o="UnknownError",a=o=iy(e,n.body)){case"InvalidParameterException":case"com.amazonaws.cloudwatchlogs#InvalidParameterException":return[3,2];case"LimitExceededException":case"com.amazonaws.cloudwatchlogs#LimitExceededException":return[3,4];case"OperationAbortedException":case"com.amazonaws.cloudwatchlogs#OperationAbortedException":return[3,6];case"ResourceAlreadyExistsException":case"com.amazonaws.cloudwatchlogs#ResourceAlreadyExistsException":return[3,8];case"ServiceUnavailableException":case"com.amazonaws.cloudwatchlogs#ServiceUnavailableException":return[3,10]}return[3,12];case 2:return s=[{}],[4,rj(n,t)];case 3:return i=rf.apply(void 0,[rf.apply(void 0,s.concat([m.sent()])),{name:o,$metadata:ip(e)}]),[3,13];case 4:return u=[{}],[4,rU(n,t)];case 5:return i=rf.apply(void 0,[rf.apply(void 0,u.concat([m.sent()])),{name:o,$metadata:ip(e)}]),[3,13];case 6:return c=[{}],[4,rZ(n,t)];case 7:return i=rf.apply(void 0,[rf.apply(void 0,c.concat([m.sent()])),{name:o,$metadata:ip(e)}]),[3,13];case 8:return l=[{}],[4,rV(n,t)];case 9:return i=rf.apply(void 0,[rf.apply(void 0,l.concat([m.sent()])),{name:o,$metadata:ip(e)}]),[3,13];case 10:return f=[{}],[4,rH(n,t)];case 11:return i=rf.apply(void 0,[rf.apply(void 0,f.concat([m.sent()])),{name:o,$metadata:ip(e)}]),[3,13];case 12:o=(d=n.body).code||d.Code||o,i=rf(rf({},d),{name:""+o,message:d.message||d.Message||o,$fault:"client",$metadata:ip(e)}),m.label=13;case 13:return p=i.message||i.Message||o,i.message=p,delete i.Message,[2,Promise.reject(Object.assign(Error(p),i))]}})})},rD=function(e,t){return rd(void 0,void 0,void 0,function(){var n;return rp(this,function(r){switch(r.label){case 0:if(e.statusCode>=300)return[2,rO(e,t)];return[4,ih(e.body,t)];case 1:return r.sent(),[2,Promise.resolve(n={$metadata:ip(e)})]}})})},rO=function(e,t){return rd(void 0,void 0,void 0,function(){var n,r,i,o,a,s,u,c,l,f,d,p;return rp(this,function(h){switch(h.label){case 0:return r=[rf({},e)],p={},[4,ig(e.body,t)];case 1:switch(n=rf.apply(void 0,r.concat([(p.body=h.sent(),p)])),o="UnknownError",a=o=iy(e,n.body)){case"InvalidParameterException":case"com.amazonaws.cloudwatchlogs#InvalidParameterException":return[3,2];case"ResourceAlreadyExistsException":case"com.amazonaws.cloudwatchlogs#ResourceAlreadyExistsException":return[3,4];case"ResourceNotFoundException":case"com.amazonaws.cloudwatchlogs#ResourceNotFoundException":return[3,6];case"ServiceUnavailableException":case"com.amazonaws.cloudwatchlogs#ServiceUnavailableException":return[3,8]}return[3,10];case 2:return s=[{}],[4,rj(n,t)];case 3:return i=rf.apply(void 0,[rf.apply(void 0,s.concat([h.sent()])),{name:o,$metadata:ip(e)}]),[3,11];case 4:return u=[{}],[4,rV(n,t)];case 5:return i=rf.apply(void 0,[rf.apply(void 0,u.concat([h.sent()])),{name:o,$metadata:ip(e)}]),[3,11];case 6:return c=[{}],[4,rz(n,t)];case 7:return i=rf.apply(void 0,[rf.apply(void 0,c.concat([h.sent()])),{name:o,$metadata:ip(e)}]),[3,11];case 8:return l=[{}],[4,rH(n,t)];case 9:return i=rf.apply(void 0,[rf.apply(void 0,l.concat([h.sent()])),{name:o,$metadata:ip(e)}]),[3,11];case 10:o=(f=n.body).code||f.Code||o,i=rf(rf({},f),{name:""+o,message:f.message||f.Message||o,$fault:"client",$metadata:ip(e)}),h.label=11;case 11:return d=i.message||i.Message||o,i.message=d,delete i.Message,[2,Promise.reject(Object.assign(Error(d),i))]}})})},rk=function(e,t){return rd(void 0,void 0,void 0,function(){var n,r,i;return rp(this,function(o){switch(o.label){case 0:if(e.statusCode>=300)return[2,rT(e,t)];return[4,ig(e.body,t)];case 1:return n=o.sent(),r={},r=r2(n,t),[2,Promise.resolve(i=rf({$metadata:ip(e)},r))]}})})},rT=function(e,t){return rd(void 0,void 0,void 0,function(){var n,r,i,o,a,s,u,c,l,f;return rp(this,function(d){switch(d.label){case 0:return r=[rf({},e)],f={},[4,ig(e.body,t)];case 1:switch(n=rf.apply(void 0,r.concat([(f.body=d.sent(),f)])),o="UnknownError",a=o=iy(e,n.body)){case"InvalidParameterException":case"com.amazonaws.cloudwatchlogs#InvalidParameterException":return[3,2];case"ServiceUnavailableException":case"com.amazonaws.cloudwatchlogs#ServiceUnavailableException":return[3,4]}return[3,6];case 2:return s=[{}],[4,rj(n,t)];case 3:return i=rf.apply(void 0,[rf.apply(void 0,s.concat([d.sent()])),{name:o,$metadata:ip(e)}]),[3,7];case 4:return u=[{}],[4,rH(n,t)];case 5:return i=rf.apply(void 0,[rf.apply(void 0,u.concat([d.sent()])),{name:o,$metadata:ip(e)}]),[3,7];case 6:o=(c=n.body).code||c.Code||o,i=rf(rf({},c),{name:""+o,message:c.message||c.Message||o,$fault:"client",$metadata:ip(e)}),d.label=7;case 7:return l=i.message||i.Message||o,i.message=l,delete i.Message,[2,Promise.reject(Object.assign(Error(l),i))]}})})},rN=function(e,t){return rd(void 0,void 0,void 0,function(){var n,r,i;return rp(this,function(o){switch(o.label){case 0:if(e.statusCode>=300)return[2,rP(e,t)];return[4,ig(e.body,t)];case 1:return n=o.sent(),r={},r=r4(n,t),[2,Promise.resolve(i=rf({$metadata:ip(e)},r))]}})})},rP=function(e,t){return rd(void 0,void 0,void 0,function(){var n,r,i,o,a,s,u,c,l,f,d;return rp(this,function(p){switch(p.label){case 0:return r=[rf({},e)],d={},[4,ig(e.body,t)];case 1:switch(n=rf.apply(void 0,r.concat([(d.body=p.sent(),d)])),o="UnknownError",a=o=iy(e,n.body)){case"InvalidParameterException":case"com.amazonaws.cloudwatchlogs#InvalidParameterException":return[3,2];case"ResourceNotFoundException":case"com.amazonaws.cloudwatchlogs#ResourceNotFoundException":return[3,4];case"ServiceUnavailableException":case"com.amazonaws.cloudwatchlogs#ServiceUnavailableException":return[3,6]}return[3,8];case 2:return s=[{}],[4,rj(n,t)];case 3:return i=rf.apply(void 0,[rf.apply(void 0,s.concat([p.sent()])),{name:o,$metadata:ip(e)}]),[3,9];case 4:return u=[{}],[4,rz(n,t)];case 5:return i=rf.apply(void 0,[rf.apply(void 0,u.concat([p.sent()])),{name:o,$metadata:ip(e)}]),[3,9];case 6:return c=[{}],[4,rH(n,t)];case 7:return i=rf.apply(void 0,[rf.apply(void 0,c.concat([p.sent()])),{name:o,$metadata:ip(e)}]),[3,9];case 8:o=(l=n.body).code||l.Code||o,i=rf(rf({},l),{name:""+o,message:l.message||l.Message||o,$fault:"client",$metadata:ip(e)}),p.label=9;case 9:return f=i.message||i.Message||o,i.message=f,delete i.Message,[2,Promise.reject(Object.assign(Error(f),i))]}})})},rI=function(e,t){return rd(void 0,void 0,void 0,function(){var n,r,i;return rp(this,function(o){switch(o.label){case 0:if(e.statusCode>=300)return[2,rM(e,t)];return[4,ig(e.body,t)];case 1:return n=o.sent(),r={},r=r6(n,t),[2,Promise.resolve(i=rf({$metadata:ip(e)},r))]}})})},rM=function(e,t){return rd(void 0,void 0,void 0,function(){var n,r,i,o,a,s,u,c,l,f,d;return rp(this,function(p){switch(p.label){case 0:return r=[rf({},e)],d={},[4,ig(e.body,t)];case 1:switch(n=rf.apply(void 0,r.concat([(d.body=p.sent(),d)])),o="UnknownError",a=o=iy(e,n.body)){case"InvalidParameterException":case"com.amazonaws.cloudwatchlogs#InvalidParameterException":return[3,2];case"ResourceNotFoundException":case"com.amazonaws.cloudwatchlogs#ResourceNotFoundException":return[3,4];case"ServiceUnavailableException":case"com.amazonaws.cloudwatchlogs#ServiceUnavailableException":return[3,6]}return[3,8];case 2:return s=[{}],[4,rj(n,t)];case 3:return i=rf.apply(void 0,[rf.apply(void 0,s.concat([p.sent()])),{name:o,$metadata:ip(e)}]),[3,9];case 4:return u=[{}],[4,rz(n,t)];case 5:return i=rf.apply(void 0,[rf.apply(void 0,u.concat([p.sent()])),{name:o,$metadata:ip(e)}]),[3,9];case 6:return c=[{}],[4,rH(n,t)];case 7:return i=rf.apply(void 0,[rf.apply(void 0,c.concat([p.sent()])),{name:o,$metadata:ip(e)}]),[3,9];case 8:o=(l=n.body).code||l.Code||o,i=rf(rf({},l),{name:""+o,message:l.message||l.Message||o,$fault:"client",$metadata:ip(e)}),p.label=9;case 9:return f=i.message||i.Message||o,i.message=f,delete i.Message,[2,Promise.reject(Object.assign(Error(f),i))]}})})},rF=function(e,t){return rd(void 0,void 0,void 0,function(){var n,r,i;return rp(this,function(o){switch(o.label){case 0:if(e.statusCode>=300)return[2,rR(e,t)];return[4,ig(e.body,t)];case 1:return n=o.sent(),r={},r=ia(n,t),[2,Promise.resolve(i=rf({$metadata:ip(e)},r))]}})})},rR=function(e,t){return rd(void 0,void 0,void 0,function(){var n,r,i,o,a,s,u,c,l,f,d,p,h,m;return rp(this,function(v){switch(v.label){case 0:return r=[rf({},e)],m={},[4,ig(e.body,t)];case 1:switch(n=rf.apply(void 0,r.concat([(m.body=v.sent(),m)])),o="UnknownError",a=o=iy(e,n.body)){case"DataAlreadyAcceptedException":case"com.amazonaws.cloudwatchlogs#DataAlreadyAcceptedException":return[3,2];case"InvalidParameterException":case"com.amazonaws.cloudwatchlogs#InvalidParameterException":return[3,4];case"InvalidSequenceTokenException":case"com.amazonaws.cloudwatchlogs#InvalidSequenceTokenException":return[3,6];case"ResourceNotFoundException":case"com.amazonaws.cloudwatchlogs#ResourceNotFoundException":return[3,8];case"ServiceUnavailableException":case"com.amazonaws.cloudwatchlogs#ServiceUnavailableException":return[3,10];case"UnrecognizedClientException":case"com.amazonaws.cloudwatchlogs#UnrecognizedClientException":return[3,12]}return[3,14];case 2:return s=[{}],[4,rL(n,t)];case 3:return i=rf.apply(void 0,[rf.apply(void 0,s.concat([v.sent()])),{name:o,$metadata:ip(e)}]),[3,15];case 4:return u=[{}],[4,rj(n,t)];case 5:return i=rf.apply(void 0,[rf.apply(void 0,u.concat([v.sent()])),{name:o,$metadata:ip(e)}]),[3,15];case 6:return c=[{}],[4,rB(n,t)];case 7:return i=rf.apply(void 0,[rf.apply(void 0,c.concat([v.sent()])),{name:o,$metadata:ip(e)}]),[3,15];case 8:return l=[{}],[4,rz(n,t)];case 9:return i=rf.apply(void 0,[rf.apply(void 0,l.concat([v.sent()])),{name:o,$metadata:ip(e)}]),[3,15];case 10:return f=[{}],[4,rH(n,t)];case 11:return i=rf.apply(void 0,[rf.apply(void 0,f.concat([v.sent()])),{name:o,$metadata:ip(e)}]),[3,15];case 12:return d=[{}],[4,rW(n,t)];case 13:return i=rf.apply(void 0,[rf.apply(void 0,d.concat([v.sent()])),{name:o,$metadata:ip(e)}]),[3,15];case 14:o=(p=n.body).code||p.Code||o,i=rf(rf({},p),{name:""+o,message:p.message||p.Message||o,$fault:"client",$metadata:ip(e)}),v.label=15;case 15:return h=i.message||i.Message||o,i.message=h,delete i.Message,[2,Promise.reject(Object.assign(Error(h),i))]}})})},rL=function(e,t){return rd(void 0,void 0,void 0,function(){var n,r,i;return rp(this,function(o){return r=r1(n=e.body,t),[2,i=rf({name:"DataAlreadyAcceptedException",$fault:"client",$metadata:ip(e)},r)]})})},rj=function(e,t){return rd(void 0,void 0,void 0,function(){var n,r,i;return rp(this,function(o){return r=r3(n=e.body,t),[2,i=rf({name:"InvalidParameterException",$fault:"client",$metadata:ip(e)},r)]})})},rB=function(e,t){return rd(void 0,void 0,void 0,function(){var n,r,i;return rp(this,function(o){return r=r8(n=e.body,t),[2,i=rf({name:"InvalidSequenceTokenException",$fault:"client",$metadata:ip(e)},r)]})})},rU=function(e,t){return rd(void 0,void 0,void 0,function(){var n,r,i;return rp(this,function(o){return r=r5(n=e.body,t),[2,i=rf({name:"LimitExceededException",$fault:"client",$metadata:ip(e)},r)]})})},rZ=function(e,t){return rd(void 0,void 0,void 0,function(){var n,r,i;return rp(this,function(o){return r=ir(n=e.body,t),[2,i=rf({name:"OperationAbortedException",$fault:"client",$metadata:ip(e)},r)]})})},rV=function(e,t){return rd(void 0,void 0,void 0,function(){var n,r,i;return rp(this,function(o){return r=iu(n=e.body,t),[2,i=rf({name:"ResourceAlreadyExistsException",$fault:"client",$metadata:ip(e)},r)]})})},rz=function(e,t){return rd(void 0,void 0,void 0,function(){var n,r,i;return rp(this,function(o){return r=ic(n=e.body,t),[2,i=rf({name:"ResourceNotFoundException",$fault:"client",$metadata:ip(e)},r)]})})},rH=function(e,t){return rd(void 0,void 0,void 0,function(){var n,r,i;return rp(this,function(o){return r=il(n=e.body,t),[2,i=rf({name:"ServiceUnavailableException",$fault:"server",$metadata:ip(e)},r)]})})},rW=function(e,t){return rd(void 0,void 0,void 0,function(){var n,r,i;return rp(this,function(o){return r=id(n=e.body,t),[2,i=rf({name:"UnrecognizedClientException",$fault:"client",$metadata:ip(e)},r)]})})},r$=function(e,t){return rf(rf(rf({},void 0!==e.kmsKeyId&&null!==e.kmsKeyId&&{kmsKeyId:e.kmsKeyId}),void 0!==e.logGroupName&&null!==e.logGroupName&&{logGroupName:e.logGroupName}),void 0!==e.tags&&null!==e.tags&&{tags:r0(e.tags,t)})},rG=function(e,t){return rf(rf({},void 0!==e.logGroupName&&null!==e.logGroupName&&{logGroupName:e.logGroupName}),void 0!==e.logStreamName&&null!==e.logStreamName&&{logStreamName:e.logStreamName})},rq=function(e,t){return rf(rf(rf({},void 0!==e.limit&&null!==e.limit&&{limit:e.limit}),void 0!==e.logGroupNamePrefix&&null!==e.logGroupNamePrefix&&{logGroupNamePrefix:e.logGroupNamePrefix}),void 0!==e.nextToken&&null!==e.nextToken&&{nextToken:e.nextToken})},rK=function(e,t){return rf(rf(rf(rf(rf(rf({},void 0!==e.descending&&null!==e.descending&&{descending:e.descending}),void 0!==e.limit&&null!==e.limit&&{limit:e.limit}),void 0!==e.logGroupName&&null!==e.logGroupName&&{logGroupName:e.logGroupName}),void 0!==e.logStreamNamePrefix&&null!==e.logStreamNamePrefix&&{logStreamNamePrefix:e.logStreamNamePrefix}),void 0!==e.nextToken&&null!==e.nextToken&&{nextToken:e.nextToken}),void 0!==e.orderBy&&null!==e.orderBy&&{orderBy:e.orderBy})},rY=function(e,t){return rf(rf(rf(rf(rf(rf(rf({},void 0!==e.endTime&&null!==e.endTime&&{endTime:e.endTime}),void 0!==e.limit&&null!==e.limit&&{limit:e.limit}),void 0!==e.logGroupName&&null!==e.logGroupName&&{logGroupName:e.logGroupName}),void 0!==e.logStreamName&&null!==e.logStreamName&&{logStreamName:e.logStreamName}),void 0!==e.nextToken&&null!==e.nextToken&&{nextToken:e.nextToken}),void 0!==e.startFromHead&&null!==e.startFromHead&&{startFromHead:e.startFromHead}),void 0!==e.startTime&&null!==e.startTime&&{startTime:e.startTime})},rX=function(e,t){return rf(rf({},void 0!==e.message&&null!==e.message&&{message:e.message}),void 0!==e.timestamp&&null!==e.timestamp&&{timestamp:e.timestamp})},rJ=function(e,t){return e.filter(function(e){return null!=e}).map(function(e){return null===e?null:rX(e,t)})},rQ=function(e,t){return rf(rf(rf(rf({},void 0!==e.logEvents&&null!==e.logEvents&&{logEvents:rJ(e.logEvents,t)}),void 0!==e.logGroupName&&null!==e.logGroupName&&{logGroupName:e.logGroupName}),void 0!==e.logStreamName&&null!==e.logStreamName&&{logStreamName:e.logStreamName}),void 0!==e.sequenceToken&&null!==e.sequenceToken&&{sequenceToken:e.sequenceToken})},r0=function(e,t){return Object.entries(e).reduce(function(e,t){var n,r=rh(t,2),i=r[0],o=r[1];return null===o?e:rf(rf({},e),((n={})[i]=o,n))},{})},r1=function(e,t){return{expectedSequenceToken:void 0!==e.expectedSequenceToken&&null!==e.expectedSequenceToken?e.expectedSequenceToken:void 0,message:void 0!==e.message&&null!==e.message?e.message:void 0}},r2=function(e,t){return{logGroups:void 0!==e.logGroups&&null!==e.logGroups?r7(e.logGroups,t):void 0,nextToken:void 0!==e.nextToken&&null!==e.nextToken?e.nextToken:void 0}},r4=function(e,t){return{logStreams:void 0!==e.logStreams&&null!==e.logStreams?it(e.logStreams,t):void 0,nextToken:void 0!==e.nextToken&&null!==e.nextToken?e.nextToken:void 0}},r6=function(e,t){return{events:void 0!==e.events&&null!==e.events?io(e.events,t):void 0,nextBackwardToken:void 0!==e.nextBackwardToken&&null!==e.nextBackwardToken?e.nextBackwardToken:void 0,nextForwardToken:void 0!==e.nextForwardToken&&null!==e.nextForwardToken?e.nextForwardToken:void 0}},r3=function(e,t){return{message:void 0!==e.message&&null!==e.message?e.message:void 0}},r8=function(e,t){return{expectedSequenceToken:void 0!==e.expectedSequenceToken&&null!==e.expectedSequenceToken?e.expectedSequenceToken:void 0,message:void 0!==e.message&&null!==e.message?e.message:void 0}},r5=function(e,t){return{message:void 0!==e.message&&null!==e.message?e.message:void 0}},r9=function(e,t){return{arn:void 0!==e.arn&&null!==e.arn?e.arn:void 0,creationTime:void 0!==e.creationTime&&null!==e.creationTime?e.creationTime:void 0,kmsKeyId:void 0!==e.kmsKeyId&&null!==e.kmsKeyId?e.kmsKeyId:void 0,logGroupName:void 0!==e.logGroupName&&null!==e.logGroupName?e.logGroupName:void 0,metricFilterCount:void 0!==e.metricFilterCount&&null!==e.metricFilterCount?e.metricFilterCount:void 0,retentionInDays:void 0!==e.retentionInDays&&null!==e.retentionInDays?e.retentionInDays:void 0,storedBytes:void 0!==e.storedBytes&&null!==e.storedBytes?e.storedBytes:void 0}},r7=function(e,t){return(e||[]).filter(function(e){return null!=e}).map(function(e){return null===e?null:r9(e,t)})},ie=function(e,t){return{arn:void 0!==e.arn&&null!==e.arn?e.arn:void 0,creationTime:void 0!==e.creationTime&&null!==e.creationTime?e.creationTime:void 0,firstEventTimestamp:void 0!==e.firstEventTimestamp&&null!==e.firstEventTimestamp?e.firstEventTimestamp:void 0,lastEventTimestamp:void 0!==e.lastEventTimestamp&&null!==e.lastEventTimestamp?e.lastEventTimestamp:void 0,lastIngestionTime:void 0!==e.lastIngestionTime&&null!==e.lastIngestionTime?e.lastIngestionTime:void 0,logStreamName:void 0!==e.logStreamName&&null!==e.logStreamName?e.logStreamName:void 0,storedBytes:void 0!==e.storedBytes&&null!==e.storedBytes?e.storedBytes:void 0,uploadSequenceToken:void 0!==e.uploadSequenceToken&&null!==e.uploadSequenceToken?e.uploadSequenceToken:void 0}},it=function(e,t){return(e||[]).filter(function(e){return null!=e}).map(function(e){return null===e?null:ie(e,t)})},ir=function(e,t){return{message:void 0!==e.message&&null!==e.message?e.message:void 0}},ii=function(e,t){return{ingestionTime:void 0!==e.ingestionTime&&null!==e.ingestionTime?e.ingestionTime:void 0,message:void 0!==e.message&&null!==e.message?e.message:void 0,timestamp:void 0!==e.timestamp&&null!==e.timestamp?e.timestamp:void 0}},io=function(e,t){return(e||[]).filter(function(e){return null!=e}).map(function(e){return null===e?null:ii(e,t)})},ia=function(e,t){return{nextSequenceToken:void 0!==e.nextSequenceToken&&null!==e.nextSequenceToken?e.nextSequenceToken:void 0,rejectedLogEventsInfo:void 0!==e.rejectedLogEventsInfo&&null!==e.rejectedLogEventsInfo?is(e.rejectedLogEventsInfo,t):void 0}},is=function(e,t){return{expiredLogEventEndIndex:void 0!==e.expiredLogEventEndIndex&&null!==e.expiredLogEventEndIndex?e.expiredLogEventEndIndex:void 0,tooNewLogEventStartIndex:void 0!==e.tooNewLogEventStartIndex&&null!==e.tooNewLogEventStartIndex?e.tooNewLogEventStartIndex:void 0,tooOldLogEventEndIndex:void 0!==e.tooOldLogEventEndIndex&&null!==e.tooOldLogEventEndIndex?e.tooOldLogEventEndIndex:void 0}},iu=function(e,t){return{message:void 0!==e.message&&null!==e.message?e.message:void 0}},ic=function(e,t){return{message:void 0!==e.message&&null!==e.message?e.message:void 0}},il=function(e,t){return{message:void 0!==e.message&&null!==e.message?e.message:void 0}},id=function(e,t){return{message:void 0!==e.message&&null!==e.message?e.message:void 0}},ip=function(e){var t;return{httpStatusCode:e.statusCode,requestId:null!==(t=e.headers["x-amzn-requestid"])&&void 0!==t?t:e.headers["x-amzn-request-id"],extendedRequestId:e.headers["x-amz-id-2"],cfId:e.headers["x-amz-cf-id"]}},ih=function(e,t){return(void 0===e&&(e=new Uint8Array),e instanceof Uint8Array)?Promise.resolve(e):t.streamCollector(e)||Promise.resolve(new Uint8Array)},im=function(e,t){return ih(e,t).then(function(e){return t.utf8Encoder(e)})},iv=function(e,t,n,r,i){return rd(void 0,void 0,void 0,function(){var o,a,s,u,c,l;return rp(this,function(f){switch(f.label){case 0:return[4,e.endpoint()];case 1:return a=(o=f.sent()).hostname,l={protocol:u=void 0===(s=o.protocol)?"https":s,hostname:a,port:c=o.port,method:"POST",path:n,headers:t},void 0!==r&&(l.hostname=r),void 0!==i&&(l.body=i),[2,new rg(l)]}})})},ig=function(e,t){return im(e,t).then(function(e){return e.length?JSON.parse(e):{}})},iy=function(e,t){var n,r,i=function(e){var t=e;return t.indexOf(":")>=0&&(t=t.split(":")[0]),t.indexOf("#")>=0&&(t=t.split("#")[1]),t},o=(n=e.headers,r="x-amzn-errortype",Object.keys(n).find(function(e){return e.toLowerCase()===r.toLowerCase()}));return void 0!==o?i(e.headers[o]):void 0!==t.code?i(t.code):void 0!==t.__type?i(t.__type):""},ib=function(e,t){return function(n,r){return function(r){return(0,rv.__awaiter)(void 0,void 0,void 0,function(){var i,o;return(0,rv.__generator)(this,function(a){switch(a.label){case 0:return[4,n(r)];case 1:return[4,t(i=a.sent().response,e)];case 2:return[2,{response:i,output:o=a.sent()}]}})})}}},iE=function(e,t){return function(n,r){return function(r){return(0,rv.__awaiter)(void 0,void 0,void 0,function(){var i;return(0,rv.__generator)(this,function(o){switch(o.label){case 0:return[4,t(r.input,e)];case 1:return i=o.sent(),[2,n((0,rv.__assign)((0,rv.__assign)({},r),{request:i}))]}})})}}},iw={name:"deserializerMiddleware",step:"deserialize",tags:["DESERIALIZER"],override:!0},ix={name:"serializerMiddleware",step:"serialize",tags:["SERIALIZER"],override:!0};function i_(e,t,n){return{applyToStack:function(r){r.add(ib(e,n),iw),r.add(iE(e,t),ix)}}}var iS=function(){var e=[],t=[],n=new Set,r=function(e){return e.sort(function(e,t){return iC[t.step]-iC[e.step]||iA[t.priority||"normal"]-iA[e.priority||"normal"]})},i=function(r){var i=!1,o=function(e){return!e.name||e.name!==r||(i=!0,n.delete(r),!1)};return e=e.filter(o),t=t.filter(o),i},o=function(r){var i=!1,o=function(e){return e.middleware!==r||(i=!0,e.name&&n.delete(e.name),!1)};return e=e.filter(o),t=t.filter(o),i},a=function(n){return e.forEach(function(e){n.add(e.middleware,(0,rv.__assign)({},e))}),t.forEach(function(e){n.addRelativeTo(e.middleware,(0,rv.__assign)({},e))}),n},s=function(e){var t=[];return e.before.forEach(function(e){0===e.before.length&&0===e.after.length?t.push(e):t.push.apply(t,(0,rv.__spread)(s(e)))}),t.push(e),e.after.reverse().forEach(function(e){0===e.before.length&&0===e.after.length?t.push(e):t.push.apply(t,(0,rv.__spread)(s(e)))}),t},u=function(){var n=[],i=[],o={};return e.forEach(function(e){var t=(0,rv.__assign)((0,rv.__assign)({},e),{before:[],after:[]});t.name&&(o[t.name]=t),n.push(t)}),t.forEach(function(e){var t=(0,rv.__assign)((0,rv.__assign)({},e),{before:[],after:[]});t.name&&(o[t.name]=t),i.push(t)}),i.forEach(function(e){if(e.toMiddleware){var t=o[e.toMiddleware];if(void 0===t)throw Error(e.toMiddleware+" is not found when adding "+(e.name||"anonymous")+" middleware "+e.relation+" "+e.toMiddleware);"after"===e.relation&&t.after.push(e),"before"===e.relation&&t.before.push(e)}}),r(n).map(s).reduce(function(e,t){return e.push.apply(e,(0,rv.__spread)(t)),e},[]).map(function(e){return e.middleware})},c={add:function(t,r){void 0===r&&(r={});var i=r.name,o=r.override,a=(0,rv.__assign)({step:"initialize",priority:"normal",middleware:t},r);if(i){if(n.has(i)){if(!o)throw Error("Duplicate middleware name '"+i+"'");var s=e.findIndex(function(e){return e.name===i}),u=e[s];if(u.step!==a.step||u.priority!==a.priority)throw Error('"'+i+'" middleware with '+u.priority+" priority in "+u.step+" step cannot be "+("overridden by same-name middleware with "+a.priority+" priority in ")+a.step+" step.");e.splice(s,1)}n.add(i)}e.push(a)},addRelativeTo:function(e,r){var i=r.name,o=r.override,a=(0,rv.__assign)({middleware:e},r);if(i){if(n.has(i)){if(!o)throw Error("Duplicate middleware name '"+i+"'");var s=t.findIndex(function(e){return e.name===i}),u=t[s];if(u.toMiddleware!==a.toMiddleware||u.relation!==a.relation)throw Error('"'+i+'" middleware '+u.relation+' "'+u.toMiddleware+'" middleware cannot be overridden '+("by same-name middleware "+a.relation+' "')+a.toMiddleware+'" middleware.');t.splice(s,1)}n.add(i)}t.push(a)},clone:function(){return a(iS())},use:function(e){e.applyToStack(c)},remove:function(e){return"string"==typeof e?i(e):o(e)},removeByTag:function(r){var i=!1,o=function(e){var t=e.tags,o=e.name;return!(t&&t.includes(r))||(o&&n.delete(o),i=!0,!1)};return e=e.filter(o),t=t.filter(o),i},concat:function(e){var t=a(iS());return t.use(e),t},applyToStack:a,resolve:function(e,t){var n,r;try{for(var i=(0,rv.__values)(u().reverse()),o=i.next();!o.done;o=i.next())e=(0,o.value)(e,t)}catch(a){n={error:a}}finally{try{o&&!o.done&&(r=i.return)&&r.call(i)}finally{if(n)throw n.error}}return e}};return c},iC={initialize:5,serialize:4,build:3,finalizeRequest:2,deserialize:1},iA={high:3,normal:2,low:1},iD=function(){function e(e){this.middlewareStack=iS(),this.config=e}return e.prototype.send=function(e,t,n){var r="function"!=typeof t?t:void 0,i="function"==typeof t?t:n,o=e.resolveMiddleware(this.middlewareStack,this.config,r);if(!i)return o(e).then(function(e){return e.output});o(e).then(function(e){return i(null,e.output)},function(e){return i(e)}).catch(function(){})},e.prototype.destroy=function(){this.config.requestHandler.destroy&&this.config.requestHandler.destroy()},e}(),iO=function(){function e(){this.middlewareStack=iS()}return e}(),ik=function(){var e=Object.getPrototypeOf(this).constructor,t=Function.bind.apply(String,(0,rv.__spread)([null],arguments)),n=new t;return Object.setPrototypeOf(n,e.prototype),n};ik.prototype=Object.create(String.prototype,{constructor:{value:ik,enumerable:!1,writable:!0,configurable:!0}}),Object.setPrototypeOf(ik,String),function(e){function t(){return null!==e&&e.apply(this,arguments)||this}(0,rv.__extends)(t,e),t.prototype.deserializeJSON=function(){return JSON.parse(e.prototype.toString.call(this))},t.prototype.toJSON=function(){return e.prototype.toString.call(this)},t.fromObject=function(e){return e instanceof t?e:new t(e instanceof String||"string"==typeof e?e:JSON.stringify(e))}}(ik);var iT=function(e){function t(t){var n=e.call(this)||this;return n.input=t,n}return rl(t,e),t.prototype.resolveMiddleware=function(e,t,n){this.middlewareStack.use(i_(t,this.serialize,this.deserialize));var r,i=e.concat(this.middlewareStack),o={logger:t.logger,clientName:"CloudWatchLogsClient",commandName:"CreateLogGroupCommand",inputFilterSensitiveLog:m.filterSensitiveLog,outputFilterSensitiveLog:function(e){return e}},a=t.requestHandler;return i.resolve(function(e){return a.handle(e.request,n||{})},o)},t.prototype.serialize=function(e,t){return rb(e,t)},t.prototype.deserialize=function(e,t){return rC(e,t)},t}(iO),iN=function(e){function t(t){var n=e.call(this)||this;return n.input=t,n}return rl(t,e),t.prototype.resolveMiddleware=function(e,t,n){this.middlewareStack.use(i_(t,this.serialize,this.deserialize));var r,i=e.concat(this.middlewareStack),o={logger:t.logger,clientName:"CloudWatchLogsClient",commandName:"DescribeLogGroupsCommand",inputFilterSensitiveLog:R.filterSensitiveLog,outputFilterSensitiveLog:j.filterSensitiveLog},a=t.requestHandler;return i.resolve(function(e){return a.handle(e.request,n||{})},o)},t.prototype.serialize=function(e,t){return rw(e,t)},t.prototype.deserialize=function(e,t){return rk(e,t)},t}(iO),iP=function(e){function t(t){var n=e.call(this)||this;return n.input=t,n}return rl(t,e),t.prototype.resolveMiddleware=function(e,t,n){this.middlewareStack.use(i_(t,this.serialize,this.deserialize));var r,i=e.concat(this.middlewareStack),o={logger:t.logger,clientName:"CloudWatchLogsClient",commandName:"CreateLogStreamCommand",inputFilterSensitiveLog:v.filterSensitiveLog,outputFilterSensitiveLog:function(e){return e}},a=t.requestHandler;return i.resolve(function(e){return a.handle(e.request,n||{})},o)},t.prototype.serialize=function(e,t){return rE(e,t)},t.prototype.deserialize=function(e,t){return rD(e,t)},t}(iO),iI=function(e){function t(t){var n=e.call(this)||this;return n.input=t,n}return rl(t,e),t.prototype.resolveMiddleware=function(e,t,n){this.middlewareStack.use(i_(t,this.serialize,this.deserialize));var r,i=e.concat(this.middlewareStack),o={logger:t.logger,clientName:"CloudWatchLogsClient",commandName:"DescribeLogStreamsCommand",inputFilterSensitiveLog:U.filterSensitiveLog,outputFilterSensitiveLog:V.filterSensitiveLog},a=t.requestHandler;return i.resolve(function(e){return a.handle(e.request,n||{})},o)},t.prototype.serialize=function(e,t){return rx(e,t)},t.prototype.deserialize=function(e,t){return rN(e,t)},t}(iO),iM=function(e){function t(t){var n=e.call(this)||this;return n.input=t,n}return rl(t,e),t.prototype.resolveMiddleware=function(e,t,n){this.middlewareStack.use(i_(t,this.serialize,this.deserialize));var r,i=e.concat(this.middlewareStack),o={logger:t.logger,clientName:"CloudWatchLogsClient",commandName:"GetLogEventsCommand",inputFilterSensitiveLog:ed.filterSensitiveLog,outputFilterSensitiveLog:eh.filterSensitiveLog},a=t.requestHandler;return i.resolve(function(e){return a.handle(e.request,n||{})},o)},t.prototype.serialize=function(e,t){return r_(e,t)},t.prototype.deserialize=function(e,t){return rI(e,t)},t}(iO),iF=function(e){function t(t){var n=e.call(this)||this;return n.input=t,n}return rl(t,e),t.prototype.resolveMiddleware=function(e,t,n){this.middlewareStack.use(i_(t,this.serialize,this.deserialize));var r,i=e.concat(this.middlewareStack),o={logger:t.logger,clientName:"CloudWatchLogsClient",commandName:"PutLogEventsCommand",inputFilterSensitiveLog:eN.filterSensitiveLog,outputFilterSensitiveLog:eI.filterSensitiveLog},a=t.requestHandler;return i.resolve(function(e){return a.handle(e.request,n||{})},o)},t.prototype.serialize=function(e,t){return rS(e,t)},t.prototype.deserialize=function(e,t){return rF(e,t)},t}(iO),iR={i8:"3.6.1"},iL=n(77643),ij=function(e){return encodeURIComponent(e).replace(/[!'()*]/g,iB)},iB=function(e){return"%"+e.charCodeAt(0).toString(16).toUpperCase()};function iU(e){var t,n,r=[];try{for(var i=(0,rv.__values)(Object.keys(e).sort()),o=i.next();!o.done;o=i.next()){var a=o.value,s=e[a];if(a=ij(a),Array.isArray(s))for(var u=0,c=s.length;u>=iY;var c=i/4*3;o>>=a%iX;for(var l=Math.floor(a/iX),f=0;f>d)}}return new Uint8Array(n)}function i0(e){for(var t="",n=0;n>c]}t+="==".slice(0,4-s)}return t}var i1=function(e){return"function"==typeof Blob&&e instanceof Blob?i2(e):i4(e)};function i2(e){return(0,rv.__awaiter)(this,void 0,void 0,function(){var t,n;return(0,rv.__generator)(this,function(r){switch(r.label){case 0:return[4,i6(e)];case 1:return n=iQ(t=r.sent()),[2,new Uint8Array(n)]}})})}function i4(e){return(0,rv.__awaiter)(this,void 0,void 0,function(){var t,n,r,i,o,a,s;return(0,rv.__generator)(this,function(u){switch(u.label){case 0:t=new Uint8Array(0),n=e.getReader(),r=!1,u.label=1;case 1:if(r)return[3,3];return[4,n.read()];case 2:return o=(i=u.sent()).done,(a=i.value)&&(s=t,(t=new Uint8Array(s.length+a.length)).set(s),t.set(a,s.length)),r=o,[3,1];case 3:return[2,t]}})})}function i6(e){return new Promise(function(t,n){var r=new FileReader;r.onloadend=function(){if(2!==r.readyState)return n(Error("Reader aborted too early"));var e,i=null!==(e=r.result)&&void 0!==e?e:"",o=i.indexOf(","),a=o>-1?o+1:i.length;t(i.substring(a))},r.onabort=function(){return n(Error("Read aborted"))},r.onerror=function(){return n(r.error)},r.readAsDataURL(e)})}var i3=function(e){return function(){return Promise.reject(e)}},i8=function(e){return function(t,n){return function(r){return(0,rv.__awaiter)(void 0,void 0,void 0,function(){var i;return(0,rv.__generator)(this,function(o){return(null===(i=null==e?void 0:e.retryStrategy)||void 0===i?void 0:i.mode)&&(n.userAgent=(0,rv.__spread)(n.userAgent||[],[["cfg/retry-mode",e.retryStrategy.mode]])),[2,e.retryStrategy.retry(t,r)]})})}}},i5={name:"retryMiddleware",tags:["RETRY"],step:"finalizeRequest",priority:"high",override:!0},i9=function(e){return{applyToStack:function(t){t.add(i8(e),i5)}}},i7=["AuthFailure","InvalidSignatureException","RequestExpired","RequestInTheFuture","RequestTimeTooSkewed","SignatureDoesNotMatch",],oe=["BandwidthLimitExceeded","EC2ThrottledException","LimitExceededException","PriorRequestNotComplete","ProvisionedThroughputExceededException","RequestLimitExceeded","RequestThrottled","RequestThrottledException","SlowDown","ThrottledException","Throttling","ThrottlingException","TooManyRequestsException","TransactionInProgressException",],ot=["AbortError","TimeoutError","RequestTimeout","RequestTimeoutException"],on=[500,502,503,504],or=function(e){return void 0!==e.$retryable},oi=function(e){return i7.includes(e.name)},oo=function(e){var t,n;return(null===(t=e.$metadata)||void 0===t?void 0:t.httpStatusCode)===429||oe.includes(e.name)||(null===(n=e.$retryable)||void 0===n?void 0:n.throttling)==!0},oa=function(e){var t;return ot.includes(e.name)||on.includes((null===(t=e.$metadata)||void 0===t?void 0:t.httpStatusCode)||0)},os=n(55877),ou=100,oc=2e4,ol=500,of=500,od=5,op=10,oh=1,om="amz-sdk-invocation-id",ov="amz-sdk-request",og=function(e){var t=e,n=e,r=function(e){return"TimeoutError"===e.name?op:od},i=function(e){return r(e)<=n},o=function(e){if(!i(e))throw Error("No retry token available");var t=r(e);return n-=t,t};return Object.freeze({hasRetryTokens:i,retrieveRetryTokens:o,releaseRetryTokens:function(e){n+=null!=e?e:oh,n=Math.min(n,t)}})},oy=function(e,t){return Math.floor(Math.min(oc,Math.random()*Math.pow(2,t)*e))},ob=function(e){return!!e&&(or(e)||oi(e)||oo(e)||oa(e))},oE=3,ow="standard",ox=function(){function e(e,t){var n,r,i;this.maxAttemptsProvider=e,this.mode=ow,this.retryDecider=null!==(n=null==t?void 0:t.retryDecider)&&void 0!==n?n:ob,this.delayDecider=null!==(r=null==t?void 0:t.delayDecider)&&void 0!==r?r:oy,this.retryQuota=null!==(i=null==t?void 0:t.retryQuota)&&void 0!==i?i:og(of)}return e.prototype.shouldRetry=function(e,t,n){return t=0;n--){var r=e.charCodeAt(n);r>127&&r<=2047?t++:r>2047&&r<=65535&&(t+=2)}return t}return"number"==typeof e.byteLength?e.byteLength:"number"==typeof e.size?e.size:void 0}var oA=n(51206),oD=n.n(oA),oO=function(e){var t=e.serviceId,n=e.clientVersion;return function(){return(0,rv.__awaiter)(void 0,void 0,void 0,function(){var e,r,i,o,a,s,u,c,l;return(0,rv.__generator)(this,function(f){return e=(null===(i=null==window?void 0:window.navigator)||void 0===i?void 0:i.userAgent)?oD().parse(window.navigator.userAgent):void 0,r=[["aws-sdk-js",n],["os/"+((null===(o=null==e?void 0:e.os)||void 0===o?void 0:o.name)||"other"),null===(a=null==e?void 0:e.os)||void 0===a?void 0:a.version],["lang/js"],["md/browser",(null!==(u=null===(s=null==e?void 0:e.browser)||void 0===s?void 0:s.name)&&void 0!==u?u:"unknown")+"_"+(null!==(l=null===(c=null==e?void 0:e.browser)||void 0===c?void 0:c.version)&&void 0!==l?l:"unknown")],],t&&r.push(["api/"+t,n]),[2,r]})})}},ok=n(98143),oT="logs.{region}.amazonaws.com",oN="logs.{region}.amazonaws.com.cn",oP="logs.{region}.c2s.ic.gov",oI="logs.{region}.sc2s.sgov.gov",oM="logs.{region}.amazonaws.com",oF=new Set(["af-south-1","ap-east-1","ap-northeast-1","ap-northeast-2","ap-south-1","ap-southeast-1","ap-southeast-2","ca-central-1","eu-central-1","eu-north-1","eu-south-1","eu-west-1","eu-west-2","eu-west-3","me-south-1","sa-east-1","us-east-1","us-east-2","us-west-1","us-west-2",]),oR=new Set(["cn-north-1","cn-northwest-1"]),oL=new Set(["us-iso-east-1"]),oj=new Set(["us-isob-east-1"]),oB=new Set(["us-gov-east-1","us-gov-west-1"]),oU=function(e,t){var n=void 0;switch(e){case"af-south-1":n={hostname:"logs.af-south-1.amazonaws.com",partition:"aws"};break;case"ap-east-1":n={hostname:"logs.ap-east-1.amazonaws.com",partition:"aws"};break;case"ap-northeast-1":n={hostname:"logs.ap-northeast-1.amazonaws.com",partition:"aws"};break;case"ap-northeast-2":n={hostname:"logs.ap-northeast-2.amazonaws.com",partition:"aws"};break;case"ap-south-1":n={hostname:"logs.ap-south-1.amazonaws.com",partition:"aws"};break;case"ap-southeast-1":n={hostname:"logs.ap-southeast-1.amazonaws.com",partition:"aws"};break;case"ap-southeast-2":n={hostname:"logs.ap-southeast-2.amazonaws.com",partition:"aws"};break;case"ca-central-1":n={hostname:"logs.ca-central-1.amazonaws.com",partition:"aws"};break;case"cn-north-1":n={hostname:"logs.cn-north-1.amazonaws.com.cn",partition:"aws-cn"};break;case"cn-northwest-1":n={hostname:"logs.cn-northwest-1.amazonaws.com.cn",partition:"aws-cn"};break;case"eu-central-1":n={hostname:"logs.eu-central-1.amazonaws.com",partition:"aws"};break;case"eu-north-1":n={hostname:"logs.eu-north-1.amazonaws.com",partition:"aws"};break;case"eu-south-1":n={hostname:"logs.eu-south-1.amazonaws.com",partition:"aws"};break;case"eu-west-1":n={hostname:"logs.eu-west-1.amazonaws.com",partition:"aws"};break;case"eu-west-2":n={hostname:"logs.eu-west-2.amazonaws.com",partition:"aws"};break;case"eu-west-3":n={hostname:"logs.eu-west-3.amazonaws.com",partition:"aws"};break;case"fips-us-east-1":n={hostname:"logs-fips.us-east-1.amazonaws.com",partition:"aws",signingRegion:"us-east-1"};break;case"fips-us-east-2":n={hostname:"logs-fips.us-east-2.amazonaws.com",partition:"aws",signingRegion:"us-east-2"};break;case"fips-us-west-1":n={hostname:"logs-fips.us-west-1.amazonaws.com",partition:"aws",signingRegion:"us-west-1"};break;case"fips-us-west-2":n={hostname:"logs-fips.us-west-2.amazonaws.com",partition:"aws",signingRegion:"us-west-2"};break;case"me-south-1":n={hostname:"logs.me-south-1.amazonaws.com",partition:"aws"};break;case"sa-east-1":n={hostname:"logs.sa-east-1.amazonaws.com",partition:"aws"};break;case"us-east-1":n={hostname:"logs.us-east-1.amazonaws.com",partition:"aws"};break;case"us-east-2":n={hostname:"logs.us-east-2.amazonaws.com",partition:"aws"};break;case"us-gov-east-1":n={hostname:"logs.us-gov-east-1.amazonaws.com",partition:"aws-us-gov",signingRegion:"us-gov-east-1"};break;case"us-gov-west-1":n={hostname:"logs.us-gov-west-1.amazonaws.com",partition:"aws-us-gov",signingRegion:"us-gov-west-1"};break;case"us-iso-east-1":n={hostname:"logs.us-iso-east-1.c2s.ic.gov",partition:"aws-iso"};break;case"us-isob-east-1":n={hostname:"logs.us-isob-east-1.sc2s.sgov.gov",partition:"aws-iso-b"};break;case"us-west-1":n={hostname:"logs.us-west-1.amazonaws.com",partition:"aws"};break;case"us-west-2":n={hostname:"logs.us-west-2.amazonaws.com",partition:"aws"};break;default:oF.has(e)&&(n={hostname:oT.replace("{region}",e),partition:"aws"}),oR.has(e)&&(n={hostname:oN.replace("{region}",e),partition:"aws-cn"}),oL.has(e)&&(n={hostname:oP.replace("{region}",e),partition:"aws-iso"}),oj.has(e)&&(n={hostname:oI.replace("{region}",e),partition:"aws-iso-b"}),oB.has(e)&&(n={hostname:oM.replace("{region}",e),partition:"aws-us-gov"}),void 0===n&&(n={hostname:oT.replace("{region}",e),partition:"aws"})}return Promise.resolve(rf({signingService:"logs"},n))};function oZ(e){var t,n,r={};if(e=e.replace(/^\?/,""))try{for(var i=(0,rv.__values)(e.split("&")),o=i.next();!o.done;o=i.next()){var a=o.value,s=(0,rv.__read)(a.split("="),2),u=s[0],c=s[1],l=void 0===c?null:c;u=decodeURIComponent(u),l&&(l=decodeURIComponent(l)),u in r?Array.isArray(r[u])?r[u].push(l):r[u]=[r[u],l]:r[u]=l}}catch(f){t={error:f}}finally{try{o&&!o.done&&(n=i.return)&&n.call(i)}finally{if(t)throw t.error}}return r}var oV=function(e){var t,n=new URL(e),r=n.hostname,i=n.pathname,o=n.port,a=n.protocol,s=n.search;return s&&(t=oZ(s)),{hostname:r,port:o?parseInt(o):void 0,protocol:a,path:i,query:t}},oz={apiVersion:"2014-03-28",disableHostPrefix:!1,logger:{},regionInfoProvider:oU,serviceId:"CloudWatch Logs",urlParser:oV},oH=rf(rf({},oz),{runtime:"browser",base64Decoder:iQ,base64Encoder:i0,bodyLengthChecker:oC,credentialDefaultProvider:function(e){return function(){return Promise.reject(Error("Credential is missing"))}},defaultUserAgentProvider:oO({serviceId:oz.serviceId,clientVersion:iR.i8}),maxAttempts:oE,region:i3("Region is missing"),requestHandler:new iV,sha256:iL.Sha256,streamCollector:i1,utf8Decoder:ok.fromUtf8,utf8Encoder:ok.toUtf8}),oW=function(e){var t;return(0,rv.__assign)((0,rv.__assign)({},e),{tls:null===(t=e.tls)||void 0===t||t,endpoint:e.endpoint?o$(e):function(){return oG(e)},isCustomEndpoint:!!e.endpoint})},o$=function(e){var t=e.endpoint,n=e.urlParser;if("string"==typeof t){var r=Promise.resolve(n(t));return function(){return r}}if("object"==typeof t){var i=Promise.resolve(t);return function(){return i}}return t},oG=function(e){return(0,rv.__awaiter)(void 0,void 0,void 0,function(){var t,n,r,i,o,a;return(0,rv.__generator)(this,function(s){switch(s.label){case 0:return n=void 0===(t=e.tls)||t,[4,e.region()];case 1:if(r=s.sent(),!(i=RegExp(/^([a-zA-Z0-9]|[a-zA-Z0-9][a-zA-Z0-9-]{0,61}[a-zA-Z0-9])$/)).test(r))throw Error("Invalid region in client config");return[4,e.regionInfoProvider(r)];case 2:if(!(o=(null!==(a=s.sent())&&void 0!==a?a:{}).hostname))throw Error("Cannot resolve hostname from client config");return[2,e.urlParser((n?"https:":"http:")+"//"+o)]}})})},oq=function(e){if(!e.region)throw Error("Region is missing");return(0,rv.__assign)((0,rv.__assign)({},e),{region:oK(e.region)})},oK=function(e){if("string"==typeof e){var t=Promise.resolve(e);return function(){return t}}return e},oY="content-length";function oX(e){var t=this;return function(n){return function(r){return(0,rv.__awaiter)(t,void 0,void 0,function(){var t,i,o,a,s;return(0,rv.__generator)(this,function(u){return t=r.request,rg.isInstance(t)&&(i=t.body,o=t.headers,i&&-1===Object.keys(o).map(function(e){return e.toLowerCase()}).indexOf(oY)&&void 0!==(a=e(i))&&(t.headers=(0,rv.__assign)((0,rv.__assign)({},t.headers),((s={})[oY]=String(a),s)))),[2,n((0,rv.__assign)((0,rv.__assign)({},r),{request:t}))]})})}}}var oJ={step:"build",tags:["SET_CONTENT_LENGTH","CONTENT_LENGTH"],name:"contentLengthMiddleware",override:!0},oQ=function(e){return{applyToStack:function(t){t.add(oX(e.bodyLengthChecker),oJ)}}};function o0(e){return e}var o1,o2,o4,o6,o3,o8,o5,o9,o7,ae,at,an,ar,ai,ao,aa,as,au,ac,al,af,ad,ap,ah,am,av,ag,ay,ab,aE,aw,ax,a_,aS,aC,aA,aD,aO,ak,aT,aN,aP,aI,aM,aF,aR,aL,aj,aB,aU,aZ,aV,az,aH,aW,a$,aG,aq,aK,aY,aX,aJ,aQ,a0,a1,a2,a4,a6,a3,a8,a5,a9,a7,se,st,sn,sr,si,so,sa,ss,su,sc,sl,sf,sd,sp,sh,sm,sv,sg,sy,sb,sE,sw,sx,s_,sS,sC,sA,sD,sO,sk,sT,sN=function(e){return function(t){return function(n){return(0,rv.__awaiter)(void 0,void 0,void 0,function(){var r,i,o;return(0,rv.__generator)(this,function(a){return rg.isInstance(n.request)&&(r=n.request,(o=void 0===(i=(e.requestHandler.metadata||{}).handlerProtocol)?"":i).indexOf("h2")>=0&&!r.headers[":authority"]?(delete r.headers.host,r.headers[":authority"]=""):r.headers.host||(r.headers.host=r.hostname)),[2,t(n)]})})}}},sP={name:"hostHeaderMiddleware",step:"build",priority:"low",tags:["HOST"],override:!0},sI=function(e){return{applyToStack:function(t){t.add(sN(e),sP)}}},sM=function(){return function(e,t){return function(n){return(0,rv.__awaiter)(void 0,void 0,void 0,function(){var r,i,o,a,s,u,c,l,f;return(0,rv.__generator)(this,function(d){switch(d.label){case 0:return r=t.clientName,i=t.commandName,o=t.inputFilterSensitiveLog,a=t.logger,s=t.outputFilterSensitiveLog,[4,e(n)];case 1:if(u=d.sent(),!a)return[2,u];return"function"==typeof a.info&&(l=(c=u.output).$metadata,f=(0,rv.__rest)(c,["$metadata"]),a.info({clientName:r,commandName:i,input:o(n.input),output:s(f),metadata:l})),[2,u]}})})}}},sF={name:"loggerMiddleware",tags:["LOGGER"],step:"initialize",override:!0},sR=function(e){return{applyToStack:function(e){e.add(sM(),sF)}}},sL="X-Amz-Algorithm",sj="X-Amz-Credential",sB="X-Amz-Date",sU="X-Amz-SignedHeaders",sZ="X-Amz-Expires",sV="X-Amz-Signature",sz="X-Amz-Security-Token",sH="authorization",sW=sB.toLowerCase(),s$=[sH,sW,"date"],sG=sV.toLowerCase(),sq="x-amz-content-sha256",sK=sz.toLowerCase(),sY={authorization:!0,"cache-control":!0,connection:!0,expect:!0,from:!0,"keep-alive":!0,"max-forwards":!0,pragma:!0,referer:!0,te:!0,trailer:!0,"transfer-encoding":!0,upgrade:!0,"user-agent":!0,"x-amzn-trace-id":!0},sX=/^proxy-/,sJ=/^sec-/,sQ="AWS4-HMAC-SHA256",s0="AWS4-HMAC-SHA256-PAYLOAD",s1="UNSIGNED-PAYLOAD",s2=50,s4="aws4_request",s6=604800,s3={},s8=[];function s5(e,t,n){return e+"/"+t+"/"+n+"/"+s4}var s9=function(e,t,n,r,i){return(0,rv.__awaiter)(void 0,void 0,void 0,function(){var o,a,s,u,c,l,f,d,p;return(0,rv.__generator)(this,function(h){switch(h.label){case 0:return[4,s7(e,t.secretAccessKey,t.accessKeyId)];case 1:if((a=n+":"+r+":"+i+":"+nW(o=h.sent())+":"+t.sessionToken)in s3)return[2,s3[a]];for(s8.push(a);s8.length>s2;)delete s3[s8.shift()];s="AWS4"+t.secretAccessKey,h.label=2;case 2:h.trys.push([2,7,8,9]),c=(u=(0,rv.__values)([n,r,i,s4])).next(),h.label=3;case 3:if(c.done)return[3,6];return[4,s7(e,s,l=c.value)];case 4:s=h.sent(),h.label=5;case 5:return c=u.next(),[3,3];case 6:return[3,9];case 7:return d={error:f=h.sent()},[3,9];case 8:try{c&&!c.done&&(p=u.return)&&p.call(u)}finally{if(d)throw d.error}return[7];case 9:return[2,s3[a]=s]}})})};function s7(e,t,n){var r=new e(t);return r.update(n),r.digest()}function ue(e,t,n){var r,i,o=e.headers,a={};try{for(var s=(0,rv.__values)(Object.keys(o).sort()),u=s.next();!u.done;u=s.next()){var c=u.value,l=c.toLowerCase();(!(l in sY||(null==t?void 0:t.has(l))||sX.test(l)||sJ.test(l))||n&&(!n||n.has(l)))&&(a[l]=o[c].trim().replace(/\s+/g," "))}}catch(f){r={error:f}}finally{try{u&&!u.done&&(i=s.return)&&i.call(s)}finally{if(r)throw r.error}}return a}function ut(e){var t,n,r=e.query,i=void 0===r?{}:r,o=[],a={},s=function(e){if(e.toLowerCase()===sG)return"continue";o.push(e);var t=i[e];"string"==typeof t?a[e]=ij(e)+"="+ij(t):Array.isArray(t)&&(a[e]=t.slice(0).sort().reduce(function(t,n){return t.concat([ij(e)+"="+ij(n)])},[]).join("&"))};try{for(var u=(0,rv.__values)(Object.keys(i).sort()),c=u.next();!c.done;c=u.next()){var l=c.value;s(l)}}catch(f){t={error:f}}finally{try{c&&!c.done&&(n=u.return)&&n.call(u)}finally{if(t)throw t.error}}return o.map(function(e){return a[e]}).filter(function(e){return e}).join("&")}var un=function(e){return"function"==typeof ArrayBuffer&&e instanceof ArrayBuffer||"[object ArrayBuffer]"===Object.prototype.toString.call(e)};function ur(e,t){var n=e.headers,r=e.body;return(0,rv.__awaiter)(this,void 0,void 0,function(){var e,i,o,a,s,u,c;return(0,rv.__generator)(this,function(l){switch(l.label){case 0:try{for(i=(e=(0,rv.__values)(Object.keys(n))).next();!i.done;i=e.next())if((o=i.value).toLowerCase()===sq)return[2,n[o]]}catch(f){u={error:f}}finally{try{i&&!i.done&&(c=e.return)&&c.call(e)}finally{if(u)throw u.error}}if(void 0!=r)return[3,1];return[2,"e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855"];case 1:if(!("string"==typeof r||ArrayBuffer.isView(r)||un(r)))return[3,3];return(a=new t).update(r),s=nW,[4,a.digest()];case 2:return[2,s.apply(void 0,[l.sent()])];case 3:return[2,s1]}})})}function ui(e,t){var n,r;e=e.toLowerCase();try{for(var i=(0,rv.__values)(Object.keys(t)),o=i.next();!o.done;o=i.next()){var a=o.value;if(e===a.toLowerCase())return!0}}catch(s){n={error:s}}finally{try{o&&!o.done&&(r=i.return)&&r.call(i)}finally{if(n)throw n.error}}return!1}function uo(e){var t=e.headers,n=e.query,r=(0,rv.__rest)(e,["headers","query"]);return(0,rv.__assign)((0,rv.__assign)({},r),{headers:(0,rv.__assign)({},t),query:n?ua(n):void 0})}function ua(e){return Object.keys(e).reduce(function(t,n){var r,i=e[n];return(0,rv.__assign)((0,rv.__assign)({},t),((r={})[n]=Array.isArray(i)?(0,rv.__spread)(i):i,r))},{})}function us(e,t){void 0===t&&(t={});var n,r,i,o="function"==typeof e.clone?e.clone():uo(e),a=o.headers,s=o.query,u=void 0===s?{}:s;try{for(var c=(0,rv.__values)(Object.keys(a)),l=c.next();!l.done;l=c.next()){var f=l.value,d=f.toLowerCase();"x-amz-"!==d.substr(0,6)||(null===(i=t.unhoistableHeaders)||void 0===i?void 0:i.has(d))||(u[f]=a[f],delete a[f])}}catch(p){n={error:p}}finally{try{l&&!l.done&&(r=c.return)&&r.call(c)}finally{if(n)throw n.error}}return(0,rv.__assign)((0,rv.__assign)({},e),{headers:a,query:u})}function uu(e){var t,n;e="function"==typeof e.clone?e.clone():uo(e);try{for(var r=(0,rv.__values)(Object.keys(e.headers)),i=r.next();!i.done;i=r.next()){var o=i.value;s$.indexOf(o.toLowerCase())>-1&&delete e.headers[o]}}catch(a){t={error:a}}finally{try{i&&!i.done&&(n=r.return)&&n.call(r)}finally{if(t)throw t.error}}return e}function uc(e){return ul(e).toISOString().replace(/\.\d{3}Z$/,"Z")}function ul(e){return"number"==typeof e?new Date(1e3*e):"string"==typeof e?Number(e)?new Date(1e3*Number(e)):new Date(e):e}var uf=function(){function e(e){var t=e.applyChecksum,n=e.credentials,r=e.region,i=e.service,o=e.sha256,a=e.uriEscapePath,s=void 0===a||a;this.service=i,this.sha256=o,this.uriEscapePath=s,this.applyChecksum="boolean"!=typeof t||t,this.regionProvider=uh(r),this.credentialProvider=um(n)}return e.prototype.presign=function(e,t){return void 0===t&&(t={}),(0,rv.__awaiter)(this,void 0,void 0,function(){var n,r,i,o,a,s,u,c,l,f,d,p,h,m,v,g,y,b,E,w,x,_,S,C;return(0,rv.__generator)(this,function(A){switch(A.label){case 0:return r=void 0===(n=t.signingDate)?new Date:n,o=void 0===(i=t.expiresIn)?3600:i,a=t.unsignableHeaders,s=t.unhoistableHeaders,u=t.signableHeaders,c=t.signingRegion,l=t.signingService,[4,this.credentialProvider()];case 1:if(f=A.sent(),!(null!=c))return[3,2];return p=c,[3,4];case 2:return[4,this.regionProvider()];case 3:p=A.sent(),A.label=4;case 4:if(d=p,m=(h=ud(r)).longDate,v=h.shortDate,o>s6)return[2,Promise.reject("Signature version 4 presigned URLs must have an expiration date less than one week in the future")];return g=s5(v,d,null!=l?l:this.service),y=us(uu(e),{unhoistableHeaders:s}),f.sessionToken&&(y.query[sz]=f.sessionToken),y.query[sL]=sQ,y.query[sj]=f.accessKeyId+"/"+g,y.query[sB]=m,y.query[sZ]=o.toString(10),b=ue(y,a,u),y.query[sU]=up(b),E=y.query,w=sV,x=this.getSignature,_=[m,g,this.getSigningKey(f,d,v,l)],S=this.createCanonicalRequest,C=[y,b],[4,ur(e,this.sha256)];case 5:return[4,x.apply(this,_.concat([S.apply(this,C.concat([A.sent()]))]))];case 6:return E[w]=A.sent(),[2,y]}})})},e.prototype.sign=function(e,t){return(0,rv.__awaiter)(this,void 0,void 0,function(){return(0,rv.__generator)(this,function(n){return"string"==typeof e?[2,this.signString(e,t)]:e.headers&&e.payload?[2,this.signEvent(e,t)]:[2,this.signRequest(e,t)]})})},e.prototype.signEvent=function(e,t){var n=e.headers,r=e.payload,i=t.signingDate,o=void 0===i?new Date:i,a=t.priorSignature,s=t.signingRegion,u=t.signingService;return(0,rv.__awaiter)(this,void 0,void 0,function(){var e,t,i,c,l,f,d,p,h,m,v;return(0,rv.__generator)(this,function(g){switch(g.label){case 0:if(!(null!=s))return[3,1];return t=s,[3,3];case 1:return[4,this.regionProvider()];case 2:t=g.sent(),g.label=3;case 3:return e=t,c=(i=ud(o)).shortDate,l=i.longDate,f=s5(c,e,null!=u?u:this.service),[4,ur({headers:{},body:r},this.sha256)];case 4:return d=g.sent(),(p=new this.sha256).update(n),m=nW,[4,p.digest()];case 5:return v=[s0,l,f,a,h=m.apply(void 0,[g.sent()]),d,].join("\n"),[2,this.signString(v,{signingDate:o,signingRegion:e,signingService:u})]}})})},e.prototype.signString=function(e,t){var n=void 0===t?{}:t,r=n.signingDate,i=void 0===r?new Date:r,o=n.signingRegion,a=n.signingService;return(0,rv.__awaiter)(this,void 0,void 0,function(){var t,n,r,s,u,c,l,f;return(0,rv.__generator)(this,function(d){switch(d.label){case 0:return[4,this.credentialProvider()];case 1:if(t=d.sent(),!(null!=o))return[3,2];return r=o,[3,4];case 2:return[4,this.regionProvider()];case 3:r=d.sent(),d.label=4;case 4:return n=r,s=ud(i).shortDate,l=(c=this.sha256).bind,[4,this.getSigningKey(t,n,s,a)];case 5:return(u=new(l.apply(c,[void 0,d.sent()]))).update(e),f=nW,[4,u.digest()];case 6:return[2,f.apply(void 0,[d.sent()])]}})})},e.prototype.signRequest=function(e,t){var n=void 0===t?{}:t,r=n.signingDate,i=void 0===r?new Date:r,o=n.signableHeaders,a=n.unsignableHeaders,s=n.signingRegion,u=n.signingService;return(0,rv.__awaiter)(this,void 0,void 0,function(){var t,n,r,c,l,f,d,p,h,m,v;return(0,rv.__generator)(this,function(g){switch(g.label){case 0:return[4,this.credentialProvider()];case 1:if(t=g.sent(),!(null!=s))return[3,2];return r=s,[3,4];case 2:return[4,this.regionProvider()];case 3:r=g.sent(),g.label=4;case 4:return n=r,c=uu(e),f=(l=ud(i)).longDate,p=s5(d=l.shortDate,n,null!=u?u:this.service),c.headers[sW]=f,t.sessionToken&&(c.headers[sK]=t.sessionToken),[4,ur(c,this.sha256)];case 5:return h=g.sent(),!ui(sq,c.headers)&&this.applyChecksum&&(c.headers[sq]=h),m=ue(c,a,o),[4,this.getSignature(f,p,this.getSigningKey(t,n,d,u),this.createCanonicalRequest(c,m,h))];case 6:return v=g.sent(),c.headers[sH]=sQ+" "+("Credential="+t.accessKeyId+"/")+p+", SignedHeaders="+up(m)+", Signature="+v,[2,c]}})})},e.prototype.createCanonicalRequest=function(e,t,n){var r=Object.keys(t).sort();return e.method+"\n"+this.getCanonicalPath(e)+"\n"+ut(e)+"\n"+r.map(function(e){return e+":"+t[e]}).join("\n")+"\n\n"+r.join(";")+"\n"+n},e.prototype.createStringToSign=function(e,t,n){return(0,rv.__awaiter)(this,void 0,void 0,function(){var r,i;return(0,rv.__generator)(this,function(o){switch(o.label){case 0:return(r=new this.sha256).update(n),[4,r.digest()];case 1:return[2,sQ+"\n"+e+"\n"+t+"\n"+nW(i=o.sent())]}})})},e.prototype.getCanonicalPath=function(e){var t=e.path;return this.uriEscapePath?"/"+encodeURIComponent(t.replace(/^\//,"")).replace(/%2F/g,"/"):t},e.prototype.getSignature=function(e,t,n,r){return(0,rv.__awaiter)(this,void 0,void 0,function(){var i,o,a,s,u;return(0,rv.__generator)(this,function(c){switch(c.label){case 0:return[4,this.createStringToSign(e,t,r)];case 1:return i=c.sent(),s=(a=this.sha256).bind,[4,n];case 2:return(o=new(s.apply(a,[void 0,c.sent()]))).update(i),u=nW,[4,o.digest()];case 3:return[2,u.apply(void 0,[c.sent()])]}})})},e.prototype.getSigningKey=function(e,t,n,r){return s9(this.sha256,e,n,t,r||this.service)},e}(),ud=function(e){var t=uc(e).replace(/[\-:]/g,"");return{longDate:t,shortDate:t.substr(0,8)}},up=function(e){return Object.keys(e).sort().join(";")},uh=function(e){if("string"!=typeof e)return e;var t=Promise.resolve(e);return function(){return t}},um=function(e){if("object"!=typeof e)return e;var t=Promise.resolve(e);return function(){return t}};function uv(e){var t,n=this,r=e.credentials||e.credentialDefaultProvider(e),i=ug(r),o=e.signingEscapePath,a=void 0===o||o,s=e.systemClockOffset,u=void 0===s?e.systemClockOffset||0:s,c=e.sha256;return t=e.signer?ug(e.signer):function(){return ug(e.region)().then(function(t){return(0,rv.__awaiter)(n,void 0,void 0,function(){return(0,rv.__generator)(this,function(n){switch(n.label){case 0:return[4,e.regionInfoProvider(t)];case 1:return[2,[n.sent()||{},t]]}})})}).then(function(t){var n=(0,rv.__read)(t,2),r=n[0],o=n[1],s=r.signingRegion,u=r.signingService;return e.signingRegion=e.signingRegion||s||o,e.signingName=e.signingName||u||e.serviceId,new uf({credentials:i,region:e.signingRegion,service:e.signingName,sha256:c,uriEscapePath:a})})},(0,rv.__assign)((0,rv.__assign)({},e),{systemClockOffset:u,signingEscapePath:a,credentials:i,signer:t})}function ug(e){if("object"==typeof e){var t=Promise.resolve(e);return function(){return t}}return e}var uy=function(e,t){return Math.abs(ub(t).getTime()-e)>=3e5},ub=function(e){return new Date(Date.now()+e)};function uE(e){return function(t,n){return function(r){return(0,rv.__awaiter)(this,void 0,void 0,function(){var i,o,a,s,u,c,l,f,d;return(0,rv.__generator)(this,function(p){switch(p.label){case 0:if(!rg.isInstance(r.request))return[2,t(r)];if("function"!=typeof e.signer)return[3,2];return[4,e.signer()];case 1:return o=p.sent(),[3,3];case 2:o=e.signer,p.label=3;case 3:return i=o,s=t,u=[(0,rv.__assign)({},r)],d={},[4,i.sign(r.request,{signingDate:new Date(Date.now()+e.systemClockOffset),signingRegion:n.signing_region,signingService:n.signing_service})];case 4:return[4,s.apply(void 0,[rv.__assign.apply(void 0,u.concat([(d.request=p.sent(),d)]))])];case 5:return(l=(c=(a=p.sent()).response.headers)&&(c.date||c.Date))&&uy(f=Date.parse(l),e.systemClockOffset)&&(e.systemClockOffset=f-Date.now()),[2,a]}})})}}}var uw={name:"awsAuthMiddleware",tags:["SIGNATURE","AWSAUTH"],relation:"after",toMiddleware:"retryMiddleware",override:!0},ux=function(e){return{applyToStack:function(t){t.addRelativeTo(uE(e),uw)}}};function u_(e){return(0,rv.__assign)((0,rv.__assign)({},e),{customUserAgent:"string"==typeof e.customUserAgent?[[e.customUserAgent]]:e.customUserAgent})}var uS,uC="user-agent",uA="x-amz-user-agent",uD=" ",uO=/[^\!\#\$\%\&\'\*\+\-\.\^\_\`\|\~\d\w]/g,uk=function(e){return function(t,n){return function(r){return(0,rv.__awaiter)(void 0,void 0,void 0,function(){var i,o,a,s,u,c,l,f;return(0,rv.__generator)(this,function(d){switch(d.label){case 0:if(i=r.request,!rg.isInstance(i))return[2,t(r)];return o=i.headers,a=(null===(l=null==n?void 0:n.userAgent)||void 0===l?void 0:l.map(uT))||[],[4,e.defaultUserAgentProvider()];case 1:return s=d.sent().map(uT),u=(null===(f=null==e?void 0:e.customUserAgent)||void 0===f?void 0:f.map(uT))||[],o[uA]=(0,rv.__spread)(s,a,u).join(uD),c=(0,rv.__spread)(s.filter(function(e){return e.startsWith("aws-sdk-")}),u).join(uD),"browser"!==e.runtime&&c&&(o[uC]=o[uC]?o[uC]+" "+c:c),[2,t((0,rv.__assign)((0,rv.__assign)({},r),{request:i}))]}})})}}},uT=function(e){var t=(0,rv.__read)(e,2),n=t[0],r=t[1],i=n.indexOf("/"),o=n.substring(0,i),a=n.substring(i+1);return"api"===o&&(a=a.toLowerCase()),[o,a,r].filter(function(e){return e&&e.length>0}).map(function(e){return null==e?void 0:e.replace(uO,"_")}).join("/")},uN={name:"getUserAgentMiddleware",step:"build",priority:"low",tags:["SET_USER_AGENT","USER_AGENT"],override:!0},uP=function(e){return{applyToStack:function(t){t.add(uk(e),uN)}}},uI=function(e){function t(t){var n=this,r=rf(rf({},oH),t),i=oq(r),o=oW(i),a=uv(o),s=o_(a),u=o0(s),c=u_(u);return(n=e.call(this,c)||this).config=c,n.middlewareStack.use(ux(n.config)),n.middlewareStack.use(i9(n.config)),n.middlewareStack.use(oQ(n.config)),n.middlewareStack.use(sI(n.config)),n.middlewareStack.use(sR(n.config)),n.middlewareStack.use(uP(n.config)),n}return rl(t,e),t.prototype.destroy=function(){e.prototype.destroy.call(this)},t}(iD),uM={},uF=function(){function e(){}return e.setItem=function(e,t){return uM[e]=t,uM[e]},e.getItem=function(e){return Object.prototype.hasOwnProperty.call(uM,e)?uM[e]:void 0},e.removeItem=function(e){return delete uM[e]},e.clear=function(){return uM={}},e}(),uR=function(){function e(){try{this.storageWindow=window.localStorage,this.storageWindow.setItem("aws.amplify.test-ls",1),this.storageWindow.removeItem("aws.amplify.test-ls")}catch(e){this.storageWindow=uF}}return e.prototype.getStorage=function(){return this.storageWindow},e}(),uL=(uS=function(e,t){return(uS=Object.setPrototypeOf||({__proto__:[]})instanceof Array&&function(e,t){e.__proto__=t}||function(e,t){for(var n in t)t.hasOwnProperty(n)&&(e[n]=t[n])})(e,t)},function(e,t){function n(){this.constructor=e}uS(e,t),e.prototype=null===t?Object.create(t):(n.prototype=t.prototype,new n)}),uj=function(e,t,n,r){function i(e){return e instanceof n?e:new n(function(t){t(e)})}return new(n||(n=Promise))(function(n,o){function a(e){try{u(r.next(e))}catch(t){o(t)}}function s(e){try{u(r.throw(e))}catch(t){o(t)}}function u(e){e.done?n(e.value):i(e.value).then(a,s)}u((r=r.apply(e,t||[])).next())})},uB=function(e,t){var n,r,i,o,a={label:0,sent:function(){if(1&i[0])throw i[1];return i[1]},trys:[],ops:[]};return o={next:s(0),throw:s(1),return:s(2)},"function"==typeof Symbol&&(o[Symbol.iterator]=function(){return this}),o;function s(e){return function(t){return u([e,t])}}function u(o){if(n)throw TypeError("Generator is already executing.");for(;a;)try{if(n=1,r&&(i=2&o[0]?r.return:o[0]?r.throw||((i=r.return)&&i.call(r),0):r.next)&&!(i=i.call(r,o[1])).done)return i;switch(r=0,i&&(o=[2&o[0],i.value]),o[0]){case 0:case 1:i=o;break;case 4:return a.label++,{value:o[1],done:!1};case 5:a.label++,r=o[1],o=[0];continue;case 7:o=a.ops.pop(),a.trys.pop();continue;default:if(!(i=(i=a.trys).length>0&&i[i.length-1])&&(6===o[0]||2===o[0])){a=0;continue}if(3===o[0]&&(!i||o[1]>i[0]&&o[1]0)&&!(r=o.next()).done;)a.push(r.value)}catch(s){i={error:s}}finally{try{r&&!r.done&&(n=o.return)&&n.call(o)}finally{if(i)throw i.error}}return a},uZ=function(){for(var e=[],t=0;te)&&i}}var uq=function(e,t,n){return void 0===n&&(n=u$),uW(e,t,uG(n))},uK=function(e,t,n,r){function i(e){return e instanceof n?e:new n(function(t){t(e)})}return new(n||(n=Promise))(function(n,o){function a(e){try{u(r.next(e))}catch(t){o(t)}}function s(e){try{u(r.throw(e))}catch(t){o(t)}}function u(e){e.done?n(e.value):i(e.value).then(a,s)}u((r=r.apply(e,t||[])).next())})},uY=function(e,t){var n,r,i,o,a={label:0,sent:function(){if(1&i[0])throw i[1];return i[1]},trys:[],ops:[]};return o={next:s(0),throw:s(1),return:s(2)},"function"==typeof Symbol&&(o[Symbol.iterator]=function(){return this}),o;function s(e){return function(t){return u([e,t])}}function u(o){if(n)throw TypeError("Generator is already executing.");for(;a;)try{if(n=1,r&&(i=2&o[0]?r.return:o[0]?r.throw||((i=r.return)&&i.call(r),0):r.next)&&!(i=i.call(r,o[1])).done)return i;switch(r=0,i&&(o=[2&o[0],i.value]),o[0]){case 0:case 1:i=o;break;case 4:return a.label++,{value:o[1],done:!1};case 5:a.label++,r=o[1],o=[0];continue;case 7:o=a.ops.pop(),a.trys.pop();continue;default:if(!(i=(i=a.trys).length>0&&i[i.length-1])&&(6===o[0]||2===o[0])){a=0;continue}if(3===o[0]&&(!i||o[1]>i[0]&&o[1]0&&i[i.length-1])&&(6===o[0]||2===o[0])){a=0;continue}if(3===o[0]&&(!i||o[1]>i[0]&&o[1]0&&i[i.length-1])&&(6===o[0]||2===o[0])){a=0;continue}if(3===o[0]&&(!i||o[1]>i[0]&&o[1]0)&&!(r=o.next()).done;)a.push(r.value)}catch(s){i={error:s}}finally{try{r&&!r.done&&(n=o.return)&&n.call(o)}finally{if(i)throw i.error}}return a}(c$=e0||(e0={})).AUTHENTICATED_ROLE="AuthenticatedRole",c$.DENY="Deny",(cG=e1||(e1={})).filterSensitiveLog=function(e){return u7({},e)},(cq=e2||(e2={})).filterSensitiveLog=function(e){return u7({},e)},(cK=e4||(e4={})).filterSensitiveLog=function(e){return u7({},e)},(cY=e6||(e6={})).filterSensitiveLog=function(e){return u7({},e)},(cX=e3||(e3={})).filterSensitiveLog=function(e){return u7({},e)},(cJ=e8||(e8={})).filterSensitiveLog=function(e){return u7({},e)},(cQ=e5||(e5={})).filterSensitiveLog=function(e){return u7({},e)},(c0=e9||(e9={})).filterSensitiveLog=function(e){return u7({},e)},(c1=e7||(e7={})).filterSensitiveLog=function(e){return u7({},e)},(c2=te||(te={})).filterSensitiveLog=function(e){return u7({},e)},(c4=tt||(tt={})).ACCESS_DENIED="AccessDenied",c4.INTERNAL_SERVER_ERROR="InternalServerError",(c6=tn||(tn={})).filterSensitiveLog=function(e){return u7({},e)},(c3=tr||(tr={})).filterSensitiveLog=function(e){return u7({},e)},(c8=ti||(ti={})).filterSensitiveLog=function(e){return u7({},e)},(c5=to||(to={})).filterSensitiveLog=function(e){return u7({},e)},(c9=ta||(ta={})).filterSensitiveLog=function(e){return u7({},e)},(c7=ts||(ts={})).filterSensitiveLog=function(e){return u7({},e)},(le=tu||(tu={})).filterSensitiveLog=function(e){return u7({},e)},(lt=tc||(tc={})).filterSensitiveLog=function(e){return u7({},e)},(ln=tl||(tl={})).filterSensitiveLog=function(e){return u7({},e)},(lr=tf||(tf={})).filterSensitiveLog=function(e){return u7({},e)},(li=td||(td={})).filterSensitiveLog=function(e){return u7({},e)},(lo=tp||(tp={})).filterSensitiveLog=function(e){return u7({},e)},(la=th||(th={})).filterSensitiveLog=function(e){return u7({},e)},(ls=tm||(tm={})).filterSensitiveLog=function(e){return u7({},e)},(lu=tv||(tv={})).filterSensitiveLog=function(e){return u7({},e)},(lc=tg||(tg={})).CONTAINS="Contains",lc.EQUALS="Equals",lc.NOT_EQUAL="NotEqual",lc.STARTS_WITH="StartsWith",(ll=ty||(ty={})).filterSensitiveLog=function(e){return u7({},e)},(lf=tb||(tb={})).filterSensitiveLog=function(e){return u7({},e)},(ld=tE||(tE={})).RULES="Rules",ld.TOKEN="Token",(lp=tw||(tw={})).filterSensitiveLog=function(e){return u7({},e)},(lh=tx||(tx={})).filterSensitiveLog=function(e){return u7({},e)},(lm=t_||(t_={})).filterSensitiveLog=function(e){return u7({},e)},(lv=tS||(tS={})).filterSensitiveLog=function(e){return u7({},e)},(lg=tC||(tC={})).filterSensitiveLog=function(e){return u7({},e)},(ly=tA||(tA={})).filterSensitiveLog=function(e){return u7({},e)},(lb=tD||(tD={})).filterSensitiveLog=function(e){return u7({},e)},(lE=tO||(tO={})).filterSensitiveLog=function(e){return u7({},e)},(lw=tk||(tk={})).filterSensitiveLog=function(e){return u7({},e)},(lx=tT||(tT={})).filterSensitiveLog=function(e){return u7({},e)},(l_=tN||(tN={})).filterSensitiveLog=function(e){return u7({},e)},(lS=tP||(tP={})).filterSensitiveLog=function(e){return u7({},e)},(lC=tI||(tI={})).filterSensitiveLog=function(e){return u7({},e)},(lA=tM||(tM={})).filterSensitiveLog=function(e){return u7({},e)},(lD=tF||(tF={})).filterSensitiveLog=function(e){return u7({},e)},(lO=tR||(tR={})).filterSensitiveLog=function(e){return u7({},e)},(lk=tL||(tL={})).filterSensitiveLog=function(e){return u7({},e)},(lT=tj||(tj={})).filterSensitiveLog=function(e){return u7({},e)},(lN=tB||(tB={})).filterSensitiveLog=function(e){return u7({},e)},(lP=tU||(tU={})).filterSensitiveLog=function(e){return u7({},e)},(lI=tZ||(tZ={})).filterSensitiveLog=function(e){return u7({},e)},(lM=tV||(tV={})).filterSensitiveLog=function(e){return u7({},e)},(lF=tz||(tz={})).filterSensitiveLog=function(e){return u7({},e)},(lR=tH||(tH={})).filterSensitiveLog=function(e){return u7({},e)},(lL=tW||(tW={})).filterSensitiveLog=function(e){return u7({},e)},(lj=t$||(t$={})).filterSensitiveLog=function(e){return u7({},e)};var cr=function(e,t){return ce(void 0,void 0,void 0,function(){var n,r;return ct(this,function(i){return n={"content-type":"application/x-amz-json-1.1","x-amz-target":"AWSCognitoIdentityService.GetCredentialsForIdentity"},r=JSON.stringify(cy(e,t)),[2,cR(t,n,"/",void 0,r)]})})},ci=function(e,t){return ce(void 0,void 0,void 0,function(){var n,r;return ct(this,function(i){return n={"content-type":"application/x-amz-json-1.1","x-amz-target":"AWSCognitoIdentityService.GetId"},r=JSON.stringify(cb(e,t)),[2,cR(t,n,"/",void 0,r)]})})},co=function(e,t){return ce(void 0,void 0,void 0,function(){var n,r,i;return ct(this,function(o){switch(o.label){case 0:if(e.statusCode>=300)return[2,ca(e,t)];return[4,cL(e.body,t)];case 1:return n=o.sent(),r={},r=c_(n,t),[2,Promise.resolve(i=u7({$metadata:cI(e)},r))]}})})},ca=function(e,t){return ce(void 0,void 0,void 0,function(){var n,r,i,o,a,s,u,c,l,f,d,p,h,m,v,g;return ct(this,function(y){switch(y.label){case 0:return r=[u7({},e)],g={},[4,cL(e.body,t)];case 1:switch(n=u7.apply(void 0,r.concat([(g.body=y.sent(),g)])),o="UnknownError",a=o=cj(e,n.body)){case"ExternalServiceException":case"com.amazonaws.cognitoidentity#ExternalServiceException":return[3,2];case"InternalErrorException":case"com.amazonaws.cognitoidentity#InternalErrorException":return[3,4];case"InvalidIdentityPoolConfigurationException":case"com.amazonaws.cognitoidentity#InvalidIdentityPoolConfigurationException":return[3,6];case"InvalidParameterException":case"com.amazonaws.cognitoidentity#InvalidParameterException":return[3,8];case"NotAuthorizedException":case"com.amazonaws.cognitoidentity#NotAuthorizedException":return[3,10];case"ResourceConflictException":case"com.amazonaws.cognitoidentity#ResourceConflictException":return[3,12];case"ResourceNotFoundException":case"com.amazonaws.cognitoidentity#ResourceNotFoundException":return[3,14];case"TooManyRequestsException":case"com.amazonaws.cognitoidentity#TooManyRequestsException":return[3,16]}return[3,18];case 2:return s=[{}],[4,cc(n,t)];case 3:return i=u7.apply(void 0,[u7.apply(void 0,s.concat([y.sent()])),{name:o,$metadata:cI(e)}]),[3,19];case 4:return u=[{}],[4,cl(n,t)];case 5:return i=u7.apply(void 0,[u7.apply(void 0,u.concat([y.sent()])),{name:o,$metadata:cI(e)}]),[3,19];case 6:return c=[{}],[4,cf(n,t)];case 7:return i=u7.apply(void 0,[u7.apply(void 0,c.concat([y.sent()])),{name:o,$metadata:cI(e)}]),[3,19];case 8:return l=[{}],[4,cd(n,t)];case 9:return i=u7.apply(void 0,[u7.apply(void 0,l.concat([y.sent()])),{name:o,$metadata:cI(e)}]),[3,19];case 10:return f=[{}],[4,ch(n,t)];case 11:return i=u7.apply(void 0,[u7.apply(void 0,f.concat([y.sent()])),{name:o,$metadata:cI(e)}]),[3,19];case 12:return d=[{}],[4,cm(n,t)];case 13:return i=u7.apply(void 0,[u7.apply(void 0,d.concat([y.sent()])),{name:o,$metadata:cI(e)}]),[3,19];case 14:return p=[{}],[4,cv(n,t)];case 15:return i=u7.apply(void 0,[u7.apply(void 0,p.concat([y.sent()])),{name:o,$metadata:cI(e)}]),[3,19];case 16:return h=[{}],[4,cg(n,t)];case 17:return i=u7.apply(void 0,[u7.apply(void 0,h.concat([y.sent()])),{name:o,$metadata:cI(e)}]),[3,19];case 18:o=(m=n.body).code||m.Code||o,i=u7(u7({},m),{name:""+o,message:m.message||m.Message||o,$fault:"client",$metadata:cI(e)}),y.label=19;case 19:return v=i.message||i.Message||o,i.message=v,delete i.Message,[2,Promise.reject(Object.assign(Error(v),i))]}})})},cs=function(e,t){return ce(void 0,void 0,void 0,function(){var n,r,i;return ct(this,function(o){switch(o.label){case 0:if(e.statusCode>=300)return[2,cu(e,t)];return[4,cL(e.body,t)];case 1:return n=o.sent(),r={},r=cS(n,t),[2,Promise.resolve(i=u7({$metadata:cI(e)},r))]}})})},cu=function(e,t){return ce(void 0,void 0,void 0,function(){var n,r,i,o,a,s,u,c,l,f,d,p,h,m,v,g;return ct(this,function(y){switch(y.label){case 0:return r=[u7({},e)],g={},[4,cL(e.body,t)];case 1:switch(n=u7.apply(void 0,r.concat([(g.body=y.sent(),g)])),o="UnknownError",a=o=cj(e,n.body)){case"ExternalServiceException":case"com.amazonaws.cognitoidentity#ExternalServiceException":return[3,2];case"InternalErrorException":case"com.amazonaws.cognitoidentity#InternalErrorException":return[3,4];case"InvalidParameterException":case"com.amazonaws.cognitoidentity#InvalidParameterException":return[3,6];case"LimitExceededException":case"com.amazonaws.cognitoidentity#LimitExceededException":return[3,8];case"NotAuthorizedException":case"com.amazonaws.cognitoidentity#NotAuthorizedException":return[3,10];case"ResourceConflictException":case"com.amazonaws.cognitoidentity#ResourceConflictException":return[3,12];case"ResourceNotFoundException":case"com.amazonaws.cognitoidentity#ResourceNotFoundException":return[3,14];case"TooManyRequestsException":case"com.amazonaws.cognitoidentity#TooManyRequestsException":return[3,16]}return[3,18];case 2:return s=[{}],[4,cc(n,t)];case 3:return i=u7.apply(void 0,[u7.apply(void 0,s.concat([y.sent()])),{name:o,$metadata:cI(e)}]),[3,19];case 4:return u=[{}],[4,cl(n,t)];case 5:return i=u7.apply(void 0,[u7.apply(void 0,u.concat([y.sent()])),{name:o,$metadata:cI(e)}]),[3,19];case 6:return c=[{}],[4,cd(n,t)];case 7:return i=u7.apply(void 0,[u7.apply(void 0,c.concat([y.sent()])),{name:o,$metadata:cI(e)}]),[3,19];case 8:return l=[{}],[4,cp(n,t)];case 9:return i=u7.apply(void 0,[u7.apply(void 0,l.concat([y.sent()])),{name:o,$metadata:cI(e)}]),[3,19];case 10:return f=[{}],[4,ch(n,t)];case 11:return i=u7.apply(void 0,[u7.apply(void 0,f.concat([y.sent()])),{name:o,$metadata:cI(e)}]),[3,19];case 12:return d=[{}],[4,cm(n,t)];case 13:return i=u7.apply(void 0,[u7.apply(void 0,d.concat([y.sent()])),{name:o,$metadata:cI(e)}]),[3,19];case 14:return p=[{}],[4,cv(n,t)];case 15:return i=u7.apply(void 0,[u7.apply(void 0,p.concat([y.sent()])),{name:o,$metadata:cI(e)}]),[3,19];case 16:return h=[{}],[4,cg(n,t)];case 17:return i=u7.apply(void 0,[u7.apply(void 0,h.concat([y.sent()])),{name:o,$metadata:cI(e)}]),[3,19];case 18:o=(m=n.body).code||m.Code||o,i=u7(u7({},m),{name:""+o,message:m.message||m.Message||o,$fault:"client",$metadata:cI(e)}),y.label=19;case 19:return v=i.message||i.Message||o,i.message=v,delete i.Message,[2,Promise.reject(Object.assign(Error(v),i))]}})})},cc=function(e,t){return ce(void 0,void 0,void 0,function(){var n,r,i;return ct(this,function(o){return r=cx(n=e.body,t),[2,i=u7({name:"ExternalServiceException",$fault:"client",$metadata:cI(e)},r)]})})},cl=function(e,t){return ce(void 0,void 0,void 0,function(){var n,r,i;return ct(this,function(o){return r=cC(n=e.body,t),[2,i=u7({name:"InternalErrorException",$fault:"server",$metadata:cI(e)},r)]})})},cf=function(e,t){return ce(void 0,void 0,void 0,function(){var n,r,i;return ct(this,function(o){return r=cA(n=e.body,t),[2,i=u7({name:"InvalidIdentityPoolConfigurationException",$fault:"client",$metadata:cI(e)},r)]})})},cd=function(e,t){return ce(void 0,void 0,void 0,function(){var n,r,i;return ct(this,function(o){return r=cD(n=e.body,t),[2,i=u7({name:"InvalidParameterException",$fault:"client",$metadata:cI(e)},r)]})})},cp=function(e,t){return ce(void 0,void 0,void 0,function(){var n,r,i;return ct(this,function(o){return r=cO(n=e.body,t),[2,i=u7({name:"LimitExceededException",$fault:"client",$metadata:cI(e)},r)]})})},ch=function(e,t){return ce(void 0,void 0,void 0,function(){var n,r,i;return ct(this,function(o){return r=ck(n=e.body,t),[2,i=u7({name:"NotAuthorizedException",$fault:"client",$metadata:cI(e)},r)]})})},cm=function(e,t){return ce(void 0,void 0,void 0,function(){var n,r,i;return ct(this,function(o){return r=cT(n=e.body,t),[2,i=u7({name:"ResourceConflictException",$fault:"client",$metadata:cI(e)},r)]})})},cv=function(e,t){return ce(void 0,void 0,void 0,function(){var n,r,i;return ct(this,function(o){return r=cN(n=e.body,t),[2,i=u7({name:"ResourceNotFoundException",$fault:"client",$metadata:cI(e)},r)]})})},cg=function(e,t){return ce(void 0,void 0,void 0,function(){var n,r,i;return ct(this,function(o){return r=cP(n=e.body,t),[2,i=u7({name:"TooManyRequestsException",$fault:"client",$metadata:cI(e)},r)]})})},cy=function(e,t){return u7(u7(u7({},void 0!==e.CustomRoleArn&&null!==e.CustomRoleArn&&{CustomRoleArn:e.CustomRoleArn}),void 0!==e.IdentityId&&null!==e.IdentityId&&{IdentityId:e.IdentityId}),void 0!==e.Logins&&null!==e.Logins&&{Logins:cE(e.Logins,t)})},cb=function(e,t){return u7(u7(u7({},void 0!==e.AccountId&&null!==e.AccountId&&{AccountId:e.AccountId}),void 0!==e.IdentityPoolId&&null!==e.IdentityPoolId&&{IdentityPoolId:e.IdentityPoolId}),void 0!==e.Logins&&null!==e.Logins&&{Logins:cE(e.Logins,t)})},cE=function(e,t){return Object.entries(e).reduce(function(e,t){var n,r=cn(t,2),i=r[0],o=r[1];return null===o?e:u7(u7({},e),((n={})[i]=o,n))},{})},cw=function(e,t){return{AccessKeyId:void 0!==e.AccessKeyId&&null!==e.AccessKeyId?e.AccessKeyId:void 0,Expiration:void 0!==e.Expiration&&null!==e.Expiration?new Date(Math.round(1e3*e.Expiration)):void 0,SecretKey:void 0!==e.SecretKey&&null!==e.SecretKey?e.SecretKey:void 0,SessionToken:void 0!==e.SessionToken&&null!==e.SessionToken?e.SessionToken:void 0}},cx=function(e,t){return{message:void 0!==e.message&&null!==e.message?e.message:void 0}},c_=function(e,t){return{Credentials:void 0!==e.Credentials&&null!==e.Credentials?cw(e.Credentials,t):void 0,IdentityId:void 0!==e.IdentityId&&null!==e.IdentityId?e.IdentityId:void 0}},cS=function(e,t){return{IdentityId:void 0!==e.IdentityId&&null!==e.IdentityId?e.IdentityId:void 0}},cC=function(e,t){return{message:void 0!==e.message&&null!==e.message?e.message:void 0}},cA=function(e,t){return{message:void 0!==e.message&&null!==e.message?e.message:void 0}},cD=function(e,t){return{message:void 0!==e.message&&null!==e.message?e.message:void 0}},cO=function(e,t){return{message:void 0!==e.message&&null!==e.message?e.message:void 0}},ck=function(e,t){return{message:void 0!==e.message&&null!==e.message?e.message:void 0}},cT=function(e,t){return{message:void 0!==e.message&&null!==e.message?e.message:void 0}},cN=function(e,t){return{message:void 0!==e.message&&null!==e.message?e.message:void 0}},cP=function(e,t){return{message:void 0!==e.message&&null!==e.message?e.message:void 0}},cI=function(e){var t;return{httpStatusCode:e.statusCode,requestId:null!==(t=e.headers["x-amzn-requestid"])&&void 0!==t?t:e.headers["x-amzn-request-id"],extendedRequestId:e.headers["x-amz-id-2"],cfId:e.headers["x-amz-cf-id"]}},cM=function(e,t){return(void 0===e&&(e=new Uint8Array),e instanceof Uint8Array)?Promise.resolve(e):t.streamCollector(e)||Promise.resolve(new Uint8Array)},cF=function(e,t){return cM(e,t).then(function(e){return t.utf8Encoder(e)})},cR=function(e,t,n,r,i){return ce(void 0,void 0,void 0,function(){var o,a,s,u,c,l;return ct(this,function(f){switch(f.label){case 0:return[4,e.endpoint()];case 1:return a=(o=f.sent()).hostname,l={protocol:u=void 0===(s=o.protocol)?"https":s,hostname:a,port:c=o.port,method:"POST",path:n,headers:t},void 0!==r&&(l.hostname=r),void 0!==i&&(l.body=i),[2,new rg(l)]}})})},cL=function(e,t){return cF(e,t).then(function(e){return e.length?JSON.parse(e):{}})},cj=function(e,t){var n,r,i=function(e){var t=e;return t.indexOf(":")>=0&&(t=t.split(":")[0]),t.indexOf("#")>=0&&(t=t.split("#")[1]),t},o=(n=e.headers,r="x-amzn-errortype",Object.keys(n).find(function(e){return e.toLowerCase()===r.toLowerCase()}));return void 0!==o?i(e.headers[o]):void 0!==t.code?i(t.code):void 0!==t.__type?i(t.__type):""},cB=function(e){function t(t){var n=e.call(this)||this;return n.input=t,n}return u9(t,e),t.prototype.resolveMiddleware=function(e,t,n){this.middlewareStack.use(i_(t,this.serialize,this.deserialize));var r,i=e.concat(this.middlewareStack),o={logger:t.logger,clientName:"CognitoIdentityClient",commandName:"GetCredentialsForIdentityCommand",inputFilterSensitiveLog:tl.filterSensitiveLog,outputFilterSensitiveLog:td.filterSensitiveLog},a=t.requestHandler;return i.resolve(function(e){return a.handle(e.request,n||{})},o)},t.prototype.serialize=function(e,t){return cr(e,t)},t.prototype.deserialize=function(e,t){return co(e,t)},t}(iO),cU=function(e){function t(t,n){void 0===n&&(n=!0);var r=e.call(this,t)||this;return r.tryNextLink=n,r}return(0,rv.__extends)(t,e),t}(Error);function cZ(e){return Promise.all(Object.keys(e).reduce(function(t,n){var r=e[n];return"string"==typeof r?t.push([n,r]):t.push(r().then(function(e){return[n,e]})),t},[])).then(function(e){return e.reduce(function(e,t){var n=(0,rv.__read)(t,2),r=n[0],i=n[1];return e[r]=i,e},{})})}function cV(e){var t=this;return function(){return(0,rv.__awaiter)(t,void 0,void 0,function(){var t,n,r,i,o,a,s,u,c,l,f,d,p;return(0,rv.__generator)(this,function(h){switch(h.label){case 0:if(l=(c=e.client).send,f=cB.bind,p={CustomRoleArn:e.customRoleArn,IdentityId:e.identityId},!e.logins)return[3,2];return[4,cZ(e.logins)];case 1:return d=h.sent(),[3,3];case 2:d=void 0,h.label=3;case 3:return[4,l.apply(c,[new(f.apply(cB,[void 0,(p.Logins=d,p)]))])];case 4:return i=void 0===(r=(n=void 0===(t=h.sent().Credentials)?cH():t).AccessKeyId)?cz():r,o=n.Expiration,s=void 0===(a=n.SecretKey)?cW():a,u=n.SessionToken,[2,{identityId:e.identityId,accessKeyId:i,secretAccessKey:s,sessionToken:u,expiration:o}]}})})}}function cz(){throw new cU("Response from Amazon Cognito contained no access key ID")}function cH(){throw new cU("Response from Amazon Cognito contained no credentials")}function cW(){throw new cU("Response from Amazon Cognito contained no secret key")}var c$,cG,cq,cK,cY,cX,cJ,cQ,c0,c1,c2,c4,c6,c3,c8,c5,c9,c7,le,lt,ln,lr,li,lo,la,ls,lu,lc,ll,lf,ld,lp,lh,lm,lv,lg,ly,lb,lE,lw,lx,l_,lS,lC,lA,lD,lO,lk,lT,lN,lP,lI,lM,lF,lR,lL,lj,lB=function(e){function t(t){var n=e.call(this)||this;return n.input=t,n}return u9(t,e),t.prototype.resolveMiddleware=function(e,t,n){this.middlewareStack.use(i_(t,this.serialize,this.deserialize));var r,i=e.concat(this.middlewareStack),o={logger:t.logger,clientName:"CognitoIdentityClient",commandName:"GetIdCommand",inputFilterSensitiveLog:th.filterSensitiveLog,outputFilterSensitiveLog:tm.filterSensitiveLog},a=t.requestHandler;return i.resolve(function(e){return a.handle(e.request,n||{})},o)},t.prototype.serialize=function(e,t){return ci(e,t)},t.prototype.deserialize=function(e,t){return cs(e,t)},t}(iO),lU="IdentityIds",lZ=function(){function e(e){void 0===e&&(e="aws:cognito-identity-ids"),this.dbName=e}return e.prototype.getItem=function(e){return this.withObjectStore("readonly",function(t){var n=t.get(e);return new Promise(function(e){n.onerror=function(){return e(null)},n.onsuccess=function(){return e(n.result?n.result.value:null)}})}).catch(function(){return null})},e.prototype.removeItem=function(e){return this.withObjectStore("readwrite",function(t){var n=t.delete(e);return new Promise(function(e,t){n.onerror=function(){return t(n.error)},n.onsuccess=function(){return e()}})})},e.prototype.setItem=function(e,t){return this.withObjectStore("readwrite",function(n){var r=n.put({id:e,value:t});return new Promise(function(e,t){r.onerror=function(){return t(r.error)},r.onsuccess=function(){return e()}})})},e.prototype.getDb=function(){var e=self.indexedDB.open(this.dbName,1);return new Promise(function(t,n){e.onsuccess=function(){t(e.result)},e.onerror=function(){n(e.error)},e.onblocked=function(){n(Error("Unable to access DB"))},e.onupgradeneeded=function(){var t=e.result;t.onerror=function(){n(Error("Failed to create object store"))},t.createObjectStore(lU,{keyPath:"id"})}})},e.prototype.withObjectStore=function(e,t){return this.getDb().then(function(n){var r=n.transaction(lU,e);return r.oncomplete=function(){return n.close()},new Promise(function(e,n){r.onerror=function(){return n(r.error)},e(t(r.objectStore(lU)))}).catch(function(e){throw n.close(),e})})},e}(),lV=new(function(){function e(e){void 0===e&&(e={}),this.store=e}return e.prototype.getItem=function(e){return e in this.store?this.store[e]:null},e.prototype.removeItem=function(e){delete this.store[e]},e.prototype.setItem=function(e,t){this.store[e]=t},e}());function lz(){return"object"==typeof self&&self.indexedDB?new lZ:"object"==typeof window&&window.localStorage?window.localStorage:lV}function lH(e){var t=this,n=e.accountId,r=e.cache,i=void 0===r?lz():r,o=e.client,a=e.customRoleArn,s=e.identityPoolId,u=e.logins,c=e.userIdentifier,l=void 0===c?u&&0!==Object.keys(u).length?void 0:"ANONYMOUS":c,f=l?"aws:cognito-identity-credentials:"+s+":"+l:void 0,d=function(){return(0,rv.__awaiter)(t,void 0,void 0,function(){var e,t,r,c,l,p,h,m,v;return(0,rv.__generator)(this,function(g){switch(g.label){case 0:if(!(t=f))return[3,2];return[4,i.getItem(f)];case 1:t=g.sent(),g.label=2;case 2:if(e=t)return[3,7];if(p=(l=o).send,h=lB.bind,v={AccountId:n,IdentityPoolId:s},!u)return[3,4];return[4,cZ(u)];case 3:return m=g.sent(),[3,5];case 4:m=void 0,g.label=5;case 5:return[4,p.apply(l,[new(h.apply(lB,[void 0,(v.Logins=m,v)]))])];case 6:e=c=void 0===(r=g.sent().IdentityId)?lW():r,f&&Promise.resolve(i.setItem(f,e)).catch(function(){}),g.label=7;case 7:return[2,(d=cV({client:o,customRoleArn:a,logins:u,identityId:e}))()]}})})};return function(){return d().catch(function(e){return(0,rv.__awaiter)(t,void 0,void 0,function(){return(0,rv.__generator)(this,function(t){throw f&&Promise.resolve(i.removeItem(f)).catch(function(){}),e})})})}}function lW(){throw new cU("Response from Amazon Cognito contained no identity ID")}var l$={i8:"3.6.1"},lG="cognito-identity.{region}.amazonaws.com",lq="cognito-identity.{region}.amazonaws.com.cn",lK="cognito-identity.{region}.c2s.ic.gov",lY="cognito-identity.{region}.sc2s.sgov.gov",lX="cognito-identity.{region}.amazonaws.com",lJ=new Set(["af-south-1","ap-east-1","ap-northeast-1","ap-northeast-2","ap-south-1","ap-southeast-1","ap-southeast-2","ca-central-1","eu-central-1","eu-north-1","eu-south-1","eu-west-1","eu-west-2","eu-west-3","me-south-1","sa-east-1","us-east-1","us-east-2","us-west-1","us-west-2",]),lQ=new Set(["cn-north-1","cn-northwest-1"]),l0=new Set(["us-iso-east-1"]),l1=new Set(["us-isob-east-1"]),l2=new Set(["us-gov-east-1","us-gov-west-1"]),l4={apiVersion:"2014-06-30",disableHostPrefix:!1,logger:{},regionInfoProvider:function(e,t){var n=void 0;switch(e){case"ap-northeast-1":n={hostname:"cognito-identity.ap-northeast-1.amazonaws.com",partition:"aws"};break;case"ap-northeast-2":n={hostname:"cognito-identity.ap-northeast-2.amazonaws.com",partition:"aws"};break;case"ap-south-1":n={hostname:"cognito-identity.ap-south-1.amazonaws.com",partition:"aws"};break;case"ap-southeast-1":n={hostname:"cognito-identity.ap-southeast-1.amazonaws.com",partition:"aws"};break;case"ap-southeast-2":n={hostname:"cognito-identity.ap-southeast-2.amazonaws.com",partition:"aws"};break;case"ca-central-1":n={hostname:"cognito-identity.ca-central-1.amazonaws.com",partition:"aws"};break;case"cn-north-1":n={hostname:"cognito-identity.cn-north-1.amazonaws.com.cn",partition:"aws-cn"};break;case"eu-central-1":n={hostname:"cognito-identity.eu-central-1.amazonaws.com",partition:"aws"};break;case"eu-north-1":n={hostname:"cognito-identity.eu-north-1.amazonaws.com",partition:"aws"};break;case"eu-west-1":n={hostname:"cognito-identity.eu-west-1.amazonaws.com",partition:"aws"};break;case"eu-west-2":n={hostname:"cognito-identity.eu-west-2.amazonaws.com",partition:"aws"};break;case"eu-west-3":n={hostname:"cognito-identity.eu-west-3.amazonaws.com",partition:"aws"};break;case"fips-us-east-1":n={hostname:"cognito-identity-fips.us-east-1.amazonaws.com",partition:"aws",signingRegion:"us-east-1"};break;case"fips-us-east-2":n={hostname:"cognito-identity-fips.us-east-2.amazonaws.com",partition:"aws",signingRegion:"us-east-2"};break;case"fips-us-gov-west-1":n={hostname:"cognito-identity-fips.us-gov-west-1.amazonaws.com",partition:"aws-us-gov",signingRegion:"us-gov-west-1"};break;case"fips-us-west-2":n={hostname:"cognito-identity-fips.us-west-2.amazonaws.com",partition:"aws",signingRegion:"us-west-2"};break;case"sa-east-1":n={hostname:"cognito-identity.sa-east-1.amazonaws.com",partition:"aws"};break;case"us-east-1":n={hostname:"cognito-identity.us-east-1.amazonaws.com",partition:"aws"};break;case"us-east-2":n={hostname:"cognito-identity.us-east-2.amazonaws.com",partition:"aws"};break;case"us-gov-west-1":n={hostname:"cognito-identity.us-gov-west-1.amazonaws.com",partition:"aws-us-gov"};break;case"us-west-1":n={hostname:"cognito-identity.us-west-1.amazonaws.com",partition:"aws"};break;case"us-west-2":n={hostname:"cognito-identity.us-west-2.amazonaws.com",partition:"aws"};break;default:lJ.has(e)&&(n={hostname:lG.replace("{region}",e),partition:"aws"}),lQ.has(e)&&(n={hostname:lq.replace("{region}",e),partition:"aws-cn"}),l0.has(e)&&(n={hostname:lK.replace("{region}",e),partition:"aws-iso"}),l1.has(e)&&(n={hostname:lY.replace("{region}",e),partition:"aws-iso-b"}),l2.has(e)&&(n={hostname:lX.replace("{region}",e),partition:"aws-us-gov"}),void 0===n&&(n={hostname:lG.replace("{region}",e),partition:"aws"})}return Promise.resolve(u7({signingService:"cognito-identity"},n))},serviceId:"Cognito Identity",urlParser:oV},l6=u7(u7({},l4),{runtime:"browser",base64Decoder:iQ,base64Encoder:i0,bodyLengthChecker:oC,credentialDefaultProvider:function(e){return function(){return Promise.reject(Error("Credential is missing"))}},defaultUserAgentProvider:oO({serviceId:l4.serviceId,clientVersion:l$.i8}),maxAttempts:oE,region:i3("Region is missing"),requestHandler:new iV,sha256:iL.Sha256,streamCollector:i1,utf8Decoder:ok.fromUtf8,utf8Encoder:ok.toUtf8}),l3=function(e){function t(t){var n=this,r=u7(u7({},l6),t),i=oq(r),o=oW(i),a=uv(o),s=o_(a),u=o0(s),c=u_(u);return(n=e.call(this,c)||this).config=c,n.middlewareStack.use(i9(n.config)),n.middlewareStack.use(oQ(n.config)),n.middlewareStack.use(sI(n.config)),n.middlewareStack.use(sR(n.config)),n.middlewareStack.use(uP(n.config)),n}return u9(t,e),t.prototype.destroy=function(){e.prototype.destroy.call(this)},t}(iD),l8=function(){return(l8=Object.assign||function(e){for(var t,n=1,r=arguments.length;n0&&i[i.length-1])&&(6===o[0]||2===o[0])){a=0;continue}if(3===o[0]&&(!i||o[1]>i[0]&&o[1]new Date().getTime())?(l7.debug("token not expired"),this._setCredentialsFromFederation({provider:t,token:r,user:n,identity_id:i,expires_at:o})):a._refreshHandlers[t]&&"function"==typeof a._refreshHandlers[t]?(l7.debug("getting refreshed jwt token from federation provider"),this._providerRefreshWithRetry({refreshHandler:a._refreshHandlers[t],provider:t,user:n})):(l7.debug("no refresh handler for provider:",t),this.clear(),Promise.reject("no refresh handler for provider"))},e.prototype._providerRefreshWithRetry=function(e){var t=this,n=e.refreshHandler,r=e.provider,i=e.user;return uq(n,[],1e4).then(function(e){return l7.debug("refresh federated token sucessfully",e),t._setCredentialsFromFederation({provider:r,token:e.token,user:i,identity_id:e.identity_id,expires_at:e.expires_at})}).catch(function(e){return"string"==typeof e&&0===e.toLowerCase().lastIndexOf("network error",e.length)||t.clear(),l7.debug("refresh federated token failed",e),Promise.reject("refreshing federation token failed: "+e)})},e.prototype._isExpired=function(e){if(!e)return l7.debug("no credentials for expiration check"),!0;l7.debug("are these credentials expired?",e);var t=Date.now();return e.expiration.getTime()<=t},e.prototype._isPastTTL=function(){return this._nextCredentialsRefresh<=Date.now()},e.prototype._setCredentialsForGuest=function(){return l5(this,void 0,void 0,function(){var e,t,n,r,i,o,a,s,u=this;return l9(this,function(c){switch(c.label){case 0:if(l7.debug("setting credentials for guest"),t=(e=this._config).identityPoolId,n=e.region,r=e.mandatorySignIn)return[2,Promise.reject("cannot get guest credentials when mandatory signin enabled")];if(!t)return l7.debug("No Cognito Identity pool provided for unauthenticated access"),[2,Promise.reject("No Cognito Identity pool provided for unauthenticated access")];if(!n)return l7.debug("region is not configured for getting the credentials"),[2,Promise.reject("region is not configured for getting the credentials")];return o=this,[4,this._getGuestIdentityId()];case 1:return i=o._identityId=c.sent(),a=new l3({region:n,customUserAgent:nn()}),s=void 0,s=i?cV({identityId:i,client:a})():l5(u,void 0,void 0,function(){var e,n;return l9(this,function(r){switch(r.label){case 0:return[4,a.send(new lB({IdentityPoolId:t}))];case 1:return e=r.sent().IdentityId,this._identityId=e,[2,(n=cV({client:a,identityId:e}))()]}})}).catch(function(e){return l5(u,void 0,void 0,function(){return l9(this,function(t){throw e})})}),[2,this._loadCredentials(s,"guest",!1,null).then(function(e){return e}).catch(function(e){return l5(u,void 0,void 0,function(){var n=this;return l9(this,function(r){switch(r.label){case 0:if(!("ResourceNotFoundException"===e.name&&e.message==="Identity '"+i+"' not found."))return[3,2];return l7.debug("Failed to load guest credentials"),[4,this._removeGuestIdentityId()];case 1:return r.sent(),s=l5(n,void 0,void 0,function(){var e,n;return l9(this,function(r){switch(r.label){case 0:return[4,a.send(new lB({IdentityPoolId:t}))];case 1:return e=r.sent().IdentityId,this._identityId=e,[2,(n=cV({client:a,identityId:e}))()]}})}).catch(function(e){return l5(n,void 0,void 0,function(){return l9(this,function(t){throw e})})}),[2,this._loadCredentials(s,"guest",!1,null)];case 2:return[2,e]}})})})]}})})},e.prototype._setCredentialsFromFederation=function(e){var t=e.provider,n=e.token,r=e.identity_id,i={google:"accounts.google.com",facebook:"graph.facebook.com",amazon:"www.amazon.com",developer:"cognito-identity.amazonaws.com"}[t]||t;if(!i)return Promise.reject("You must specify a federated provider");var o={};o[i]=n;var a=this._config,s=a.identityPoolId,u=a.region;if(!s)return l7.debug("No Cognito Federated Identity pool provided"),Promise.reject("No Cognito Federated Identity pool provided");if(!u)return l7.debug("region is not configured for getting the credentials"),Promise.reject("region is not configured for getting the credentials");var c=new l3({region:u,customUserAgent:nn()}),l=void 0;if(r){var f={identityId:r,logins:o,client:c};l=cV(f)()}else{var f={logins:o,identityPoolId:s,client:c};l=lH(f)()}return this._loadCredentials(l,"federated",!0,e)},e.prototype._setCredentialsFromSession=function(e){var t=this;l7.debug("set credentials from session");var n=e.getIdToken().getJwtToken(),r=this._config,i=r.region,o=r.userPoolId,a=r.identityPoolId;if(!a)return l7.debug("No Cognito Federated Identity pool provided"),Promise.reject("No Cognito Federated Identity pool provided");if(!i)return l7.debug("region is not configured for getting the credentials"),Promise.reject("region is not configured for getting the credentials");var s={};s["cognito-idp."+i+".amazonaws.com/"+o]=n;var u=new l3({region:i,customUserAgent:nn()}),c=l5(t,void 0,void 0,function(){var e,t,n,r,i,o,c,l,f,d;return l9(this,function(p){switch(p.label){case 0:return[4,this._getGuestIdentityId()];case 1:if(e=p.sent())return[3,3];return[4,u.send(new lB({IdentityPoolId:a,Logins:s}))];case 2:t=n=p.sent().IdentityId,p.label=3;case 3:return[4,u.send(new cB({IdentityId:e||t,Logins:s}))];case 4:if(o=(i=(r=p.sent()).Credentials).AccessKeyId,c=i.Expiration,l=i.SecretKey,f=i.SessionToken,d=r.IdentityId,this._identityId=d,!e)return[3,6];return l7.debug("The guest identity "+e+" has been successfully linked to the logins"),e===d&&l7.debug("The guest identity "+e+" has become the primary identity"),[4,this._removeGuestIdentityId()];case 5:p.sent(),p.label=6;case 6:return[2,{accessKeyId:o,secretAccessKey:l,sessionToken:f,expiration:c,identityId:d}]}})}).catch(function(e){return l5(t,void 0,void 0,function(){return l9(this,function(t){throw e})})});return this._loadCredentials(c,"userPool",!0,null)},e.prototype._loadCredentials=function(e,t,n,r){var i=this,o=this;return new Promise(function(a,s){e.then(function(e){return l5(i,void 0,void 0,function(){var i,s,u,c,l;return l9(this,function(f){switch(f.label){case 0:if(l7.debug("Load credentials successfully",e),this._identityId&&!e.identityId&&(e.identityId=this._identityId),o._credentials=e,o._credentials.authenticated=n,o._credentials_source=t,o._nextCredentialsRefresh=new Date().getTime()+fe,"federated"===t){i=Object.assign({id:this._credentials.identityId},r.user),s=r.provider,u=r.token,c=r.expires_at,l=r.identity_id;try{this._storage.setItem("aws-amplify-federatedInfo",JSON.stringify({provider:s,token:u,user:i,expires_at:c,identity_id:l}))}catch(d){l7.debug("Failed to put federated info into auth storage",d)}}if("guest"!==t)return[3,2];return[4,this._setGuestIdentityId(e.identityId)];case 1:f.sent(),f.label=2;case 2:return a(o._credentials),[2]}})})}).catch(function(t){if(t){l7.debug("Failed to load credentials",e),l7.debug("Error loading credentials",t),s(t);return}})})},e.prototype.set=function(e,t){return"session"===t?this._setCredentialsFromSession(e):"federation"===t?this._setCredentialsFromFederation(e):"guest"===t?this._setCredentialsForGuest():(l7.debug("no source specified for setting credentials"),Promise.reject("invalid source"))},e.prototype.clear=function(){return l5(this,void 0,void 0,function(){return l9(this,function(e){return this._credentials=null,this._credentials_source=null,l7.debug("removing aws-amplify-federatedInfo from storage"),this._storage.removeItem("aws-amplify-federatedInfo"),[2]})})},e.prototype._getGuestIdentityId=function(){return l5(this,void 0,void 0,function(){var e,t;return l9(this,function(n){switch(n.label){case 0:e=this._config.identityPoolId,n.label=1;case 1:return n.trys.push([1,3,,4]),[4,this._storageSync];case 2:return n.sent(),[2,this._storage.getItem(this._getCognitoIdentityIdStorageKey(e))];case 3:return t=n.sent(),l7.debug("Failed to get the cached guest identityId",t),[3,4];case 4:return[2]}})})},e.prototype._setGuestIdentityId=function(e){return l5(this,void 0,void 0,function(){var t,n;return l9(this,function(r){switch(r.label){case 0:t=this._config.identityPoolId,r.label=1;case 1:return r.trys.push([1,3,,4]),[4,this._storageSync];case 2:return r.sent(),this._storage.setItem(this._getCognitoIdentityIdStorageKey(t),e),[3,4];case 3:return n=r.sent(),l7.debug("Failed to cache guest identityId",n),[3,4];case 4:return[2]}})})},e.prototype._removeGuestIdentityId=function(){return l5(this,void 0,void 0,function(){var e;return l9(this,function(t){return e=this._config.identityPoolId,l7.debug("removing "+this._getCognitoIdentityIdStorageKey(e)+" from storage"),this._storage.removeItem(this._getCognitoIdentityIdStorageKey(e)),[2]})})},e.prototype.shear=function(e){return{accessKeyId:e.accessKeyId,sessionToken:e.sessionToken,secretAccessKey:e.secretAccessKey,identityId:e.identityId,authenticated:e.authenticated}},e}(),fr=new fn(null);t7.register(fr);var fi=function(e,t,n,r){function i(e){return e instanceof n?e:new n(function(t){t(e)})}return new(n||(n=Promise))(function(n,o){function a(e){try{u(r.next(e))}catch(t){o(t)}}function s(e){try{u(r.throw(e))}catch(t){o(t)}}function u(e){e.done?n(e.value):i(e.value).then(a,s)}u((r=r.apply(e,t||[])).next())})},fo=function(e,t){var n,r,i,o,a={label:0,sent:function(){if(1&i[0])throw i[1];return i[1]},trys:[],ops:[]};return o={next:s(0),throw:s(1),return:s(2)},"function"==typeof Symbol&&(o[Symbol.iterator]=function(){return this}),o;function s(e){return function(t){return u([e,t])}}function u(o){if(n)throw TypeError("Generator is already executing.");for(;a;)try{if(n=1,r&&(i=2&o[0]?r.return:o[0]?r.throw||((i=r.return)&&i.call(r),0):r.next)&&!(i=i.call(r,o[1])).done)return i;switch(r=0,i&&(o=[2&o[0],i.value]),o[0]){case 0:case 1:i=o;break;case 4:return a.label++,{value:o[1],done:!1};case 5:a.label++,r=o[1],o=[0];continue;case 7:o=a.ops.pop(),a.trys.pop();continue;default:if(!(i=(i=a.trys).length>0&&i[i.length-1])&&(6===o[0]||2===o[0])){a=0;continue}if(3===o[0]&&(!i||o[1]>i[0]&&o[1]0)&&!(r=o.next()).done;)a.push(r.value)}catch(s){i={error:s}}finally{try{r&&!r.done&&(n=o.return)&&n.call(o)}finally{if(i)throw i.error}}return a},fs=function(){for(var e=[],t=0;t0)return this._dataTracker.verifiedLogGroup=r[0],[2,r[0]];return[4,this.createLogGroup({logGroupName:e})];case 4:return a.sent(),[2,null];case 5:throw o="failure during log group search: "+(i=a.sent()),fu.error(o),i;case 6:return[2]}})})},e.prototype._validateLogStreamExists=function(e,t){return fi(this,void 0,void 0,function(){var n,r,i,o,a;return fo(this,function(s){switch(s.label){case 0:return s.trys.push([0,4,,5]),[4,this._ensureCredentials()];case 1:if(!(n=s.sent()))throw Error(tQ);return[4,this.getLogStreams({logGroupName:e,logStreamNamePrefix:t})];case 2:if((r=s.sent()).logStreams&&(i=r.logStreams.filter(function(e){return e.logStreamName===t})).length>0)return this._nextSequenceToken=i[0].uploadSequenceToken,[2,i[0]];return[4,this.createLogStream({logGroupName:e,logStreamName:t})];case 3:return s.sent(),[2,null];case 4:throw a="failure during log stream search: "+(o=s.sent()),fu.error(a),o;case 5:return[2]}})})},e.prototype._sendLogEvents=function(e){return fi(this,void 0,void 0,function(){var t,n,r,i,o,a;return fo(this,function(s){switch(s.label){case 0:return s.trys.push([0,3,,4]),[4,this._ensureCredentials()];case 1:if(!(t=s.sent()))throw Error(tQ);return fu.debug("sending log events to stream - ",e.logStreamName),n=new iF(e),[4,(r=this._initCloudWatchLogs()).send(n)];case 2:return[2,i=s.sent()];case 3:return a="failure during log push: "+(o=s.sent()),fu.error(a),[3,4];case 4:return[2]}})})},e.prototype._initCloudWatchLogs=function(){return new uI({region:this._config.region,credentials:this._config.credentials,customUserAgent:nn(),endpoint:this._config.endpoint})},e.prototype._ensureCredentials=function(){return fi(this,void 0,void 0,function(){var e=this;return fo(this,function(t){switch(t.label){case 0:return[4,fr.get().then(function(t){if(!t)return!1;var n=fr.shear(t);return fu.debug("set credentials for logging",n),e._config.credentials=n,!0}).catch(function(e){return fu.warn("ensure credentials error",e),!1})];case 1:return[2,t.sent()]}})})},e.prototype._getNextSequenceToken=function(){return fi(this,void 0,void 0,function(){var e,t;return fo(this,function(n){switch(n.label){case 0:if(this._nextSequenceToken&&this._nextSequenceToken.length>0)return[2,this._nextSequenceToken];n.label=1;case 1:return n.trys.push([1,4,,5]),[4,this._validateLogGroupExistsAndCreate(this._config.logGroupName)];case 2:return n.sent(),this._nextSequenceToken=void 0,[4,this._validateLogStreamExists(this._config.logGroupName,this._config.logStreamName)];case 3:return(e=n.sent())&&(this._nextSequenceToken=e.uploadSequenceToken),[2,this._nextSequenceToken];case 4:throw t=n.sent(),fu.error("failure while getting next sequence token: "+t),t;case 5:return[2]}})})},e.prototype._safeUploadLogEvents=function(){return fi(this,void 0,void 0,function(){var e,t,n,r,i;return fo(this,function(o){switch(o.label){case 0:return o.trys.push([0,3,,4]),[4,this._getNextSequenceToken()];case 1:return e=o.sent(),t=0===this._currentLogBatch.length?this._getBufferedBatchOfLogs():this._currentLogBatch,n={logGroupName:this._config.logGroupName,logStreamName:this._config.logStreamName,logEvents:t,sequenceToken:e},this._dataTracker.eventUploadInProgress=!0,[4,this._sendLogEvents(n)];case 2:return r=o.sent(),this._nextSequenceToken=r.nextSequenceToken,this._dataTracker.eventUploadInProgress=!1,this._currentLogBatch=[],[2,r];case 3:if(i=o.sent(),fu.error("error during _safeUploadLogEvents: "+i),t0.includes(i.name))this._getNewSequenceTokenAndSubmit({logEvents:this._currentLogBatch,logGroupName:this._config.logGroupName,logStreamName:this._config.logStreamName});else throw this._dataTracker.eventUploadInProgress=!1,i;return[3,4];case 4:return[2]}})})},e.prototype._getBufferedBatchOfLogs=function(){for(var e=0,t=0;etY){var i="Log entry exceeds maximum size for CloudWatch logs. Log size: "+r+". Truncating log message.";fu.warn(i),n.message=n.message.substring(0,r)}if(t+r>tK)break;t+=r,e++}return this._currentLogBatch=this._dataTracker.logEvents.splice(0,e),this._currentLogBatch},e.prototype._getNewSequenceTokenAndSubmit=function(e){return fi(this,void 0,void 0,function(){var t,n,r;return fo(this,function(i){switch(i.label){case 0:return i.trys.push([0,3,,4]),this._nextSequenceToken=void 0,this._dataTracker.eventUploadInProgress=!0,[4,this._getNextSequenceToken()];case 1:return t=i.sent(),e.sequenceToken=t,[4,this._sendLogEvents(e)];case 2:return n=i.sent(),this._dataTracker.eventUploadInProgress=!1,this._currentLogBatch=[],[2,n];case 3:throw r=i.sent(),fu.error("error when retrying log submission with new sequence token: "+r),this._dataTracker.eventUploadInProgress=!1,r;case 4:return[2]}})})},e.prototype._initiateLogPushInterval=function(){var e=this;this._timer&&clearInterval(this._timer),this._timer=setInterval(function(){return fi(e,void 0,void 0,function(){var e;return fo(this,function(t){switch(t.label){case 0:if(t.trys.push([0,3,,4]),!this._getDocUploadPermissibility())return[3,2];return[4,this._safeUploadLogEvents()];case 1:t.sent(),t.label=2;case 2:return[3,4];case 3:return e=t.sent(),fu.error("error when calling _safeUploadLogEvents in the timer interval - "+e),[3,4];case 4:return[2]}})})},2e3)},e.prototype._getDocUploadPermissibility=function(){return(0!==this._dataTracker.logEvents.length||0!==this._currentLogBatch.length)&&!this._dataTracker.eventUploadInProgress},e.PROVIDER_NAME=tJ,e.CATEGORY=tX,e}(),fl={},ff={addEventListener:function(e,t){}},fd=nF().isBrowser?new uR().getStorage():void 0,fp=function(){function e(){this._logger=new t3("ServiceWorker")}return Object.defineProperty(e.prototype,"serviceWorker",{get:function(){return this._serviceWorker},enumerable:!0,configurable:!0}),e.prototype.register=function(e,t){var n=this;return void 0===e&&(e="/service-worker.js"),void 0===t&&(t="/"),this._logger.debug("registering "+e),this._logger.debug("registering service worker with scope "+t),new Promise(function(r,i){if(!(navigator&&"serviceWorker"in navigator))return i(Error("Service Worker not available"));navigator.serviceWorker.register(e,{scope:t}).then(function(e){return e.installing?n._serviceWorker=e.installing:e.waiting?n._serviceWorker=e.waiting:e.active&&(n._serviceWorker=e.active),n._registration=e,n._setupListeners(),n._logger.debug("Service Worker Registration Success: "+e),r(e)}).catch(function(e){return n._logger.debug("Service Worker Registration Failed "+e),i(e)})})},e.prototype.enablePush=function(e){var t=this;if(!this._registration)throw Error("Service Worker not registered");return this._publicKey=e,new Promise(function(n,r){if(!nF().isBrowser)return r(Error("Service Worker not available"));t._registration.pushManager.getSubscription().then(function(r){if(!r)return t._logger.debug("User is NOT subscribed to push"),t._registration.pushManager.subscribe({userVisibleOnly:!0,applicationServerKey:t._urlB64ToUint8Array(e)}).then(function(e){t._subscription=e,t._logger.debug("User subscribed: "+JSON.stringify(e)),n(e)}).catch(function(e){t._logger.error(e)});t._subscription=r,t._logger.debug("User is subscribed to push: "+JSON.stringify(r)),n(r)})})},e.prototype._urlB64ToUint8Array=function(e){for(var t="=".repeat((4-e.length%4)%4),n=(e+t).replace(/\-/g,"+").replace(/_/g,"/"),r=window.atob(n),i=new Uint8Array(r.length),o=0;o=0&&this.changeListeners.splice(t,1)},e}(),fx=nF().isBrowser,f_=function(){function e(e){void 0===e&&(e={}),this.cookies=new fw,this.store=fx?window.localStorage:Object.create(null),this.cookies=e.req?new fw(e.req.headers.cookie):new fw,Object.assign(this.store,this.cookies.getAll())}return Object.defineProperty(e.prototype,"length",{get:function(){return Object.entries(this.store).length},enumerable:!0,configurable:!0}),e.prototype.clear=function(){var e=this;Array.from(Array(this.length)).map(function(t,n){return e.key(n)}).forEach(function(t){return e.removeItem(t)})},e.prototype.getItem=function(e){return this.getLocalItem(e)},e.prototype.getLocalItem=function(e){return Object.prototype.hasOwnProperty.call(this.store,e)?this.store[e]:null},e.prototype.getUniversalItem=function(e){return this.cookies.get(e)},e.prototype.key=function(e){return Object.keys(this.store)[e]},e.prototype.removeItem=function(e){this.removeLocalItem(e),this.removeUniversalItem(e)},e.prototype.removeLocalItem=function(e){delete this.store[e]},e.prototype.removeUniversalItem=function(e){this.cookies.remove(e,{path:"/"})},e.prototype.setItem=function(e,t){this.setLocalItem(e,t);var n=e.split(".").pop();switch(n){case"LastAuthUser":case"accessToken":case"refreshToken":case"idToken":fx?this.setUniversalItem(e,t):this.setLocalItem(e,t)}},e.prototype.setLocalItem=function(e,t){this.store[e]=t},e.prototype.setUniversalItem=function(e,t){this.cookies.set(e,t,{path:"/",sameSite:!0,secure:"localhost"!==window.location.hostname})},e}(),fS="undefined"!=typeof Symbol&&"function"==typeof Symbol.for,fC=fS?Symbol.for("INTERNAL_AWS_APPSYNC_PUBSUB_PROVIDER"):"@@INTERNAL_AWS_APPSYNC_PUBSUB_PROVIDER",fA=fS?Symbol.for("INTERNAL_AWS_APPSYNC_REALTIME_PUBSUB_PROVIDER"):"@@INTERNAL_AWS_APPSYNC_REALTIME_PUBSUB_PROVIDER",fD="x-amz-user-agent",fO=function(){function e(){this._queue=[],this._pending=!1}return e.prototype.isLocked=function(){return this._pending},e.prototype.acquire=function(){var e=this,t=new Promise(function(t){return e._queue.push(t)});return this._pending||this._dispatchNext(),t},e.prototype.runExclusive=function(e){return this.acquire().then(function(t){var n;try{n=e()}catch(r){throw t(),r}return Promise.resolve(n).then(function(e){return t(),e},function(e){throw t(),e})})},e.prototype._dispatchNext=function(){this._queue.length>0?(this._pending=!0,this._queue.shift()(this._dispatchNext.bind(this))):this._pending=!1},e}(),fk=n(49329),fT=n.n(fk)(),fN=function(e){var t="function"==typeof Symbol&&Symbol.iterator,n=t&&e[t],r=0;if(n)return n.call(e);if(e&&"number"==typeof e.length)return{next:function(){return e&&r>=e.length&&(e=void 0),{value:e&&e[r++],done:!e}}};throw TypeError(t?"Object is not iterable.":"Symbol.iterator is not defined.")},fP=function(){function e(){}return e.prototype.networkMonitor=function(t){if(nF().isNode)return fT.from([{online:!0}]);var n=nM()?self:window;return new fT(function(t){t.next({online:n.navigator.onLine});var r=function(){return t.next({online:!0})},i=function(){return t.next({online:!1})};return n.addEventListener("online",r),n.addEventListener("offline",i),e._observers.push(t),function(){n.removeEventListener("online",r),n.removeEventListener("offline",i),e._observers=e._observers.filter(function(e){return e!==t})}})},e._observerOverride=function(t){var n,r,i=function(n){if(n.closed)return e._observers=e._observers.filter(function(e){return e!==n}),"continue";n.next(t)};try{for(var o=fN(e._observers),a=o.next();!a.done;a=o.next()){var s=a.value;i(s)}}catch(u){n={error:u}}finally{try{a&&!a.done&&(r=o.return)&&r.call(o)}finally{if(n)throw n.error}}},e._observers=[],e}();function fI(e){return e.split("").map(function(e){return e.charCodeAt(0).toString(16).padStart(2,"0")}).join("")}function fM(e){return e.match(/.{2}/g).map(function(e){return String.fromCharCode(parseInt(e,16))}).join("")}var fF={userAgent:nt.userAgent},fR=t7},41774:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var r=n(91888),i=function(){function e(){this.state=Int32Array.from(r.INIT),this.temp=new Int32Array(64),this.buffer=new Uint8Array(64),this.bufferLength=0,this.bytesHashed=0,this.finished=!1}return e.prototype.update=function(e){if(this.finished)throw Error("Attempted to update an already finished hash.");var t=0,n=e.byteLength;if(this.bytesHashed+=n,8*this.bytesHashed>r.MAX_HASHABLE_LENGTH)throw Error("Cannot hash more than 2^53 - 1 bits");for(;n>0;)this.buffer[this.bufferLength++]=e[t++],n--,this.bufferLength===r.BLOCK_SIZE&&(this.hashBuffer(),this.bufferLength=0)},e.prototype.digest=function(){if(!this.finished){var e=8*this.bytesHashed,t=new DataView(this.buffer.buffer,this.buffer.byteOffset,this.buffer.byteLength),n=this.bufferLength;if(t.setUint8(this.bufferLength++,128),n%r.BLOCK_SIZE>=r.BLOCK_SIZE-8){for(var i=this.bufferLength;i>>24&255,o[4*i+1]=this.state[i]>>>16&255,o[4*i+2]=this.state[i]>>>8&255,o[4*i+3]=this.state[i]>>>0&255;return o},e.prototype.hashBuffer=function(){for(var e=this,t=e.buffer,n=e.state,i=n[0],o=n[1],a=n[2],s=n[3],u=n[4],c=n[5],l=n[6],f=n[7],d=0;d>>17|p<<15)^(p>>>19|p<<13)^p>>>10,m=((p=this.temp[d-15])>>>7|p<<25)^(p>>>18|p<<14)^p>>>3;this.temp[d]=(h+this.temp[d-7]|0)+(m+this.temp[d-16]|0)}var v=(((u>>>6|u<<26)^(u>>>11|u<<21)^(u>>>25|u<<7))+(u&c^~u&l)|0)+(f+(r.KEY[d]+this.temp[d]|0)|0)|0,g=((i>>>2|i<<30)^(i>>>13|i<<19)^(i>>>22|i<<10))+(i&o^i&a^o&a)|0;f=l,l=c,c=u,u=s+v|0,s=a,a=o,o=i,i=v+g|0}n[0]+=i,n[1]+=o,n[2]+=a,n[3]+=s,n[4]+=u,n[5]+=c,n[6]+=l,n[7]+=f},e}();t.RawSha256=i},91888:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.BLOCK_SIZE=64,t.DIGEST_LENGTH=32,t.KEY=new Uint32Array([1116352408,1899447441,3049323471,3921009573,961987163,1508970993,2453635748,2870763221,3624381080,310598401,607225278,1426881987,1925078388,2162078206,2614888103,3248222580,3835390401,4022224774,264347078,604807628,770255983,1249150122,1555081692,1996064986,2554220882,2821834349,2952996808,3210313671,3336571891,3584528711,113926993,338241895,666307205,773529912,1294757372,1396182291,1695183700,1986661051,2177026350,2456956037,2730485921,2820302411,3259730800,3345764771,3516065817,3600352804,4094571909,275423344,430227734,506948616,659060556,883997877,958139571,1322822218,1537002063,1747873779,1955562222,2024104815,2227730452,2361852424,2428436474,2756734187,3204031479,3329325298]),t.INIT=[1779033703,3144134277,1013904242,2773480762,1359893119,2600822924,528734635,1541459225],t.MAX_HASHABLE_LENGTH=9007199254740991},36051:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),n(70655).__exportStar(n(78036),t)},78036:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var r=n(70655),i=n(91888),o=n(41774),a=n(24172),s=function(){function e(e){if(this.hash=new o.RawSha256,e){this.outer=new o.RawSha256;var t=u(e),n=new Uint8Array(i.BLOCK_SIZE);n.set(t);for(var r=0;ri.BLOCK_SIZE){var n=new o.RawSha256;n.update(t),t=n.digest()}var r=new Uint8Array(i.BLOCK_SIZE);return r.set(t),r}function c(e){return"string"==typeof e?0===e.length:0===e.byteLength}function l(e){return"string"==typeof e?a.fromUtf8(e):ArrayBuffer.isView(e)?new Uint8Array(e.buffer,e.byteOffset,e.byteLength/Uint8Array.BYTES_PER_ELEMENT):new Uint8Array(e)}t.Sha256=s},24172:function(e,t,n){"use strict";n.r(t),n.d(t,{fromUtf8:function(){return s},toUtf8:function(){return u}});var r=function(e){for(var t=[],n=0,r=e.length;n>6|192,63&i|128);else if(n+1>18|240,o>>12&63|128,o>>6&63|128,63&o|128)}else t.push(i>>12|224,i>>6&63|128,63&i|128)}return Uint8Array.from(t)},i=function(e){for(var t="",n=0,r=e.length;nr.MAX_HASHABLE_LENGTH)throw Error("Cannot hash more than 2^53 - 1 bits");for(;n>0;)this.buffer[this.bufferLength++]=e[t++],n--,this.bufferLength===r.BLOCK_SIZE&&(this.hashBuffer(),this.bufferLength=0)},e.prototype.digest=function(){if(!this.finished){var e=8*this.bytesHashed,t=new DataView(this.buffer.buffer,this.buffer.byteOffset,this.buffer.byteLength),n=this.bufferLength;if(t.setUint8(this.bufferLength++,128),n%r.BLOCK_SIZE>=r.BLOCK_SIZE-8){for(var i=this.bufferLength;i>>24&255,o[4*i+1]=this.state[i]>>>16&255,o[4*i+2]=this.state[i]>>>8&255,o[4*i+3]=this.state[i]>>>0&255;return o},e.prototype.hashBuffer=function(){for(var e=this,t=e.buffer,n=e.state,i=n[0],o=n[1],a=n[2],s=n[3],u=n[4],c=n[5],l=n[6],f=n[7],d=0;d>>17|p<<15)^(p>>>19|p<<13)^p>>>10,m=((p=this.temp[d-15])>>>7|p<<25)^(p>>>18|p<<14)^p>>>3;this.temp[d]=(h+this.temp[d-7]|0)+(m+this.temp[d-16]|0)}var v=(((u>>>6|u<<26)^(u>>>11|u<<21)^(u>>>25|u<<7))+(u&c^~u&l)|0)+(f+(r.KEY[d]+this.temp[d]|0)|0)|0,g=((i>>>2|i<<30)^(i>>>13|i<<19)^(i>>>22|i<<10))+(i&o^i&a^o&a)|0;f=l,l=c,c=u,u=s+v|0,s=a,a=o,o=i,i=v+g|0}n[0]+=i,n[1]+=o,n[2]+=a,n[3]+=s,n[4]+=u,n[5]+=c,n[6]+=l,n[7]+=f},e}();t.RawSha256=i},89945:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.MAX_HASHABLE_LENGTH=t.INIT=t.KEY=t.DIGEST_LENGTH=t.BLOCK_SIZE=void 0,t.BLOCK_SIZE=64,t.DIGEST_LENGTH=32,t.KEY=new Uint32Array([1116352408,1899447441,3049323471,3921009573,961987163,1508970993,2453635748,2870763221,3624381080,310598401,607225278,1426881987,1925078388,2162078206,2614888103,3248222580,3835390401,4022224774,264347078,604807628,770255983,1249150122,1555081692,1996064986,2554220882,2821834349,2952996808,3210313671,3336571891,3584528711,113926993,338241895,666307205,773529912,1294757372,1396182291,1695183700,1986661051,2177026350,2456956037,2730485921,2820302411,3259730800,3345764771,3516065817,3600352804,4094571909,275423344,430227734,506948616,659060556,883997877,958139571,1322822218,1537002063,1747873779,1955562222,2024104815,2227730452,2361852424,2428436474,2756734187,3204031479,3329325298]),t.INIT=[1779033703,3144134277,1013904242,2773480762,1359893119,2600822924,528734635,1541459225],t.MAX_HASHABLE_LENGTH=9007199254740991},41938:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),(0,n(70655).__exportStar)(n(65430),t)},65430:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.Sha256=void 0;var r=n(70655),i=n(89945),o=n(10914),a=n(17658),s=function(){function e(e){if(this.hash=new o.RawSha256,e){this.outer=new o.RawSha256;var t=u(e),n=new Uint8Array(i.BLOCK_SIZE);n.set(t);for(var r=0;ri.BLOCK_SIZE){var n=new o.RawSha256;n.update(t),t=n.digest()}var r=new Uint8Array(i.BLOCK_SIZE);return r.set(t),r}t.Sha256=s},21:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),n(70655).__exportStar(n(97787),t)},97787:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.supportsZeroByteGCM=t.supportsSubtleCrypto=t.supportsSecureRandom=t.supportsWebCrypto=void 0;var r=n(70655),i=["decrypt","digest","encrypt","exportKey","generateKey","importKey","sign","verify"];function o(e){return!!a(e)&&"object"==typeof e.crypto.subtle&&s(e.crypto.subtle)}function a(e){return"object"==typeof e&&"object"==typeof e.crypto&&"function"==typeof e.crypto.getRandomValues}function s(e){return e&&i.every(function(t){return"function"==typeof e[t]})}function u(e){return r.__awaiter(this,void 0,void 0,function(){var t,n,i;return r.__generator(this,function(r){switch(r.label){case 0:if(!s(e))return[2,!1];r.label=1;case 1:return r.trys.push([1,4,,5]),[4,e.generateKey({name:"AES-GCM",length:128},!1,["encrypt"])];case 2:return t=r.sent(),[4,e.encrypt({name:"AES-GCM",iv:new Uint8Array(Array(12)),additionalData:new Uint8Array(Array(16)),tagLength:128},t,new Uint8Array(0))];case 3:return[2,16===(n=r.sent()).byteLength];case 4:return i=r.sent(),[2,!1];case 5:return[2]}})})}t.supportsWebCrypto=o,t.supportsSecureRandom=a,t.supportsSubtleCrypto=s,t.supportsZeroByteGCM=u},51106:function(e,t,n){"use strict";var r=n(48764).lW;Object.defineProperty(t,"__esModule",{value:!0}),t.convertToBuffer=void 0;var i=n(9355),o=void 0!==r&&r.from?function(e){return r.from(e,"utf8")}:i.fromUtf8;function a(e){return e instanceof Uint8Array?e:"string"==typeof e?o(e):ArrayBuffer.isView(e)?new Uint8Array(e.buffer,e.byteOffset,e.byteLength/Uint8Array.BYTES_PER_ELEMENT):new Uint8Array(e)}t.convertToBuffer=a},17658:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.uint32ArrayFrom=t.numToUint8=t.isEmptyData=t.convertToBuffer=void 0;var r=n(51106);Object.defineProperty(t,"convertToBuffer",{enumerable:!0,get:function(){return r.convertToBuffer}});var i=n(84304);Object.defineProperty(t,"isEmptyData",{enumerable:!0,get:function(){return i.isEmptyData}});var o=n(22174);Object.defineProperty(t,"numToUint8",{enumerable:!0,get:function(){return o.numToUint8}});var a=n(81558);Object.defineProperty(t,"uint32ArrayFrom",{enumerable:!0,get:function(){return a.uint32ArrayFrom}})},84304:function(e,t){"use strict";function n(e){return"string"==typeof e?0===e.length:0===e.byteLength}Object.defineProperty(t,"__esModule",{value:!0}),t.isEmptyData=void 0,t.isEmptyData=n},22174:function(e,t){"use strict";function n(e){return new Uint8Array([(4278190080&e)>>24,(16711680&e)>>16,(65280&e)>>8,255&e,])}Object.defineProperty(t,"__esModule",{value:!0}),t.numToUint8=void 0,t.numToUint8=n},81558:function(e,t){"use strict";function n(e){if(!Array.from){for(var t=new Uint32Array(e.length),n=0;n>6|192,63&i|128);else if(n+1>18|240,o>>12&63|128,o>>6&63|128,63&o|128)}else t.push(i>>12|224,i>>6&63|128,63&i|128)}return Uint8Array.from(t)},i=function(e){for(var t="",n=0,r=e.length;n>6|192,63&i|128);else if(n+1>18|240,o>>12&63|128,o>>6&63|128,63&o|128)}else t.push(i>>12|224,i>>6&63|128,63&i|128)}return Uint8Array.from(t)},i=function(e){for(var t="",n=0,r=e.length;n.5?c/(2-i-o):c/(i+o),i){case e:a=(t-n)/c+(t1&&(n-=1),n<1/6)?e+(t-e)*(6*n):n<.5?t:n<2/3?e+(t-e)*(2/3-n)*6:e}function s(e,t,n){if(e=(0,r.sh)(e,360),t=(0,r.sh)(t,100),n=(0,r.sh)(n,100),0===t)o=n,s=n,i=n;else{var i,o,s,u=n<.5?n*(1+t):n+t-n*t,c=2*n-u;i=a(c,u,e+1/3),o=a(c,u,e),s=a(c,u,e-1/3)}return{r:255*i,g:255*o,b:255*s}}function u(e,t,n){e=(0,r.sh)(e,255),t=(0,r.sh)(t,255),n=(0,r.sh)(n,255);var i=Math.max(e,t,n),o=Math.min(e,t,n),a=0,s=i,u=i-o,c=0===i?0:u/i;if(i===o)a=0;else{switch(i){case e:a=(t-n)/u+(t>16,g:(65280&e)>>8,b:255&e}}},48701:function(e,t,n){"use strict";n.d(t,{R:function(){return r}});var r={aliceblue:"#f0f8ff",antiquewhite:"#faebd7",aqua:"#00ffff",aquamarine:"#7fffd4",azure:"#f0ffff",beige:"#f5f5dc",bisque:"#ffe4c4",black:"#000000",blanchedalmond:"#ffebcd",blue:"#0000ff",blueviolet:"#8a2be2",brown:"#a52a2a",burlywood:"#deb887",cadetblue:"#5f9ea0",chartreuse:"#7fff00",chocolate:"#d2691e",coral:"#ff7f50",cornflowerblue:"#6495ed",cornsilk:"#fff8dc",crimson:"#dc143c",cyan:"#00ffff",darkblue:"#00008b",darkcyan:"#008b8b",darkgoldenrod:"#b8860b",darkgray:"#a9a9a9",darkgreen:"#006400",darkgrey:"#a9a9a9",darkkhaki:"#bdb76b",darkmagenta:"#8b008b",darkolivegreen:"#556b2f",darkorange:"#ff8c00",darkorchid:"#9932cc",darkred:"#8b0000",darksalmon:"#e9967a",darkseagreen:"#8fbc8f",darkslateblue:"#483d8b",darkslategray:"#2f4f4f",darkslategrey:"#2f4f4f",darkturquoise:"#00ced1",darkviolet:"#9400d3",deeppink:"#ff1493",deepskyblue:"#00bfff",dimgray:"#696969",dimgrey:"#696969",dodgerblue:"#1e90ff",firebrick:"#b22222",floralwhite:"#fffaf0",forestgreen:"#228b22",fuchsia:"#ff00ff",gainsboro:"#dcdcdc",ghostwhite:"#f8f8ff",goldenrod:"#daa520",gold:"#ffd700",gray:"#808080",green:"#008000",greenyellow:"#adff2f",grey:"#808080",honeydew:"#f0fff0",hotpink:"#ff69b4",indianred:"#cd5c5c",indigo:"#4b0082",ivory:"#fffff0",khaki:"#f0e68c",lavenderblush:"#fff0f5",lavender:"#e6e6fa",lawngreen:"#7cfc00",lemonchiffon:"#fffacd",lightblue:"#add8e6",lightcoral:"#f08080",lightcyan:"#e0ffff",lightgoldenrodyellow:"#fafad2",lightgray:"#d3d3d3",lightgreen:"#90ee90",lightgrey:"#d3d3d3",lightpink:"#ffb6c1",lightsalmon:"#ffa07a",lightseagreen:"#20b2aa",lightskyblue:"#87cefa",lightslategray:"#778899",lightslategrey:"#778899",lightsteelblue:"#b0c4de",lightyellow:"#ffffe0",lime:"#00ff00",limegreen:"#32cd32",linen:"#faf0e6",magenta:"#ff00ff",maroon:"#800000",mediumaquamarine:"#66cdaa",mediumblue:"#0000cd",mediumorchid:"#ba55d3",mediumpurple:"#9370db",mediumseagreen:"#3cb371",mediumslateblue:"#7b68ee",mediumspringgreen:"#00fa9a",mediumturquoise:"#48d1cc",mediumvioletred:"#c71585",midnightblue:"#191970",mintcream:"#f5fffa",mistyrose:"#ffe4e1",moccasin:"#ffe4b5",navajowhite:"#ffdead",navy:"#000080",oldlace:"#fdf5e6",olive:"#808000",olivedrab:"#6b8e23",orange:"#ffa500",orangered:"#ff4500",orchid:"#da70d6",palegoldenrod:"#eee8aa",palegreen:"#98fb98",paleturquoise:"#afeeee",palevioletred:"#db7093",papayawhip:"#ffefd5",peachpuff:"#ffdab9",peru:"#cd853f",pink:"#ffc0cb",plum:"#dda0dd",powderblue:"#b0e0e6",purple:"#800080",rebeccapurple:"#663399",red:"#ff0000",rosybrown:"#bc8f8f",royalblue:"#4169e1",saddlebrown:"#8b4513",salmon:"#fa8072",sandybrown:"#f4a460",seagreen:"#2e8b57",seashell:"#fff5ee",sienna:"#a0522d",silver:"#c0c0c0",skyblue:"#87ceeb",slateblue:"#6a5acd",slategray:"#708090",slategrey:"#708090",snow:"#fffafa",springgreen:"#00ff7f",steelblue:"#4682b4",tan:"#d2b48c",teal:"#008080",thistle:"#d8bfd8",tomato:"#ff6347",turquoise:"#40e0d0",violet:"#ee82ee",wheat:"#f5deb3",white:"#ffffff",whitesmoke:"#f5f5f5",yellow:"#ffff00",yellowgreen:"#9acd32"}},1350:function(e,t,n){"use strict";n.d(t,{ky:function(){return d},uA:function(){return a},uz:function(){return f}});var r=n(86500),i=n(48701),o=n(90279);function a(e){var t={r:0,g:0,b:0},n=1,i=null,a=null,s=null,u=!1,c=!1;return"string"==typeof e&&(e=f(e)),"object"==typeof e&&(d(e.r)&&d(e.g)&&d(e.b)?(t=(0,r.rW)(e.r,e.g,e.b),u=!0,c="%"===String(e.r).substr(-1)?"prgb":"rgb"):d(e.h)&&d(e.s)&&d(e.v)?(i=(0,o.JX)(e.s),a=(0,o.JX)(e.v),t=(0,r.WE)(e.h,i,a),u=!0,c="hsv"):d(e.h)&&d(e.s)&&d(e.l)&&(i=(0,o.JX)(e.s),s=(0,o.JX)(e.l),t=(0,r.ve)(e.h,i,s),u=!0,c="hsl"),Object.prototype.hasOwnProperty.call(e,"a")&&(n=e.a)),n=(0,o.Yq)(n),{ok:u,format:e.format||c,r:Math.min(255,Math.max(t.r,0)),g:Math.min(255,Math.max(t.g,0)),b:Math.min(255,Math.max(t.b,0)),a:n}}var s="(?:[-\\+]?\\d*\\.\\d+%?)|(?:[-\\+]?\\d+%?)",u="[\\s|\\(]+("+s+")[,|\\s]+("+s+")[,|\\s]+("+s+")\\s*\\)?",c="[\\s|\\(]+("+s+")[,|\\s]+("+s+")[,|\\s]+("+s+")[,|\\s]+("+s+")\\s*\\)?",l={CSS_UNIT:RegExp(s),rgb:RegExp("rgb"+u),rgba:RegExp("rgba"+c),hsl:RegExp("hsl"+u),hsla:RegExp("hsla"+c),hsv:RegExp("hsv"+u),hsva:RegExp("hsva"+c),hex3:/^#?([0-9a-fA-F]{1})([0-9a-fA-F]{1})([0-9a-fA-F]{1})$/,hex6:/^#?([0-9a-fA-F]{2})([0-9a-fA-F]{2})([0-9a-fA-F]{2})$/,hex4:/^#?([0-9a-fA-F]{1})([0-9a-fA-F]{1})([0-9a-fA-F]{1})([0-9a-fA-F]{1})$/,hex8:/^#?([0-9a-fA-F]{2})([0-9a-fA-F]{2})([0-9a-fA-F]{2})([0-9a-fA-F]{2})$/};function f(e){if(0===(e=e.trim().toLowerCase()).length)return!1;var t=!1;if(i.R[e])e=i.R[e],t=!0;else if("transparent"===e)return{r:0,g:0,b:0,a:0,format:"name"};var n=l.rgb.exec(e);return n?{r:n[1],g:n[2],b:n[3]}:(n=l.rgba.exec(e))?{r:n[1],g:n[2],b:n[3],a:n[4]}:(n=l.hsl.exec(e))?{h:n[1],s:n[2],l:n[3]}:(n=l.hsla.exec(e))?{h:n[1],s:n[2],l:n[3],a:n[4]}:(n=l.hsv.exec(e))?{h:n[1],s:n[2],v:n[3]}:(n=l.hsva.exec(e))?{h:n[1],s:n[2],v:n[3],a:n[4]}:(n=l.hex8.exec(e))?{r:(0,r.VD)(n[1]),g:(0,r.VD)(n[2]),b:(0,r.VD)(n[3]),a:(0,r.T6)(n[4]),format:t?"name":"hex8"}:(n=l.hex6.exec(e))?{r:(0,r.VD)(n[1]),g:(0,r.VD)(n[2]),b:(0,r.VD)(n[3]),format:t?"name":"hex"}:(n=l.hex4.exec(e))?{r:(0,r.VD)(n[1]+n[1]),g:(0,r.VD)(n[2]+n[2]),b:(0,r.VD)(n[3]+n[3]),a:(0,r.T6)(n[4]+n[4]),format:t?"name":"hex8"}:!!(n=l.hex3.exec(e))&&{r:(0,r.VD)(n[1]+n[1]),g:(0,r.VD)(n[2]+n[2]),b:(0,r.VD)(n[3]+n[3]),format:t?"name":"hex"}}function d(e){return Boolean(l.CSS_UNIT.exec(String(e)))}},4699:function(e,t,n){"use strict";n.r(t),n.d(t,{TinyColor:function(){return s},bounds:function(){return S},convertDecimalToHex:function(){return r.Wl},convertHexToDecimal:function(){return r.T6},default:function(){return C},fromRatio:function(){return p},hslToRgb:function(){return r.ve},hsvToRgb:function(){return r.WE},inputToRGB:function(){return o.uA},isReadable:function(){return l},isValidCSSUnit:function(){return o.ky},legacyRandom:function(){return h},mostReadable:function(){return f},names:function(){return i.R},numberInputToObject:function(){return r.Yt},parseIntFromHex:function(){return r.VD},random:function(){return m},readability:function(){return c},rgbToHex:function(){return r.vq},rgbToHsl:function(){return r.lC},rgbToHsv:function(){return r.py},rgbToRgb:function(){return r.rW},rgbaToArgbHex:function(){return r.GC},rgbaToHex:function(){return r.s},stringInputToObject:function(){return o.uz},tinycolor:function(){return u},toMsFilter:function(){return d}});var r=n(86500),i=n(48701),o=n(1350),a=n(90279),s=function(){function e(t,n){if(void 0===t&&(t=""),void 0===n&&(n={}),t instanceof e)return t;"number"==typeof t&&(t=(0,r.Yt)(t)),this.originalInput=t;var i,a=(0,o.uA)(t);this.originalInput=t,this.r=a.r,this.g=a.g,this.b=a.b,this.a=a.a,this.roundA=Math.round(100*this.a)/100,this.format=null!==(i=n.format)&&void 0!==i?i:a.format,this.gradientType=n.gradientType,this.r<1&&(this.r=Math.round(this.r)),this.g<1&&(this.g=Math.round(this.g)),this.b<1&&(this.b=Math.round(this.b)),this.isValid=a.ok}return e.prototype.isDark=function(){return 128>this.getBrightness()},e.prototype.isLight=function(){return!this.isDark()},e.prototype.getBrightness=function(){var e=this.toRgb();return(299*e.r+587*e.g+114*e.b)/1e3},e.prototype.getLuminance=function(){var e,t,n=this.toRgb(),r=n.r/255,i=n.g/255,o=n.b/255;return e=r<=.03928?r/12.92:Math.pow((r+.055)/1.055,2.4),.2126*e+.7152*(t=i<=.03928?i/12.92:Math.pow((i+.055)/1.055,2.4))+.0722*(o<=.03928?o/12.92:Math.pow((o+.055)/1.055,2.4))},e.prototype.getAlpha=function(){return this.a},e.prototype.setAlpha=function(e){return this.a=(0,a.Yq)(e),this.roundA=Math.round(100*this.a)/100,this},e.prototype.toHsv=function(){var e=(0,r.py)(this.r,this.g,this.b);return{h:360*e.h,s:e.s,v:e.v,a:this.a}},e.prototype.toHsvString=function(){var e=(0,r.py)(this.r,this.g,this.b),t=Math.round(360*e.h),n=Math.round(100*e.s),i=Math.round(100*e.v);return 1===this.a?"hsv("+t+", "+n+"%, "+i+"%)":"hsva("+t+", "+n+"%, "+i+"%, "+this.roundA+")"},e.prototype.toHsl=function(){var e=(0,r.lC)(this.r,this.g,this.b);return{h:360*e.h,s:e.s,l:e.l,a:this.a}},e.prototype.toHslString=function(){var e=(0,r.lC)(this.r,this.g,this.b),t=Math.round(360*e.h),n=Math.round(100*e.s),i=Math.round(100*e.l);return 1===this.a?"hsl("+t+", "+n+"%, "+i+"%)":"hsla("+t+", "+n+"%, "+i+"%, "+this.roundA+")"},e.prototype.toHex=function(e){return void 0===e&&(e=!1),(0,r.vq)(this.r,this.g,this.b,e)},e.prototype.toHexString=function(e){return void 0===e&&(e=!1),"#"+this.toHex(e)},e.prototype.toHex8=function(e){return void 0===e&&(e=!1),(0,r.s)(this.r,this.g,this.b,this.a,e)},e.prototype.toHex8String=function(e){return void 0===e&&(e=!1),"#"+this.toHex8(e)},e.prototype.toRgb=function(){return{r:Math.round(this.r),g:Math.round(this.g),b:Math.round(this.b),a:this.a}},e.prototype.toRgbString=function(){var e=Math.round(this.r),t=Math.round(this.g),n=Math.round(this.b);return 1===this.a?"rgb("+e+", "+t+", "+n+")":"rgba("+e+", "+t+", "+n+", "+this.roundA+")"},e.prototype.toPercentageRgb=function(){var e=function(e){return Math.round(100*(0,a.sh)(e,255))+"%"};return{r:e(this.r),g:e(this.g),b:e(this.b),a:this.a}},e.prototype.toPercentageRgbString=function(){var e=function(e){return Math.round(100*(0,a.sh)(e,255))};return 1===this.a?"rgb("+e(this.r)+"%, "+e(this.g)+"%, "+e(this.b)+"%)":"rgba("+e(this.r)+"%, "+e(this.g)+"%, "+e(this.b)+"%, "+this.roundA+")"},e.prototype.toName=function(){if(0===this.a)return"transparent";if(this.a<1)return!1;for(var e="#"+(0,r.vq)(this.r,this.g,this.b,!1),t=0,n=Object.entries(i.R);t=0;return!t&&r&&(e.startsWith("hex")||"name"===e)?"name"===e&&0===this.a?this.toName():this.toRgbString():("rgb"===e&&(n=this.toRgbString()),"prgb"===e&&(n=this.toPercentageRgbString()),("hex"===e||"hex6"===e)&&(n=this.toHexString()),"hex3"===e&&(n=this.toHexString(!0)),"hex4"===e&&(n=this.toHex8String(!0)),"hex8"===e&&(n=this.toHex8String()),"name"===e&&(n=this.toName()),"hsl"===e&&(n=this.toHslString()),"hsv"===e&&(n=this.toHsvString()),n||this.toHexString())},e.prototype.toNumber=function(){return(Math.round(this.r)<<16)+(Math.round(this.g)<<8)+Math.round(this.b)},e.prototype.clone=function(){return new e(this.toString())},e.prototype.lighten=function(t){void 0===t&&(t=10);var n=this.toHsl();return n.l+=t/100,n.l=(0,a.V2)(n.l),new e(n)},e.prototype.brighten=function(t){void 0===t&&(t=10);var n=this.toRgb();return n.r=Math.max(0,Math.min(255,n.r-Math.round(-(255*(t/100))))),n.g=Math.max(0,Math.min(255,n.g-Math.round(-(255*(t/100))))),n.b=Math.max(0,Math.min(255,n.b-Math.round(-(255*(t/100))))),new e(n)},e.prototype.darken=function(t){void 0===t&&(t=10);var n=this.toHsl();return n.l-=t/100,n.l=(0,a.V2)(n.l),new e(n)},e.prototype.tint=function(e){return void 0===e&&(e=10),this.mix("white",e)},e.prototype.shade=function(e){return void 0===e&&(e=10),this.mix("black",e)},e.prototype.desaturate=function(t){void 0===t&&(t=10);var n=this.toHsl();return n.s-=t/100,n.s=(0,a.V2)(n.s),new e(n)},e.prototype.saturate=function(t){void 0===t&&(t=10);var n=this.toHsl();return n.s+=t/100,n.s=(0,a.V2)(n.s),new e(n)},e.prototype.greyscale=function(){return this.desaturate(100)},e.prototype.spin=function(t){var n=this.toHsl(),r=(n.h+t)%360;return n.h=r<0?360+r:r,new e(n)},e.prototype.mix=function(t,n){void 0===n&&(n=50);var r=this.toRgb(),i=new e(t).toRgb(),o=n/100,a={r:(i.r-r.r)*o+r.r,g:(i.g-r.g)*o+r.g,b:(i.b-r.b)*o+r.b,a:(i.a-r.a)*o+r.a};return new e(a)},e.prototype.analogous=function(t,n){void 0===t&&(t=6),void 0===n&&(n=30);var r=this.toHsl(),i=360/n,o=[this];for(r.h=(r.h-(i*t>>1)+720)%360;--t;)r.h=(r.h+i)%360,o.push(new e(r));return o},e.prototype.complement=function(){var t=this.toHsl();return t.h=(t.h+180)%360,new e(t)},e.prototype.monochromatic=function(t){void 0===t&&(t=6);for(var n=this.toHsv(),r=n.h,i=n.s,o=n.v,a=[],s=1/t;t--;)a.push(new e({h:r,s:i,v:o})),o=(o+s)%1;return a},e.prototype.splitcomplement=function(){var t=this.toHsl(),n=t.h;return[this,new e({h:(n+72)%360,s:t.s,l:t.l}),new e({h:(n+216)%360,s:t.s,l:t.l}),]},e.prototype.onBackground=function(t){var n=this.toRgb(),r=new e(t).toRgb();return new e({r:r.r+(n.r-r.r)*n.a,g:r.g+(n.g-r.g)*n.a,b:r.b+(n.b-r.b)*n.a})},e.prototype.triad=function(){return this.polyad(3)},e.prototype.tetrad=function(){return this.polyad(4)},e.prototype.polyad=function(t){for(var n=this.toHsl(),r=n.h,i=[this],o=360/t,a=1;a=4.5;case"AAlarge":return o>=3;case"AAAsmall":return o>=7;default:return!1}}function f(e,t,n){void 0===n&&(n={includeFallbackColors:!1,level:"AA",size:"small"});for(var r=null,i=0,o=n.includeFallbackColors,a=n.level,u=n.size,d=0,p=t;di&&(i=m,r=new s(h))}return l(e,r,{level:a,size:u})||!o?r:(n.includeFallbackColors=!1,f(e,["#fff","#000"],n))}function d(e,t){var n=new s(e),i="#"+(0,r.GC)(n.r,n.g,n.b,n.a),o=i,a=n.gradientType?"GradientType = 1, ":"";if(t){var u=new s(t);o="#"+(0,r.GC)(u.r,u.g,u.b,u.a)}return"progid:DXImageTransform.Microsoft.gradient("+a+"startColorstr="+i+",endColorstr="+o+")"}function p(e,t){var n={r:(0,a.JX)(e.r),g:(0,a.JX)(e.g),b:(0,a.JX)(e.b)};return void 0!==e.a&&(n.a=Number(e.a)),new s(n,t)}function h(){return new s({r:Math.random(),g:Math.random(),b:Math.random()})}function m(e){if(void 0===e&&(e={}),void 0!==e.count&&null!==e.count){var t=e.count,n=[];for(e.count=void 0;t>n.length;)e.count=null,e.seed&&(e.seed+=1),n.push(m(e));return e.count=t,n}var r=v(e.hue,e.seed),i=g(r,e),o=y(r,i,e),a={h:r,s:i,v:o};return void 0!==e.alpha&&(a.a=e.alpha),new s(a)}function v(e,t){var n=E(e),r=x(n,t);return r<0&&(r=360+r),r}function g(e,t){if("monochrome"===t.hue)return 0;if("random"===t.luminosity)return x([0,100],t.seed);var n=w(e).saturationRange,r=n[0],i=n[1];switch(t.luminosity){case"bright":r=55;break;case"dark":r=i-10;break;case"light":i=55}return x([r,i],t.seed)}function y(e,t,n){var r=b(e,t),i=100;switch(n.luminosity){case"dark":i=r+20;break;case"light":r=(i+r)/2;break;case"random":r=0,i=100}return x([r,i],n.seed)}function b(e,t){for(var n=w(e).lowerBounds,r=0;r=i&&t<=a){var u=(s-o)/(a-i),c=o-u*i;return u*t+c}}return 0}function E(e){var t=parseInt(e,10);if(!Number.isNaN(t)&&t<360&&t>0)return[t,t];if("string"==typeof e){var n=S.find(function(t){return t.name===e});if(n){var r=_(n);if(r.hueRange)return r.hueRange}var i=new s(e);if(i.isValid){var o=i.toHsv().h;return[o,o]}}return[0,360]}function w(e){e>=334&&e<=360&&(e-=360);for(var t=0,n=S;t=r.hueRange[0]&&e<=r.hueRange[1])return r}throw Error("Color not found")}function x(e,t){if(void 0===t)return Math.floor(e[0]+Math.random()*(e[1]+1-e[0]));var n=e[1]||1,r=e[0]||0;return Math.floor(r+(t=(9301*t+49297)%233280)/233280*(n-r))}function _(e){var t=e.lowerBounds[0][0],n=e.lowerBounds[e.lowerBounds.length-1][0],r=e.lowerBounds[e.lowerBounds.length-1][1],i=e.lowerBounds[0][1];return{name:e.name,hueRange:e.hueRange,lowerBounds:e.lowerBounds,saturationRange:[t,n],brightnessRange:[r,i]}}var S=[{name:"monochrome",hueRange:null,lowerBounds:[[0,0],[100,0],]},{name:"red",hueRange:[-26,18],lowerBounds:[[20,100],[30,92],[40,89],[50,85],[60,78],[70,70],[80,60],[90,55],[100,50],]},{name:"orange",hueRange:[19,46],lowerBounds:[[20,100],[30,93],[40,88],[50,86],[60,85],[70,70],[100,70],]},{name:"yellow",hueRange:[47,62],lowerBounds:[[25,100],[40,94],[50,89],[60,86],[70,84],[80,82],[90,80],[100,75],]},{name:"green",hueRange:[63,178],lowerBounds:[[30,100],[40,90],[50,85],[60,81],[70,74],[80,64],[90,50],[100,40],]},{name:"blue",hueRange:[179,257],lowerBounds:[[20,100],[30,86],[40,80],[50,74],[60,60],[70,52],[80,44],[90,39],[100,35],]},{name:"purple",hueRange:[258,282],lowerBounds:[[20,100],[30,87],[40,79],[50,70],[60,65],[70,59],[80,52],[90,45],[100,42],]},{name:"pink",hueRange:[283,334],lowerBounds:[[20,100],[30,90],[40,86],[60,84],[80,80],[90,75],[100,73],]},],C=u},90279:function(e,t,n){"use strict";function r(e,t){o(e)&&(e="100%");var n=a(e);return(e=360===t?e:Math.min(t,Math.max(0,parseFloat(e))),n&&(e=parseInt(String(e*t),10)/100),1e-6>Math.abs(e-t))?1:e=360===t?(e<0?e%t+t:e%t)/parseFloat(String(t)):e%t/parseFloat(String(t))}function i(e){return Math.min(1,Math.max(0,e))}function o(e){return"string"==typeof e&&-1!==e.indexOf(".")&&1===parseFloat(e)}function a(e){return"string"==typeof e&&-1!==e.indexOf("%")}function s(e){return e=parseFloat(e),(isNaN(e)||e<0||e>1)&&(e=1),e}function u(e){return e<=1?100*Number(e)+"%":e}function c(e){return 1===e.length?"0"+e:String(e)}n.d(t,{FZ:function(){return c},JX:function(){return u},V2:function(){return i},Yq:function(){return s},sh:function(){return r}})},10081:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.BacklinkUtils=void 0;let i=r(n(96486)),o=n(27626);class a{static createFromDLink(e){var t;let n=null===(t=e.to)||void 0===t?void 0:t.fname;if(n)return{from:e.from,type:"backlink",position:e.position,value:e.value}}static addBacklinkInPlace({note:e,backlink:t}){e.links.some(e=>o.DLinkUtils.isEquivalent(t,e))||e.links.push(t)}static removeBacklinkInPlace({note:e,backlink:t}){let n=e.links.filter(e=>!i.default.isEqual(t,e));e.links=n}}t.BacklinkUtils=a},27626:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.DLinkUtils=void 0;let i=r(n(96486));class o{static isEquivalent(e,t){return e.type===t.type&&this.isDLocEquivalent(e.from,t.from)&&this.isDLocEquivalent(e.to,t.to)&&e.value===t.value&&this.isPositionEquivalent(e.position,t.position)}static isDLocEquivalent(e,t){return!e&&!t||!!e&&!!t&&e.fname===t.fname&&e.id===t.id&&e.vaultName===t.vaultName}static isPositionEquivalent(e,t){return!e&&!t||!!e&&!!t&&e.start.line===t.start.line&&e.start.column===t.start.column&&e.end.line===t.end.line&&e.end.column===t.end.column&&i.default.isEqual(e.indent,t.indent)}}t.DLinkUtils=o},19046:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.ConsoleLogger=void 0;class n{debug(e){console.log(`DEBUG: ${e}`)}info(e){console.log(`INFO: ${e}`)}error(e){console.log(`ERROR: ${e}`)}}t.ConsoleLogger=n},498:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.FuseEngine=t.getCleanThresholdValue=t.createSerializedFuseNoteIndex=t.createFuseNote=t.FuseExtendedSearchConstants=void 0;let i=r(n(74221)),o=r(n(96486)),a=n(25903),s=n(91444);function u(e,t,n){let r={shouldSort:!0,threshold:t.threshold,distance:15,minMatchCharLength:1,keys:["fname"],useExtendedSearch:!0,includeScore:!0,location:0,ignoreLocation:!0,ignoreFieldNorm:!0,...t};"schema"===t.preset&&(r.keys=["fname","id"]);let o=new i.default(e,r,n);return o}function c(e,t,n){let r;return u(r=o.default.isArray(e)?e:Object.values(e),{preset:"note",keys:["title","body"],includeMatches:!0,includeScore:!0,findAllMatches:!0,useExtendedSearch:!0,...t},n)}function l(e,t){return c(e,t).getIndex().toJSON()}t.FuseExtendedSearchConstants={PrefixExactMatch:"^"},t.createFuseNote=c,t.createSerializedFuseNoteIndex=l;let f=e=>e<0||e>1?a.ConfigUtils.getLookup(a.ConfigUtils.genDefaultConfig()).note.fuzzThreshold:e;t.getCleanThresholdValue=f;class d{constructor(e){this.threshold="exact"===e.mode?0:(0,t.getCleanThresholdValue)(e.fuzzThreshold),this.notesIndex=u([],{preset:"note",threshold:this.threshold}),this.schemaIndex=u([],{preset:"schema",threshold:this.threshold})}querySchema({qs:e}){let t;if(""===e){let n=this.schemaIndex.search("root");t=[n[0].item]}else if("*"===e)t=this.schemaIndex._docs;else{let r=this.schemaIndex.search(d.formatQueryForFuse({qs:e}));r=this.filterByThreshold(r),t=o.default.map(r,e=>e.item)}return t}queryNote({qs:e,onlyDirectChildren:t,originalQS:n}){let r;if(""===e){let i=this.notesIndex.search("root");r=o.default.map(o.default.filter(i,e=>"root"===e.item.fname),e=>e.item)}else if("*"===e)r=this.notesIndex._docs;else{let a=d.formatQueryForFuse({qs:e}),s=this.notesIndex.search(a);s=this.postQueryFilter({results:s,queryString:a,onlyDirectChildren:t}),void 0===n&&(n=e),s=d.sortResults({results:s,originalQS:n}),r=o.default.map(s,e=>e.item)}return r}filterByThreshold(e){return e.filter(e=>e.score<=this.threshold)}async replaceSchemaIndex(e){this.schemaIndex.setCollection(o.default.map(o.default.values(e),e=>a.SchemaUtils.getModuleRoot(e)))}async replaceNotesIndex(e){this.notesIndex.setCollection(o.default.map(e,({fname:e,title:t,id:n,vault:r,updated:i,stub:o},a)=>({fname:e,id:n,title:t,vault:r,updated:i,stub:o})))}async updateNotesIndex(e){return Promise.all(e.map(async e=>{switch(e.status){case"create":return this.addNoteToIndex(e.note);case"delete":return this.removeNoteFromIndex(e.note);case"update":await this.removeNoteFromIndex(e.prevNote),await this.addNoteToIndex(e.note)}}))}async removeNoteFromIndex(e){this.notesIndex.remove(t=>!!t&&t.id===e.id)}async addNoteToIndex(e){let t=o.default.pick(e,["fname","id","title","vault","updated","stub",]);this.notesIndex.add(t)}async addSchemaToIndex(e){this.schemaIndex.add(a.SchemaUtils.getModuleRoot(e))}async removeSchemaFromIndex(e){this.schemaIndex.remove(t=>!!t&&t.id===a.SchemaUtils.getModuleRoot(e).id)}static formatQueryForFuse({qs:e}){return e.split("*").join(" ")}static sortResults({results:e,originalQS:t}){if(0===e.length)return[];let n=[{orderBy:e=>e.score,order:"asc"},{orderBy:e=>e.item.stub,order:"desc"},{orderBy:e=>e.levenshteinDist,order:"asc"},{orderBy:e=>e.item.updated,order:"desc"},],r=o.default.orderBy(e.map(e=>({...e,levenshteinDist:(0,s.levenshteinDistance)(e.item.fname,t)})),n.map(e=>e.orderBy),n.map(e=>e.order));if(t){let i=r.findIndex(e=>e.item.fname===t);if(-1!==i){let[a]=r.splice(i,1);r.unshift(a)}}return r}postQueryFilter({results:e,queryString:t,onlyDirectChildren:n}){if(e=this.filterByThreshold(e),!d.doesContainSpecialQueryChars(t)){let r=t.toLowerCase();e=e.filter(e=>e.item.fname.length>t.length||e.item.fname.toLowerCase()===r)}if(n){let i=t.split(".").length;e=e.filter(e=>a.DNodeUtils.getFNameDepth(e.item.fname)===i).filter(e=>!e.item.stub)}return e}static doesContainSpecialQueryChars(e){return this.SPECIAL_QUERY_CHARACTERS.some(t=>e.includes(t))}}t.FuseEngine=d,d.SPECIAL_QUERY_CHARACTERS=["*"," ","|","^","$","!","=","'",]},45115:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.LabelUtils=void 0;let r=n(99490);class i{static createLabelWithHighlight(e){let{value:t,highlight:n}=e,i="",o="",a=r.DateTime.fromJSDate(n.expirationDate).diffNow().as("milliseconds")>0;a&&("prefix"===n.location&&(i=`${n.value} `),"suffix"===n.location&&(o=` ${n.value}`));let s=`${i}${t}${o}`;return s}}t.LabelUtils=i},40822:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.StatisticsUtils=void 0;let i=r(n(96486)),o=n(25903);class a{static isNonEmptyArray(e){return e.length>0}static getBasicStats(e){return{mean:i.default.mean(e),median:a.median(e),stddev:a.stddev(e),max:i.default.max(e)}}static stddev(e){let t=e.length,n=i.default.mean(e),r=e.map(e=>e-n),o=r.map(e=>e**2),a=i.default.sum(o)/t;return Math.sqrt(a)}static median(e){let t=e.length,n=Math.floor(t/2),r=[...e].sort((e,t)=>e-t);return t%2?r[n]:(r[n]+r[n-1])/2}static getBasicStatsFromNotes(e){let t=e.map(e=>e.children.length),n=e.map(e=>e.links.length),r=e.map(e=>e.body.length),i=e.map(e=>o.DNodeUtils.getDepth(e));if(!a.isNonEmptyArray(t)||!a.isNonEmptyArray(n)||!a.isNonEmptyArray(r)||!a.isNonEmptyArray(i))return;let{mean:s,median:u,stddev:c,max:l}=a.getBasicStats(t),{mean:f,median:d,stddev:p,max:h}=a.getBasicStats(n),{mean:m,median:v,stddev:g,max:y}=a.getBasicStats(r),{mean:b,median:E,stddev:w,max:x}=a.getBasicStats(i);return{numChildren:s,numLinks:f,numChars:m,noteDepth:b,maxNumChildren:l,medianNumChildren:u,stddevNumChildren:c,maxNumLinks:h,medianNumLinks:d,stddevNumLinks:p,maxNumChars:y,medianNumChars:v,stddevNumChars:g,maxNoteDepth:x,medianNoteDepth:E,stddevNoteDepth:w}}}t.StatisticsUtils=a},89472:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.VaultUtilsV2=void 0;let i=r(n(96486)),o=n(17373),a=n(67949),s=n(49500);class u{static getRelPathFragments(e){return s.VaultUtils.isSelfContained(e)?[e.fsPath,a.FOLDERS.NOTES]:e.workspace?[e.workspace,e.fsPath]:e.seed?["seeds",e.seed,e.fsPath]:e.fsPath}static getVaultByFilePath({wsRoot:e,vaults:t,fsPath:n}){return i.default.find(t,t=>{let r=o.Utils.joinPath(e,...u.getRelPathFragments(t)).fsPath;return n.fsPath.startsWith(r)})}}t.VaultUtilsV2=u},35108:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.ABTest=void 0;let i=r(n(96486)),o=r(n(8322)),a=n(8115),s=4294967295;class u{constructor(e,t){if(this._name=e,t.length<2)throw new a.DendronServerError({message:"An A/B test is created with less than 2 groups. Each test must have at least 2."});let n=i.default.sumBy(t,e=>e.weight);this.groups=t.map(e=>({...e,weight:e.weight/n}))}get name(){return this._name}getUserGroup(e){let t=o.default.hash(`${this._name}:${e}`),n=parseInt(`0x${t.slice(0,8)}`,16),r=n/s,i=0;for(let a of this.groups)if(r<=(i+=a.weight))return a.name;return this.groups[this.groups.length-1].name}}t.ABTest=u},47671:function(e,t,n){"use strict";var r,i,o,a;Object.defineProperty(t,"__esModule",{value:!0}),t.CURRENT_AB_TESTS=t.CURRENT_TUTORIAL_TEST=t.MAIN_TUTORIAL_TYPE_NAME=t.QuickstartTutorialTestGroups=t.GRAPH_THEME_TEST=t.GraphThemeTestGroups=t.isABTest=void 0;let s=n(35108);n(30734);let u=e=>e instanceof s.ABTest;t.isABTest=u,(o=r=t.GraphThemeTestGroups||(t.GraphThemeTestGroups={})).monokai="Monokai",o.classic="Classic",o.block="Block",t.GRAPH_THEME_TEST=new s.ABTest("GraphThemeTest",[{name:r.monokai,weight:1},{name:r.classic,weight:1},{name:r.block,weight:1},]),(a=i=t.QuickstartTutorialTestGroups||(t.QuickstartTutorialTestGroups={}))["quickstart-v1"]="quickstart-v1",a["quickstart-with-lock"]="quickstart-with-lock";let c=new s.ABTest("2022-06-QuickstartTutorialTest",[{name:i["quickstart-v1"],weight:4},{name:i["quickstart-with-lock"],weight:1},]);t.MAIN_TUTORIAL_TYPE_NAME="main",t.CURRENT_TUTORIAL_TEST=c,t.CURRENT_AB_TESTS=[t.GRAPH_THEME_TEST,t.CURRENT_TUTORIAL_TEST,].filter(e=>!!e)},57984:function(e,t){"use strict";var n,r,i,o,a,s,u,c,l,f,d,p,h,m,v,g,y,b,E,w,x,_,S,C,A,D,O,k,T,N,P,I,M,F,R,L,j,B;Object.defineProperty(t,"__esModule",{value:!0}),t.DendronEvents=t.TreeViewEvents=t.GraphEvents=t.AppNames=t.NoteScrolledSource=t.EngagementEvents=t.NativeWorkspaceEvents=t.WorkspaceEvents=t.ContextualUIEvents=t.MigrationEvents=t.ConfigEvents=t.GitEvents=t.SurveyEvents=t.LookupEvents=t.ExtensionEvents=t.ConfirmStatus=t.KeybindingConflictDetectedSource=t.TutorialEvents=t.CLIEvents=t.VSCodeEvents=void 0,(w=n=t.VSCodeEvents||(t.VSCodeEvents={})).ServerCrashed="ServerCrashed",w.InitializeWorkspace="InitializeWorkspace",w.Install="Install",w.SchemaLookup_Show="SchemaLookup_Show",w.NoteLookup_Gather="NoteLookup_Gather",w.SchemaLookup_Gather="SchemaLookup_Gather",w.NoteLookup_Update="NoteLookup_Update",w.SchemaLookup_Update="SchemaLookup_Update",w.NoteLookup_Accept="NoteLookup_Accept",w.SchemaLookup_Accept="SchemaLookup_Accept",w.Upgrade="Upgrade",w.UpgradeSeeWhatsChangedClicked="UpgradeSeeWhatsChangedClicked",w.UpgradeViewClosed="UpgradeViewClosed",w.DisableTelemetry="DisableTelemetry",w.EnableTelemetry="EnableTelemetry",w.Uninstall="Uninstall",w.ShowLapsedUserMessage="Show_Lapsed_User_Msg",w.LapsedUserMessageAccepted="Lapsed_User_Msg_Accepted",w.LapsedUserMessageRejected="Show_Lapsed_User_Rejected",w.UserOnOldVSCodeVerUnblocked="User_On_Old_VSCode_Ver_Unblocked",w.ShowInactiveUserMessage="Show_Inactive_User_Message",w.FeatureShowcaseDisplayed="FeatureShowcasedDisplayed",w.FeatureShowcaseResponded="FeatureShowcaseResponded",w.HelpAndFeedbackItemClicked="HelpAndFeedbackItemClicked",w.BacklinksPanelUsed="BacklinksPanelUsed",w.RecentWorkspacesPanelUsed="RecentWorkspacesPanelUsed",w.V100ReleaseNotesShown="V100ReleaseNotesShown",w.NoteTraitsInitialized="NoteTraitsInitialized",(x=r=t.CLIEvents||(t.CLIEvents={})).CLITelemetryEnabled="CLI_Telemetry_Enabled",x.CLITelemetryDisabled="CLI_Telemetry_Disabled",x.CLIMigrationSucceeded="CLI_Migration_Succeeded",x.CLIMigrationFailed="CLI_Migration_Failed",x.CLIClientConfigMismatch="CLI_Client_Config_Mismatch",(_=i=t.TutorialEvents||(t.TutorialEvents={})).WelcomeShow="WelcomeShow",_.ClickStart="Getting_Started_Clicked",_.TutorialNoteViewed="TutorialNoteViewed",_.TutorialPreviewLinkClicked="TutorialPreviewLinkClicked",_.TutorialWorkspaceLaunching="TutorialWorkspaceLaunching",(S=o=t.KeybindingConflictDetectedSource||(t.KeybindingConflictDetectedSource={})).activation="activation",S.doctor="doctor",(C=a=t.ConfirmStatus||(t.ConfirmStatus={})).accepted="accepted",C.rejected="rejected",(A=s=t.ExtensionEvents||(t.ExtensionEvents={})).VimExtensionInstalled="Vim_Extension_Installed",A.IncompatibleExtensionsWarned="Incompatible_Extensions_Warned",A.IncompatibleExtensionsPreviewDisplayed="Incompatible_Extensions_Preview_Displayed",A.KeybindingConflictDetected="Keybinding_Conflict_Detected",A.ShowKeybindingConflictAccepted="Show_Keybinding_Conflict_Accepted",A.ShowKeybindingConflictRejected="Show_Keybinding_Conflict_Rejected",A.DeprecationNoticeShow="DeprecationNoticeShow",A.DeprecationNoticeAccept="DeprecationNoticeAccept",A.LocalhostBlockedNotified="LocalhostBlocked_Notified",A.LocalhostBlockedAccepted="LocalhostBlocked_Accepted",A.LocalhostBlockedRejected="LocalhostBlocked_Rejected",(D=u=t.LookupEvents||(t.LookupEvents={})).LookupModifierToggledByUser="Lookup_Modifier_Toggled_By_User",D.LookupModifiersSetOnAccept="Lookup_Modifiers_Set_On_Accept",(O=c=t.SurveyEvents||(t.SurveyEvents={})).InitialSurveyPrompted="Initial_Survey_Prompted",O.InitialSurveyAccepted="Initial_Survey_Accepted",O.InitialSurveyRejected="Initial_Survey_Rejected",O.ContextSurveyConfirm="contextSurveyConfirm",O.BackgroundAnswered="Background_Answered",O.BackgroundRejected="Background_Rejected",O.UseCaseAnswered="Use_Case_Answered",O.UseCaseRejected="Use_Case_Rejected",O.PublishingUseCaseAnswered="Publishing_Use_Case_Answered",O.PublishingUseCaseRejected="Publishing_Use_Case_Rejected",O.PriorToolsAnswered="Prior_Tools_Answered",O.PriorToolsRejected="Prior_Tools_Rejected",O.NewsletterSubscriptionAnswered="Newsletter_Subscription_Answered",O.NewsletterSubscriptionRejected="Newsletter_Subscription_Rejected",O.LapsedUserSurveyPrompted="Lapsed_User_Survey_Prompted",O.LapsedUserSurveyAccepted="Lapsed_User_Survey_Accepted",O.LapsedUserSurveyRejected="Lapsed_User_Survey_Rejected",O.LapsedUserReasonAnswered="Lapsed_User_Reason_Answered",O.LapsedUserReasonRejected="Lapsed_User_Reason_Rejected",O.LapsedUserGettingStartedHelpAnswered="Lapsed_User_Getting_Started_Help_Answered",O.LapsedUserGettingStartedHelpRejected="Lapsed_User_Getting_Started_Help_Rejected",O.LapsedUserAdditionalCommentAnswered="Lapsed_User_Additional_Comment_Answered",O.LapsedUserAdditionalCommentRejected="Lapsed_User_Additional_Comment_Rejected",O.LapsedUserDiscordPlugAnswered="Lapsed_User_Discord_Plug_Answered",O.LapsedUserDiscordPlugRejected="Lapsed_User_Discord_Plug_Rejected",O.InactiveUserSurveyPrompted="Inactive_User_Survey_Prompted",O.InactiveUserSurveyAccepted="Inactive_User_Survey_Accepted",O.InactiveUserSurveyRejected="Inactive_User_Survey_Rejected",O.InactiveUserSurveyPromptReason="Inactive_User_Prompt_Reason",(k=l=t.GitEvents||(t.GitEvents={})).ContributorsFound="ContributorsFound",k.TopLevelRepoFound="TopLevelRepoFound",(T=f=t.ConfigEvents||(t.ConfigEvents={})).ConfigNotMigrated="Config_Not_Migrated",T.EnabledExportPodV2="Enabled_Export_Pod_V2",T.ShowMissingDefaultConfigMessage="Show_Missing_Default_Config_Message",T.DeprecatedConfigMessageConfirm="DeprecatedConfigMessageConfirm",T.DeprecatedConfigMessageShow="ShowDeprecatedConfigMessage",T.MissingDefaultConfigMessageConfirm="MissingDefaultConfigMessageConfirm",T.DuplicateConfigEntryMessageShow="DuplicateConfigEntryMessageShow",T.DuplicateConfigEntryMessageConfirm="DuplicateConfigEntryMessageConfirm",T.MissingSelfContainedVaultsMessageShow="MissingSelfContainedVaultsMessageShow",T.MissingSelfContainedVaultsMessageAccept="MissingSelfContainedVaultsMessageAccept",T.OutdatedSeedVaultMessageShow="OutdatedSeedVaultMessageShow",T.OutdatedSeedVaultMessageAccept="OutdatedSeedVaultMessageAccept",T.ConfigChangeDetected="ConfigChangeDetected",(N=d=t.MigrationEvents||(t.MigrationEvents={})).MigrationSucceeded="Migration_Succeeded",N.MigrationFailed="Migration_Failed",N.ManualUpgradeMessageShow="ManualUpgradeMessageShow",N.ManualUpgradeMessageConfirm="ManualUpgradeMessageConfirm",(P=p=t.ContextualUIEvents||(t.ContextualUIEvents={})).ContextualUIRename="ContextualUI_Rename",P.ContextualUICreateNewFile="ContextualUI_CreateNewFile",P.ContextualUIDelete="ContextualUI_Delete",P.ContextualUICodeAction="ContextualUI_CodeAction",(I=h=t.WorkspaceEvents||(t.WorkspaceEvents={})).AutoFix="AutoFix",I.DuplicateNoteFound="DuplicateNoteFound",I.TransitiveDepsWarningShow="TransitiveDepsWarningShow",I.MultipleTelemetryIdsDetected="MultipleTelemetryIdsDetected",(M=m=t.NativeWorkspaceEvents||(t.NativeWorkspaceEvents={})).DetectedInNonDendronWS="Native_Workspace_Detected_In_Non_Dendron_WS",(F=v=t.EngagementEvents||(t.EngagementEvents={})).NoteViewed="NoteViewed",F.NoteScrolled="NoteScrolled",F.EngineStateChanged="EngineStateChanged",F.AdditionalNoteFromMeetingNoteCreated="AdditionalNoteFromMeetingNoteCreated",F.TemplateApplied="TemplateApplied",F.RefactoringCommandUsed="RefactoringCommandUsed",(R=g=t.NoteScrolledSource||(t.NoteScrolledSource={})).EDITOR="EDITOR",R.PREVIEW="PREVIEW",(L=y=t.AppNames||(t.AppNames={})).CODE="vscode",L.CLI="cli",L.EXPRESS_SERVER="express",L.CODE_WEB="vscode-web",(j=b=t.GraphEvents||(t.GraphEvents={})).GraphThemeChanged="GraphThemeChanged",j.GraphViewUsed="GraphViewUsed",j.GraphPanelUsed="GraphPanelUsed",(B=E=t.TreeViewEvents||(t.TreeViewEvents={})).NoteOmittedErrorMessageShow="NoteOmittedErrorMessageShow",B.NoteOmittedErrorMessageConfirm="NoteOmittedErrorMessageConfirm",t.DendronEvents={VSCodeEvents:n,CLIEvents:r,GitEvents:l,TutorialEvents:i,ExtensionEvents:s,SurveyEvents:c,ConfigEvents:f,ContextualUIEvents:p,NativeWorkspaceEvents:m,WorkspaceEvents:h,EngagementEvents:v,GraphEvents:b,TreeViewEvents:E}},48786:function(e,t,n){"use strict";var r=this&&this.__createBinding||(Object.create?function(e,t,n,r){void 0===r&&(r=n);var i=Object.getOwnPropertyDescriptor(t,n);(!i||("get"in i?!t.__esModule:i.writable||i.configurable))&&(i={enumerable:!0,get:function(){return t[n]}}),Object.defineProperty(e,r,i)}:function(e,t,n,r){void 0===r&&(r=n),e[r]=t[n]}),i=this&&this.__setModuleDefault||(Object.create?function(e,t){Object.defineProperty(e,"default",{enumerable:!0,value:t})}:function(e,t){e.default=t}),o=this&&this.__importStar||function(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)"default"!==n&&Object.prototype.hasOwnProperty.call(e,n)&&r(t,e,n);return i(t,e),t},a=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.DendronApiV2=t.DendronAPI=t.APIUtils=t.createNoOpLogger=void 0;let s=a(n(9669)),u=a(n(96486)),c=o(n(80129)),l=n(8115);function f(){let e=e=>{};return{level:"",debug:e,info:e,error:e}}t.createNoOpLogger=f;class d{static getLocalEndpoint(e){return`http://localhost:${e}`}}t.APIUtils=d;class p{constructor(e){(e=u.default.defaults(e,{logger:f(),statusHandlers:{},onAuth:async({headers:e})=>e,onBuildHeaders:({headers:e})=>e,onError(e){}}))._request||(e._request=s.default.create({})),this.opts=e}_log(e,t="info"){this.opts.logger[t](e)}_createPayload(e){return{data:e}}async _doRequest({auth:e=!1,qs:t={},path:n,body:r={},method:i="get",json:o=!0}){let a={},{_request:s,onAuth:u,onBuildHeaders:l,endpoint:f,apiPath:d}=this.opts;e&&(a=await u({headers:a})),a=await l({headers:a});let p={url:[f,d,n].join("/"),qs:t,body:r,json:o,...a};this._log({ctx:"pre-request",requestParams:p},"debug");let h=c.stringify(p.qs);return"get"===i?s.get(p.url+`?${h}`,{headers:a}):s.post(p.url+`?${h}`,r,{headers:a})}async _makeRequest(e,t){var n,r,i;let o=this._createPayload(t);try{let a=await this._doRequest(e);o.data=a.data.data,o.error=a.data.error}catch(s){this._log(o.error,"error"),o.error=(null===(r=null===(n=null==s?void 0:s.response)||void 0===n?void 0:n.data)||void 0===r?void 0:r.error)||(null===(i=null==s?void 0:s.response)||void 0===i?void 0:i.data)||s}return o.error&&this._log(o.error,"error"),o}async _makeRequestRaw(e){try{let t=await this._doRequest(e);if(t.data.error)return new l.DendronError({...t.data.error});return t.data}catch(n){return new l.DendronError({...n.response.data.error})}}}let h;class m extends p{static getOrCreate(e){return u.default.isUndefined(h)?new m(e):this.instance()}static instance(){if(u.default.isUndefined(h))throw Error("no dendron api");return h}assetGet(e){return this._makeRequestRaw({path:"assets/",method:"get",qs:e})}assetGetTheme(e){return this._makeRequestRaw({path:"assets/theme",method:"get",qs:e})}configGet(e){return this._makeRequest({path:"config/get",method:"get",qs:e})}workspaceInit(e){return this._makeRequest({path:"workspace/initialize",method:"post",body:{...e}})}workspaceSync(e){return this._makeRequest({path:"workspace/sync",method:"post",body:e})}engineBulkAdd(e){return this._makeRequest({path:"note/bulkAdd",method:"post",body:e})}engineDelete(e){return this._makeRequest({path:"note/delete",method:"post",body:e})}engineInfo(){return this._makeRequest({path:"note/info",method:"get"})}engineRenameNote(e){return this._makeRequest({path:"note/rename",method:"post",body:e})}engineWrite(e){return this._makeRequest({path:"note/write",method:"post",body:e})}noteGet(e){return this._makeRequest({path:"note/get",method:"get",qs:e})}noteGetMeta(e){return this._makeRequest({path:"note/getMeta",method:"get",qs:e})}noteBulkGet(e){return this._makeRequest({path:"note/bulkGet",method:"get",qs:e})}noteBulkGetMeta(e){return this._makeRequest({path:"note/bulkGetMeta",method:"get",qs:e})}noteFind(e){return this._makeRequest({path:"note/find",method:"post",body:e})}noteFindMeta(e){return this._makeRequest({path:"note/findMeta",method:"post",body:e})}noteQuery(e){return this._makeRequest({path:"note/query",method:"get",qs:e})}noteRender(e){return this._makeRequest({path:"note/render",method:"post",body:e})}getNoteBlocks(e){return this._makeRequest({path:"note/blocks",method:"get",qs:e})}getDecorations(e){return this._makeRequest({path:"note/decorations",method:"post",body:e})}schemaDelete(e){return this._makeRequest({path:"schema/delete",method:"post",body:e})}schemaRead(e){return this._makeRequest({path:"schema/get",method:"get",qs:e})}schemaQuery(e){return this._makeRequest({path:"schema/query",method:"post",body:e})}schemaWrite(e){return this._makeRequest({path:"schema/write",method:"post",body:e})}}t.DendronAPI=m,t.DendronApiV2=m},18381:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.assert=t.assertExists=t.AssertionError=void 0;let i=r(n(96486));class o extends Error{}function a(e,t){if(i.default.isNull(e)||i.default.isUndefined(e))throw new o(t);return e}function s(e,t){if(e)return!0;throw new o(t)}t.AssertionError=o,t.assertExists=a,t.assert=s},73497:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.COLORS_LIST=t.XKCD_COLORS=t.DENDRON_COLORS=void 0,t.DENDRON_COLORS={"dendron green":"#00A824"},t.XKCD_COLORS={"cloudy blue":"#acc2d9","dark pastel green":"#56ae57",dust:"#b2996e","electric lime":"#a8ff04","fresh green":"#69d84f","light eggplant":"#894585","nasty green":"#70b23f","really light blue":"#d4ffff",tea:"#65ab7c","warm purple":"#952e8f","yellowish tan":"#fcfc81",cement:"#a5a391","dark grass green":"#388004","dusty teal":"#4c9085","grey teal":"#5e9b8a","macaroni and cheese":"#efb435","pinkish tan":"#d99b82",spruce:"#0a5f38","strong blue":"#0c06f7","toxic green":"#61de2a","windows blue":"#3778bf","blue blue":"#2242c7","blue with a hint of purple":"#533cc6",booger:"#9bb53c","bright sea green":"#05ffa6","dark green blue":"#1f6357","deep turquoise":"#017374","green teal":"#0cb577","strong pink":"#ff0789",bland:"#afa88b","deep aqua":"#08787f","lavender pink":"#dd85d7","light moss green":"#a6c875","light seafoam green":"#a7ffb5","olive yellow":"#c2b709","pig pink":"#e78ea5","deep lilac":"#966ebd",desert:"#ccad60","dusty lavender":"#ac86a8","purpley grey":"#947e94",purply:"#983fb2","candy pink":"#ff63e9","light pastel green":"#b2fba5","boring green":"#63b365","kiwi green":"#8ee53f","light grey green":"#b7e1a1","orange pink":"#ff6f52","tea green":"#bdf8a3","very light brown":"#d3b683","egg shell":"#fffcc4","eggplant purple":"#430541","powder pink":"#ffb2d0","reddish grey":"#997570","baby shit brown":"#ad900d",liliac:"#c48efd","stormy blue":"#507b9c","ugly brown":"#7d7103",custard:"#fffd78","darkish pink":"#da467d","deep brown":"#410200","greenish beige":"#c9d179",manilla:"#fffa86","off blue":"#5684ae","battleship grey":"#6b7c85","browny green":"#6f6c0a",bruise:"#7e4071","kelley green":"#009337","sickly yellow":"#d0e429","sunny yellow":"#fff917",azul:"#1d5dec",darkgreen:"#054907","green/yellow":"#b5ce08",lichen:"#8fb67b","light light green":"#c8ffb0","pale gold":"#fdde6c","sun yellow":"#ffdf22","tan green":"#a9be70",burple:"#6832e3",butterscotch:"#fdb147",toupe:"#c7ac7d","dark cream":"#fff39a","indian red":"#850e04","light lavendar":"#efc0fe","poison green":"#40fd14","baby puke green":"#b6c406","bright yellow green":"#9dff00","charcoal grey":"#3c4142",squash:"#f2ab15",cinnamon:"#ac4f06","light pea green":"#c4fe82","radioactive green":"#2cfa1f","raw sienna":"#9a6200","baby purple":"#ca9bf7",cocoa:"#875f42","light royal blue":"#3a2efe",orangeish:"#fd8d49","rust brown":"#8b3103","sand brown":"#cba560",swamp:"#698339","tealish green":"#0cdc73","burnt siena":"#b75203",camo:"#7f8f4e","dusk blue":"#26538d",fern:"#63a950","old rose":"#c87f89","pale light green":"#b1fc99","peachy pink":"#ff9a8a","rosy pink":"#f6688e","light bluish green":"#76fda8","light bright green":"#53fe5c","light neon green":"#4efd54","light seafoam":"#a0febf","tiffany blue":"#7bf2da","washed out green":"#bcf5a6","browny orange":"#ca6b02","nice blue":"#107ab0",sapphire:"#2138ab","greyish teal":"#719f91","orangey yellow":"#fdb915",parchment:"#fefcaf",straw:"#fcf679","very dark brown":"#1d0200",terracota:"#cb6843","ugly blue":"#31668a","clear blue":"#247afd",creme:"#ffffb6","foam green":"#90fda9","grey/green":"#86a17d","light gold":"#fddc5c","seafoam blue":"#78d1b6",topaz:"#13bbaf","violet pink":"#fb5ffc",wintergreen:"#20f986","yellow tan":"#ffe36e","dark fuchsia":"#9d0759","indigo blue":"#3a18b1","light yellowish green":"#c2ff89","pale magenta":"#d767ad","rich purple":"#720058","sunflower yellow":"#ffda03","green/blue":"#01c08d",leather:"#ac7434","racing green":"#014600","vivid purple":"#9900fa","dark royal blue":"#02066f",hazel:"#8e7618","muted pink":"#d1768f","booger green":"#96b403",canary:"#fdff63","cool grey":"#95a3a6","dark taupe":"#7f684e","darkish purple":"#751973","true green":"#089404","coral pink":"#ff6163","dark sage":"#598556","dark slate blue":"#214761","flat blue":"#3c73a8",mushroom:"#ba9e88","rich blue":"#021bf9","dirty purple":"#734a65",greenblue:"#23c48b","icky green":"#8fae22","light khaki":"#e6f2a2","warm blue":"#4b57db","dark hot pink":"#d90166","deep sea blue":"#015482",carmine:"#9d0216","dark yellow green":"#728f02","pale peach":"#ffe5ad","plum purple":"#4e0550","golden rod":"#f9bc08","neon red":"#ff073a","old pink":"#c77986","very pale blue":"#d6fffe","blood orange":"#fe4b03",grapefruit:"#fd5956","sand yellow":"#fce166","clay brown":"#b2713d","dark blue grey":"#1f3b4d","flat green":"#699d4c","light green blue":"#56fca2","warm pink":"#fb5581","dodger blue":"#3e82fc","gross green":"#a0bf16",ice:"#d6fffa","metallic blue":"#4f738e","pale salmon":"#ffb19a","sap green":"#5c8b15",algae:"#54ac68","bluey grey":"#89a0b0","greeny grey":"#7ea07a","highlighter green":"#1bfc06","light light blue":"#cafffb","light mint":"#b6ffbb","raw umber":"#a75e09","vivid blue":"#152eff","deep lavender":"#8d5eb7","dull teal":"#5f9e8f","light greenish blue":"#63f7b4","mud green":"#606602",pinky:"#fc86aa","red wine":"#8c0034","shit green":"#758000","tan brown":"#ab7e4c",darkblue:"#030764",rosa:"#fe86a4",lipstick:"#d5174e","pale mauve":"#fed0fc",claret:"#680018",dandelion:"#fedf08",orangered:"#fe420f","poop green":"#6f7c00",ruby:"#ca0147",dark:"#1b2431","greenish turquoise":"#00fbb0","pastel red":"#db5856","piss yellow":"#ddd618","bright cyan":"#41fdfe","dark coral":"#cf524e","algae green":"#21c36f","darkish red":"#a90308","reddy brown":"#6e1005","blush pink":"#fe828c","camouflage green":"#4b6113","lawn green":"#4da409",putty:"#beae8a","vibrant blue":"#0339f8","dark sand":"#a88f59","purple/blue":"#5d21d0",saffron:"#feb209",twilight:"#4e518b","warm brown":"#964e02",bluegrey:"#85a3b2","bubble gum pink":"#ff69af","duck egg blue":"#c3fbf4","greenish cyan":"#2afeb7",petrol:"#005f6a",royal:"#0c1793",butter:"#ffff81","dusty orange":"#f0833a","off yellow":"#f1f33f","pale olive green":"#b1d27b",orangish:"#fc824a",leaf:"#71aa34","light blue grey":"#b7c9e2","dried blood":"#4b0101","lightish purple":"#a552e6","rusty red":"#af2f0d","lavender blue":"#8b88f8","light grass green":"#9af764","light mint green":"#a6fbb2",sunflower:"#ffc512",velvet:"#750851","brick orange":"#c14a09","lightish red":"#fe2f4a","pure blue":"#0203e2","twilight blue":"#0a437a","violet red":"#a50055","yellowy brown":"#ae8b0c",carnation:"#fd798f","muddy yellow":"#bfac05","dark seafoam green":"#3eaf76","deep rose":"#c74767","dusty red":"#b9484e","grey/blue":"#647d8e","lemon lime":"#bffe28","purple/pink":"#d725de","brown yellow":"#b29705","purple brown":"#673a3f",wisteria:"#a87dc2","banana yellow":"#fafe4b","lipstick red":"#c0022f","water blue":"#0e87cc","brown grey":"#8d8468","vibrant purple":"#ad03de","baby green":"#8cff9e","barf green":"#94ac02","eggshell blue":"#c4fff7","sandy yellow":"#fdee73","cool green":"#33b864",pale:"#fff9d0","blue/grey":"#758da3","hot magenta":"#f504c9",greyblue:"#77a1b5",purpley:"#8756e4","baby shit green":"#889717","brownish pink":"#c27e79","dark aquamarine":"#017371",diarrhea:"#9f8303","light mustard":"#f7d560","pale sky blue":"#bdf6fe","turtle green":"#75b84f","bright olive":"#9cbb04","dark grey blue":"#29465b","greeny brown":"#696006","lemon green":"#adf802","light periwinkle":"#c1c6fc","seaweed green":"#35ad6b","sunshine yellow":"#fffd37","ugly purple":"#a442a0","medium pink":"#f36196","puke brown":"#947706","very light pink":"#fff4f2",viridian:"#1e9167",bile:"#b5c306","faded yellow":"#feff7f","very pale green":"#cffdbc","vibrant green":"#0add08","bright lime":"#87fd05",spearmint:"#1ef876","light aquamarine":"#7bfdc7","light sage":"#bcecac",yellowgreen:"#bbf90f","baby poo":"#ab9004","dark seafoam":"#1fb57a","deep teal":"#00555a",heather:"#a484ac","rust orange":"#c45508","dirty blue":"#3f829d","fern green":"#548d44","bright lilac":"#c95efb","weird green":"#3ae57f","peacock blue":"#016795","avocado green":"#87a922","faded orange":"#f0944d","grape purple":"#5d1451","hot green":"#25ff29","lime yellow":"#d0fe1d",mango:"#ffa62b",shamrock:"#01b44c",bubblegum:"#ff6cb5","purplish brown":"#6b4247","vomit yellow":"#c7c10c","pale cyan":"#b7fffa","key lime":"#aeff6e","tomato red":"#ec2d01",lightgreen:"#76ff7b",merlot:"#730039","night blue":"#040348","purpleish pink":"#df4ec8",apple:"#6ecb3c","baby poop green":"#8f9805","green apple":"#5edc1f",heliotrope:"#d94ff5","yellow/green":"#c8fd3d","almost black":"#070d0d","cool blue":"#4984b8","leafy green":"#51b73b","mustard brown":"#ac7e04",dusk:"#4e5481","dull brown":"#876e4b","frog green":"#58bc08","vivid green":"#2fef10","bright light green":"#2dfe54","fluro green":"#0aff02",kiwi:"#9cef43",seaweed:"#18d17b","navy green":"#35530a","ultramarine blue":"#1805db",iris:"#6258c4","pastel orange":"#ff964f","yellowish orange":"#ffab0f",perrywinkle:"#8f8ce7",tealish:"#24bca8","dark plum":"#3f012c",pear:"#cbf85f","pinkish orange":"#ff724c","midnight purple":"#280137","light urple":"#b36ff6","dark mint":"#48c072","greenish tan":"#bccb7a","light burgundy":"#a8415b","turquoise blue":"#06b1c4","ugly pink":"#cd7584",sandy:"#f1da7a","electric pink":"#ff0490","muted purple":"#805b87","mid green":"#50a747",greyish:"#a8a495","neon yellow":"#cfff04",banana:"#ffff7e","carnation pink":"#ff7fa7",tomato:"#ef4026",sea:"#3c9992","muddy brown":"#886806","turquoise green":"#04f489",buff:"#fef69e",fawn:"#cfaf7b","muted blue":"#3b719f","pale rose":"#fdc1c5","dark mint green":"#20c073",amethyst:"#9b5fc0","blue/green":"#0f9b8e",chestnut:"#742802","sick green":"#9db92c",pea:"#a4bf20","rusty orange":"#cd5909",stone:"#ada587","rose red":"#be013c","pale aqua":"#b8ffeb","deep orange":"#dc4d01",earth:"#a2653e","mossy green":"#638b27","grassy green":"#419c03","pale lime green":"#b1ff65","light grey blue":"#9dbcd4","pale grey":"#fdfdfe",asparagus:"#77ab56",blueberry:"#464196","purple red":"#990147","pale lime":"#befd73","greenish teal":"#32bf84",caramel:"#af6f09","deep magenta":"#a0025c","light peach":"#ffd8b1","milk chocolate":"#7f4e1e",ocher:"#bf9b0c","off green":"#6ba353","purply pink":"#f075e6",lightblue:"#7bc8f6","dusky blue":"#475f94",golden:"#f5bf03","light beige":"#fffeb6","butter yellow":"#fffd74","dusky purple":"#895b7b","french blue":"#436bad","ugly yellow":"#d0c101","greeny yellow":"#c6f808","orangish red":"#f43605","shamrock green":"#02c14d","orangish brown":"#b25f03","tree green":"#2a7e19","deep violet":"#490648",gunmetal:"#536267","blue/purple":"#5a06ef",cherry:"#cf0234","sandy brown":"#c4a661","warm grey":"#978a84","dark indigo":"#1f0954",midnight:"#03012d","bluey green":"#2bb179","grey pink":"#c3909b","soft purple":"#a66fb5",blood:"#770001","brown red":"#922b05","medium grey":"#7d7f7c",berry:"#990f4b",poo:"#8f7303","purpley pink":"#c83cb9","light salmon":"#fea993",snot:"#acbb0d","easter purple":"#c071fe","light yellow green":"#ccfd7f","dark navy blue":"#00022e",drab:"#828344","light rose":"#ffc5cb",rouge:"#ab1239","purplish red":"#b0054b","slime green":"#99cc04","baby poop":"#937c00","irish green":"#019529","pink/purple":"#ef1de7","dark navy":"#000435","greeny blue":"#42b395","light plum":"#9d5783","pinkish grey":"#c8aca9","dirty orange":"#c87606","rust red":"#aa2704","pale lilac":"#e4cbff","orangey red":"#fa4224","primary blue":"#0804f9","kermit green":"#5cb200","brownish purple":"#76424e","murky green":"#6c7a0e",wheat:"#fbdd7e","very dark purple":"#2a0134","bottle green":"#044a05",watermelon:"#fd4659","deep sky blue":"#0d75f8","fire engine red":"#fe0002","yellow ochre":"#cb9d06","pumpkin orange":"#fb7d07","pale olive":"#b9cc81","light lilac":"#edc8ff","lightish green":"#61e160","carolina blue":"#8ab8fe",mulberry:"#920a4e","shocking pink":"#fe02a2",auburn:"#9a3001","bright lime green":"#65fe08",celadon:"#befdb7","pinkish brown":"#b17261","poo brown":"#885f01","bright sky blue":"#02ccfe",celery:"#c1fd95","dirt brown":"#836539",strawberry:"#fb2943","dark lime":"#84b701",copper:"#b66325","medium brown":"#7f5112","muted green":"#5fa052","robin's egg":"#6dedfd","bright aqua":"#0bf9ea","bright lavender":"#c760ff",ivory:"#ffffcb","very light purple":"#f6cefc","light navy":"#155084","pink red":"#f5054f","olive brown":"#645403","poop brown":"#7a5901","mustard green":"#a8b504","ocean green":"#3d9973","very dark blue":"#000133","dusty green":"#76a973","light navy blue":"#2e5a88","minty green":"#0bf77d",adobe:"#bd6c48",barney:"#ac1db8","jade green":"#2baf6a","bright light blue":"#26f7fd","light lime":"#aefd6c","dark khaki":"#9b8f55","orange yellow":"#ffad01",ocre:"#c69c04",maize:"#f4d054","faded pink":"#de9dac","british racing green":"#05480d",sandstone:"#c9ae74","mud brown":"#60460f","light sea green":"#98f6b0","robin egg blue":"#8af1fe","aqua marine":"#2ee8bb","dark sea green":"#11875d","soft pink":"#fdb0c0","orangey brown":"#b16002","cherry red":"#f7022a","burnt yellow":"#d5ab09","brownish grey":"#86775f",camel:"#c69f59","purplish grey":"#7a687f",marine:"#042e60","greyish pink":"#c88d94","pale turquoise":"#a5fbd5","pastel yellow":"#fffe71","bluey purple":"#6241c7","canary yellow":"#fffe40","faded red":"#d3494e",sepia:"#985e2b",coffee:"#a6814c","bright magenta":"#ff08e8",mocha:"#9d7651",ecru:"#feffca",purpleish:"#98568d",cranberry:"#9e003a","darkish green":"#287c37","brown orange":"#b96902","dusky rose":"#ba6873",melon:"#ff7855","sickly green":"#94b21c",silver:"#c5c9c7","purply blue":"#661aee","purpleish blue":"#6140ef","hospital green":"#9be5aa","shit brown":"#7b5804","mid blue":"#276ab3",amber:"#feb308","easter green":"#8cfd7e","soft blue":"#6488ea","cerulean blue":"#056eee","golden brown":"#b27a01","bright turquoise":"#0ffef9","red pink":"#fa2a55","red purple":"#820747","greyish brown":"#7a6a4f",vermillion:"#f4320c",russet:"#a13905","steel grey":"#6f828a","lighter purple":"#a55af4","bright violet":"#ad0afd","prussian blue":"#004577","slate green":"#658d6d","dirty pink":"#ca7b80","dark blue green":"#005249",pine:"#2b5d34","yellowy green":"#bff128","dark gold":"#b59410",bluish:"#2976bb","darkish blue":"#014182","dull red":"#bb3f3f","pinky red":"#fc2647",bronze:"#a87900","pale teal":"#82cbb2","military green":"#667c3e","barbie pink":"#fe46a5","bubblegum pink":"#fe83cc","pea soup green":"#94a617","dark mustard":"#a88905",shit:"#7f5f00","medium purple":"#9e43a2","very dark green":"#062e03",dirt:"#8a6e45","dusky pink":"#cc7a8b","red violet":"#9e0168","lemon yellow":"#fdff38",pistachio:"#c0fa8b","dull yellow":"#eedc5b","dark lime green":"#7ebd01","denim blue":"#3b5b92","teal blue":"#01889f","lightish blue":"#3d7afd","purpley blue":"#5f34e7","light indigo":"#6d5acf","swamp green":"#748500","brown green":"#706c11","dark maroon":"#3c0008","hot purple":"#cb00f5","dark forest green":"#002d04","faded blue":"#658cbb","drab green":"#749551","light lime green":"#b9ff66","snot green":"#9dc100",yellowish:"#faee66","light blue green":"#7efbb3",bordeaux:"#7b002c","light mauve":"#c292a1",ocean:"#017b92",marigold:"#fcc006","muddy green":"#657432","dull orange":"#d8863b",steel:"#738595","electric purple":"#aa23ff","fluorescent green":"#08ff08","yellowish brown":"#9b7a01",blush:"#f29e8e","soft green":"#6fc276","bright orange":"#ff5b00",lemon:"#fdff52","purple grey":"#866f85","acid green":"#8ffe09","pale lavender":"#eecffe","violet blue":"#510ac9","light forest green":"#4f9153","burnt red":"#9f2305","khaki green":"#728639",cerise:"#de0c62","faded purple":"#916e99",apricot:"#ffb16d","dark olive green":"#3c4d03","grey brown":"#7f7053","green grey":"#77926f","true blue":"#010fcc","pale violet":"#ceaefa","periwinkle blue":"#8f99fb","light sky blue":"#c6fcff",blurple:"#5539cc","green brown":"#544e03",bluegreen:"#017a79","bright teal":"#01f9c6","brownish yellow":"#c9b003","pea soup":"#929901",forest:"#0b5509","barney purple":"#a00498",ultramarine:"#2000b1",purplish:"#94568c","puke yellow":"#c2be0e","bluish grey":"#748b97","dark periwinkle":"#665fd1","dark lilac":"#9c6da5",reddish:"#c44240","light maroon":"#a24857","dusty purple":"#825f87","terra cotta":"#c9643b",avocado:"#90b134","marine blue":"#01386a","teal green":"#25a36f","slate grey":"#59656d","lighter green":"#75fd63","electric green":"#21fc0d","dusty blue":"#5a86ad","golden yellow":"#fec615","bright yellow":"#fffd01","light lavender":"#dfc5fe",umber:"#b26400",poop:"#7f5e00","dark peach":"#de7e5d","jungle green":"#048243",eggshell:"#ffffd4",denim:"#3b638c","yellow brown":"#b79400","dull purple":"#84597e","chocolate brown":"#411900","wine red":"#7b0323","neon blue":"#04d9ff","dirty green":"#667e2c","light tan":"#fbeeac","ice blue":"#d7fffe","cadet blue":"#4e7496","dark mauve":"#874c62","very light blue":"#d5ffff","grey purple":"#826d8c","pastel pink":"#ffbacd","very light green":"#d1ffbd","dark sky blue":"#448ee4",evergreen:"#05472a","dull pink":"#d5869d",aubergine:"#3d0734",mahogany:"#4a0100","reddish orange":"#f8481c","deep green":"#02590f","vomit green":"#89a203","purple pink":"#e03fd8","dusty pink":"#d58a94","faded green":"#7bb274","camo green":"#526525","pinky purple":"#c94cbe","pink purple":"#db4bda","brownish red":"#9e3623","dark rose":"#b5485d",mud:"#735c12",brownish:"#9c6d57","emerald green":"#028f1e","pale brown":"#b1916e","dull blue":"#49759c","burnt umber":"#a0450e","medium green":"#39ad48",clay:"#b66a50","light aqua":"#8cffdb","light olive green":"#a4be5c","brownish orange":"#cb7723","dark aqua":"#05696b","purplish pink":"#ce5dae","dark salmon":"#c85a53","greenish grey":"#96ae8d",jade:"#1fa774","ugly green":"#7a9703","dark beige":"#ac9362",emerald:"#01a049","pale red":"#d9544d","light magenta":"#fa5ff7",sky:"#82cafc","light cyan":"#acfffc","yellow orange":"#fcb001","reddish purple":"#910951","reddish pink":"#fe2c54",orchid:"#c875c4","dirty yellow":"#cdc50a","orange red":"#fd411e","deep red":"#9a0200","orange brown":"#be6400","cobalt blue":"#030aa7","neon pink":"#fe019a","rose pink":"#f7879a","greyish purple":"#887191",raspberry:"#b00149","aqua green":"#12e193","salmon pink":"#fe7b7c",tangerine:"#ff9408","brownish green":"#6a6e09","red brown":"#8b2e16","greenish brown":"#696112",pumpkin:"#e17701","pine green":"#0a481e",charcoal:"#343837","baby pink":"#ffb7ce",cornflower:"#6a79f7","blue violet":"#5d06e9",chocolate:"#3d1c02","greyish green":"#82a67d",scarlet:"#be0119","green yellow":"#c9ff27","dark olive":"#373e02",sienna:"#a9561e","pastel purple":"#caa0ff",terracotta:"#ca6641","aqua blue":"#02d8e9","sage green":"#88b378","blood red":"#980002","deep pink":"#cb0162",grass:"#5cac2d",moss:"#769958","pastel blue":"#a2bffe","bluish green":"#10a674","green blue":"#06b48b","dark tan":"#af884a","greenish blue":"#0b8b87","pale orange":"#ffa756",vomit:"#a2a415","forrest green":"#154406","dark lavender":"#856798","dark violet":"#34013f","purple blue":"#632de9","dark cyan":"#0a888a","olive drab":"#6f7632",pinkish:"#d46a7e",cobalt:"#1e488f","neon purple":"#bc13fe","light turquoise":"#7ef4cc","apple green":"#76cd26","dull green":"#74a662",wine:"#80013f","powder blue":"#b1d1fc","off white":"#ffffe4","electric blue":"#0652ff","dark turquoise":"#045c5a","blue purple":"#5729ce",azure:"#069af3","bright red":"#ff000","pinkish red":"#f10c45","cornflower blue":"#5170d7","light olive":"#acbf69",grape:"#6c3461","greyish blue":"#5e819d","purplish blue":"#601ef9","yellowish green":"#b0dd16","greenish yellow":"#cdfd02","medium blue":"#2c6fbb","dusty rose":"#c0737a","light violet":"#d6b4fc","midnight blue":"#020035","bluish purple":"#703be7","red orange":"#fd3c06","dark magenta":"#960056",greenish:"#40a368","ocean blue":"#03719c",coral:"#fc5a50",cream:"#ffffc2","reddish brown":"#7f2b0a","burnt sienna":"#b04e0f",brick:"#a03623",sage:"#87ae73","grey green":"#789b73",white:"#ffffff","robin's egg blue":"#98eff9","moss green":"#658b38","steel blue":"#5a7d9a",eggplant:"#380835","light yellow":"#fffe7a","leaf green":"#5ca904","light grey":"#d8dcd6",puke:"#a5a502","pinkish purple":"#d648d7","sea blue":"#047495","pale purple":"#b790d4","slate blue":"#5b7c99","blue grey":"#607c8e","hunter green":"#0b4008",fuchsia:"#ed0dd9",crimson:"#8c000f","pale yellow":"#ffff84",ochre:"#bf9005","mustard yellow":"#d2bd0a","light red":"#ff474c",cerulean:"#0485d1","pale pink":"#ffcfdc","deep blue":"#040273",rust:"#a83c09","light teal":"#90e4c1",slate:"#516572",goldenrod:"#fac205","dark yellow":"#d5b60a","dark grey":"#363737","army green":"#4b5d16","grey blue":"#6b8ba4",seafoam:"#80f9ad",puce:"#a57e52","spring green":"#a9f971","dark orange":"#c65102",sand:"#e2ca76","pastel green":"#b0ff9d",mint:"#9ffeb0","light orange":"#fdaa48","bright pink":"#fe01b1",chartreuse:"#c1f80a","deep purple":"#36013f","dark brown":"#341c02",taupe:"#b9a281","pea green":"#8eab12","puke green":"#9aae07","kelly green":"#02ab2e","seafoam green":"#7af9ab","blue green":"#137e6d",khaki:"#aaa662",burgundy:"#610023","dark teal":"#014d4e","brick red":"#8f1402","royal purple":"#4b006e",plum:"#580f41","mint green":"#8fff9f",gold:"#dbb40c","baby blue":"#a2cffe","yellow green":"#c0fb2d","bright purple":"#be03fd","dark red":"#840000","pale blue":"#d0fefe","grass green":"#3f9b0b",navy:"#01153e",aquamarine:"#04d8b2","burnt orange":"#c04e01","neon green":"#0cff0c","bright blue":"#0165fc",rose:"#cf6275","light pink":"#ffd1df",mustard:"#ceb301",indigo:"#380282",lime:"#aaff32","sea green":"#53fca1",periwinkle:"#8e82fe","dark pink":"#cb416b","olive green":"#677a04",peach:"#ffb07c","pale green":"#c7fdb5","light brown":"#ad8150","hot pink":"#ff028d",black:"#000000",lilac:"#cea2fd","navy blue":"#001146","royal blue":"#0504aa",beige:"#e6daa6",salmon:"#ff796c",olive:"#6e750e",maroon:"#650021","bright green":"#01ff07","dark purple":"#35063e",mauve:"#ae7181","forest green":"#06470c",aqua:"#13eac9",cyan:"#00ffff",tan:"#d1b26f","dark blue":"#00035b",lavender:"#c79fef",turquoise:"#06c2ac","dark green":"#033500",violet:"#9a0eea","light purple":"#bf77f6","lime green":"#89fe05",grey:"#929591","sky blue":"#75bbfd",yellow:"#ffff14",magenta:"#c20078","light green":"#96f97b",orange:"#f97306",teal:"#029386","light blue":"#95d0fc",red:"#e50000",brown:"#653700",pink:"#ff81c0",blue:"#0343df",green:"#15b01a",purple:"#7e1e9c"},t.COLORS_LIST=Object.values(t.XKCD_COLORS)},9445:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.config=t.prod=t.dev=t.local=t.test=t.global=void 0,t.global={},t.test={COGNITO_POOL_ID:"TODO",COGNITO_CLIENT_ID:"TODO",SEGMENT_WEB_KEY:"TODO",SEGMENT_VSCODE_KEY:"TODO"},t.local={COGNITO_POOL_ID:"TODO",COGNITO_CLIENT_ID:"TODO",SEGMENT_WEB_KEY:"TODO",SEGMENT_VSCODE_KEY:"TODO"},t.dev={COGNITO_POOL_ID:"us-west-2_X6icVFghe",COGNITO_CLIENT_ID:"19vkp969ss471e424pfh7trq33",SEGMENT_WEB_KEY:"K62tHP5N3jhd2i1tUNuSyEpPoJmG1tZo",SEGMENT_VSCODE_KEY:"Gh1H6hRdVHRIbnjWtw9DBgoGoBSUdjME"},t.prod={COGNITO_POOL_ID:"us-west-2_X6icVFghe",COGNITO_CLIENT_ID:"19vkp969ss471e424pfh7trq33",SEGMENT_WEB_KEY:"TODO",SEGMENT_VSCODE_KEY:"TVO9BpMkMjzJcHaG3nZb5xc9Gm6BGsdB"},t.config={global:t.global,test:t.test,local:t.local,dev:t.dev,prod:t.prod}},69426:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.VAULT_SYNC_MODES=void 0;let r=n(65047);t.VAULT_SYNC_MODES={[r.VaultSyncModeEnum.skip]:{value:r.VaultSyncModeEnum.skip,label:"Skip",desc:"Skip entirely. You must manage the repository manually."},[r.VaultSyncModeEnum.noPush]:{value:r.VaultSyncModeEnum.noPush,label:"No Push",desc:"Commit any changes and pull updates, but don't push. You can watch the repository and make local changes without sharing them back"},[r.VaultSyncModeEnum.noCommit]:{value:r.VaultSyncModeEnum.noCommit,label:"No Commit",desc:"Pull and push updates if the workspace is clean, but don't commit. You manually commit your local changes, but automatically share them once you committed."},[r.VaultSyncModeEnum.sync]:{value:r.VaultSyncModeEnum.sync,label:"Sync",desc:"Commit changes, and pull and push updates. Treats workspace vaults like regular vaults."}}},38680:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.COMMANDS=t.INSERT_NOTE_INDEX=t.SELECTION_MODES=void 0;let r=n(19827),i=n(9504);t.SELECTION_MODES={[r.LookupSelectionModeEnum.extract]:{value:r.LookupSelectionModeEnum.extract,label:"Extract Selection",desc:"Extract selection of active editor and use it as body of new note."},[r.LookupSelectionModeEnum.link]:{value:r.LookupSelectionModeEnum.link,label:"Selection to Link",desc:"Use selection of active editor for the basename of the lookup value."},[r.LookupSelectionModeEnum.none]:{value:r.LookupSelectionModeEnum.none,label:"None",desc:"Do not set selection mode"}};let o={selectionMode:t.SELECTION_MODES,confirmVaultOnCreate:{label:"Confirm Vault on Create.",desc:"Prompt for vault selection when creating new note."},vaultSelectionModeOnCreate:{label:"Vault Selection Mode On Note Creation.",desc:"Whether to smartly guess the vault for the note when creating new note."},leaveTrace:{label:"Leave Trace",desc:"Leaves a reference of the destination note in the source note while using selectionExtract"},bubbleUpCreateNew:{label:"Bubble Up Create New",desc:"Put `Create New` at the top of the lookup result."},fuzzThreshold:{label:"Fuzziness Threshold For Lookup",desc:"Sets the fuzziness level of lookup"}},a={note:o},s={include:{label:"Hierarchies to Include",desc:"Hierarchies to include when opening a random note"},exclude:{label:"hierarchies to Exclude",desc:"Hierarchies not to include when opening a random note"}},u={[i.InsertNoteLinkAliasModeEnum.snippet]:{value:i.InsertNoteLinkAliasModeEnum.snippet,label:"Snippet Mode",desc:"Insert note link as snippet string"},[i.InsertNoteLinkAliasModeEnum.selection]:{value:i.InsertNoteLinkAliasModeEnum.selection,label:"Selection Mode",desc:"Extract selection and use as link alias"},[i.InsertNoteLinkAliasModeEnum.title]:{value:i.InsertNoteLinkAliasModeEnum.title,label:"Title Mode",desc:"Use linked note's title as link alias"},[i.InsertNoteLinkAliasModeEnum.prompt]:{value:i.InsertNoteLinkAliasModeEnum.prompt,label:"Prompt Mode",desc:"Prompt for input to be used as link alias"},[i.InsertNoteLinkAliasModeEnum.none]:{value:i.InsertNoteLinkAliasModeEnum.none,label:"No Alias Mode",desc:"Do not add link alias"}},c={aliasMode:u,enableMultiSelect:{label:"Enable Multi-select",desc:"Enable multi-select when inserting note links"}};t.INSERT_NOTE_INDEX={enableMarker:{label:"Enable Marker",desc:"Insert note index between autogenerated markers"}};let l={nonNoteFile:{label:"Non-note file",desc:"Copy note link settings for non-note files."},aliasMode:{label:"Include a note link",desc:"Whether or not to include alias when copying a note link"}};t.COMMANDS={lookup:a,randomNote:s,insertNoteLink:c,insertNoteIndex:t.INSERT_NOTE_INDEX,copyNoteLink:l,templateHierarchy:{label:"The hierarchy where template notes will be stored",desc:"Default is 'template'"}}},87038:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.CompatUtils=t.CONFIG_TO_MINIMUM_COMPAT_MAPPING=void 0;let i=r(n(96486));t.CONFIG_TO_MINIMUM_COMPAT_MAPPING={1:{clientVersion:"0.0.0"},2:{clientVersion:"0.63.0"},3:{clientVersion:"0.65.0"},4:{clientVersion:"0.70.0"},5:{clientVersion:"0.83.0",softMapping:!0}};class o{static isSoftMapping(e){let n=t.CONFIG_TO_MINIMUM_COMPAT_MAPPING[e.configVersion].softMapping;return!i.default.isUndefined(n)&&n}}t.CompatUtils=o},57352:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.DENDRON_CONFIG=void 0;let r=n(4738),i=n(38680),o=n(24463),a=n(13257),s=n(62093),u=n(90682);t.DENDRON_CONFIG={version:{label:"Version",desc:"Version number for configuration. Automatically set up by plugin during migration."},global:r.GLOBAL,commands:i.COMMANDS,workspace:o.WORKSPACE,preview:a.PREVIEW,publishing:s.PUBLISHING,dev:u.DEV}},90682:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.DEV=void 0,t.DEV={nextServerUrl:{label:"Next Server URL",desc:"Custom URL for the nextjs server."},nextStaticRoot:{label:"Next Static Root",desc:"Root directory for the static assets of the nextjs server."},engineServerPort:{label:"Engine Server Port",desc:"What port to use for the engine server. Defaults to creating on startup."},enableLinkCandidates:{label:"Enable Link Candidates",desc:"Enable displaying and indexing link candidates. Defaults to false."},enablePreviewV2:{label:"Enable Preview V2",desc:"Use preview V2 as the default preview."},enableExportPodV2:{label:"Enable Export Pod V2",desc:"Enable experimental Export V2 command"},enableSelfContainedVaults:{label:"Enable self contained vaults",desc:"If enabled, Dendron will create self contained vaults. Dendron can still read self contained vaults even if this is disabled."},forceWatcherType:{label:"Specify the file watcher type",desc:"plugin: Uses VSCode's builtin watcher, engine: Uses the engine watcher, watching the files directly without VSCode"},enableExperimentalIFrameNoteRef:{label:"Enable iframe note references.",desc:"Uses iframes for note references when publishing a vault using the nextjs export pod."},enableEngineV3:{label:"Enable Engine V3",desc:"Uses engine v3 as default backend"},enableExperimentalInlineNoteRef:{label:"Enable inline note references.",desc:"Uses inline note references in Editor"}}},4738:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.GLOBAL=t.ENABLE_BACK_LINKS=t.ENABLE_CHILD_LINKS=t.ENABLE_HASHES_FOR_FM_TAGS=t.ENABLE_FRONTMATTER_TAGS=t.ENABLE_NOTE_TITLE_FOR_LINK=t.ENABLE_FM_TITLE=t.ENABLE_KATEX=t.ENABLE_PRETTY_REFS=t.ENABLE_MERMAID=void 0;let n=e=>({label:`Enable Mermaid (${e})`,desc:`Enable the use of mermaid for rendering diagrams. (${e})`});t.ENABLE_MERMAID=n;let r=e=>({label:`Enable Pretty Refs (${e})`,desc:`Enable rendering note references as pretty refs. (${e})`});t.ENABLE_PRETTY_REFS=r;let i=e=>({label:`Enable Katex (${e})`,desc:`Enable the use of katex for rendering math. (${e})`});t.ENABLE_KATEX=i;let o=e=>({label:`Enable Frontmatter Title (${e})`,desc:`Insert frontmatter title of note to the body (${e})`});t.ENABLE_FM_TITLE=o;let a=e=>({label:`Enable Note Title for Links (${e})`,desc:`Enable rendering of naked links as the title of the note. (${e})`});t.ENABLE_NOTE_TITLE_FOR_LINK=a;let s=e=>({label:`Enable Frontmatter Tags (${e})`,desc:`Show Frontmatter tags in published site. (${e})`});t.ENABLE_FRONTMATTER_TAGS=s;let u=e=>({label:`Enable Hashes for Frontmatter Tags (${e})`,desc:`Display a '#' symbol in front of frontmatter tags in the tags listing. (${e})`});t.ENABLE_HASHES_FOR_FM_TAGS=u;let c=e=>({label:`Show Child Links (${e})`,desc:`Notes will render child links (${e})`});t.ENABLE_CHILD_LINKS=c;let l=e=>({label:`Show Backlinks (${e})`,desc:`Notes will render backlinks (${e})`});t.ENABLE_BACK_LINKS=l,t.GLOBAL={enableFMTitle:(0,t.ENABLE_FM_TITLE)("global"),enableNoteTitleForLink:(0,t.ENABLE_NOTE_TITLE_FOR_LINK)("global"),enablePrettyRefs:(0,t.ENABLE_PRETTY_REFS)("global"),enableKatex:(0,t.ENABLE_KATEX)("global"),enableChildLinks:(0,t.ENABLE_CHILD_LINKS)("global"),enableBackLinks:(0,t.ENABLE_BACK_LINKS)("global")}},13257:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.PREVIEW=void 0;let r=n(4738);t.PREVIEW={enableFMTitle:(0,r.ENABLE_FM_TITLE)("preview"),enableNoteTitleForLink:(0,r.ENABLE_NOTE_TITLE_FOR_LINK)("preview"),enableFrontmatterTags:(0,r.ENABLE_FRONTMATTER_TAGS)("preview"),enableHashesForFMTags:(0,r.ENABLE_HASHES_FOR_FM_TAGS)("preview"),enablePrettyRefs:(0,r.ENABLE_PRETTY_REFS)("preview"),enableKatex:(0,r.ENABLE_KATEX)("preview"),automaticallyShowPreview:{label:"Automatically Show Preview",desc:"Automatically show preview when opening VSCode and switching between notes."},theme:{label:"The theme to use in the preview.",desc:"The theme to use in the preview. If unset, preview will follow your editor theme for light or dark mode. If you are using a custom theme, make sure to create the CSS file too."}}},62093:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.PUBLISHING=void 0;let r=n(32016),i=n(4738),o={[r.GithubEditViewModeEnum.edit]:{value:r.GithubEditViewModeEnum.edit,label:"Edit",desc:"Links directly to edit mode."},[r.GithubEditViewModeEnum.tree]:{value:r.GithubEditViewModeEnum.tree,label:"Tree",desc:"Links to Github page."}},a={cname:{label:"CNAME",desc:"CNAME used for Github Pages"},enableEditLink:{label:"Enable Edit Link",desc:"Add a link to Github where you can edit the page."},editLinkText:{label:"Edit Link Text",desc:"Text to use for the Github edit link."},editBranch:{label:"Edit Branch",desc:"Branch that the stie is served from."},editViewMode:o,editRepository:{label:"Edit Repository",desc:"URL of the Github repository. This value will be ignored if you are using remote vaults."}},s={id:{label:"ID",desc:"ID of Giscus widget"},host:{label:"Host",desc:"Host of the giscus server if you are self-hosting Giscus."},repo:{label:"Repo",desc:"Repository where the discussion is stored."},repoId:{label:"Repo ID",desc:"ID of the Repository where the discussion is stored."},category:{label:"Category",desc:"Category where the discussion will be searched."},categoryId:{label:"Category ID",desc:"ID of the category where the discussion will be searched."},mapping:{label:"Mapping",desc:"Mapping between the parent page and the discussion."},term:{label:"Term",desc:"Search term to use when searching for the discussion."},strict:{label:"Strict",desc:"Use strict title matching"},reactionsEnabled:{label:"Reactions Enabled",desc:"Enable reactions to the main post of the discussion."},emitMetadata:{label:"Emit Metadata",desc:"Emit the discussion metadata periodically to the parent page."},inputPosition:{label:"Input Position",desc:"Placement of the comment box (`top` or `bottom`)"},lang:{label:"Language",desc:"Language that Giscus will be displayed in."},theme:{label:"Theme",desc:"Theme that Giscus will be displayed in."},loading:{label:"Loading",desc:"Whether the iframe should be loaded lazily or eagerly."}},u={tracking:{label:"Tracking",desc:"Google Analytics tracking number"}},c={url:{label:"URL",desc:"URL of image"},alt:{label:"alt",desc:"alt text for image"}},l={title:{label:"Title",desc:"Set SEO title."},description:{label:"Description",desc:"Set SEO description."},author:{label:"Author",desc:"Set SEO author."},twitter:{label:"Twitter",desc:"set SEO twitter."},image:c};t.PUBLISHING={enableFMTitle:(0,i.ENABLE_FM_TITLE)("publishing"),enableHierarchyDisplay:{label:"Enable Hierarchy Display",desc:"Enable rendering of children link block at the end of the note."},hierarchyDisplayTitle:{label:"Hierarchy Display Title",desc:"Title to display for the children links block."},enableNoteTitleForLink:(0,i.ENABLE_NOTE_TITLE_FOR_LINK)("publishing"),enablePrettyRefs:(0,i.ENABLE_PRETTY_REFS)("publishing"),enableKatex:(0,i.ENABLE_KATEX)("publishing"),assetsPrefix:{label:"Assets Prefix",desc:"Prefix for assets for publishing."},canonicalBaseUrl:{label:"Canonical Base URL",desc:"The base URL used for generating canonical URLs from each page for publishing."},copyAssets:{label:"Copy Assets",desc:"Copy assets from vault to published site."},customHeaderPath:{label:"Custom Header Path",desc:"Path to the custom header file to include in each published notes."},ga:u,siteFaviconPath:{label:"Site Favicon Path",desc:"Path to favicon relative to the workspace."},logoPath:{label:"Logo Path",desc:"Path to the site logo."},siteIndex:{label:"Site Index",desc:"The domain of your `siteHierarhcies` page."},siteHierarchies:{label:"Site Hierarchies",desc:"List of hierarchies to publish."},enableSiteLastModified:{label:"Site Last Modified",desc:"Show last modified timestamp on the site"},siteRootDir:{label:"Site Root Dir",desc:"Where your site will be published, relative to the Dendron workspace."},siteUrl:{label:"Site URL",desc:"URL of the site without trailing slash."},enableBackLinks:(0,i.ENABLE_BACK_LINKS)("publishing"),enableFrontmatterTags:(0,i.ENABLE_FRONTMATTER_TAGS)("publishing"),enableHashesForFMTags:(0,i.ENABLE_HASHES_FOR_FM_TAGS)("publishing"),enableRandomlyColoredTags:{label:"Enable Randomly Colored Tags",desc:"Display randomly generated colors for tags."},hierarchy:{label:"Hierarchy",desc:"Control publication on a per-hierarchy basis"},duplicateNoteBehavior:{label:"Duplicate Note Behavior",desc:"How duplicate notes are handled when publishing a multi-vault workspace."},writeStubs:{label:"Write Stubs",desc:"Write stub notes to disk when publishing. If this is set to fale, stub notes will be published with a different id each time."},seo:l,github:a,segmentKey:{label:"Segment Key",desc:"Value of the Segment API key."},cognitoUserPoolId:{label:"Cognito User Pool ID",desc:"Value of Cognito user pool ID."},cognitoClientId:{label:"Cognito Client ID",desc:"Value of Cognito client ID."},enablePrettyLinks:{label:"Enable Pretty Links",desc:"Note links are published without the .html file extension."},theme:{value:void 0,label:"The theme to use when publishing.",desc:"The theme to use when publishing the site. If you are using a custom theme, make sure to create the CSS file too."},enableTaskNotes:{value:!0,label:"Enable special formatting for task notes.",desc:"Task notes will have checkboxes, owner information and more displayed on links leading to them. This applies both in preview and publishing."},siteBanner:{label:"Add a custom banner to the site",desc:"EXPERIMENTAL: do not use"},giscus:s,sidebarPath:{label:"Path to sidebar config file",desc:"Define custom sidebar",value:void 0},searchMode:{label:"Default search mode for publishing",desc:"Default behavior of search bar in published site"}}},24463:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.WORKSPACE=void 0;let r=n(60330),i=n(69426),o=n(38680),a={[r.NoteAddBehaviorEnum.childOfDomain]:{value:"childOfDomain",label:"Child of Domain",desc:"Note is added as the child of domain of the current hierarchy"},[r.NoteAddBehaviorEnum.childOfDomainNamespace]:{value:"childOfDomainNamespace",label:"Child of Domain Namespace",desc:"Note is added as child of the namespace of the current domain if it has a namespace. Otherwise added as child of domain."},[r.NoteAddBehaviorEnum.childOfCurrent]:{value:"childOfCurrent",label:"Child of Current",desc:"Note is added as a child of the current open note"},[r.NoteAddBehaviorEnum.asOwnDomain]:{value:"asOwnDomain",label:"as Own Domain",desc:"Note is created under the domain specified by journal name value"}},s={zoomSpeed:{label:"Zoom Speed",desc:"The speed at which the graph zooms in and out. Lower is slower, higher is faster."},createStub:{label:"Create Stub",desc:"When enabled, create a note if it hasn't been created already when clicked on a graph node"}},u={dailyDomain:{label:"Daily Domain",desc:"Domain where the journal notes are created"},dailyVault:{label:"Daily Vault",desc:"Name of vault where daily journal should be in"},name:{label:"Journal Name",desc:"Name used for journal notes"},dateFormat:{label:"Date Format",desc:"Date format used for journal notes"},addBehavior:a},c={name:{label:"Scratch Name",desc:"Name used for scratch notes"},dateFormat:{label:"Date Format",desc:"Date format used for scratch notes"},addBehavior:a},l={name:{label:"Task name",desc:"Name used for task notes"},dateFormat:{label:"Date Format",desc:"Date format used for task notes"},addBehavior:a,prioritySymbols:{label:"Priority symbols",desc:'Maps symbols in the "priority" frontmatter property to a symbol, word, or sentence. This will be used to display that priority to the users.'},statusSymbols:{label:"Status symbols",desc:'Maps symbols in the "status" frontmatter property to a symbol, word, or sentence. This will be used to display that status to the users.'},todoIntegration:{label:"Todo integration",desc:'Adds a "TODO: ..." property to the frontmatter. This allows easier interoperability with other extensions like Todo Tree.'},createTaskSelectionType:Object.fromEntries(Object.entries(o.SELECTION_MODES).map(([e,t])=>(t.desc=`When using Create Task Note, ${t.desc.toLowerCase()}`,[e,t]))),taskCompleteStatus:{label:"When is a task complete",desc:"If the note state is set to any of these values, the note is considered to be done."}};t.WORKSPACE={dendronVersion:{label:"Dendron version",desc:"Dendron version. Set up by plugin."},workspaces:{label:"Workspaces",desc:"Workspaces"},seeds:{label:"Seeds",desc:"Seeds"},vaults:{label:"Vaults",desc:"Vaults"},hooks:{label:"Hooks",desc:"Hooks"},journal:u,scratch:c,task:l,graph:s,disableTelemetry:{label:"Disable Telemetry",desc:"Disable telemetry that collects usage data to help improve Dendron."},enableAutoCreateOnDefinition:{label:"Enable auto create on definition",desc:"Automatically create note when looking up definition"},enableXVaultWikiLink:{label:"Enable cross-vault wikilink",desc:"Enable cross-vault wikilinks"},enableRemoteVaultInit:{label:"Enable Remote Vault Init",desc:"Enable initializing remote vaults on startup."},workspaceVaultSyncMode:i.VAULT_SYNC_MODES,enableAutoFoldFrontmatter:{label:"Enable Auto Fold Frontmatter",desc:"Enable Automatically folding frontmatter block when opening a new note."},enableEditorDecorations:{label:"Enable Editor Decorations",desc:"Enable editor decorations, which highlight wikilinks, add colors for hashtags and more as you write your code."},maxPreviewsCached:{label:"Max Preview Cached",desc:"Maximum number of rendered previews to cache."},maxNoteLength:{label:"Max Note Length",desc:"Maximum number of characters in a note. Notes with characters exceeding this number will have some Dendron features disabled."},feedback:{label:"Feedback",desc:"Enable feedback widget."},apiEndpoint:{label:"API Endpoint",desc:"Endpoint for backend API functionality."},enableUserTags:{label:"Enable user tags",desc:"Enable user tags, which allows @name to link to the note user.name"},enableHashTags:{label:"Enable hashtags",desc:"Enable hashtags, which allows #word to link to the note tags.word"},enableFullHierarchyNoteTitle:{label:"Enable FullHierarchyNoteTitle mode",desc:"When enabled, the full hierarchy position of a note is used to generate the note title"},metadataStore:{label:"Storage engine for metadata",desc:"values: sqlite|json"}}},11135:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.FOOTNOTE_REF_CLASS=t.FOOTNOTE_DEF_CLASS=void 0,t.FOOTNOTE_DEF_CLASS="fn",t.FOOTNOTE_REF_CLASS="fnref"},67949:function(e,t,n){"use strict";var r,i,o,a,s,u,c,l,f,d,p,h,m,v,g,y,b,E,w=this&&this.__createBinding||(Object.create?function(e,t,n,r){void 0===r&&(r=n);var i=Object.getOwnPropertyDescriptor(t,n);(!i||("get"in i?!t.__esModule:i.writable||i.configurable))&&(i={enumerable:!0,get:function(){return t[n]}}),Object.defineProperty(e,r,i)}:function(e,t,n,r){void 0===r&&(r=n),e[r]=t[n]}),x=this&&this.__exportStar||function(e,t){for(var n in e)"default"===n||Object.prototype.hasOwnProperty.call(t,n)||w(t,e,n)};Object.defineProperty(t,"__esModule",{value:!0}),t.GLOBAL_STATE_KEYS=t.DENDRON_VSCODE_CONFIG_KEYS=t.DENDRON_EMOJIS=t.USERS_HIERARCHY=t.USERS_HIERARCHY_BASE=t.TAGS_HIERARCHY=t.TAGS_HIERARCHY_BASE=t.RESERVED_KEYS=t.ERROR_SEVERITY=t.USER_MESSAGES=t.ERROR_STATUS=t.FOLDERS=t.CONSTANTS=t.ThemeTarget=t.ThemeType=t.getStatusCode=t.getReasonPhrase=t.StatusCodes=t.ReasonPhrases=void 0,x(n(11135),t),x(n(5815),t),x(n(12240),t),x(n(87038),t);var _=n(42809);Object.defineProperty(t,"ReasonPhrases",{enumerable:!0,get:function(){return _.ReasonPhrases}}),Object.defineProperty(t,"StatusCodes",{enumerable:!0,get:function(){return _.StatusCodes}}),Object.defineProperty(t,"getReasonPhrase",{enumerable:!0,get:function(){return _.getReasonPhrase}}),Object.defineProperty(t,"getStatusCode",{enumerable:!0,get:function(){return _.getStatusCode}});let S="/doc/root";(r=d=t.ThemeType||(t.ThemeType={})).LIGHT="light",r.DARK="dark",(i=p=t.ThemeTarget||(t.ThemeTarget={})).PRISM="PRISM",t.CONSTANTS={ROOT_PATH:S,ALL_QUERY:"**/*",DENDRON_WS_NAME:"dendron.code-workspace",DENDRON_SERVER_PORT:".dendron.port",DENDRON_WS_META:".dendron.ws",DENDRON_CONFIG_FILE:"dendron.yml",DENDRON_LOCAL_CONFIG_FILE:"dendronrc.yml",DENDRON_SEED_CONFIG:"seed.yml",DENDRON_DELIMETER:"dendron://",DENDRON_USER_FILE:".dendron.user",DENDRON_CACHE_FILE:".dendron.cache.json",DENDRON_ID:".dendron.uuid",DENDRON_NO_TELEMETRY:".dendron.no-telemetry",DENDRON_TELEMETRY:".dendron.telemetry",DENDRON_HOOKS_BASE:"hooks",DENDRON_USER_NOTE_TRAITS_BASE:"noteTraits",DENDRON_LOCAL_SITE_PORT:8080,DENDRON_INIT_VERSION:"0.0.0",DENDRON_DEFAULT_MAX_NOTE_LENGTH:204800,CUSTOM_THEME_CSS:"custom.css"},t.FOLDERS={DEPENDENCIES:"dependencies",LOCAL_DEPENDENCY:"localhost",NOTES:"notes",ASSETS:"assets",DENDRON_SYSTEM_ROOT:".dendron",SAVED_TELEMETRY:"saved-telemetry"},(o=h=t.ERROR_STATUS||(t.ERROR_STATUS={})).BACKUP_FAILED="backup_failed",o.NODE_EXISTS="node_exists",o.NO_SCHEMA_FOUND="no_schema_found",o.NO_ROOT_SCHEMA_FOUND="no_root_schema_found",o.MISSING_SCHEMA="missing_schema",o.NO_ROOT_NOTE_FOUND="no_root_note_found",o.BAD_PARSE_FOR_SCHEMA="bad_parse_for_schema",o.NO_PARENT_FOR_NOTE="no_parent_for_note",o.CANT_DELETE_ROOT="no_delete_root_node",o.BAD_PARSE_FOR_NOTE="bad_parse_for_note",o.ENGINE_NOT_SET="no_engine_set",o.NOT_AUTHORIZED="not_authorized",o.DOES_NOT_EXIST="does_not_exist_error",o.INVALID_CONFIG="invalid_config",o.INVALID_STATE="invalid_state",o.UNKNOWN="unknown",o.CONTENT_NOT_FOUND="content_not_found",o.WRITE_FAILED="write_failed",o.DELETE_FAILED="delete_failed",o.RENAME_FAILED="rename_failed",(a=m=t.USER_MESSAGES||(t.USER_MESSAGES={})).UNKNOWN="unknown",(s=v=t.ERROR_SEVERITY||(t.ERROR_SEVERITY={})).MINOR="minor",s.FATAL="fatal",(u=g=t.RESERVED_KEYS||(t.RESERVED_KEYS={})).GIT_NOTE_PATH="gitNotePath",u.GIT_NO_LINK="gitNoLink",t.TAGS_HIERARCHY_BASE="tags",t.TAGS_HIERARCHY=`${t.TAGS_HIERARCHY_BASE}.`,t.USERS_HIERARCHY_BASE="user",t.USERS_HIERARCHY=`${t.USERS_HIERARCHY_BASE}.`,(c=y=t.DENDRON_EMOJIS||(t.DENDRON_EMOJIS={})).SEEDLING="\uD83C\uDF31",c.OKAY="✅",c.NOT_OKAY="❎",(l=b=t.DENDRON_VSCODE_CONFIG_KEYS||(t.DENDRON_VSCODE_CONFIG_KEYS={})).ENABLE_SELF_CONTAINED_VAULTS_WORKSPACE="dendron.enableSelfContainedVaultWorkspace",(f=E=t.GLOBAL_STATE_KEYS||(t.GLOBAL_STATE_KEYS={})).ANONYMOUS_ID="telemetry.anonymousId"},12240:function(e,t){"use strict";var n,r;Object.defineProperty(t,"__esModule",{value:!0}),t.InvalidFilenameReason=t.MODIFIER_DESCRIPTIONS=void 0,t.MODIFIER_DESCRIPTIONS={selection2link:"Highlighted text will be turned into a wikilink to the newly created note",selectionExtract:"Highlighted text will be copied over to the new note and a note reference will be left in the original note",selection2Items:"Wikilinks in highlighted text will be used to create selectable items in lookup",journal:"",scratch:"",task:"",horizontal:"Open lookup result to the side",directChildOnly:"Limits lookup depth to one level and filters out stub notes",multiSelect:"Select multiple notes at once",copyNoteLink:"Add selected notes to the clipboard as wikilinks"},(r=n=t.InvalidFilenameReason||(t.InvalidFilenameReason={})).EMPTY_HIERARCHY="Hierarchies cannot be empty strings",r.LEADING_OR_TRAILING_WHITESPACE="Hierarchies cannot contain leading or trailing whitespaces",r.ILLEGAL_CHARACTER="Hierarchy strings cannot contain parentheses, commas, or single quotes"},5815:function(e,t,n){"use strict";var r,i,o,a,s,u;Object.defineProperty(t,"__esModule",{value:!0}),t.BacklinkPanelSortOrder=t.getWebEditorViewEntry=t.getWebTreeViewEntry=t.isWebViewEntry=t.TREE_VIEWS=t.EDITOR_VIEWS=t.DendronTreeViewKey=t.DendronEditorViewKey=void 0;let c=n(25903);(a=r=t.DendronEditorViewKey||(t.DendronEditorViewKey={})).CONFIGURE="dendron.configure",a.NOTE_GRAPH="dendron.graph-note",a.SCHEMA_GRAPH="dendron.graph-schema",a.NOTE_PREVIEW="dendron.note-preview",a.SEED_BROWSER="dendron.seed-browser",(s=i=t.DendronTreeViewKey||(t.DendronTreeViewKey={})).SAMPLE_VIEW="dendron.sample",s.TREE_VIEW="dendron.treeView",s.BACKLINKS="dendron.backlinks",s.CALENDAR_VIEW="dendron.calendar-view",s.LOOKUP_VIEW="dendron.lookup-view",s.TIP_OF_THE_DAY="dendron.tip-of-the-day",s.HELP_AND_FEEDBACK="dendron.help-and-feedback",s.GRAPH_PANEL="dendron.graph-panel",s.RECENT_WORKSPACES="dendron.recent-workspaces",t.EDITOR_VIEWS={[r.NOTE_PREVIEW]:{desc:"Note Preview",label:"Note Preview",bundleName:"DendronNotePreview",type:"webview"},[r.CONFIGURE]:{desc:"Dendron Configuration",label:"Dendron Configuration",bundleName:"DendronConfigure",type:"webview"},[r.NOTE_GRAPH]:{desc:"Note Graph",label:"Note Graph",bundleName:"DendronGraphPanel",type:"webview"},[r.SCHEMA_GRAPH]:{desc:"Schema Graph",label:"Schema Graph",bundleName:"DendronSchemaGraphPanel",type:"webview"},[r.SEED_BROWSER]:{desc:"Seed Registry",label:"Seed Registry",bundleName:"SeedBrowser",type:"webview"}},t.TREE_VIEWS={[i.SAMPLE_VIEW]:{desc:"A view used for prototyping",label:"Sample View",bundleName:"SampleComponent",type:"webview"},[i.TREE_VIEW]:{desc:"Tree View",label:"Tree View",type:"nativeview"},[i.BACKLINKS]:{desc:"Shows all backlinks to the currentnote",label:"Backlinks",type:"nativeview"},[i.CALENDAR_VIEW]:{desc:"Calendar View",label:"Calendar View",type:"webview",bundleName:"DendronCalendarPanel"},[i.LOOKUP_VIEW]:{desc:"Lookup View",label:"Lookup View",type:"webview",bundleName:"DendronLookupPanel"},[i.TIP_OF_THE_DAY]:{desc:"Feature Showcase",label:"Feature Showcase",type:"webview",bundleName:"DendronTipOfTheDay"},[i.RECENT_WORKSPACES]:{desc:"Recent Dendron Workspaces",label:"Recent Dendron Workspaces",type:"nativeview"},[i.HELP_AND_FEEDBACK]:{desc:"Help and Feedback",label:"Help and Feedback",type:"nativeview"},[i.GRAPH_PANEL]:{desc:"Graph Panel (side)",label:"Graph Panel",bundleName:"DendronSideGraphPanel",type:"webview"}};let l=e=>"webview"===e.type;t.isWebViewEntry=l;let f=e=>{let n=t.TREE_VIEWS[e];if((0,t.isWebViewEntry)(n))return n;throw c.ErrorFactory.createInvalidStateError({message:`${e} is not valid webview key`})};t.getWebTreeViewEntry=f;let d=e=>{let n=t.EDITOR_VIEWS[e];if((0,t.isWebViewEntry)(n))return n;throw c.ErrorFactory.createInvalidStateError({message:`${e} is not valid webview key`})};t.getWebEditorViewEntry=d,(u=o=t.BacklinkPanelSortOrder||(t.BacklinkPanelSortOrder={})).PathNames="PathNames",u.LastUpdated="LastUpdated"},13079:function(e,t,n){"use strict";var r=this&&this.__createBinding||(Object.create?function(e,t,n,r){void 0===r&&(r=n);var i=Object.getOwnPropertyDescriptor(t,n);(!i||("get"in i?!t.__esModule:i.writable||i.configurable))&&(i={enumerable:!0,get:function(){return t[n]}}),Object.defineProperty(e,r,i)}:function(e,t,n,r){void 0===r&&(r=n),e[r]=t[n]}),i=this&&this.__setModuleDefault||(Object.create?function(e,t){Object.defineProperty(e,"default",{enumerable:!0,value:t})}:function(e,t){e.default=t}),o=this&&this.__importStar||function(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)"default"!==n&&Object.prototype.hasOwnProperty.call(e,n)&&r(t,e,n);return i(t,e),t},a=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.SchemaUtils=t.NoteUtils=t.DNodeUtils=void 0;let s=a(n(9675)),u=a(n(96486)),c=a(n(61254)),l=a(n(1864)),f=a(n(2891)),d=n(17373),p=n(67949),h=n(8115),m=n(95120),v=n(52973),g=n(60494),y=n(85390),b=n(83694),E=n(49500),w=o(n(69606));class x{static addChild(e,t){e.children=Array.from(new Set(e.children).add(t.id)),t.parent=e.id}static removeChild(e,t){e.children=u.default.reject(e.children,e=>e===t.id)}static create(e){let t=u.default.defaults(e,{updated:v.Time.now().toMillis(),created:v.Time.now().toMillis(),id:(0,b.genUUID)(),desc:"",links:[],anchors:{},children:[],parent:null,body:"",data:{},title:e.title||_.genTitle(e.fname)}),n=["stub","schema","schemaStub","custom","color","tags","image",];return u.default.forEach(n,n=>{e[n]&&(t[n]=e[n])}),t}static basename(e,t){t&&e.endsWith(".md")&&(e=e.slice(void 0,-3));let[n,...r]=e.split(".");return u.default.isEmpty(r)?n:r.slice(-1)[0]}static dirName(e){return e.split(".").slice(0,-1).join(".")}static domainName(e){return e.split(".")[0]}static fname(e){return l.default.basename(e,".md")}static enhancePropForQuickInput({props:e,schema:t,vaults:n,wsRoot:r}){let i=E.VaultUtils.matchVault({vaults:n,wsRoot:r,vault:e.vault});if(!i)throw Error("enhancePropForQuickInput, no vault found");let o=E.VaultUtils.getName(i),a=` (${o})`;if("note"===e.type){let s=x.isRoot(e),u=s?"root":e.fname,c=e.desc,l=_.genSchemaDesc(e,t)+a,f={...e,label:u,detail:c,description:l};return f}{let d=x.isRoot(e)?"root":e.id,p=e.desc,h={...e,label:d,detail:p,description:a};return h}}static enhancePropForQuickInputV3(e){let{alwaysShow:t}=u.default.defaults(e,{alwaysShow:!1});return{...this.enhancePropForQuickInput(e),alwaysShow:t}}static enhancePropForQuickInputV4(e){let{props:t,schema:n}=e,r=E.VaultUtils.getName(e.props.vault),i=`(${r})`;if("note"===e.props.type){let o=x.isRoot(t),a=o?"root":t.fname,s=t.desc,u=_.genSchemaDesc(t,n)+i,c={...t,label:a,detail:s,description:u};return c}{let l=x.isRoot(t)?"root":t.id,f=t.desc,d={...t,label:l,detail:f,description:i};return d}}static findClosestParent(e,t,n){let{vault:r}=n,i=x.dirName(e);if(""===i){let o=m.NoteDictsUtils.findByFname({fname:"root",noteDicts:t,vault:r})[0];if(u.default.isUndefined(o))throw new h.DendronError({message:`no root found for ${e}`});return o}let a=m.NoteDictsUtils.findByFname({fname:i,noteDicts:t,vault:r})[0];return a&&!(null==n?void 0:n.noStubs)||a&&(null==n?void 0:n.noStubs)&&!a.stub&&!a.schemaStub?a:x.findClosestParent(i,t,n)}static async findClosestParentWithEngine(e,t,n){let{vault:r,excludeStub:i}=n,o=x.dirName(e);if(""===o){let a=await t.findNotesMeta({fname:"root",vault:r});if(0===a.length)throw new h.DendronError({message:`no root found for ${e}`});return a[0]}let s=await t.findNotesMeta({fname:o,vault:r,excludeStub:i});return s.length>0?s[0]:x.findClosestParentWithEngine(o,t,n)}static getCustomProps(e){let t=[...Object.values(g.DNodeExplicitPropsEnum),...Object.values(g.DNodeImplicitPropsEnum),];return u.default.omit(e,t)}static getDepth(e){return this.getFNameDepth(e.fname)}static getFNameDepth(e){return"root"===e?0:e.split(".").length}static getFullPath(e){let t=l.default.isAbsolute(e.vault.fsPath)?E.VaultUtils.getRelPath(e.vault):l.default.join(e.wsRoot,E.VaultUtils.getRelPath(e.vault));return l.default.join(t,e.basename)}static isRoot(e){return"root"===e.fname}static getLeafName(e){return u.default.split(e.fname,".").pop()}}t.DNodeUtils=x;class _{static getNoteTraits(e){return u.default.get(e,"traitIds",[])}static addOrUpdateParents(e){let{note:t,noteDicts:n,createStubs:r}=e,i=[];if(x.isRoot(t))return i;let o=x.dirName(t.fname).toLowerCase(),a=m.NoteDictsUtils.findByFname({fname:o,noteDicts:n,vault:t.vault})[0];if(a){let s={...a};x.addChild(a,t),i.push({status:"update",prevNote:s,note:a})}if(!a&&!r){let u={status:p.ERROR_STATUS.NO_PARENT_FOR_NOTE,msg:JSON.stringify({fname:t.fname})};throw h.DendronError.createFromStatus(u)}if(!a){let c=x.findClosestParent(t.fname,n,{vault:t.vault}),l={...c},f=_.createStubs(c,t);f.forEach(e=>{i.push({status:"create",note:e})}),i.push({status:"update",prevNote:l,note:c})}return i}static addSchema(e){let{note:t,schema:n,schemaModule:r}=e;t.schema={schemaId:n.id,moduleId:r.root.id}}static create(e){let t=u.default.defaults(e,{schemaStub:!1});return x.create({...t,type:"note"})}static async createWithSchema({noteOpts:e,engine:t}){let n=_.create(e),r=await S.matchPath({notePath:e.fname,engine:t});if(r){let{schema:i,schemaModule:o}=r;_.addSchema({note:n,schemaModule:o,schema:i})}return n}static async updateStubWithSchema(e){let{stubNote:t,engine:n}=e,r=u.default.omit(t,"stub"),i=await S.matchPath({notePath:r.fname,engine:n});if(i){let{schema:o,schemaModule:a}=i;_.addSchema({note:r,schemaModule:a,schema:o})}return r}static createRoot(e){return x.create({...e,type:"note",fname:"root",id:(0,b.genUUID)()})}static createStubs(e,t){let n=[],r=e.fname;x.isRoot(e)&&(r="");let i=t.fname,o=i.indexOf(r)+r.length,a=u.default.trimStart(i.slice(o),".").split("."),s=r,c=e;return a.slice(0,-1).forEach(e=>{u.default.isEmpty(s)?s=e:s+=`.${e}`;let r=_.create({fname:s,stub:!0,vault:t.vault});n.push(r),x.addChild(c,r),c=r}),x.addChild(c,t),n}static createWikiLink(e){let{note:t,anchor:n,useVaultPrefix:r,alias:i}=e,o=null==i?void 0:i.mode,a=null==i?void 0:i.value,s=null==i?void 0:i.tabStopIndex,{fname:u,vault:c}=t,l=t.title;if(t.fname.startsWith(p.TAGS_HIERARCHY)){let f=t.fname.split(p.TAGS_HIERARCHY)[1];return`#${f}`}let d="";if(n){let{value:h,type:m}=n,v;"header"===m?(l=h,v=(0,y.getSlugger)().slug(h)):v=h,d=`#${v}`}let g=r?`${p.CONSTANTS.DENDRON_DELIMETER}${E.VaultUtils.getName(c)}/`:"",b="";switch(o){case"snippet":b=`\${${s}:alias}|`;break;case"title":b=`${l}|`;break;case"value":b=""!==a?`${a}|`:""}let w=`[[${b}${g}${u}${d}]]`;return w}static fromSchema({fname:e,schemaModule:t,schemaId:n,vault:r}){let i=t.schemas[n];return _.create({fname:e,schemaStub:!0,desc:i.desc,schema:{moduleId:t.root.id,schemaId:n},vault:r})}static genSchemaDesc(e,t){let n=[];if(e.title!==e.fname&&n.push(e.title),(e.stub||e.schemaStub)&&n.push("$(gist-new)"),e.schema){if(!t)throw Error("schema mod required");let r=t.root,i=t.schemas[e.schema.schemaId];n.push(`$(repo) ${r.title||r.id}`),r.id!==e.schema.schemaId&&(n.push("$(breadcrumb-separator)"),i.data.isIdAutoGenerated?i.title!==i.id?n.push(i.title):n.push(i.data.pattern):n.push(i.title||i.id))}return n.join(" ")}static genJournalNoteTitle(e){let{fname:t,journalName:n}=e,r=t.indexOf(n),i=_.genTitle(t);if(r<0)return i;let o=t.slice(r+n.length+1);return o.match(/\d\d\d\d\.\d\d\.\d\d$/)?o.replace(/\./g,"-"):i}static updateNoteLocalConfig(e,t,n){return e.config||(e.config={}),e.config[t]?u.default.merge(e.config[t],n):e.config[t]=n,e}static genTitle(e){let t=x.basename(e,!0);return u.default.toLower(e)===e?(e=t.replace(/-/g," "),(0,f.default)(e)):t}static genTitleFromFullFname(e){let t=e.replace(/\./g," ");return(0,f.default)(t)}static getNotesWithLinkTo({note:e,notes:t}){let n=t.map(t=>u.default.find(t.links,t=>{var n,r;return(null===(r=null===(n=t.to)||void 0===n?void 0:n.fname)||void 0===r?void 0:r.toLowerCase())===e.fname.toLowerCase()})?t:void 0);return u.default.reject(n,u.default.isUndefined)}static getFullPath({note:e,wsRoot:t}){try{let n=x.getFullPath({wsRoot:t,vault:e.vault,basename:e.fname+".md"});return n}catch(r){throw new h.DendronError({message:"bad path",payload:{note:e,wsRoot:t}})}}static getURI({note:e,wsRoot:t}){return d.URI.file(this.getFullPath({note:e,wsRoot:t}))}static getNoteWithParents({note:e,notes:t,sortDesc:n=!0}){let r=[];if(!e||u.default.isUndefined(e))return[];for(;null!==e.parent;){r.push(e);try{let i=t[e.parent];if(u.default.isUndefined(i))throw"note is undefined";e=i}catch(o){throw Error(`no parent found for note ${e.id}`)}}return r.push(e),n&&u.default.reverse(r),r}static getPathUpTo(e,t){return e.split(".").slice(0,t).join(".")}static getRoots(e){return u.default.filter(u.default.values(e),x.isRoot)}static hydrate({noteRaw:e,noteHydrated:t,opts:n}){let r=u.default.pick(t,["parent","children"]);return(null==n?void 0:n.keepBackLinks)&&(e.links=t.links.filter(e=>"backlink"===e.type)),{...e,...r}}static match({notePath:e,pattern:t}){return(0,c.default)(e,t)}static isDefaultTitle(e){return e.title===_.genTitle(e.fname)}static normalizeFname(e){return(e=u.default.trim(e)).endsWith(".md")&&(e=e.slice(void 0,-3)),e}static isNoteProps(e){let t=["id","title","desc","links","anchors","fname","type","updated","created","parent","children","data","body","vault",];return u.default.isObject(e)&&t.every(t=>t in e&&(0,y.isNotUndefined)(e[t]))}static serializeExplicitProps(e){let t=Object.fromEntries(Object.entries(e).filter(([e,t])=>(0,y.isNotUndefined)(t)));if(!this.isNoteProps(t))throw new h.DendronError({message:`Note is missing some properties that are required. Found properties: ${JSON.stringify(e)}`});let n={...t};t.traits&&(n={...t,traitIds:t.traits.map(e=>e)});let r=u.default.pick(n,[...Object.values(g.DNodeExplicitPropsEnum),"stub",]),{custom:i}=t,o={...r,...i};return o}static serialize(e,t){let n=e.body,r=["parent","children"];(null==t?void 0:t.excludeStub)&&r.push("stub");let i=u.default.omit(_.serializeExplicitProps(e),r);i.title=u.default.toString(i.title),i.id=u.default.toString(i.id);let o=s.default.stringify(n||"",i);return"\n"!==n.slice(-1)?o.slice(0,-1):o}static toLogObj(e){let{fname:t,id:n,children:r,vault:i,parent:o}=e;return{fname:t,id:n,children:r,vault:i,parent:o}}static toNoteLoc(e){let{fname:t,id:n,vault:r}=e;return{fname:t,id:n,vaultName:E.VaultUtils.getName(r)}}static toNoteLocString(e){let t=this.toNoteLoc(e),n=[];return t.vaultName&&n.push(`dendron://${t.vaultName}/`),n.push(t.fname),t.id&&n.push(` (${t.id})`),n.join("")}static uri2Fname(e){return l.default.basename(e.fsPath,".md")}static validate(e){return u.default.isUndefined(e)?{error:h.DendronError.createFromStatus({status:p.ERROR_STATUS.BAD_PARSE_FOR_NOTE,message:"NoteProps is undefined"})}:u.default.isUndefined(e.vault)?{error:h.DendronError.createFromStatus({status:p.ERROR_STATUS.BAD_PARSE_FOR_NOTE,message:"note vault is undefined"})}:u.default.isString(e.title)?{data:!0}:{error:h.DendronError.createFromStatus({status:p.ERROR_STATUS.BAD_PARSE_FOR_NOTE,message:"note title not set as string"})}}static validateFname(e){for(let t of e.split(".")){let n=""===t;if(n)return{isValid:!1,reason:p.InvalidFilenameReason.EMPTY_HIERARCHY};let r=t.startsWith(" ")||t.endsWith(" ");if(r)return{isValid:!1,reason:p.InvalidFilenameReason.LEADING_OR_TRAILING_WHITESPACE}}let i=/[(),']/,o=u.default.isNull(e.match(i));return o?{isValid:!0}:{isValid:!1,reason:p.InvalidFilenameReason.ILLEGAL_CHARACTER}}static cleanFname(e){let{fname:t,replaceWith:n}=e,r=t.replace(/[(),'']/g,void 0===n?" ":n),i=r.split("."),o=i.map(e=>u.default.trim(e," ")).filter(e=>""!==e).join(".");return o}static color(e){let{fname:t,note:n}=e;return n&&n.color?{color:n.color,type:"configured"}:{color:(0,y.randomColor)(t),type:"generated"}}static async ancestors(e){let{fname:t,engine:n,includeSelf:r,nonStubOnly:i}=e,{vault:o}=e,a=t.split("."),s=(await n.findNotesMeta({fname:t,vault:o}))[0];if(s&&r&&!(i&&s.stub))return s;if("root"!==t){for(;a.length>1;)if((s=(await n.findNotesMeta({fname:(a=a.slice(void 0,a.length-1)).join("."),vault:o}))[0])&&!(i&&s.stub))return s;if(s)return o||(o=s.vault),s=(await n.findNotesMeta({fname:"root",vault:o}))[0]}}static isNote(e){return e.fsPath.endsWith(".md")}static genIdForFile({filePath:e,wsRoot:t}){let n=(0,y.normalizeUnixPath)(l.default.relative(t,e));return`${this.FILE_ID_PREFIX}${n}`}static isFileId(e){return e.startsWith(this.FILE_ID_PREFIX)}static createForFile(e){let t=this.genIdForFile(e);return this.create({fname:l.default.basename(e.filePath),id:t,vault:E.VaultUtils.createForFile(e),body:e.contents})}static createForFake(e){return this.create({fname:e.fname,id:`${this.FAKE_ID_PREFIX}${e.id}`,vault:e.vault,body:e.contents})}}t.NoteUtils=_,_.RE_FM=/^---(.*)^---/ms,_.RE_FM_UPDATED=/^updated:\s+(\d+)$/m,_.RE_FM_CREATED=/^created:.*$/m,_.RE_FM_UPDATED_OR_CREATED=/^(?(updated|created): *)(?[0-9]+)$/,_.FILE_ID_PREFIX="file-",_.FAKE_ID_PREFIX="fake-";class S{static createFromSchemaRaw(e){let t=["namespace","pattern","template",],n=u.default.omit(e,t),r=u.default.pick(e,t);this.processUntypedTemplate(r);let i=x.create({...u.default.defaults(n,{title:n.id,data:r,fname:"__empty"}),type:"schema"});return e.isIdAutoGenerated&&(i.data.isIdAutoGenerated=!0),i}static createFromSchemaOpts(e){var t;let n=["namespace","pattern","template",],r=u.default.omit(e,n),i=u.default.pick(e,n);this.processUntypedTemplate(i);let o=e.vault,a=x.create({vault:o,...u.default.defaults(r,{title:r.id,data:i,fname:"__empty"}),type:"schema"});return(null===(t=e.data)||void 0===t?void 0:t.isIdAutoGenerated)&&(a.data.isIdAutoGenerated=!0),a}static processUntypedTemplate(e){if(u.default.isString(e.template)){let t={id:e.template,type:"note"};e.template=t}}static createModule(e){return e}static createModuleProps(e){let{fname:t,vault:n}=e,r=S.createFromSchemaOpts({id:`${t}`,fname:t,parent:"root",created:1,updated:1,children:[],vault:n});return{version:1,fname:t,root:r,schemas:{[r.id]:r},imports:[],vault:n}}static createRootModule(e){let t=S.createFromSchemaOpts({id:"root",title:"root",fname:"root.schema",parent:"root",children:[],...e});return{version:1,imports:[],schemas:[t]}}static createRootModuleProps(e,t,n){let r=S.createFromSchemaOpts({id:"root",title:"root",fname:"root",parent:"root",children:[],vault:t,...n});return{version:1,imports:[],schemas:{root:r},fname:e,root:r,vault:t}}static enhanceForQuickInput({props:e,vaults:t}){var n;let r=t.length>1?` (${l.default.basename(null===(n=e.vault)||void 0===n?void 0:n.fsPath)})`:"",i=x.isRoot(e.root)?"root":e.root.id,o=e.root.desc,a={...e.root,fname:e.fname,label:i,detail:o,description:r,vault:e.vault};return a}static getModuleRoot(e){let t=u.default.find(e.schemas,{parent:"root"});if(!t){let n=u.default.find(e.schemas,{parent:null,id:"root"});if(n)return n;throw h.DendronError.createFromStatus({status:p.ERROR_STATUS.NO_ROOT_SCHEMA_FOUND})}return t}static getPath({root:e,fname:t}){return l.default.join(e,t+".schema.yml")}static async doesSchemaExist({id:e,engine:t}){let n=await t.getSchema(e);return!u.default.isUndefined(n.data)}static async getSchemaFromNote({note:e,engine:t}){if(e.schema)return(await t.getSchema(e.schema.moduleId)).data}static matchDomain(e,t,n){let r=n[e.fname];if(r){let i=r.schemas[r.root.id];return S.matchDomainWithSchema({noteCandidates:[e],notes:t,schemaCandidates:[i],schemaModule:r})}}static matchDomainWithSchema(e){let{noteCandidates:t,schemaCandidates:n,notes:r,schemaModule:i,matchNamespace:o}=u.default.defaults(e,{matchNamespace:!0}),a=u.default.map(t,e=>S.matchNotePathWithSchemaAtLevel({notePath:e.fname,schemas:n,schemaModule:i,matchNamespace:o})).filter(e=>!u.default.isUndefined(e));a.map(e=>{let{schema:n,notePath:a}=e,s=u.default.find(t,{fname:a});_.addSchema({note:s,schema:n,schemaModule:i});let c=!(n.data.namespace&&o),l=c?n.children.map(e=>i.schemas[e]):[n],f=s.children.map(e=>r[e]);return S.matchDomainWithSchema({noteCandidates:f,schemaCandidates:l,notes:r,schemaModule:i,matchNamespace:c})})}static async matchPath(e){let{notePath:t}=e,n=x.domainName(t),r=await e.engine.getSchema(n);if(r.data){let i=r.data.schemas[r.data.root.id];return n.length===t.length?{schema:i,notePath:t,namespace:i.data.namespace||!1,schemaModule:r.data}:S.matchPathWithSchema({notePath:t,matched:"",schemaCandidates:[i],schemaModule:r.data})}}static findSchemaFromModule(e){let{notePath:t,schemaModule:n}=e,r=x.domainName(t),i=n.schemas[n.root.id];return r.length===t.length?{schema:i,notePath:t,namespace:i.data.namespace||!1,schemaModule:n}:S.matchPathWithSchema({notePath:t,matched:"",schemaCandidates:[i],schemaModule:n})}static matchPathWithSchema({notePath:e,matched:t,schemaCandidates:n,schemaModule:r,matchNamespace:i=!0}){let o=(e,t)=>{let n=u.default.indexOf(e,".",t.length+1);return n>0?e.slice(0,n):e},a=o(e,t),s=S.matchNotePathWithSchemaAtLevel({notePath:a,schemas:n,schemaModule:r,matchNamespace:i});if(s){let{schema:c,namespace:l}=s;if(e===a)return{schemaModule:r,schema:c,namespace:l,notePath:e};let f=!(c.data.namespace&&i),d=f?c.children.map(e=>r.schemas[e]):[c];return S.matchPathWithSchema({notePath:e,matched:a,schemaCandidates:d,schemaModule:r,matchNamespace:f})}}static matchNotePathWithSchemaAtLevel({notePath:e,schemas:t,schemaModule:n,matchNamespace:r=!0}){let i=e.replace(/\./g,"/"),o=!1,a=u.default.find(t,e=>{var t;let a=S.getPatternRecursive(e,n.schemas);return(null===(t=null==e?void 0:e.data)||void 0===t?void 0:t.namespace)&&r?(o=!0,(0,c.default)(i,a.slice(0,-2))):(0,c.default)(i,a)});if(a)return{schema:a,namespace:o,notePath:e,schemaModule:n}}static serializeSchemaProps(e){let t=u.default.pick(e,["id","children",]),n=["title","desc",];u.default.forEach(n,n=>{e[n]&&(t[n]=e[n])});let r=e.data;return(null==e?void 0:e.parent)==="root"&&(t.parent="root"),{...t,...r}}static isSchemaUri(e){return e.fsPath.endsWith(".schema.yml")}static serializeModuleProps(e){let{version:t,imports:n,schemas:r}=e,i={version:t,imports:[],schemas:u.default.values(r).map(e=>S.serializeSchemaProps(e))};return n&&(i.imports=n),w.default.dump(i,{schema:w.JSON_SCHEMA})}}t.SchemaUtils=S,S.getPattern=(e,t)=>{var n,r;let i=(null===(n=null==e?void 0:e.data)||void 0===n?void 0:n.pattern)||e.id,o=(null===(r=null==e?void 0:e.data)||void 0===r?void 0:r.namespace)&&!(null==t?void 0:t.isNotNamespace)?`${i}/*`:i;return o},S.getPatternRecursive=(e,t)=>{let n=S.getPattern(e);if(u.default.isNull(e.parent))return n;let r=t[e.parent];if(!r||"root"===r.id)return n;{let i=S.getPatternRecursive(r,t);return[i,n].join("/")}},S.hasSimplePattern=(e,t)=>{let n=S.getPattern(e,t);return!u.default.isNull(n.match(/^[a-zA-Z0-9_-]*$/))}},68461:function(e,t,n){"use strict";var r=this&&this.__createBinding||(Object.create?function(e,t,n,r){void 0===r&&(r=n);var i=Object.getOwnPropertyDescriptor(t,n);(!i||("get"in i?!t.__esModule:i.writable||i.configurable))&&(i={enumerable:!0,get:function(){return t[n]}}),Object.defineProperty(e,r,i)}:function(e,t,n,r){void 0===r&&(r=n),e[r]=t[n]}),i=this&&this.__exportStar||function(e,t){for(var n in e)"default"===n||Object.prototype.hasOwnProperty.call(t,n)||r(t,e,n)};Object.defineProperty(t,"__esModule",{value:!0}),i(n(23789),t),i(n(59711),t)},23789:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.string2Note=void 0;let i=r(n(9675)),o=r(n(69606)),a=r(n(96486)),s=n(13079),u=n(60494),c=n(85390);function l({content:e,fname:t,vault:n,calculateHash:r}){let l={engines:{yaml:{parse:e=>o.default.load(e),stringify:e=>o.default.dump(e)}}},{data:f,content:d}=(0,i.default)(e,l);(null==f?void 0:f.title)&&(f.title=a.default.toString(f.title)),(null==f?void 0:f.id)&&(f.id=a.default.toString(f.id));let p=s.DNodeUtils.getCustomProps(f),h=r?(0,c.genHash)(e):void 0,m=s.DNodeUtils.create({...a.default.omit(f,Object.values(u.DNodeImplicitPropsEnum)),custom:p,fname:t,body:d,type:"note",vault:n,contentHash:h});return m}t.string2Note=l},59711:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.vault2Path=void 0;let r=n(17373),i=n(49500);function o({vault:e,wsRoot:t}){return r.Utils.joinPath(t,i.VaultUtils.getRelPath(e))}t.vault2Path=o},10068:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0})},89249:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.EngineV3Base=void 0;let i=r(n(96486)),o=n(10081),a=n(67949),s=n(13079),u=n(8115),c=n(85390),l=n(49500);class f{constructor(e){this.noteStore=e.noteStore,this.queryStore=e.queryStore,this.logger=e.logger,this.vaults=e.vaults,this.wsRoot=e.wsRoot}async getNote(e){return this.noteStore.get(e)}async getNoteMeta(e){return this.noteStore.getMetadata(e)}async bulkGetNotes(e){let t=await this.noteStore.bulkGet(e),n=t.flatMap(e=>e.error).filter(c.isNotUndefined);return{error:n.length>0?new u.DendronCompositeError(n):void 0,data:t.flatMap(e=>e.data).filter(c.isNotUndefined)}}async bulkGetNotesMeta(e){let t=await this.noteStore.bulkGetMetadata(e),n=t.flatMap(e=>e.error).filter(c.isNotUndefined);return{error:n.length>0?new u.DendronCompositeError(n):void 0,data:t.flatMap(e=>e.data).filter(c.isNotUndefined)}}async findNotes(e){let t=await this.noteStore.find(e);return t.data?t.data:[]}async findNotesMeta(e){let t=await this.noteStore.findMetaData(e);return t.data?t.data:[]}async bulkWriteNotes(e){let t=await Promise.all(e.notes.map(t=>this.writeNote(t,e.opts))),n=t.flatMap(e=>e.error).filter(c.isNotUndefined);return{error:n.length>0?new u.DendronCompositeError(n):void 0,data:t.flatMap(e=>e.data).filter(c.isNotUndefined)}}async deleteNote(e,t){let n="DEngine:deleteNote";if("root"===e)throw new u.DendronError({message:"",status:a.ERROR_STATUS.CANT_DELETE_ROOT});let r=[],o=await this.noteStore.getMetadata(e);if(o.error)return{error:new u.DendronError({status:a.ERROR_STATUS.DOES_NOT_EXIST,message:`Unable to delete ${e}: Note does not exist`})};let c=i.default.merge(o.data,{body:""});this.logger.info({ctx:n,noteToDelete:c,opts:t,id:e});let l=s.NoteUtils.toLogObj(c);if(!c.parent)return{error:new u.DendronError({status:a.ERROR_STATUS.NO_PARENT_FOR_NOTE,message:`No parent found for ${c.fname}`})};let f=await this.noteStore.get(c.parent);if(f.error)return{error:new u.DendronError({status:a.ERROR_STATUS.NO_PARENT_FOR_NOTE,message:`Unable to delete ${c.fname}: Note's parent does not exist in engine: ${c.parent}`,innerError:f.error})};let d=f.data,p={...c};if(i.default.isEmpty(c.children))for(;d.stub;){if(r.push({note:d,status:"delete"}),!d.parent)return{error:new u.DendronError({status:a.ERROR_STATUS.NO_PARENT_FOR_NOTE,message:`No parent found for ${d.fname}`})};let h=await this.noteStore.get(d.parent);if(!h.data)return{error:new u.DendronError({status:a.ERROR_STATUS.NO_PARENT_FOR_NOTE,message:`Unable to delete ${c.fname}: Note ${null==d?void 0:d.fname}'s parent does not exist in engine: ${d.parent}`})};p={...d},d=h.data}else{this.logger.info({ctx:n,noteAsLog:l,msg:"keep as stub"});let m=s.NoteUtils.create({...i.default.omit(c,["id","links","body"]),stub:!0});s.DNodeUtils.addChild(d,m),(r=r.concat(await this.updateChildrenWithNewParent(c,m))).push({note:m,status:"create"})}let v={...d};this.logger.info({ctx:n,noteAsLog:l,msg:"delete from parent"}),s.DNodeUtils.removeChild(d,p),r.push({prevNote:v,note:d,status:"update"});let g=(null==t?void 0:t.metaOnly)?await this.noteStore.deleteMetadata(e):await this.noteStore.delete(e);if(g.error)return{error:new u.DendronError({message:`Unable to delete note ${e}`,severity:a.ERROR_SEVERITY.MINOR,payload:g.error})};let y=await Promise.all(c.links.map(e=>this.removeBacklink(e)));return(r=r.concat(y.flat())).push({note:c,status:"delete"}),await this.queryStore.updateNotesIndex(r),await this.updateNoteMetadataStore(r),this.logger.info({ctx:n,msg:"exit",changed:r.map(e=>s.NoteUtils.toLogObj(e.note))}),{data:r}}async queryNotes(e){let{qs:t,vault:n,onlyDirectChildren:r,originalQS:o}=e;((null==n?void 0:n.selfContained)==="true"||(null==n?void 0:n.selfContained)==="false")&&(n.selfContained="true"===n.selfContained);let a=await this.queryStore.queryNotes(t,{onlyDirectChildren:r,originalQS:o});if(a.isErr())return[];let s=a.value;if(0===s.length)return[];let u=await this.noteStore.bulkGet(s.map(e=>e.id)),c;return c=u.filter(e=>i.default.isUndefined(e.error)).map(e=>e.data),i.default.isUndefined(n)||(c=c.filter(e=>l.VaultUtils.isEqual(n,e.vault,this.wsRoot))),c}async updateChildrenWithNewParent(e,t){let n=[],r=await this.noteStore.bulkGet(e.children);return r.forEach(e=>{if(e.data){let r=e.data,i={...r};s.DNodeUtils.addChild(t,r),n.push({prevNote:i,note:r,status:"update"})}}),n}async updateNoteMetadataStore(e){return Promise.all(e.map(e=>{switch(e.status){case"delete":return this.noteStore.deleteMetadata(e.note.id);case"create":case"update":return this.noteStore.writeMetadata({key:e.note.id,noteMeta:e.note});default:return{data:""}}}))}async addBacklink(e){var t,n,r;if(!(null===(t=e.to)||void 0===t?void 0:t.fname))return[];let a=o.BacklinkUtils.createFromDLink(e);if(a){let s=(null===(n=e.to)||void 0===n?void 0:n.vaultName)?l.VaultUtils.getVaultByName({vname:null===(r=e.to)||void 0===r?void 0:r.vaultName,vaults:this.vaults}):void 0,u=await this.noteStore.find({fname:e.to.fname,vault:s});if(u.data)return Promise.all(u.data.map(async e=>{let t=i.default.cloneDeep(e);return o.BacklinkUtils.addBacklinkInPlace({note:e,backlink:a}),{prevNote:t,note:e,status:"update"}}))}return[]}async removeBacklink(e){var t,n,r;if(!(null===(t=e.to)||void 0===t?void 0:t.fname))return[];let a=o.BacklinkUtils.createFromDLink(e);if(a){let s=(null===(n=e.to)||void 0===n?void 0:n.vaultName)?l.VaultUtils.getVaultByName({vname:null===(r=e.to)||void 0===r?void 0:r.vaultName,vaults:this.vaults}):void 0,u=await this.noteStore.find({fname:e.to.fname,vault:s});if(u.data)return Promise.all(u.data.map(async e=>{let t=i.default.cloneDeep(e);return o.BacklinkUtils.removeBacklinkInPlace({note:e,backlink:a}),{prevNote:t,note:e,status:"update"}}))}return[]}}t.EngineV3Base=f},26305:function(e,t,n){"use strict";var r=this&&this.__createBinding||(Object.create?function(e,t,n,r){void 0===r&&(r=n);var i=Object.getOwnPropertyDescriptor(t,n);(!i||("get"in i?!t.__esModule:i.writable||i.configurable))&&(i={enumerable:!0,get:function(){return t[n]}}),Object.defineProperty(e,r,i)}:function(e,t,n,r){void 0===r&&(r=n),e[r]=t[n]}),i=this&&this.__exportStar||function(e,t){for(var n in e)"default"===n||Object.prototype.hasOwnProperty.call(t,n)||r(t,e,n)};Object.defineProperty(t,"__esModule",{value:!0}),i(n(10068),t),i(n(89249),t)},13987:function(e,t,n){"use strict";var r=n(83454),i=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.RuntimeUtils=t.env=t.setEnv=t.setStageIfUndefined=t.getOrThrow=t.getStage=void 0;let o=i(n(96486)),a=n(9445);function s(){let e=(null==r?void 0:r.env)||{},t=e.stage,n=e.NODE_ENV,i=e.STAGE,o=e.REACT_APP_STAGE,a=e.BUILD_STAGE,s=e.GITHUB_ACTIONS;return{stage:t,NODE_ENV:n,STAGE:i,REACT_APP_STAGE:o,BUILD_STAGE:a,GITHUB_ACTIONS:s}}function u(){let{stage:e,NODE_ENV:t,STAGE:n,REACT_APP_STAGE:r,BUILD_STAGE:i}=s(),o=r||i||e||n||t||"production";return"development"===o&&(o="dev"),"production"===o&&(o="prod"),o||(o="dev"),o}function c(e,t,n){n=o.default.defaults(n,{shouldThrow:!0});let r=e[t];if(o.default.isUndefined(r)&&n.shouldThrow)throw Error(`no ${String(t)} in ${JSON.stringify(e)}`);return r}function l(e){let{stage:t,NODE_ENV:n,STAGE:i,REACT_APP_STAGE:a,BUILD_STAGE:u}=s(),c=a||u||t||i||n;if(o.default.isUndefined(c))try{r.env.stage=e}catch{}}function f(e,t){r.env[e]=t}function d(e,t){let n=r.env[e];if(n)return n;let i=u();return c((a.config||{})[i]||{},e,t)}t.getStage=u,t.getOrThrow=c,t.setStageIfUndefined=l,t.setEnv=f,t.env=d;class p{static isRunningInTestOrCI(){return this.isRunningInsideCI()||this.isRunningInsideTest()}static isRunningInsideTest(){return"test"===u()}static isRunningInsideCI(){return!!o.default.get(s(),"GITHUB_ACTIONS")}}t.RuntimeUtils=p},8115:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.isTSError=t.ErrorUtils=t.ErrorFactory=t.assertInvalidState=t.assertUnreachable=t.ErrorMessages=t.error2PlainObject=t.stringifyError=t.IllegalOperationError=t.DendronServerError=t.errorsList=t.DendronCompositeError=t.DendronError=void 0;let i=r(n(96486)),o=n(67949);class a extends Error{constructor({message:e,status:t,payload:n,severity:r,code:o,innerError:a}){super(e),this.name="DendronError",this.status=t||"unknown",this.severity=r,this.message=e||"",(null==n?void 0:n.message)&&(null==n?void 0:n.stack)?this.payload=JSON.stringify({msg:n.message,stack:n.stack}):i.default.isString(n)?this.payload=n:this.payload=JSON.stringify(n||{}),this.code=o,this.innerError=a,a&&(this.stack=a.stack)}stringifyForHumanReading(){return this.message}payloadStringify(){return JSON.stringify(this.payload)}stringifyForLogs(){let{severity:e,code:t,message:n}=this,r={severity:e,code:t,message:n};return this.innerError&&(r.innerError=this.innerError),this.payload&&(r.payload=this.payloadStringify()),JSON.stringify(r)}stringifyForTelemetry(){return this.stringifyForLogs()}get isFatal(){return this.severity===o.ERROR_SEVERITY.FATAL}static isDendronError(e){return(null==e?void 0:e.message)!==void 0}static createPlainError(e){return(0,t.error2PlainObject)({...e,name:"DendronError"})}static createFromStatus({status:e,...t}){return new a({name:"DendronError",message:e,status:e,...t})}}t.DendronError=a;class s extends Error{constructor(e){super(),this.payload=e.map(e=>(0,t.error2PlainObject)(e)),this.errors=e;let n=void 0!==i.default.find(e,e=>e.severity===o.ERROR_SEVERITY.FATAL),r=0===i.default.filter(e,e=>e.severity!==o.ERROR_SEVERITY.MINOR).length;if(n?this.severity=o.ERROR_SEVERITY.FATAL:r&&(this.severity=o.ERROR_SEVERITY.MINOR),1===this.errors.length)this.message=this.errors[0].message;else if(this.errors.length>1){let a=["Multiple errors: "],s=this.errors.map(e=>` - ${e.message}`);this.message=a.concat(s).join("\n")}}static isDendronCompositeError(e){if(e.payload&&i.default.isString(e.payload))try{e.payload=JSON.parse(e.payload)}catch{}return i.default.isArray(e.payload)&&e.payload.every(a.isDendronError)}}function u(e){return s.isDendronCompositeError(e)?e.payload:a.isDendronError(e)?[e]:[]}t.DendronCompositeError=s,t.errorsList=u;class c extends a{}t.DendronServerError=c;class l extends a{}function f(e){return JSON.stringify(e,Object.getOwnPropertyNames(e))}t.IllegalOperationError=l,t.stringifyError=f;let d=e=>{let t={};return Object.getOwnPropertyNames(e).forEach(n=>{t[n]=e[n]}),t};t.error2PlainObject=d;class p{static formatShouldNeverOccurMsg(e){return`${void 0===e?"":e+" "}This error should never occur! Please report a bug if you have encountered this.`}}function h(e){throw new a({message:p.formatShouldNeverOccurMsg()})}function m(e){throw new a({status:o.ERROR_STATUS.INVALID_STATE,message:e})}t.ErrorMessages=p,t.assertUnreachable=h,t.assertInvalidState=m;class v{static create404Error({url:e}){return new a({message:`resource ${e} does not exist`,severity:o.ERROR_SEVERITY.FATAL})}static createUnexpectedEventError({event:e}){return new a({message:`unexpected event: '${this.safeStringify(e)}'`})}static createInvalidStateError({message:e}){return new a({status:o.ERROR_STATUS.INVALID_STATE,message:e})}static createSchemaValidationError({message:e}){return new a({message:e,severity:o.ERROR_SEVERITY.MINOR})}static safeStringify(e){try{return JSON.stringify(e)}catch(t){return`Failed to stringify the given object. Due to '${t.message}'`}}static wrapIfNeeded(e){return e instanceof a?e:new a(e instanceof Error?{message:e.message,innerError:e}:{message:this.safeStringify(e)})}}t.ErrorFactory=v;class g{static isAxiosError(e){return i.default.has(e,"isAxiosError")}static isDendronError(e){return"DendronError"===i.default.get(e,"name","")}static isErrorResp(e){return"error"in e}}function y(e){return void 0!==e.message&&void 0!==e.name}t.ErrorUtils=g,t.isTSError=y},23165:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.getVaultFromRepo=t.getDependencyPathWithRemote=t.remoteUrlToDependencyPath=t.getRepoNameFromURL=t.getOwnerAndRepoFromURL=t.getGithubAccessTokenUrl=t.git2Github=t.getGithubEditUrl=t.githubUrl=t.canShowGitLink=void 0;let i=r(n(96486)),o=r(n(1864)),a=n(67949),s=n(85390),u=n(49500),c=e=>{let{txt:t,note:n}=e;i.default.templateSettings.interpolate=/{{([\s\S]+?)}}/g;let r=n.fname.replace(/\./g,"/");return i.default.template(t)({noteHierarchy:r})};function l(e){let{config:t,note:n}=e;if(i.default.isBoolean((n.custom||{})[a.RESERVED_KEYS.GIT_NO_LINK])&&n.custom[a.RESERVED_KEYS.GIT_NO_LINK])return!1;let r=s.ConfigUtils.getGithubConfig(t);return!!r&&i.default.every([r.enableEditLink,r.editLinkText,r.editRepository,r.editBranch,r.editViewMode,])}function f(e){let t=d(e);return t}function d(e){let{note:t,config:n,wsRoot:r}=e,o=t.vault,l=s.ConfigUtils.getVaults(n),f=r?u.VaultUtils.matchVault({wsRoot:r,vault:o,vaults:l}):u.VaultUtils.matchVaultV2({vault:o,vaults:l}),d=i.default.get(f,"remote.url",!1),h=s.ConfigUtils.getGithubConfig(n),m=null==h?void 0:h.editRepository;if(f&&d)return i.default.join([p(d),null==h?void 0:h.editViewMode,null==h?void 0:h.editBranch,t.fname+".md",],"/");let v=i.default.join([u.VaultUtils.getRelPath(o),t.fname+".md"],"/");return i.default.has(null==t?void 0:t.custom,a.RESERVED_KEYS.GIT_NOTE_PATH)&&(v=c({txt:t.custom[a.RESERVED_KEYS.GIT_NOTE_PATH],note:t})),i.default.join([m,null==h?void 0:h.editViewMode,null==h?void 0:h.editBranch,v,],"/")}function p(e){let[t,n]=e.split(":"),[r,i]=n.split("/");return`https://github.com/${r}/${o.default.basename(i,".git")}`}function h(e){let{remotePath:t,accessToken:n}=e,r;return`https://${n}:x-oauth-basic@github.com/${r=t.startsWith("https://")?t.split("/").slice(-2).join("/"):e.remotePath.split(":").slice(-1)[0]}`}function m(e){let[t,n]=e.split("/").slice(-2);return{owner:t,repo:n}}function v(e){return o.default.basename(e,".git")}function g({vaultName:e,url:t}){var n,r,s,u;if(void 0===t)return a.FOLDERS.LOCAL_DEPENDENCY;let c=/^(https?:\/\/)(?[^/:]+)(:[0-9]+)?\/(?.+?)(\.git)?$/.exec(t);if((null===(n=null==c?void 0:c.groups)||void 0===n?void 0:n.domain)&&(null===(r=null==c?void 0:c.groups)||void 0===r?void 0:r.path))return o.default.join(c.groups.domain,o.default.normalize(c.groups.path));let l=/^([^@]+@)(?[^:/]+):([0-9]+\/)?\/?(?.+?)(\.git)?$/.exec(t);if((null===(s=null==l?void 0:l.groups)||void 0===s?void 0:s.domain)&&(null===(u=null==l?void 0:l.groups)||void 0===u?void 0:u.path))return o.default.join(l.groups.domain,o.default.normalize(l.groups.path));let f=i.default.findLast(t.split(/[/\\]/),e=>e.length>0);return f||e}function y({vault:e,remote:t}){var n,r;let s=null!==(r=null!==(n=e.name)&&void 0!==n?n:i.default.findLast(e.fsPath.split(/[/\\]/),e=>e.length>0))&&void 0!==r?r:e.fsPath;return t?o.default.join(a.FOLDERS.DEPENDENCIES,g({vaultName:s,url:t})):o.default.join(a.FOLDERS.DEPENDENCIES,a.FOLDERS.LOCAL_DEPENDENCY,s)}function b(e){let{repoPath:t,wsRoot:n}=e;return{fsPath:o.default.relative(n,t),remote:{type:"git",url:e.repoUrl}}}t.canShowGitLink=l,t.githubUrl=f,t.getGithubEditUrl=d,t.git2Github=p,t.getGithubAccessTokenUrl=h,t.getOwnerAndRepoFromURL=m,t.getRepoNameFromURL=v,t.remoteUrlToDependencyPath=g,t.getDependencyPathWithRemote=y,t.getVaultFromRepo=b},41948:function(e,t){"use strict";function n(e){return Promise.resolve({...e})}async function r(e,t){let n=[];for(let r of e)n.push(await t(r));return n}async function i(e,t){return Promise.all(e.map(e=>t(e)))}Object.defineProperty(t,"__esModule",{value:!0}),t.asyncLoop=t.asyncLoopOneAtATime=t.makeResponse=void 0,t.makeResponse=n,t.asyncLoopOneAtATime=r,t.asyncLoop=i},25903:function(e,t,n){"use strict";var r=this&&this.__createBinding||(Object.create?function(e,t,n,r){void 0===r&&(r=n);var i=Object.getOwnPropertyDescriptor(t,n);(!i||("get"in i?!t.__esModule:i.writable||i.configurable))&&(i={enumerable:!0,get:function(){return t[n]}}),Object.defineProperty(e,r,i)}:function(e,t,n,r){void 0===r&&(r=n),e[r]=t[n]}),i=this&&this.__setModuleDefault||(Object.create?function(e,t){Object.defineProperty(e,"default",{enumerable:!0,value:t})}:function(e,t){e.default=t}),o=this&&this.__exportStar||function(e,t){for(var n in e)"default"===n||Object.prototype.hasOwnProperty.call(t,n)||r(t,e,n)},a=this&&this.__importStar||function(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)"default"!==n&&Object.prototype.hasOwnProperty.call(e,n)&&r(t,e,n);return i(t,e),t},s=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.minimatch=t.DateTime=t.axios=t.GitUtils=t.YamlUtils=void 0;let u=s(n(9669));t.axios=u.default;let c=n(99490);Object.defineProperty(t,"DateTime",{enumerable:!0,get:function(){return c.DateTime}});let l=s(n(61254));t.minimatch=l.default,o(n(73497),t),o(n(13079),t),o(n(41948),t),o(n(13987),t),o(n(18381),t),o(n(83694),t),o(n(67949),t),o(n(8115),t),o(n(52973),t),o(n(85390),t),o(n(92296),t),o(n(48786),t),o(n(49500),t),o(n(89472),t),o(n(61835),t),o(n(57984),t),o(n(60494),t),o(n(29304),t),o(n(498),t),o(n(75058),t),o(n(80251),t),o(n(9445),t),o(n(60339),t),o(n(35108),t),o(n(47671),t),o(n(95120),t),o(n(40822),t),o(n(45115),t),o(n(20937),t),o(n(26305),t),o(n(68461),t),o(n(19046),t),o(n(70458),t),o(n(57761),t),o(n(10081),t),o(n(27626),t),t.YamlUtils=a(n(94852)),t.GitUtils=a(n(23165))},92296:function(e,t){"use strict";function n(e){return -1!==e.indexOf("|")}Object.defineProperty(t,"__esModule",{value:!0}),t.LINK_CONTENTS=t.ALIAS_NAME=t.LINK_NAME_NO_SPACES=t.LINK_NAME=t.ALIAS_DIVIDER=t.isAlias=void 0,t.isAlias=n,t.ALIAS_DIVIDER="|",t.LINK_NAME="[^#\\|>\\]\\[\\n]+",t.LINK_NAME_NO_SPACES="[^#\\|>\\]\\[\\n\\s]+",t.ALIAS_NAME="[^\\|>\\]\\[\\n]+",t.LINK_CONTENTS=`((?${t.ALIAS_NAME}(?=\\|))\\|)?(?${t.LINK_NAME})?(#(?${t.LINK_NAME}))?(>(?.*))?`},95120:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.NoteFnameDictUtils=t.NoteDictsUtils=void 0;let i=r(n(96486)),o=n(85390),a=n(49500);class s{static createNoteDicts(e){let t=this.createNotePropsByIdDict(e),n=u.createNotePropsByFnameDict(t);return{notesById:t,notesByFname:n}}static createNotePropsByIdDict(e){let t={};for(let n of e)t[n.id]=n;return t}static findByFname({fname:e,noteDicts:t,vault:n,skipCloneDeep:r}){let{notesById:s,notesByFname:u}=t,c=(0,o.cleanName)(e),l=u[c];if(!l)return[];let f=l.map(e=>s[e]).filter(o.isNotUndefined);return(n&&(f=f.filter(e=>a.VaultUtils.isEqualV2(e.vault,n))),r)?f:i.default.cloneDeep(f)}static delete(e,t){let{notesById:n,notesByFname:r}=t;return!i.default.isUndefined(n[e.id])&&(delete n[e.id],u.delete(e,r))}static add(e,t){let{notesById:n,notesByFname:r}=t,i=n[e.id];if(i){if((0,o.cleanName)(i.fname)===(0,o.cleanName)(e.fname)){n[e.id]=e;return}u.delete(i,r)}n[e.id]=e,u.add(e,r)}}t.NoteDictsUtils=s;class u{static createNotePropsByFnameDict(e){let t={};return i.default.values(e).forEach(e=>u.add(e,t)),t}static add(e,t){let n=(0,o.cleanName)(e.fname),r=t[n];i.default.isUndefined(r)&&(r=[]),r.push(e.id),t[n]=r}static delete(e,t){let n=(0,o.cleanName)(e.fname),r=t[n];return!i.default.isUndefined(r)&&(i.default.pull(r,e.id),0===r.length?delete t[n]:t[n]=r,!0)}static merge(e,t){let n=i.default.cloneDeep(e);return i.default.entries(t).forEach(([e,t])=>{n[e]?n[e]=n[e].concat(t):n[e]=t}),n}}t.NoteFnameDictUtils=u},57761:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.parse=t.schemaForType=t.z=void 0;let r=n(78754);Object.defineProperty(t,"z",{enumerable:!0,get:function(){return r.z}});let i=n(85390),o=n(8115),a=()=>e=>e;t.schemaForType=a;let s=(e,t,n)=>{let r=e.safeParse(t);return r.success?(0,i.ok)(r.data):(0,i.err)(new o.DendronError({message:[...n?[n]:[],JSON.stringify(r.error.issues,null,2),...e.description?[`Schema:${e.description}`]:[],].join("\n")}))};t.parse=s},60339:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.SchemaCreationUtils=void 0;let i=r(n(69606)),o=r(n(96486));class a{static getBodyForTokenizedMatrix({topLevel:e,tokenizedMatrix:t}){var n,r,a;for(let s=0;se.pattern===f.pattern))c=null===(r=c.children)||void 0===r?void 0:r.filter(e=>e.pattern===f.pattern)[0];else{let d;d=f.template?{pattern:f.pattern,template:f.template}:{pattern:f.pattern},f.desc&&(d.desc=f.desc),null===(a=c.children)||void 0===a||a.push(d),c=d}}}return i.default.dump({version:1,imports:[],schemas:[e]})}}t.SchemaCreationUtils=a},70458:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.getSidebar=t.parseSidebarConfig=t.processSidebar=t.DisabledSidebar=t.DefaultSidebar=void 0;let i=r(n(96486)),o=n(85390),a=n(57761),s=n(8115),u=n(67949),c=a.z.literal("note"),l=a.z.literal("autogenerated"),f=a.z.literal("category"),d=a.z.string(),p=a.z.object({type:c,id:d,label:a.z.string()}),h=a.z.object({type:l,id:d}),m=a.z.object({type:c,id:d}),v=m,g=a.z.lazy(()=>a.z.object({type:f,label:a.z.string(),items:a.z.array(a.z.lazy(()=>b)),link:v}).refine(e=>!(0===e.items.length&&!e.link),e=>({message:`Sidebar category '${e.label}' has neither any subitem nor a link. This makes this item not able to link to anything.`}))),y=a.z.lazy(()=>a.z.object({type:f,label:a.z.string(),items:a.z.array(a.z.lazy(()=>E)),link:v})),b=a.z.union([g,p,h,]);a.z.array(b);let E=a.z.union([y,p]),w="root";t.DefaultSidebar=[{type:"autogenerated",id:w},],t.DisabledSidebar=[];let x=({item:e,notes:t})=>{function n(){let n=e.id===w;if(n)return Object.values(t).filter(e=>{let{fname:t}=e;if("root"===t)return!1;let n=t.split(".");return 1===n.length}).map(({id:e})=>e);let r=t[e.id];if(!r)throw s.DendronError.createFromStatus({message:`SidebarItem \`${e.id}\` does not exist`,status:u.ERROR_STATUS.DOES_NOT_EXIST});return r.children}function r(e){return e.map(e=>{let n=t[e],i=o.PublishUtils.getPublishFM(n),{children:a}=n,s=a.length>0,u=s,c=!s;if(!n||i.nav_exclude)return;let l={position:i.nav_order,fname:n.fname,reverse:"reverse"===i.sort_order};if(c)return{type:"note",id:n.id,label:n.title,...l};if(u){let f=i.nav_exclude_children||i.has_collection;return{type:"category",label:n.title,items:f?[]:r(a),link:{type:"note",id:n.id},...l}}}).filter(e=>Boolean(e))}function a(e){let t=e.map(e=>{if("category"===e.type){let t=a(e.items);return e.reverse&&t.reverse(),{...e,items:t}}return e}),n=i.default.sortBy(t,["position","fname",]);return n.map(({position:e,fname:t,reverse:n,...r})=>r)}let c=n();return i.default.flow(r,a)(c)};function _(e,{notes:t,duplicateNoteBehavior:n}){function r(e){return x({item:e,notes:t})}function a(e){function r(e){var r;let o=[null!==(r=t[e])&&void 0!==r?r:Object.values(t).filter(t=>t.fname===e),].flat(),a=()=>{var e;let t=new Map(o.map(e=>{var t;return[null!==(t=e.vault.name)&&void 0!==t?t:e.vault.fsPath,e,]}));return null===(e=A(n))||void 0===e?void 0:e.filter(e=>t.has(e)).map(e=>t.get(e))},c=o.length>1,l=i.default.first(c&&a()||o);if(!l)throw s.DendronError.createFromStatus({message:`SidebarItem \`${e}\` does not exist`,status:u.ERROR_STATUS.DOES_NOT_EXIST});return l.id}let{type:o}=e;switch(o){case"category":{let{link:a}=e;return{...e,link:{type:"note",id:r(a.id)}}}case"autogenerated":return{...e,id:e.id===w?e.id:r(e.id)};case"note":return{...e,id:r(e.id)};default:(0,s.assertUnreachable)(o)}}function c(e){let t=a(e),{type:n}=t;switch(n){case"category":return[{...t,items:t.items.map(c).flat()},];case"autogenerated":return r(t);case"note":return[t];default:(0,s.assertUnreachable)(n)}}let l=(0,o.fromThrowable)(c,e=>s.DendronError.isDendronError(e)?e:s.DendronError.createFromStatus({message:"Error when processing sidebarItem",status:u.ERROR_STATUS.INVALID_CONFIG}));return e.andThen(e=>o.Result.combine(e.map(l))).map(e=>e.flat())}function S(e){if(Array.isArray(e)){let t=e.map(e=>{let{type:t}=e;switch(t){case"note":return(0,a.parse)(p,e,`SidebarParseError in ${JSON.stringify(e)}`);case"autogenerated":return(0,a.parse)(h,e,`SidebarParseError in ${JSON.stringify(e)}`);case"category":return(0,a.parse)(b,e,`SidebarParseError in ${JSON.stringify(e)}`);default:return(0,o.err)(new s.DendronError({message:`Invalid sidebar item type in \`${JSON.stringify(e)}\`. Valid are \`${c.value}\`, \`${f.value}\` or \`${l.value}\`.`}))}});return o.Result.combine(t)}return(0,o.err)(new s.DendronError({message:"Sidebar object is not an array"}))}function C(e,t){return _(S(e),t)}function A(e){var t;if(Array.isArray(null==e?void 0:e.payload))return[...new Set(null==e?void 0:e.payload)];let n=null===(t=null==e?void 0:e.payload.vault)||void 0===t?void 0:t.name;if(n)return[n]}t.processSidebar=_,t.parseSidebarConfig=S,t.getSidebar=C},3991:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.FuseQueryStore=void 0;let i=r(n(96486)),o=n(42013),a=n(13079),s=n(8115),u=n(498);class c{constructor(e){this.fuseEngine=new u.FuseEngine({fuzzThreshold:i.default.defaults(e,{fuzzThreshold:.2}).fuzzThreshold})}addSchemaToIndex(e){return o.ResultAsync.fromPromise(Promise.resolve(this.fuseEngine.schemaIndex.add(a.SchemaUtils.getModuleRoot(e))),e=>new s.DendronError({message:"issue adding schema to index",innerError:e}))}queryNotes(e,t){let n=this.fuseEngine.queryNote({qs:e,...t});return o.ResultAsync.fromSafePromise(Promise.resolve(n))}querySchemas(e){let t=this.fuseEngine.querySchema({qs:e});return o.ResultAsync.fromSafePromise(Promise.resolve(t))}removeSchemaFromIndex(e){return this.fuseEngine.removeSchemaFromIndex(e),o.ResultAsync.fromSafePromise(Promise.resolve())}replaceNotesIndex(e){return o.ResultAsync.fromPromise(this.fuseEngine.replaceNotesIndex(e),e=>new s.DendronError({message:"issue replacing index",innerError:e}))}replaceSchemasIndex(e){return o.ResultAsync.fromPromise(this.fuseEngine.replaceSchemaIndex(e),e=>new s.DendronError({message:"issue replacing index",innerError:e}))}updateNotesIndex(e){return o.ResultAsync.fromPromise(this.fuseEngine.updateNotesIndex(e).then(()=>{}),e=>new s.DendronError({message:"issue updating index",innerError:e}))}updateSchemasIndex(){throw Error("Method not implemented.")}}t.FuseQueryStore=c},86272:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0})},55025:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0})},55622:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0})},64352:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0})},9289:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0})},74812:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0})},47478:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.NoteMetadataStore=void 0;let i=r(n(96486)),o=n(67949),a=n(8115),s=n(95120),u=n(85390),c=n(49500);class l{constructor(){this._noteMetadataById={},this._noteIdsByFname={}}dispose(){this._noteMetadataById={},this._noteIdsByFname={}}async get(e){let t=this._noteMetadataById[e];return t?{data:i.default.cloneDeep(t)}:{error:a.DendronError.createFromStatus({status:o.ERROR_STATUS.CONTENT_NOT_FOUND,message:`NoteProps metadata not found for key ${e}.`,severity:o.ERROR_SEVERITY.MINOR})}}async find(e){let{fname:t,vault:n,excludeStub:r}=e;if(!t&&!n&&i.default.isUndefined(r))return{data:[]};let o;if(t){let a=(0,u.cleanName)(t),s=this._noteIdsByFname[a];if(!s)return{data:[]};o=s.map(e=>this._noteMetadataById[e]).filter(u.isNotUndefined)}else o=i.default.values(this._noteMetadataById);return n&&(o=o.filter(e=>c.VaultUtils.isEqualV2(e.vault,n))),r&&(o=o.filter(e=>!0!==e.stub)),{data:i.default.cloneDeep(o)}}async write(e,t){let n=this._noteMetadataById[t.id];if(n){if((0,u.cleanName)(n.fname)===(0,u.cleanName)(t.fname))return this._noteMetadataById[t.id]=t,{data:e};s.NoteFnameDictUtils.delete(n,this._noteIdsByFname)}return this._noteMetadataById[t.id]=t,s.NoteFnameDictUtils.add(t,this._noteIdsByFname),{data:e}}async delete(e){let t=this._noteMetadataById[e];return t&&s.NoteFnameDictUtils.delete(t,this._noteIdsByFname),delete this._noteMetadataById[e],{data:e}}}t.NoteMetadataStore=l},87990:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.NoteStore=void 0;let i=r(n(96486)),o=n(17373),a=n(67949),s=n(13079),u=n(8115),c=n(85390),l=n(49500);class f{constructor(e,t,n){this._fileStore=e,this._metadataStore=t,this._wsRoot=n}dispose(){this._metadataStore.dispose()}async get(e){let t=await this.getMetadata(e);if(t.error)return{error:t.error};if(t.data.stub)return{data:{...t.data,body:""}};let n=o.Utils.joinPath(this._wsRoot,l.VaultUtils.getRelPath(t.data.vault),t.data.fname+".md"),r=await this._fileStore.read(n);if(r.error)return{error:r.error};let i=r.data.match(/^---[\s\S]+?---/);if(!i)return{error:u.DendronError.createFromStatus({status:a.ERROR_STATUS.BAD_PARSE_FOR_NOTE,message:`Frontmatter missing for file ${n.fsPath} associated with note ${e}.`,severity:a.ERROR_SEVERITY.MINOR})};{let s=i[0].length,c=r.data.slice(s+1),f={...t.data,body:c};return{data:f}}}async bulkGet(e){return Promise.all(e.map(e=>this.get(e)))}async getMetadata(e){return this._metadataStore.get(e)}async bulkGetMetadata(e){return Promise.all(e.map(e=>this.getMetadata(e)))}async find(e){let t=await this.findMetaData(e);if(t.error)return{error:t.error};let n=await Promise.all(t.data.map(e=>this.get(e.id)));return{data:n.map(e=>e.data).filter(c.isNotUndefined)}}async findMetaData(e){return this._metadataStore.find(e)}async write(e){let{key:t,note:n}=e,r=i.default.omit(n,["body"]),a=s.NoteUtils.serialize(n,{excludeStub:!0}),u={...r,contentHash:(0,c.genHash)(a)},f=await this.writeMetadata({key:t,noteMeta:u});if(f.error)return{error:f.error};if(!u.stub){let d=o.Utils.joinPath(this._wsRoot,l.VaultUtils.getRelPath(n.vault),n.fname+".md"),p=await this._fileStore.write(d,a);if(p.error)return{error:p.error}}return{data:t}}async writeMetadata(e){let{key:t,noteMeta:n}=e;return t!==n.id?{error:u.DendronError.createFromStatus({status:a.ERROR_STATUS.WRITE_FAILED,message:`Ids don't match between key ${t} and note meta ${n}.`,severity:a.ERROR_SEVERITY.MINOR})}:this._metadataStore.write(t,n)}async bulkWriteMetadata(e){return Promise.all(e.map(e=>this.writeMetadata(e)))}async delete(e){let t=await this.getMetadata(e);if(t.error)return{error:t.error};let n=await this.deleteMetadata(e);if(n.error)return{error:n.error};if(!t.data.stub){let r=o.Utils.joinPath(this._wsRoot,l.VaultUtils.getRelPath(t.data.vault),t.data.fname+".md"),i=await this._fileStore.delete(r);if(i.error)return{error:i.error}}return{data:e}}async deleteMetadata(e){let t=await this.getMetadata(e);return t.error?{error:t.error}:"root"===t.data.fname?{error:u.DendronError.createFromStatus({status:a.ERROR_STATUS.CANT_DELETE_ROOT,message:`Cannot delete ${e}. Root notes cannot be deleted.`,severity:a.ERROR_SEVERITY.MINOR})}:this._metadataStore.delete(e)}async rename(e,t){let n=e.fname+t.fname;return{data:n}}}t.NoteStore=f},18887:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.SchemaMetadataStore=void 0;let i=r(n(96486)),o=n(67949),a=n(8115);class s{constructor(){this._schemaMetadataById={}}dispose(){this._schemaMetadataById={}}async get(e){let t=this._schemaMetadataById[e];return t?{data:i.default.cloneDeep(t)}:{error:a.DendronError.createFromStatus({status:o.ERROR_STATUS.CONTENT_NOT_FOUND,message:`SchemaModuleProps not found for key ${e}.`,severity:o.ERROR_SEVERITY.MINOR})}}async find(e){throw Error("Method not implemented.")}async write(e,t){return this._schemaMetadataById[t.root.id]=t,{data:e}}async delete(e){return delete this._schemaMetadataById[e],{data:e}}}t.SchemaMetadataStore=s},88005:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.SchemaStore=void 0;let r=n(17373),i=n(67949),o=n(13079),a=n(8115),s=n(49500);class u{constructor(e,t,n){this._fileStore=e,this._metadataStore=t,this._wsRoot=n}dispose(){this._metadataStore.dispose()}async getMetadata(e){return this._metadataStore.get(e)}async bulkGetMetadata(e){return Promise.all(e.map(e=>this.getMetadata(e)))}async write(e){let{key:t,schema:n}=e,i=await this.writeMetadata({key:t,schema:n});if(i.error)return{error:i.error};let a=r.Utils.joinPath(this._wsRoot,s.VaultUtils.getRelPath(n.vault),n.fname+".schema.yml"),u=await this._fileStore.write(a,o.SchemaUtils.serializeModuleProps(n));return u.error?{error:u.error}:{data:t}}async writeMetadata(e){let{key:t,schema:n}=e;return t!==n.root.id?{error:a.DendronError.createFromStatus({status:i.ERROR_STATUS.WRITE_FAILED,message:`Ids don't match between key ${t} and schema ${n}.`,severity:i.ERROR_SEVERITY.MINOR})}:this._metadataStore.write(t,n)}async bulkWriteMetadata(e){return Promise.all(e.map(e=>this.writeMetadata(e)))}async delete(e){let t=await this.getMetadata(e);if(t.error)return{error:t.error};let n=await this.deleteMetadata(e);if(n.error)return{error:n.error};let i=r.Utils.joinPath(this._wsRoot,s.VaultUtils.getRelPath(t.data.vault),t.data.fname+".schema.yml"),o=await this._fileStore.delete(i);return o.error?{error:o.error}:{data:e}}async deleteMetadata(e){let t=await this.getMetadata(e);return t.error?{error:t.error}:"root"===t.data.fname?{error:a.DendronError.createFromStatus({status:i.ERROR_STATUS.CANT_DELETE_ROOT,message:`Cannot delete ${e}. Root schemas cannot be deleted.`,severity:i.ERROR_SEVERITY.MINOR})}:this._metadataStore.delete(e)}}t.SchemaStore=u},20937:function(e,t,n){"use strict";var r=this&&this.__createBinding||(Object.create?function(e,t,n,r){void 0===r&&(r=n);var i=Object.getOwnPropertyDescriptor(t,n);(!i||("get"in i?!t.__esModule:i.writable||i.configurable))&&(i={enumerable:!0,get:function(){return t[n]}}),Object.defineProperty(e,r,i)}:function(e,t,n,r){void 0===r&&(r=n),e[r]=t[n]}),i=this&&this.__exportStar||function(e,t){for(var n in e)"default"===n||Object.prototype.hasOwnProperty.call(t,n)||r(t,e,n)};Object.defineProperty(t,"__esModule",{value:!0}),i(n(55622),t),i(n(55025),t),i(n(9289),t),i(n(47478),t),i(n(87990),t),i(n(74812),t),i(n(18887),t),i(n(88005),t),i(n(3991),t),i(n(64352),t),i(n(86272),t)},29304:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.THEMES=void 0;let n={bodyBackground:"#ffffff"},r={bodyBackground:"#303030"};t.THEMES={DARK:r,LIGHT:n}},52973:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.Time=void 0;let r=n(99490);class i{static now(){return r.DateTime.local()}}t.Time=i,i.DateTime=r.DateTime},80251:function(e,t,n){"use strict";var r=n(83454);Object.defineProperty(t,"__esModule",{value:!0}),t.TimeUtils=t.milliseconds=t.nanosToMillis=t.nanos=void 0;let i=n(8115),o=1e9,a=1e6,s=()=>{let e=r.hrtime();return e[0]*o+e[1]};t.nanos=s;let u=e=>e/a;t.nanosToMillis=u;let c=()=>new Date().getTime();t.milliseconds=c;class l{static async sleep(e){return new Promise(t=>{setTimeout(()=>{t({sleep:e})},e)})}static async awaitWithLimit(e,t){let n=!1,r=await Promise.race([(async()=>{await l.sleep(e.limitMs),n=!0})(),t(),]);return n?{error:i.ErrorFactory.createInvalidStateError({message:"cb took too long"})}:{data:r}}}t.TimeUtils=l},60001:function(e,t){"use strict";var n,r,i,o;Object.defineProperty(t,"__esModule",{value:!0}),t.DVaultSync=t.DVaultVisibility=void 0,(i=n=t.DVaultVisibility||(t.DVaultVisibility={})).PRIVATE="private",(o=r=t.DVaultSync||(t.DVaultSync={})).SKIP="skip",o.NO_PUSH="noPush",o.NO_COMMIT="noCommit",o.SYNC="sync"},740:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0})},77650:function(e,t){"use strict";var n,r,i,o;Object.defineProperty(t,"__esModule",{value:!0}),t.InstallStatus=t.WorkspaceType=void 0,(i=n=t.WorkspaceType||(t.WorkspaceType={})).NATIVE="NATIVE",i.CODE="CODE",i.NONE="NONE",(o=r=t.InstallStatus||(t.InstallStatus={})).NO_CHANGE="NO_CHANGE",o.INITIAL_INSTALL="INITIAL_INSTALL",o.UPGRADED="UPGRADED"},57977:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0})},59767:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0})},78539:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0})},11519:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0})},21169:function(e,t){"use strict";var n,r;Object.defineProperty(t,"__esModule",{value:!0}),t.DiagnosticSeverity=t.isDisposable=void 0;let i=e=>void 0!==e.dispose;t.isDisposable=i,(r=n=t.DiagnosticSeverity||(t.DiagnosticSeverity={}))[r.Error=0]="Error",r[r.Warning=1]="Warning",r[r.Information=2]="Information",r[r.Hint=3]="Hint"},65047:function(e,t){"use strict";var n,r;Object.defineProperty(t,"__esModule",{value:!0}),t.VaultSyncModeEnum=void 0,(r=n=t.VaultSyncModeEnum||(t.VaultSyncModeEnum={})).skip="skip",r.noPush="noPush",r.noCommit="noCommit",r.sync="sync"},4832:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.genDefaultCommandConfig=void 0;let r=n(61697),i=n(84224),o=n(9504),a=n(19827),s=n(37386);function u(){return{lookup:(0,a.genDefaultLookupConfig)(),randomNote:(0,s.genDefaultRandomNoteConfig)(),insertNoteLink:(0,o.genDefaultInsertNoteLinkConfig)(),insertNoteIndex:(0,i.genDefaultInsertNoteIndexConfig)(),copyNoteLink:(0,r.genDefaultCopyNoteLinkConfig)(),templateHierarchy:"template"}}t.genDefaultCommandConfig=u},87704:function(e,t){"use strict";function n(){return{aliasMode:"title"}}Object.defineProperty(t,"__esModule",{value:!0}),t.genDefaultCopyNoteLinkConfig=void 0,t.genDefaultCopyNoteLinkConfig=n},61697:function(e,t,n){"use strict";var r=this&&this.__createBinding||(Object.create?function(e,t,n,r){void 0===r&&(r=n);var i=Object.getOwnPropertyDescriptor(t,n);(!i||("get"in i?!t.__esModule:i.writable||i.configurable))&&(i={enumerable:!0,get:function(){return t[n]}}),Object.defineProperty(e,r,i)}:function(e,t,n,r){void 0===r&&(r=n),e[r]=t[n]}),i=this&&this.__exportStar||function(e,t){for(var n in e)"default"===n||Object.prototype.hasOwnProperty.call(t,n)||r(t,e,n)};Object.defineProperty(t,"__esModule",{value:!0}),i(n(4832),t),i(n(84224),t),i(n(9504),t),i(n(19827),t),i(n(37386),t),i(n(87704),t)},84224:function(e,t){"use strict";function n(){return{enableMarker:!1}}Object.defineProperty(t,"__esModule",{value:!0}),t.genDefaultInsertNoteIndexConfig=void 0,t.genDefaultInsertNoteIndexConfig=n},9504:function(e,t){"use strict";var n,r;function i(){return{aliasMode:n.none,enableMultiSelect:!1}}Object.defineProperty(t,"__esModule",{value:!0}),t.genDefaultInsertNoteLinkConfig=t.InsertNoteLinkAliasModeEnum=void 0,(r=n=t.InsertNoteLinkAliasModeEnum||(t.InsertNoteLinkAliasModeEnum={})).snippet="snippet",r.selection="selection",r.title="title",r.prompt="prompt",r.none="none",t.genDefaultInsertNoteLinkConfig=i},19827:function(e,t){"use strict";var n,r,i,o;function a(){return{note:{selectionMode:n.extract,confirmVaultOnCreate:!0,vaultSelectionModeOnCreate:r.smart,leaveTrace:!1,bubbleUpCreateNew:!0,fuzzThreshold:.2}}}Object.defineProperty(t,"__esModule",{value:!0}),t.genDefaultLookupConfig=t.LookupSelectVaultModeOnCreateEnum=t.LookupSelectionModeEnum=void 0,(i=n=t.LookupSelectionModeEnum||(t.LookupSelectionModeEnum={})).extract="extract",i.link="link",i.none="none",(o=r=t.LookupSelectVaultModeOnCreateEnum||(t.LookupSelectVaultModeOnCreateEnum={})).smart="smart",o.alwaysPrompt="alwaysPrompt",t.genDefaultLookupConfig=a},37386:function(e,t){"use strict";function n(){return{}}Object.defineProperty(t,"__esModule",{value:!0}),t.genDefaultRandomNoteConfig=void 0,t.genDefaultRandomNoteConfig=n},47239:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.genDefaultDendronConfig=void 0;let r=n(4832),i=n(71450),o=n(84657),a=n(86671),s=n(9356);function u(){return{version:5,commands:(0,r.genDefaultCommandConfig)(),workspace:(0,i.genDefaultWorkspaceConfig)(),preview:(0,o.genDefaultPreviewConfig)(),publishing:(0,a.genDefaultPublishingConfig)(),dev:(0,s.genDefaultDevConfig)()}}t.genDefaultDendronConfig=u},9356:function(e,t){"use strict";function n(){}Object.defineProperty(t,"__esModule",{value:!0}),t.genDefaultDevConfig=void 0,t.genDefaultDevConfig=n},91045:function(e,t){"use strict";function n(){return{enableFMTitle:!0,enableNoteTitleForLink:!0,enableKatex:!0,enablePrettyRefs:!0,enableChildLinks:!0,enableBackLinks:!0}}Object.defineProperty(t,"__esModule",{value:!0}),t.genDefaultGlobalConfig=void 0,t.genDefaultGlobalConfig=n},48235:function(e,t,n){"use strict";var r=this&&this.__createBinding||(Object.create?function(e,t,n,r){void 0===r&&(r=n);var i=Object.getOwnPropertyDescriptor(t,n);(!i||("get"in i?!t.__esModule:i.writable||i.configurable))&&(i={enumerable:!0,get:function(){return t[n]}}),Object.defineProperty(e,r,i)}:function(e,t,n,r){void 0===r&&(r=n),e[r]=t[n]}),i=this&&this.__exportStar||function(e,t){for(var n in e)"default"===n||Object.prototype.hasOwnProperty.call(t,n)||r(t,e,n)};Object.defineProperty(t,"__esModule",{value:!0}),i(n(61697),t),i(n(83321),t),i(n(92322),t),i(n(91045),t),i(n(6444),t),i(n(9356),t),i(n(47239),t)},92322:function(e,t,n){"use strict";var r=this&&this.__createBinding||(Object.create?function(e,t,n,r){void 0===r&&(r=n);var i=Object.getOwnPropertyDescriptor(t,n);(!i||("get"in i?!t.__esModule:i.writable||i.configurable))&&(i={enumerable:!0,get:function(){return t[n]}}),Object.defineProperty(e,r,i)}:function(e,t,n,r){void 0===r&&(r=n),e[r]=t[n]}),i=this&&this.__exportStar||function(e,t){for(var n in e)"default"===n||Object.prototype.hasOwnProperty.call(t,n)||r(t,e,n)};Object.defineProperty(t,"__esModule",{value:!0}),i(n(84657),t)},84657:function(e,t){"use strict";function n(){return{enableFMTitle:!0,enableNoteTitleForLink:!0,enableFrontmatterTags:!0,enableHashesForFMTags:!1,enablePrettyRefs:!0,enableKatex:!0,automaticallyShowPreview:!1}}Object.defineProperty(t,"__esModule",{value:!0}),t.genDefaultPreviewConfig=void 0,t.genDefaultPreviewConfig=n},64548:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0})},32016:function(e,t,n){"use strict";var r,i;Object.defineProperty(t,"__esModule",{value:!0}),t.githubSchema=t.genDefaultGithubConfig=t.GithubEditViewModeEnum=void 0;let o=n(57761);function a(){return{enableEditLink:!0,editLinkText:"Edit this page on GitHub",editBranch:"main",editViewMode:r.tree}}(i=r=t.GithubEditViewModeEnum||(t.GithubEditViewModeEnum={})).tree="tree",i.edit="edit",t.genDefaultGithubConfig=a;let s=(0,o.schemaForType)()(o.z.union([o.z.literal(r.tree),o.z.literal(r.edit),]));t.githubSchema=(0,o.schemaForType)()(o.z.object({cname:o.z.string().optional(),enableEditLink:o.z.boolean().default(!0),editLinkText:o.z.string().optional().default("Edit this page on GitHub"),editBranch:o.z.string().optional().default("main"),editViewMode:s.optional().default(r.tree),editRepository:o.z.string().optional()}))},6444:function(e,t,n){"use strict";var r=this&&this.__createBinding||(Object.create?function(e,t,n,r){void 0===r&&(r=n);var i=Object.getOwnPropertyDescriptor(t,n);(!i||("get"in i?!t.__esModule:i.writable||i.configurable))&&(i={enumerable:!0,get:function(){return t[n]}}),Object.defineProperty(e,r,i)}:function(e,t,n,r){void 0===r&&(r=n),e[r]=t[n]}),i=this&&this.__exportStar||function(e,t){for(var n in e)"default"===n||Object.prototype.hasOwnProperty.call(t,n)||r(t,e,n)};Object.defineProperty(t,"__esModule",{value:!0}),i(n(32016),t),i(n(86671),t),i(n(14260),t),i(n(64548),t)},86671:function(e,t,n){"use strict";var r,i,o,a;Object.defineProperty(t,"__esModule",{value:!0}),t.genDefaultPublishingConfig=t.publishingSchema=t.SearchMode=t.Theme=void 0;let s=n(32016),u=n(14260),c=n(57761);(o=r=t.Theme||(t.Theme={})).DARK="dark",o.LIGHT="light",o.CUSTOM="custom",(a=i=t.SearchMode||(t.SearchMode={})).SEARCH="search",a.LOOKUP="lookup";let l=c.z.enum([i.SEARCH,i.LOOKUP]);function f(){return{enableFMTitle:!0,enableNoteTitleForLink:!0,enablePrettyRefs:!0,enableKatex:!0,copyAssets:!0,siteHierarchies:["root"],writeStubs:!1,siteRootDir:"docs",seo:(0,u.genDefaultSEOConfig)(),github:(0,s.genDefaultGithubConfig)(),enableSiteLastModified:!0,enableFrontmatterTags:!0,enableHashesForFMTags:!1,enableRandomlyColoredTags:!0,enableTaskNotes:!0,enablePrettyLinks:!0,searchMode:i.LOOKUP}}t.publishingSchema=(0,c.schemaForType)()(c.z.object({enableFMTitle:c.z.boolean().optional().default(!0),enableNoteTitleForLink:c.z.boolean().optional().default(!0),enablePrettyRefs:c.z.boolean().optional().default(!0),enableKatex:c.z.boolean().optional().default(!0),copyAssets:c.z.boolean().default(!0),siteHierarchies:c.z.array(c.z.string()).default(["root"]),writeStubs:c.z.boolean().default(!1),siteRootDir:c.z.string().default("docs"),seo:u.seoSchema,github:s.githubSchema.optional(),enableSiteLastModified:c.z.boolean().default(!0),enableFrontmatterTags:c.z.boolean().default(!0),enableHashesForFMTags:c.z.boolean().default(!1),enableRandomlyColoredTags:c.z.boolean().optional().default(!0),enableTaskNotes:c.z.boolean().optional().default(!0),enablePrettyLinks:c.z.boolean().default(!0),searchMode:l.optional().default(i.LOOKUP)}).passthrough()),t.genDefaultPublishingConfig=f},14260:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.seoSchema=t.genDefaultSEOConfig=void 0;let r=n(57761);function i(){return{title:"Dendron",description:"Personal Knowledge Space"}}t.genDefaultSEOConfig=i,t.seoSchema=(0,r.schemaForType)()(r.z.object({title:r.z.string().optional().default("Dendron"),description:r.z.string().optional().default("Personal Knowledge Space"),author:r.z.string().optional(),twitter:r.z.string().optional(),image:r.z.object({url:r.z.string(),alt:r.z.string()}).optional()}))},71450:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.genDefaultWorkspaceConfig=void 0;let r=n(18255),i=n(42653),o=n(96728),a=n(65047),s=n(62485);function u(){return{vaults:[],journal:(0,r.genDefaultJournalConfig)(),scratch:(0,i.genDefaultScratchConfig)(),task:(0,s.genDefaultTaskConfig)(),graph:(0,o.genDefaultGraphConfig)(),enableAutoCreateOnDefinition:!1,enableXVaultWikiLink:!1,enableRemoteVaultInit:!0,enableUserTags:!0,enableHashTags:!0,workspaceVaultSyncMode:a.VaultSyncModeEnum.noCommit,enableAutoFoldFrontmatter:!1,enableEditorDecorations:!0,maxPreviewsCached:10,maxNoteLength:204800,enableFullHierarchyNoteTitle:!1}}t.genDefaultWorkspaceConfig=u},96728:function(e,t){"use strict";function n(){return{zoomSpeed:1,createStub:!1}}Object.defineProperty(t,"__esModule",{value:!0}),t.genDefaultGraphConfig=void 0,t.genDefaultGraphConfig=n},83321:function(e,t,n){"use strict";var r=this&&this.__createBinding||(Object.create?function(e,t,n,r){void 0===r&&(r=n);var i=Object.getOwnPropertyDescriptor(t,n);(!i||("get"in i?!t.__esModule:i.writable||i.configurable))&&(i={enumerable:!0,get:function(){return t[n]}}),Object.defineProperty(e,r,i)}:function(e,t,n,r){void 0===r&&(r=n),e[r]=t[n]}),i=this&&this.__exportStar||function(e,t){for(var n in e)"default"===n||Object.prototype.hasOwnProperty.call(t,n)||r(t,e,n)};Object.defineProperty(t,"__esModule",{value:!0}),i(n(96728),t),i(n(18255),t),i(n(42653),t),i(n(60330),t),i(n(71450),t),i(n(62485),t)},18255:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.genDefaultJournalConfig=void 0;let r=n(60330);function i(){return{dailyDomain:"daily",name:"journal",dateFormat:"y.MM.dd",addBehavior:r.NoteAddBehaviorEnum.childOfDomain}}t.genDefaultJournalConfig=i},42653:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.genDefaultScratchConfig=void 0;let r=n(60330);function i(){return{name:"scratch",dateFormat:"y.MM.dd.HHmmss",addBehavior:r.NoteAddBehaviorEnum.asOwnDomain}}t.genDefaultScratchConfig=i},62485:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.TaskNoteUtils=t.genDefaultTaskConfig=void 0;let r=n(1419),i=n(60330);function o(){return{name:"task",dateFormat:"y.MM.dd",addBehavior:i.NoteAddBehaviorEnum.asOwnDomain,statusSymbols:{"":" ",wip:"w",done:"x",assigned:"a",moved:"m",blocked:"b",delegated:"l",dropped:"d",pending:"y"},taskCompleteStatus:["done","x"],prioritySymbols:{H:"high",M:"medium",L:"low"},todoIntegration:!1,createTaskSelectionType:r.LookupSelectionTypeEnum.selection2link}}t.genDefaultTaskConfig=o;let a=["status","due","owner","priority"];class s{static isTaskNote(e){for(let t of a)if(void 0!==e.custom&&void 0!==e.custom[t])return!0;return!1}static genDefaultTaskNoteProps(e,t){let n={custom:{status:"",due:"",priority:"",owner:""}};return t.todoIntegration&&(n.custom.TODO=e.title),n}static getStatusSymbolRaw({note:e,taskConfig:t}){let{status:n}=e.custom;if(void 0===n)return;if(!t.statusSymbols)return`${n}`;let r=t.statusSymbols[n];return void 0===r?`${n}`:`${r}`}static getStatusSymbol(e){let t=this.getStatusSymbolRaw(e);if(void 0!==t)return`[${this.getStatusSymbolRaw(e)}]`}static isTaskComplete({note:e,taskConfig:t}){var n;let{status:r}=e.custom;return r&&(null===(n=t.taskCompleteStatus)||void 0===n?void 0:n.includes(r))}static getPrioritySymbol({note:e,taskConfig:t}){let{priority:n}=e.custom;if(void 0===n)return;if(!t.prioritySymbols)return n;let r=t.prioritySymbols[n];return void 0===r?n:r}}t.TaskNoteUtils=s},60330:function(e,t){"use strict";var n,r;Object.defineProperty(t,"__esModule",{value:!0}),t.NoteAddBehaviorEnum=void 0,(r=n=t.NoteAddBehaviorEnum||(t.NoteAddBehaviorEnum={})).childOfDomain="childOfDomain",r.childOfDomainNamespace="childOfDomainNamespace",r.childOfCurrent="childOfCurrent",r.asOwnDomain="asOwnDomain"},98223:function(e,t){"use strict";var n,r;Object.defineProperty(t,"__esModule",{value:!0}),t.DECORATION_TYPES=void 0,(r=n=t.DECORATION_TYPES||(t.DECORATION_TYPES={})).timestamp="timestamp",r.blockAnchor="blockAnchor",r.wikiLink="wikiLink",r.brokenWikilink="brokenWikilink",r.noteRef="noteRef",r.brokenNoteRef="brokenNoteRef",r.alias="alias",r.taskNote="taskNote"},43711:function(e,t,n){"use strict";var r,i;Object.defineProperty(t,"__esModule",{value:!0}),t.DuplicateNoteError=t.EngineInitErrorType=void 0;let o=n(67949),a=n(8115),s=n(49500);(i=r=t.EngineInitErrorType||(t.EngineInitErrorType={})).DUPLICATE_NOTE_ID="duplicate note id";class u extends a.DendronError{constructor(e){super({...e,severity:o.ERROR_SEVERITY.MINOR,message:`Notes ${e.noteA.fname} in ${s.VaultUtils.getName(e.noteA.vault)} and ${e.noteB.fname} in ${s.VaultUtils.getName(e.noteB.vault)} have duplicate IDs.`,code:r.DUPLICATE_NOTE_ID}),this.noteA={fname:e.noteA.fname,vault:e.noteA.vault},this.noteB={fname:e.noteB.fname,vault:e.noteB.vault}}static isDuplicateNoteError(e){return e.code===r.DUPLICATE_NOTE_ID}}t.DuplicateNoteError=u},81983:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.EventEmitter=void 0;let r=n(25293);class i{constructor(){this._emitter=new r.EventEmitter,this._EVENT_CHANNEL="default",this.event=(e,t)=>{let n=e;t&&(n=n.bind(t)),this._emitter.on(this._EVENT_CHANNEL,n);let r={dispose:()=>{this._emitter.removeListener(this._EVENT_CHANNEL,n)}};return r}}fire(e){this._emitter.emit(this._EVENT_CHANNEL,e)}dispose(){this._emitter.removeAllListeners(this._EVENT_CHANNEL)}}t.EventEmitter=i},80276:function(e,t){"use strict";var n,r,i,o;Object.defineProperty(t,"__esModule",{value:!0}),t.DNodeImplicitPropsEnum=t.DNodeExplicitPropsEnum=void 0,(i=n=t.DNodeExplicitPropsEnum||(t.DNodeExplicitPropsEnum={})).id="id",i.title="title",i.desc="desc",i.updated="updated",i.created="created",i.config="config",i.color="color",i.tags="tags",i.traitIds="traitIds",i.image="image",(o=r=t.DNodeImplicitPropsEnum||(t.DNodeImplicitPropsEnum={})).fname="fname",o.parent="parent",o.children="children",o.body="body",o.data="data",o.schemaStub="schemaStub",o.type="type",o.custom="custom",o.links="links"},86194:function(e,t){"use strict";var n,r;Object.defineProperty(t,"__esModule",{value:!0}),t.DHookType=void 0,(r=n=t.DHookType||(t.DHookType={})).onCreate="onCreate"},60494:function(e,t,n){"use strict";var r,i,o=this&&this.__createBinding||(Object.create?function(e,t,n,r){void 0===r&&(r=n);var i=Object.getOwnPropertyDescriptor(t,n);(!i||("get"in i?!t.__esModule:i.writable||i.configurable))&&(i={enumerable:!0,get:function(){return t[n]}}),Object.defineProperty(e,r,i)}:function(e,t,n,r){void 0===r&&(r=n),e[r]=t[n]}),a=this&&this.__exportStar||function(e,t){for(var n in e)"default"===n||Object.prototype.hasOwnProperty.call(t,n)||o(t,e,n)};Object.defineProperty(t,"__esModule",{value:!0}),t.DendronUserSpecial=void 0,a(n(21169),t),a(n(80276),t),a(n(86194),t),a(n(94236),t),a(n(54129),t),a(n(30734),t),a(n(77650),t),a(n(54129),t),a(n(21169),t),a(n(98223),t),a(n(1419),t),a(n(44990),t),a(n(81983),t),a(n(11519),t),a(n(43711),t),a(n(77422),t),a(n(59767),t),a(n(60001),t),a(n(740),t),a(n(57977),t),a(n(78539),t),a(n(48235),t),(i=r=t.DendronUserSpecial||(t.DendronUserSpecial={})).everyone="everyone",i.anonymous="anonymous"},1419:function(e,t){"use strict";var n,r,i,o,a,s,u,c,l,f;Object.defineProperty(t,"__esModule",{value:!0}),t.LookupFilterTypeEnum=t.LookupSplitTypeEnum=t.LookupEffectTypeEnum=t.LookupNoteTypeEnum=t.LookupSelectionTypeEnum=void 0,(s=n=t.LookupSelectionTypeEnum||(t.LookupSelectionTypeEnum={})).selection2link="selection2link",s.selectionExtract="selectionExtract",s.selection2Items="selection2Items",s.none="none",(u=r=t.LookupNoteTypeEnum||(t.LookupNoteTypeEnum={})).journal="journal",u.scratch="scratch",u.task="task",u.none="none",(c=i=t.LookupEffectTypeEnum||(t.LookupEffectTypeEnum={})).copyNoteLink="copyNoteLink",c.multiSelect="multiSelect",(l=o=t.LookupSplitTypeEnum||(t.LookupSplitTypeEnum={})).horizontal="horizontal",(f=a=t.LookupFilterTypeEnum||(t.LookupFilterTypeEnum={})).directChildOnly="directChildOnly"},94236:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0})},54129:function(e,t){"use strict";var n,r;Object.defineProperty(t,"__esModule",{value:!0}),t.SEED_REGISTRY=t.SeedCommands=void 0,(r=n=t.SeedCommands||(t.SeedCommands={})).ADD="add",r.INIT="init",r.INFO="info",r.REMOVE="remove",t.SEED_REGISTRY={"dendron.dendron-site":{id:"dendron.dendron-site",name:"dendron-site",publisher:"dendron",description:"The Dendron Wiki. This contains the Dendron user guide, from getting started to advanced features. This also has information for Dendron developers.",license:"Creative Commons Attribution 4.0 International",root:"vault",repository:{type:"git",url:"https://github.com/dendronhq/dendron-site.git"},site:{url:"https://wiki.dendron.so",index:"dendron"},assets:{publisherLogo:"https://org-dendron-public-assets.s3.amazonaws.com/images/tutorial-logo_small.png"}},"dendron.handbook":{id:"dendron.handbook",name:"handbook",publisher:"dendron",description:"The Dendron Company Handbook. Outlines Company Values and Principles.",license:"Creative Commons Attribution 4.0 International",root:"handbook",repository:{type:"git",url:"https://github.com/dendronhq/handbook.git"},site:{url:"https://handbook.dendron.so",index:"handbook"},assets:{publisherLogo:"https://org-dendron-public-assets.s3.amazonaws.com/images/tutorial-logo_small.png"}},"dendron.templates":{id:"dendron.templates",name:"templates",publisher:"dendron",description:"Templates that can be applied to your new Dendron notes.",license:"Creative Commons Attribution 4.0 International",root:"templates",repository:{type:"git",url:"https://github.com/dendronhq/templates.git"},assets:{publisherLogo:"https://org-dendron-public-assets.s3.amazonaws.com/images/tutorial-logo_small.png"}},"dendron.tldr":{id:"dendron.tldr",name:"tldr",publisher:"dendron",description:"Documentation for the most popular CLI tools.",license:"Creative Commons Attribution 4.0 International",root:"vault",repository:{type:"git",url:"https://github.com/kevinslin/seed-tldr.git"},site:{url:"https://tldr.dendron.so",index:"cli"},assets:{publisherLogo:"https://org-dendron-public-assets.s3.amazonaws.com/images/tutorial-logo_small.png"}},"dendron.xkcd":{id:"dendron.xkcd",name:"xkcd",publisher:"dendron",description:"A complete collection of xkcd comics by Randall Monroe",license:"Creative Commons Attribution-NonCommercial 2.5 License",root:"vault",repository:{type:"git",url:"https://github.com/kevinslin/seed-xkcd.git"},site:{url:"https://xkcd.dendron.so"},assets:{publisherLogo:"https://org-dendron-public-assets.s3.amazonaws.com/images/tutorial-logo_small.png"}},"dendron.aws":{id:"dendron.aws",name:"aws",publisher:"dendron",description:"Documentation on all things related to AWS.",license:"Multiple",root:"vault",repository:{type:"git",url:"https://github.com/dendronhq/dendron-aws-vault.git"},site:{url:"https://aws.dendron.so"},assets:{publisherLogo:"https://org-dendron-public-assets.s3.amazonaws.com/images/tutorial-logo_small.png"}}}},77422:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0})},30734:function(e,t){"use strict";var n,r,i,o,a,s,u,c,l,f,d,p,h,m,v,g,y,b,E,w,x,_,S,C;Object.defineProperty(t,"__esModule",{value:!0}),t.GraphTypeEnum=t.GraphThemeEnum=t.ConfigureUIMessageEnum=t.SeedBrowserMessageType=t.ThemeMessageType=t.LookupViewMessageEnum=t.NoteViewMessageEnum=t.CalendarViewMessageType=t.GraphViewMessageEnum=t.DMessageEnum=t.DMessageSource=t.MergeConflictOptions=void 0,(h=n=t.MergeConflictOptions||(t.MergeConflictOptions={})).OVERWRITE_LOCAL="Overwrite local value with remote value",h.OVERWRITE_REMOTE="Overwrite remote value with local value",h.SKIP="Skip this conflict(We will not merge, you'll resolve this manually)",h.SKIP_ALL="Skip All (you'll resolve all next conflicted entries manually) ",(m=r=t.DMessageSource||(t.DMessageSource={})).vscode="vscode",m.webClient="webClient",(v=i=t.DMessageEnum||(t.DMessageEnum={})).INIT="init",v.ON_DID_CHANGE_ACTIVE_TEXT_EDITOR="onDidChangeActiveTextEditor",v.ON_UPDATE_PREVIEW_HTML="onUpdatePreviewHTML",v.MESSAGE_DISPATCHER_READY="messageDispatcherReady",(g=o=t.GraphViewMessageEnum||(t.GraphViewMessageEnum={})).onSelect="onSelect",g.onGetActiveEditor="onGetActiveEditor",g.onReady="onReady",g.onRequestGraphOpts="onRequestGraphOpts",g.onGraphLoad="onGraphLoad",g.onGraphThemeChange="onGraphThemeChange",g.configureCustomStyling="configureCustomStyling",g.toggleGraphView="toggleGraphView",g.onGraphDepthChange="onGraphDepthChange",g.toggleGraphEdges="toggleGraphEdges",(y=a=t.CalendarViewMessageType||(t.CalendarViewMessageType={})).onSelect="onSelect",y.onGetActiveEditor="onGetActiveEditor",y.messageDispatcherReady="messageDispatcherReady",(b=s=t.NoteViewMessageEnum||(t.NoteViewMessageEnum={})).onClick="onClick",b.onGetActiveEditor="onGetActiveEditor",b.onLock="onLock",b.onUnlock="onUnlock",(E=u=t.LookupViewMessageEnum||(t.LookupViewMessageEnum={})).onUpdate="onUpdate",E.onValuesChange="onValuesChange",E.onRequestControllerState="onRequestControllerState",(w=c=t.ThemeMessageType||(t.ThemeMessageType={})).onThemeChange="onThemeChange",w.getTheme="getTheme",(x=l=t.SeedBrowserMessageType||(t.SeedBrowserMessageType={})).onSeedAdd="onSeedAdd",x.onOpenUrl="onOpenUrl",x.onSeedStateChange="onSeedStateChange",(_=f=t.ConfigureUIMessageEnum||(t.ConfigureUIMessageEnum={})).onUpdateConfig="onUpdateConfig",_.openDendronConfigYaml="openDendronConfigYaml",(S=d=t.GraphThemeEnum||(t.GraphThemeEnum={})).Block="Block",S.Classic="Classic",S.Monokai="Monokai",S.Custom="Custom",(C=p=t.GraphTypeEnum||(t.GraphTypeEnum={})).fullGraph="fullGraph",C.localGraph="localGraph"},44990:function(e,t){"use strict";var n,r,i,o;Object.defineProperty(t,"__esModule",{value:!0}),t.ProcFlavor=t.DendronASTDest=void 0,(i=n=t.DendronASTDest||(t.DendronASTDest={})).MD_ENHANCED_PREVIEW="MD_ENHANCED_PREVIEW",i.MD_REGULAR="MD_REGULAR",i.MD_DENDRON="MD_DENDRON",i.HTML="HTML",(o=r=t.ProcFlavor||(t.ProcFlavor={})).REGULAR="REGULAR",o.PUBLISHING="PUBLISHING",o.PREVIEW="PREVIEW",o.HOVER_PREVIEW="HOVER_PREVIEW",o.BACKLINKS_PANEL_HOVER="BACKLINK_HOVER"},61835:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.DUser=void 0;let r=n(60494);class i{constructor(e){this.username=e}static createAnonymous(){return new i(r.DendronUserSpecial.anonymous)}canPushVault(e){return!e.noAutoPush&&!!(!e.userPermission||e.userPermission.write[0]===r.DendronUserSpecial.everyone||e.userPermission.write.includes(this.username))}}t.DUser=i},97231:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.NullCache=void 0;class n{get(e){}set(e,t){}drop(e){}}t.NullCache=n},92162:function(e,t,n){"use strict";var r=this&&this.__createBinding||(Object.create?function(e,t,n,r){void 0===r&&(r=n);var i=Object.getOwnPropertyDescriptor(t,n);(!i||("get"in i?!t.__esModule:i.writable||i.configurable))&&(i={enumerable:!0,get:function(){return t[n]}}),Object.defineProperty(e,r,i)}:function(e,t,n,r){void 0===r&&(r=n),e[r]=t[n]}),i=this&&this.__exportStar||function(e,t){for(var n in e)"default"===n||Object.prototype.hasOwnProperty.call(t,n)||r(t,e,n)};Object.defineProperty(t,"__esModule",{value:!0}),i(n(97231),t),i(n(89463),t)},89463:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.LruCache=void 0;let i=r(n(39593)),o=n(8115);class a{constructor(e){if(e.maxItems<=0)throw new o.DendronError({message:"Max items cannot be less than or equal to 0"});this.cache=new i.default({max:e.maxItems})}get(e){return this.cache.get(e)}set(e,t){this.cache.set(e,t)}drop(e){this.cache.del(e)}}t.LruCache=a},29729:function(e,t){"use strict";function n(e,t){return{line:e.line-1+((null==t?void 0:t.line)||0),character:e.column-1+((null==t?void 0:t.column)||0)}}function r(e,t){return{start:n(e.start,t),end:n(e.end,t)}}function i(e,t){let{start:n,end:r}=t,i=e.split("\n").splice(n.line,r.line-n.line+1);return 0===i.length?"":(i[i.length-1]=i[i.length-1].substring(0,r.character),i[0]=i[0].substring(n.character),i.join("\n"))}function o(e,t,n,r){return{start:{line:e,character:t},end:{line:n,character:r}}}function a(e,t){let{line:n,column:r}={line:0,column:0,...t};return o(e.start.line+n,e.start.character+r,e.end.line+n,e.end.character+r)}Object.defineProperty(t,"__esModule",{value:!0}),t.offsetRange=t.newRange=t.getTextRange=t.position2VSCodeRange=t.point2VSCodePosition=void 0,t.point2VSCodePosition=n,t.position2VSCodeRange=r,t.getTextRange=i,t.newRange=o,t.offsetRange=a},78125:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.DateFormatUtil=void 0;class n{static formatDate(e){let t=new Date(e);return t.toLocaleDateString("en-US",{year:"numeric",month:"short",day:"numeric"})}}t.DateFormatUtil=n},75058:function(e,t,n){"use strict";var r=this&&this.__createBinding||(Object.create?function(e,t,n,r){void 0===r&&(r=n);var i=Object.getOwnPropertyDescriptor(t,n);(!i||("get"in i?!t.__esModule:i.writable||i.configurable))&&(i={enumerable:!0,get:function(){return t[n]}}),Object.defineProperty(e,r,i)}:function(e,t,n,r){void 0===r&&(r=n),e[r]=t[n]}),i=this&&this.__exportStar||function(e,t){for(var n in e)"default"===n||Object.prototype.hasOwnProperty.call(t,n)||r(t,e,n)};Object.defineProperty(t,"__esModule",{value:!0}),t.DefaultMap=t.URI=void 0;var o=n(17373);Object.defineProperty(t,"URI",{enumerable:!0,get:function(){return o.URI}}),i(n(92162),t),i(n(29729),t),i(n(78125),t),i(n(33848),t),i(n(11367),t),i(n(21912),t),i(n(91444),t),i(n(25459),t);class a extends Map{constructor(e){super(),this.defaultMethod=e}get(e){return this.has(e)||this.set(e,this.defaultMethod()),super.get(e)}}t.DefaultMap=a},33848:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.OrderedMatcher=void 0;class n{constructor(e){this.regexPattern=e.join(".*").toLowerCase()}isMatch(e){let t=e.toLowerCase().match(this.regexPattern);return t}}t.OrderedMatcher=n},11367:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.isVSCodeCommandUri=t.isWebUri=t.containsNonDendronUri=t.uriRegex=void 0;let i=r(n(96486));t.uriRegex=/^(?[\w+.-]+):(\/\/)?\S+/;let o=e=>{var n;let r=null===(n=t.uriRegex.exec(e))||void 0===n?void 0:n.groups;if(!(i.default.isUndefined(r)||i.default.isUndefined(r.scheme)))return"dendron"!==r.scheme};function a(e){var n,r;let i=null===(r=null===(n=e.match(t.uriRegex))||void 0===n?void 0:n.groups)||void 0===r?void 0:r.scheme;return"http"===i||"https"===i}function s(e){var n,r;let i=null===(r=null===(n=e.match(t.uriRegex))||void 0===n?void 0:n.groups)||void 0===r?void 0:r.scheme;return"command"===i}t.containsNonDendronUri=o,t.isWebUri=a,t.isVSCodeCommandUri=s},21912:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.ResponseUtil=void 0;let i=r(n(96486));class o{static hasError(e){return!i.default.isNull(e.error)}static createHappyResponse(e){return{error:null,data:e.data}}static createUnhappyResponse(e){return{error:e.error,data:void 0}}}t.ResponseUtil=o},91444:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.parseDendronURI=t.levenshteinDistance=void 0;let i=r(n(95493)),o=n(67949);function a(e,t){return i.default.get(e,t)}function s(e){if(e.startsWith(o.CONSTANTS.DENDRON_DELIMETER)){let[t,n]=e.split(o.CONSTANTS.DENDRON_DELIMETER)[1].split("/");return{vaultName:t,link:n}}return{link:e}}t.levenshteinDistance=a,t.parseDendronURI=s},25459:function(e,t,n){"use strict";var r,i,o=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.TreeUtils=t.TreeViewItemLabelTypeEnum=t.treeMenuSchema=void 0;let a=o(n(96486)),s=n(57761),u=n(25903),c=n(67949),l=n(49500),f=n(8115),d=s.z.lazy(()=>s.z.object({key:s.z.string(),title:s.z.string(),icon:s.z.union([s.z.literal("numberOutlined"),s.z.literal("plusOutlined")]).nullable(),hasTitleNumberOutlined:s.z.boolean(),vaultName:s.z.string(),children:s.z.array(d),contextValue:s.z.string().optional()}));t.treeMenuSchema=s.z.object({roots:s.z.array(d),child2parent:s.z.record(s.z.string().nullable()),notesLabelById:s.z.record(s.z.string()).optional()}),(r=i=t.TreeViewItemLabelTypeEnum||(t.TreeViewItemLabelTypeEnum={})).title="title",r.filename="filename";class p{static generateTreeData(e,t){function n(e){var t;let{type:n}=e;switch(n){case"category":return null===(t=e.link)||void 0===t?void 0:t.id;case"note":return e.id;default:(0,f.assertUnreachable)(n)}}function r(t,i){var o;let{child2parent:s,parent:u,notesLabelById:f}=i,d=n(t),p=e[d];if(a.default.isUndefined(p))return;let h=null;p.fname.toLowerCase()===c.TAGS_HIERARCHY_BASE?h="numberOutlined":p.stub&&(h="plusOutlined");let m=null!==(o=t.label)&&void 0!==o?o:p.title;f[p.id]=m;let v={key:p.id,title:m,icon:h,hasTitleNumberOutlined:p.fname.startsWith(c.TAGS_HIERARCHY),vaultName:l.VaultUtils.getName(p.vault),children:[]};return void 0===s[p.id]&&(s[p.id]=u),"category"===t.type&&(v.children=t.items.map(e=>r(e,{child2parent:s,parent:p.id,notesLabelById:f})).filter(e=>Boolean(e))),v}let i={},o={},s=t.map(e=>r(e,{child2parent:i,parent:null,notesLabelById:o})).filter(e=>Boolean(e));return{roots:s,child2parent:i,notesLabelById:o}}static createTreeFromEngine(e,t){let n=e[t];if(n){let r=n.children.filter(e=>e!==n.id).sort((e,t)=>e.localeCompare(t)).map(t=>this.createTreeFromEngine(e,t)),i=n.fname.split(".");return{fname:i[i.length-1],children:r}}throw new u.DendronError({message:`No note found in engine for "${t}"`})}static createTreeFromFileNames(e,t){let n=[];return e.forEach(e=>{e!==t&&e.split(".").reduce((e,t)=>{let n=(e.children=e.children||[]).find(e=>e.fname===t);return n||e.children.push(n={fname:t,children:[]}),n},{children:n})}),{fname:t,children:n}}static validateTreeNodes(e,t){if(e.fname!==t.fname)return{error:new u.DendronError({message:`Fname differs. Expected: "${e.fname}". Actual "${t.fname}"`})};if(e.children.sort((e,t)=>e.fname.localeCompare(t.fname)),t.children.sort((e,t)=>e.fname.localeCompare(t.fname)),e.children.length!==t.children.length){let n=e.children.map(e=>e.fname),r=t.children.map(e=>e.fname);return{error:new u.DendronError({message:`Mismatch at ${e.fname}'s children. Expected: "${n}". Actual "${r}"`})}}for(let[i,o]of e.children.entries()){let a=this.validateTreeNodes(o,t.children[i]);if(a.error)return{error:new u.DendronError({message:`Mismatch at ${e.fname}'s children. ${a.error.message}.`})}}return{data:void 0}}}t.TreeUtils=p,p.getAllParents=({child2parent:e,noteId:t})=>{let n=[],r=e[t];for(;r;)n.unshift(r),r=e[r];return n}},85390:function(e,t,n){"use strict";var r=this&&this.__createBinding||(Object.create?function(e,t,n,r){void 0===r&&(r=n);var i=Object.getOwnPropertyDescriptor(t,n);(!i||("get"in i?!t.__esModule:i.writable||i.configurable))&&(i={enumerable:!0,get:function(){return t[n]}}),Object.defineProperty(e,r,i)}:function(e,t,n,r){void 0===r&&(r=n),e[r]=t[n]}),i=this&&this.__exportStar||function(e,t){for(var n in e)"default"===n||Object.prototype.hasOwnProperty.call(t,n)||r(t,e,n)},o=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.globMatch=t.extractNoteChangeEntryCounts=t.extractNoteChangeEntryCountByType=t.extractNoteChangeEntriesByType=t.getJournalTitle=t.Wrap=t.normalizeUnixPath=t.cleanName=t.ConfigUtils=t.TagUtils=t.genHash=t.debounceAsyncUntilComplete=t.throttleAsyncUntilComplete=t.mapValues=t.groupBy=t.FIFOQueue=t.memoize=t.makeColorTranslucent=t.randomColor=t.isFalsy=t.isNotNull=t.isNotUndefined=t.isLineAnchor=t.isBlockAnchor=t.isNumeric=t.getSlugger=t.DUtils=t.fromSafePromise=t.fromPromise=t.fromThrowable=t.ResultAsync=t.errAsync=t.okAsync=t.Result=t.Err=t.err=t.Ok=t.ok=void 0;let a=o(n(69671)),s=o(n(96486)),u=o(n(61254)),c=o(n(1864)),l=o(n(17673)),f=o(n(97409)),d=n(25903),p=n(57761),h=n(73497),m=o(n(8322)),v=n(67949),g=n(57352),y=n(8115),b=n(86671),E=n(11367),w=n(48235);var x=n(42013);Object.defineProperty(t,"ok",{enumerable:!0,get:function(){return x.ok}}),Object.defineProperty(t,"Ok",{enumerable:!0,get:function(){return x.Ok}}),Object.defineProperty(t,"err",{enumerable:!0,get:function(){return x.err}}),Object.defineProperty(t,"Err",{enumerable:!0,get:function(){return x.Err}}),Object.defineProperty(t,"Result",{enumerable:!0,get:function(){return x.Result}}),Object.defineProperty(t,"okAsync",{enumerable:!0,get:function(){return x.okAsync}}),Object.defineProperty(t,"errAsync",{enumerable:!0,get:function(){return x.errAsync}}),Object.defineProperty(t,"ResultAsync",{enumerable:!0,get:function(){return x.ResultAsync}}),Object.defineProperty(t,"fromThrowable",{enumerable:!0,get:function(){return x.fromThrowable}}),Object.defineProperty(t,"fromPromise",{enumerable:!0,get:function(){return x.fromPromise}}),Object.defineProperty(t,"fromSafePromise",{enumerable:!0,get:function(){return x.fromSafePromise}}),i(n(14961),t),i(n(64221),t),i(n(12494),t);class _{}t.DUtils=_,_.minimatch=u.default,_.semver=f.default,_.querystring=l.default;let S=()=>new a.default;t.getSlugger=S;let C=e=>!isNaN(parseInt(e))&&isFinite(e);function A(e){return!!e&&"^"===e[0]}function D(e){return!!e&&/L\d+/.test(e)}function O(e){return!s.default.isUndefined(e)}function k(e){return!s.default.isNull(e)}function T(e){return s.default.isBoolean(e)?!1===e:s.default.some([s.default.isUndefined(e),s.default.isEmpty(e),s.default.isNull(e)])}function N(e){return s.default.reduce(e,(e,t)=>e+t.charCodeAt(0),5381)>>>0}function P(e){return h.COLORS_LIST[N(e)%h.COLORS_LIST.length]}function I(e,t){let n=e.match(/^#[\dA-Fa-f]{6}$/);return n?`${e}${(255*t).toString(16)}`:(n=e.match(/^((rgb|hsl)\( *[\d.]+ *, *[\d.]+%? *, *[\d.]+%? *)\)$/))?`${n[1]}, ${t})`:(n=e.match(/^((rgb|hsl)\( *[\d.]+ *[\d.]+%? *[\d.]+%? *)\)$/))?`${n[1]} / ${t})`:e}function M({fn:e,keyFn:t=(...e)=>e[0].toString(),shouldUpdate:n=()=>!1,maxCache:r=64}){let i=function(...r){let o=t(...r),a=i.cache.get(o);return(void 0===a||n(a,...r))&&(i.cache.drop(o),a=e(...r),i.cache.set(o,a)),a};return i.cache=new d.LruCache({maxItems:r}),i}t.isNumeric=C,t.isBlockAnchor=A,t.isLineAnchor=D,t.isNotUndefined=O,t.isNotNull=k,t.isFalsy=T,t.randomColor=P,t.makeColorTranslucent=I,t.memoize=M;class F{constructor(e){this._internalQueue=[],e&&(this._internalQueue=e)}enqueue(e){this._internalQueue.push(e)}enqueueAll(e){for(let t of e)this.enqueue(t)}dequeue(){return this._internalQueue.shift()}get length(){return this._internalQueue.length}}function R(e,t){let n=new Map;return e.forEach((e,r)=>{let i=t(e,r),o=n.get(i);void 0===o&&(o=[],n.set(i,o)),o.push(e)}),n}function L(e,t){let n=new Map;for(let[r,i]of e.entries())n.set(r,t(i));return n}function j({fn:e,keyFn:t,timeout:n}){let r=new Map;return async(...i)=>{let o=t(...i),a=r.get(o);if(void 0===a||void 0!==n&&Date.now()-a>n){r.set(o,Date.now());let s;try{s=await e(...i)}finally{r.delete(o)}return s}}}function B({fn:e,keyFn:t,timeout:n,trailing:r}){let i=new Map,o=async(...a)=>{let s=t(...a),u=i.get(s);"timeout"!==u&&"trailing"!==u&&("execute"===u&&r?i.set(s,"trailing"):(i.set(s,"timeout"),setTimeout(async()=>{i.set(s,"execute");try{await e(...a)}finally{let t=i.get(s);i.delete(s),"trailing"===t&&o(...a)}},n)))};return{debouncedFn:o,states:i}}function U(e){return m.default.hash(e)}t.FIFOQueue=F,t.groupBy=R,t.mapValues=L,t.throttleAsyncUntilComplete=j,t.debounceAsyncUntilComplete=B,t.genHash=U;class Z{static replaceTag({note:e,oldTag:t,newTag:n}){if(s.default.isUndefined(e.tags)||s.default.isString(e.tags))e.tags=n;else{let r=s.default.findIndex(e.tags,e=>e===t);n?r>=0?e.tags[r]=n:e.tags.push(n):s.default.pull(e.tags,t)}}}t.TagUtils=Z;class V{static genDefaultConfig(){let e={dev:{enablePreviewV2:!0}};return{version:5,...e,commands:(0,w.genDefaultCommandConfig)(),workspace:(0,w.genDefaultWorkspaceConfig)(),preview:(0,w.genDefaultPreviewConfig)(),publishing:(0,b.genDefaultPublishingConfig)()}}static genLatestConfig(e){let t={dev:{enablePreviewV2:!0}},n=s.default.merge((0,b.genDefaultPublishingConfig)(),{searchMode:b.SearchMode.SEARCH});return s.default.merge({version:5,...t,commands:(0,w.genDefaultCommandConfig)(),workspace:{...(0,w.genDefaultWorkspaceConfig)()},preview:(0,w.genDefaultPreviewConfig)(),publishing:n},e)}static getProp(e,t){let n=V.genDefaultConfig(),r=s.default.defaultsDeep(e,n);return r[t]}static getCommands(e){return V.getProp(e,"commands")}static getWorkspace(e){return V.getProp(e,"workspace")}static getPreview(e){let t=V.getProp(e,"preview");return s.default.isUndefined(t)?V.genDefaultConfig().preview:t}static getPublishing(e){return V.getProp(e,"publishing")}static getVaults(e){return V.getWorkspace(e).vaults}static getHooks(e){return V.getWorkspace(e).hooks}static getJournal(e){return V.getWorkspace(e).journal}static getScratch(e){return V.getWorkspace(e).scratch}static getTask(e){return V.getWorkspace(e).task}static getLookup(e){return V.getCommands(e).lookup}static getEnableFMTitle(e,t){let n=V.getPublishing(e).enableFMTitle;return t?n:V.getPreview(e).enableFMTitle}static getEnableNoteTitleForLink(e,t){let n=V.getPublishing(e).enableNoteTitleForLink;return t?n:V.getPreview(e).enableNoteTitleForLink}static getEnableKatex(e,t){let n=V.getPublishing(e).enableKatex;return t?n:V.getPreview(e).enableKatex}static getHierarchyConfig(e){return V.getPublishing(e).hierarchy}static getGithubConfig(e){return V.getPublishing(e).github}static getGiscusConfig(e){return V.getPublishing(e).giscus}static getLogo(e){return V.getPublishing(e).logoPath}static getAssetsPrefix(e){return V.getPublishing(e).assetsPrefix}static getEnableRandomlyColoredTags(e){return V.getPublishing(e).enableRandomlyColoredTags}static getEnableFrontmatterTags(e){let{config:t,shouldApplyPublishRules:n}=e,r=V.getPublishing(t).enableFrontmatterTags;return n?r:V.getPreview(t).enableFrontmatterTags}static getEnableHashesForFMTags(e){let{config:t,shouldApplyPublishRules:n}=e,r=V.getPublishing(t).enableHashesForFMTags;return n?r:V.getPreview(t).enableHashesForFMTags}static getEnablePrettlyLinks(e){return V.getPublishing(e).enablePrettyLinks}static getGATracking(e){var t;return null===(t=V.getPublishing(e).ga)||void 0===t?void 0:t.tracking}static getSiteLastModified(e){return V.getPublishing(e).enableSiteLastModified}static getSiteLogoUrl(e){let t=V.getAssetsPrefix(e),n=V.getLogo(e);if(void 0===n)return;if((0,E.isWebUri)(n))return n;let r=c.default.basename(n);if(t){let i=t.startsWith("/")?"":"/";return`${i}${t}/assets/${r}`}return`/assets/${r}`}static getEnablePrettyRefs(e,t){var n,r,i;let o=null===(i=null===(r=null===(n=null==t?void 0:t.note)||void 0===n?void 0:n.config)||void 0===r?void 0:r.global)||void 0===i?void 0:i.enablePrettyRefs;if(void 0!==o)return o;let a=V.getPublishing(e).enablePrettyRefs;return(null==t?void 0:t.shouldApplyPublishRules)?a:V.getPreview(e).enablePrettyRefs}static getEnableChildLinks(e,t){return!t||!t.note||!t.note.config||!t.note.config.global||!!s.default.isUndefined(t.note.config.global.enableChildLinks)||t.note.config.global.enableChildLinks}static getEnableBackLinks(e,t){if(t&&t.note&&t.note.config&&t.note.config.global&&s.default.isBoolean(t.note.config.global.enableBackLinks))return t.note.config.global.enableBackLinks;let n=V.getPublishing(e);return!(V.isDendronPublishingConfig(n)&&(null==t?void 0:t.shouldApplyPublishingRules)&&s.default.isBoolean(n.enableBackLinks))||n.enableBackLinks}static getHierarchyDisplayConfigForPublishing(e){let t=V.getPublishing(e).enableHierarchyDisplay,n=V.getPublishing(e).hierarchyDisplayTitle;return{hierarchyDisplay:t,hierarchyDisplayTitle:n}}static getNonNoteLinkAnchorType(e){var t;return(null===(t=this.getCommands(e).copyNoteLink.nonNoteFile)||void 0===t?void 0:t.anchorType)||"block"}static getAliasMode(e){return this.getCommands(e).copyNoteLink.aliasMode}static getVersion(e){return e.version}static getSearchMode(e){let t=V.getPublishing(e).searchMode;return t||b.SearchMode.LOOKUP}static setProp(e,t,n){s.default.set(e,t,n)}static setCommandsProp(e,t,n){let r=`commands.${t}`;s.default.set(e,r,n)}static setWorkspaceProp(e,t,n){let r=`workspace.${t}`;s.default.set(e,r,n)}static setPublishProp(e,t,n){let r=`publishing.${t}`;s.default.set(e,r,n)}static setGithubProp(e,t,n){let r=`publishing.github.${t}`;s.default.set(e,r,n)}static isDendronPublishingConfig(e){return s.default.has(e,"enableBackLinks")}static overridePublishingConfig(e,t){return{...e,publishing:t}}static unsetProp(e,t){s.default.unset(e,t)}static unsetPublishProp(e,t){let n=`publishing.${t}`;s.default.unset(e,n)}static setDuplicateNoteBehavior(e,t){V.setPublishProp(e,"duplicateNoteBehavior",t)}static unsetDuplicateNoteBehavior(e){V.unsetPublishProp(e,"duplicateNoteBehavior")}static setVaults(e,t){V.setWorkspaceProp(e,"vaults",t)}static updateVault(e,t,n){V.setVaults(e,V.getVaults(e).map(e=>d.VaultUtils.isEqualV2(t,e)?n(e):e))}static setNoteLookupProps(e,t,n){let r=`commands.lookup.note.${t}`;s.default.set(e,r,n)}static setJournalProps(e,t,n){let r=`workspace.journal.${t}`;s.default.set(e,r,n)}static setScratchProps(e,t,n){let r=`workspace.scratch.${t}`;s.default.set(e,r,n)}static setHooks(e,t){V.setWorkspaceProp(e,"hooks",t)}static setPreviewProps(e,t,n){let r=`preview.${t}`;s.default.set(e,r,n)}static setNonNoteLinkAnchorType(e,t){s.default.set(e,"commands.copyNoteLink.nonNoteFile.anchorType",t)}static setAliasMode(e,t){s.default.set(e,"commands.copyNoteLink.aliasMode",t)}static configIsValid(e){let{clientVersion:t,configVersion:n}=e;if(s.default.isUndefined(n))throw new y.DendronError({message:"Cannot determine config version. Please make sure the field 'version' is present and correct",severity:v.ERROR_SEVERITY.FATAL});let r=v.CONFIG_TO_MINIMUM_COMPAT_MAPPING[n].clientVersion;if(s.default.isUndefined(r))throw new y.DendronError({message:y.ErrorMessages.formatShouldNeverOccurMsg("Cannot find minimum compatible client version."),severity:v.ERROR_SEVERITY.FATAL});let i=s.default.findLastKey(v.CONFIG_TO_MINIMUM_COMPAT_MAPPING,e=>f.default.lte(e.clientVersion,t));if(s.default.isUndefined(i))throw new y.DendronError({message:y.ErrorMessages.formatShouldNeverOccurMsg("cannot find minimum compatible config version."),severity:v.ERROR_SEVERITY.FATAL});let o=f.default.lte(r,t),a=v.CompatUtils.isSoftMapping({configVersion:Number(i)}),u=Number(i)<=n,c=o&&u;if(c)return{isValid:c,minCompatClientVersion:r,minCompatConfigVersion:i};{let l=o?"config":"client";return{isValid:c,reason:l,isSoftMapping:a,minCompatClientVersion:r,minCompatConfigVersion:i}}}static detectMissingDefaults(e){let{config:t}=e,n=s.default.cloneDeep(t),{defaultConfig:r}=e;void 0===r&&(r=V.genDefaultConfig());let i=s.default.defaultsDeep(t,r);return{needsBackfill:!s.default.isEqual(i,n),backfilledConfig:i}}static detectDeprecatedConfigs(e){let{config:t,deprecatedPaths:n}=e,r=n.filter(e=>s.default.has(t,e));return 0===r.length?[]:r}static flattenConfigObject(e){let{obj:t,omitPaths:n}=e,r=s.default.cloneDeep(t);n&&n.length>0&&n.forEach(e=>{s.default.unset(r,e)});let i=[],o=e=>{let{obj:t,parent:n}=e,r=s.default.entries(t);r.forEach(e=>{let[r,a]=e,u=`${n?`${n}.`:""}`;s.default.isObject(a)&&!s.default.isArrayLikeObject(a)?o({obj:s.default.get(t,r),parent:`${u}${r}`}):s.default.isArrayLikeObject(a)?i.push({path:`${u}${r}`,value:JSON.stringify(a)}):i.push({path:`${u}${r}`,value:a})})};return o({obj:r}),i}static findDifference(e){let{config:t}=e,n=V.genDefaultConfig(),r=["workspace.workspaces","workspace.vaults","workspace.seeds","dev",],i=V.flattenConfigObject({obj:t,omitPaths:r}),o=V.flattenConfigObject({obj:n,omitPaths:r}),a=s.default.differenceWith(i,o,s.default.isEqual);return a}static parse(e){let t=(0,p.schemaForType)()(p.z.object({version:p.z.number(),dev:p.z.object({}).passthrough().optional(),commands:p.z.object({}).passthrough(),workspace:p.z.object({}).passthrough(),preview:p.z.object({}).passthrough(),publishing:b.publishingSchema,global:p.z.object({}).passthrough().optional()}).passthrough());return(0,p.parse)(t,e,"Invalid Dendron Config").map(e=>s.default.defaultsDeep(e,V.genDefaultConfig()))}}function z(e){return e=(e=e.replace(RegExp(s.default.escapeRegExp(c.default.sep),"g"),".").toLocaleLowerCase()).replace(/ /g,"-")}function H(e){return c.default.posix.normalize(e.replace(/\\/g,"/"))}t.ConfigUtils=V,V.getConfigDescription=e=>{var t;return null===(t=s.default.get(g.DENDRON_CONFIG,e))||void 0===t?void 0:t.desc},t.cleanName=z,t.normalizeUnixPath=H;class W{static setTimeout(e,t,...n){return setTimeout(e,t,...n)}}function $(e,t){let n=e.split(".");for(;n.length>0;){let r=d.DateTime.fromFormat(n.join("."),t);if(r.isValid)return n.join("-");n=n.length>1?n.slice(1):[]}}function G(e,t){return e.filter(e=>e.status===t)}function q(e,t){return G(e,t).length}function K(e){return{createdCount:q(e,"create"),deletedCount:q(e,"delete"),updatedCount:q(e,"update")}}function Y(e,t){return s.default.isString(e)?(0,u.default)(t,e):s.default.some(e,e=>(0,u.default)(t,e))}t.Wrap=W,t.getJournalTitle=$,t.extractNoteChangeEntriesByType=G,t.extractNoteChangeEntryCountByType=q,t.extractNoteChangeEntryCounts=K,t.globMatch=Y},14961:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.NoteLookupUtils=void 0;let i=r(n(96486)),o=n(25903),a=50;class s{static async lookup({qsRaw:e,engine:t,showDirectChildrenOnly:n}){let r=this.slashToDot(e);if(i.default.isEmpty(r))return s.fetchRootResultsFromEngine(t);let o=s.transformQueryString({query:e,onlyDirectChildren:n}),u=await t.queryNotes({qs:o.queryString,originalQS:e,onlyDirectChildren:n});return u?(u.length>a&&(u=u.slice(0,a)),u):[]}static slashToDot(e){return e.replace(/\//g,".")}static transformQueryString({query:e,onlyDirectChildren:t}){let n=e.trim();return n.startsWith("[[")&&n.endsWith("]]")?u(n):c(n,t)}}function u(e){var t;let n,r=e.slice(2,-2);return r.includes("|")&&(r=r.slice(r.indexOf("|")+1)),r.includes("#")&&(r=r.slice(0,r.indexOf("#"))),r.includes("dendron://")&&(n=null===(t=r.match(/dendron:\/\/(.*?)\//))||void 0===t?void 0:t[1],r=r.slice(r.lastIndexOf("/")+1)),{originalQuery:e,queryString:r,wasMadeFromWikiLink:!0,vaultName:n}}function c(e,t){let n=s.slashToDot(e),r;if(!t&&!n.endsWith(".")){let i=n.match(/(^[^\s]*?\.[^\s]*)/);if(i){let a=i[1];r=a.split("."),n=n.replace(a,r.join(" "))}}return t&&!n.startsWith(o.FuseExtendedSearchConstants.PrefixExactMatch)&&(n=o.FuseExtendedSearchConstants.PrefixExactMatch+n),{originalQuery:e,queryString:n,wasMadeFromWikiLink:!1,splitByDots:r,onlyDirectChildren:t}}t.NoteLookupUtils=s,s.getQsForCurrentLevel=e=>{let t=e.lastIndexOf(".");return t<0?"":e.slice(0,t+1)},s.fetchRootResultsFromEngine=async e=>{let t=await e.findNotes({fname:"root"}),n=t.flatMap(e=>e.children),r=await e.bulkGetNotes(n);return t.concat(r.data)},s.fetchRootResults=e=>{let t=o.NoteUtils.getRoots(e),n=t.flatMap(e=>e.children),r=i.default.map(n,t=>e[t]);return t.concat(r)}},64221:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.PublishUtils=void 0;let i=r(n(1864)),o=n(85390);class a{static getPublishFM(e){return e.custom?e.custom:{}}static getSEOPropsFromConfig(e){let{title:t,twitter:n,description:r,image:i}=o.ConfigUtils.getPublishing(e).seo;return{title:t,twitter:n,description:r,image:i}}static getSEOPropsFromNote(e){let{title:t,created:n,updated:r,image:i,desc:o}=e,{excerpt:a,canonicalUrl:s,noindex:u,canonicalBaseUrl:c,twitter:l}=e.custom?e.custom:{};return{title:t,excerpt:a,description:a||o||void 0,updated:r,created:n,canonicalBaseUrl:c,canonicalUrl:s,noindex:u,image:i,twitter:l}}static getCustomSiteBannerPathFromWorkspace(e){return i.default.join(e,"publish","components","BannerAlert.tsx")}static getCustomSiteBannerPathToPublish(e){return i.default.join(e,"custom","BannerAlert.tsx")}static hasCustomSiteBanner(e){return"custom"===o.ConfigUtils.getPublishing(e).siteBanner}}t.PublishUtils=a},12494:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0})},83694:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.genUUIDInsecure=t.genUUID=void 0;let r=n(78647),i=n(62961),o=12,a=23,s="0123456789abcdefghijklmnopqrstuvwxyz";t.genUUID=(0,r.customAlphabet)(s,a),t.genUUIDInsecure=(0,i.customAlphabet)(s,o)},49500:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.VaultUtils=void 0;let i=r(n(96486)),o=r(n(1864)),a=n(25903),s=n(67949),u=n(8115);class c{static getName(e){return e.seed?e.seed:e.name||o.default.basename(e.fsPath)}static isEqual(e,t,n){return i.default.isString(e)&&(e={fsPath:e}),i.default.isString(t)&&(t={fsPath:t}),this.normVaultPath({vault:e,wsRoot:n})===this.normVaultPath({vault:t,wsRoot:n})}static isEqualV2(e,t){return c.getRelPath(e)===c.getRelPath(t)}static isSelfContained(e){return!0===e.selfContained}static isSeed(e){return void 0!==e.seed}static isRemote(e){return void 0!==e.remote}static getRelPath(e){return c.isSelfContained(e)?(0,a.normalizeUnixPath)(o.default.join(e.fsPath,a.FOLDERS.NOTES)):e.workspace?o.default.join(e.workspace,e.fsPath):e.seed?o.default.join("seeds",e.seed,e.fsPath):e.fsPath}static getRelVaultRootPath(e){return c.isSelfContained(e)?e.fsPath:c.getRelPath(e)}static getVaultByName({vaults:e,vname:t}){let n=i.default.find(e,e=>t===c.getName(e));return n}static getVaultByNameOrThrow({vaults:e,vname:t}){let n=this.getVaultByName({vaults:e,vname:t});if(!n)throw new u.DendronError({message:`vault with name ${t} not found`});return n}static getVaultByDirPath({vaults:e,wsRoot:t,fsPath:n}){let r=this.normPathByWsRoot({wsRoot:t,fsPath:n}).trim(),o=(0,a.normalizeUnixPath)(r),s=i.default.find(e,e=>o===(0,a.normalizeUnixPath)(c.getRelPath(e).trim()));if(!s)throw new u.DendronError({message:"no vault found",payload:{wsRoot:t,fsPath:n,vaults:e,normPath:r,msg:"no vault found"}});return s}static getVaultByFilePath({vaults:e,wsRoot:t,fsPath:n}){return this.getVaultByDirPath({vaults:e,wsRoot:t,fsPath:o.default.dirname(n)})}static toURIPrefix(e){return s.CONSTANTS.DENDRON_DELIMETER+c.getName(e)}static toWorkspaceFolder(e){let t=c.getName(e),n=c.getRelPath(e);return{path:(0,a.normalizeUnixPath)(n),name:t===n||o.default.basename(n)===t?void 0:t}}static createForFile({filePath:e,wsRoot:t}){let n=(0,a.normalizeUnixPath)(o.default.dirname(o.default.relative(t,e)));return{fsPath:n,name:`${this.FILE_VAULT_PREFIX}${a.normalizeUnixPath}`}}static isFileVault(e){var t;return(null===(t=e.name)||void 0===t?void 0:t.startsWith(this.FILE_VAULT_PREFIX))||!1}}t.VaultUtils=c,c.matchVault=e=>{let{vault:t,vaults:n,wsRoot:r}=e,o=i.default.filter(n,e=>c.isEqual(e,t,r));return 1===o.length&&o[0]},c.matchVaultV2=e=>{let{vault:t,vaults:n}=e,r=i.default.filter(n,e=>c.isEqualV2(e,t));return 1===r.length&&r[0]},c.normVaultPath=e=>o.default.isAbsolute(e.vault.fsPath)?o.default.relative(e.wsRoot,c.getRelPath(e.vault)):c.getRelPath(e.vault),c.normPathByWsRoot=e=>o.default.relative(e.wsRoot,e.fsPath),c.FILE_VAULT_PREFIX="dir-"},94852:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.toStr=t.fromStr=void 0;let i=r(n(69606)),o=n(42013),a=n(67949),s=n(8115),u=(0,o.fromThrowable)(i.default.load,e=>new s.DendronError({message:e instanceof i.default.YAMLException?`${e.name}: ${e.message}`:"YAMLException",severity:a.ERROR_SEVERITY.FATAL,...e instanceof Error&&{innerError:e}})),c=(0,o.fromThrowable)(i.default.dump,e=>new s.DendronError({message:e instanceof i.default.YAMLException?`${e.name}: ${e.message}`:"YAMLException",severity:a.ERROR_SEVERITY.FATAL,...e instanceof Error&&{innerError:e}})),l=(e,t)=>u(e,{schema:i.default.JSON_SCHEMA,json:null!=t&&t});t.fromStr=l;let f=e=>c(e,{indent:4,schema:i.default.JSON_SCHEMA});t.toStr=f},8226:function(e,t,n){var r=n(5623);e.exports=p;var i="\0SLASH"+Math.random()+"\0",o="\0OPEN"+Math.random()+"\0",a="\0CLOSE"+Math.random()+"\0",s="\0COMMA"+Math.random()+"\0",u="\0PERIOD"+Math.random()+"\0";function c(e){return parseInt(e,10)==e?parseInt(e,10):e.charCodeAt(0)}function l(e){return e.split("\\\\").join(i).split("\\{").join(o).split("\\}").join(a).split("\\,").join(s).split("\\.").join(u)}function f(e){return e.split(i).join("\\").split(o).join("{").split(a).join("}").split(s).join(",").split(u).join(".")}function d(e){if(!e)return[""];var t=[],n=r("{","}",e);if(!n)return e.split(",");var i=n.pre,o=n.body,a=n.post,s=i.split(",");s[s.length-1]+="{"+o+"}";var u=d(a);return a.length&&(s[s.length-1]+=u.shift(),s.push.apply(s,u)),t.push.apply(t,s),t}function p(e){return e?("{}"===e.substr(0,2)&&(e="\\{\\}"+e.substr(2)),y(l(e),!0).map(f)):[]}function h(e){return"{"+e+"}"}function m(e){return/^-?0\d/.test(e)}function v(e,t){return e<=t}function g(e,t){return e>=t}function y(e,t){var n=[],i=r("{","}",e);if(!i)return[e];var o=i.pre,s=i.post.length?y(i.post,!1):[""];if(/\$$/.test(i.pre))for(var u=0;u=0;if(!b&&!E)return i.post.match(/,.*\}/)?y(e=i.pre+"{"+i.body+a+i.post):[e];if(b)w=i.body.split(/\.\./);else if(1===(w=d(i.body)).length&&1===(w=y(w[0],!1).map(h)).length)return s.map(function(e){return i.pre+w[0]+e});if(b){var w,x,_,S=c(w[0]),C=c(w[1]),A=Math.max(w[0].length,w[1].length),D=3==w.length?Math.abs(c(w[2])):1,O=v;C0){var P=Array(N+1).join("0");_=T<0?"-"+P+_.slice(1):P+_}}x.push(_)}}else{x=[];for(var I=0;I=55296&&r<=56319&&t+1=56320&&n<=57343?(r-55296)*1024+n-56320+65536:r}function X(e){return/^\n* /.test(e)}var J=1,Q=2,ee=3,et=4,en=5;function er(e,t,n,r,i,o,a,s){var u,c=0,f=null,d=!1,p=!1,h=-1!==r,m=-1,v=q(Y(e,0))&&K(Y(e,e.length-1));if(t||a)for(u=0;u=65536?u+=2:u++){if(c=Y(e,u),!W(c))return en;v=v&&G(c,f,s),f=c}else{for(u=0;u=65536?u+=2:u++){if((c=Y(e,u))===l)d=!0,h&&(p=p||u-m-1>r&&" "!==e[m+1],m=u);else if(!W(c))return en;v=v&&G(c,f,s),f=c}p=p||h&&u-m-1>r&&" "!==e[m+1]}return d||p?n>9&&X(e)?en:a?o===B?en:Q:p?et:ee:!v||a||i(e)?o===B?en:Q:J}function ei(e,t,n,r,o){e.dump=function(){if(0===t.length)return e.quotingType===B?'""':"''";if(!e.noCompatMode&&(-1!==M.indexOf(t)||F.test(t)))return e.quotingType===B?'"'+t+'"':"'"+t+"'";var a=e.indent*Math.max(1,n),s=-1===e.lineWidth?-1:Math.max(Math.min(e.lineWidth,40),e.lineWidth-a),u=r||e.flowLevel>-1&&n>=e.flowLevel;function c(t){return z(e,t)}switch(er(t,u,e.indent,s,c,e.quotingType,e.forceQuotes&&!r,o)){case J:return t;case Q:return"'"+t.replace(/'/g,"''")+"'";case ee:return"|"+eo(t,e.indent)+ea(Z(t,a));case et:return">"+eo(t,e.indent)+ea(Z(es(t,s),a));case en:return'"'+ec(t,s)+'"';default:throw new i("impossible error: invalid scalar style")}}()}function eo(e,t){var n=X(e)?String(t):"",r="\n"===e[e.length-1];return n+(r&&("\n"===e[e.length-2]||"\n"===e)?"+":r?"":"-")+"\n"}function ea(e){return"\n"===e[e.length-1]?e.slice(0,-1):e}function es(e,t){for(var n,r,i,o=/(\n+)([^\n]*)/g,a=(i=-1!==(i=e.indexOf("\n"))?i:e.length,o.lastIndex=i,eu(e.slice(0,i),t)),s="\n"===e[0]||" "===e[0];r=o.exec(e);){var u=r[1],c=r[2];n=" "===c[0],a+=u+(s||n||""===c?"":"\n")+eu(c,t),s=n}return a}function eu(e,t){if(""===e||" "===e[0])return e;for(var n,r,i=/ [^ ]/g,o=0,a=0,s=0,u="";n=i.exec(e);)(s=n.index)-o>t&&(r=a>o?a:s,u+="\n"+e.slice(o,r),o=r+1),a=s;return u+="\n",e.length-o>t&&a>o?u+=e.slice(o,a)+"\n"+e.slice(a+1):u+=e.slice(o),u.slice(1)}function ec(e){for(var t,n="",r=0,i=0;i=65536?i+=2:i++)!(t=I[r=Y(e,i)])&&W(r)?(n+=e[i],r>=65536&&(n+=e[i+1])):n+=t||L(r);return n}function el(e,t,n){var r,i,o,a="",s=e.tag;for(r=0,i=n.length;r1024&&(s+="? "),s+=e.dump+(e.condenseFlow?'"':"")+":"+(e.condenseFlow?"":" "),em(e,t,a,!1,!1)&&(s+=e.dump,u+=s)}e.tag=c,e.dump="{"+u+"}"}function ep(e,t,n,r){var o,a,s,u,c,f,d="",p=e.tag,h=Object.keys(n);if(!0===e.sortKeys)h.sort();else if("function"==typeof e.sortKeys)h.sort(e.sortKeys);else if(e.sortKeys)throw new i("sortKeys must be a boolean or a function");for(o=0,a=h.length;o1024)&&(e.dump&&l===e.dump.charCodeAt(0)?f+="?":f+="? "),f+=e.dump,c&&(f+=V(e,t)),em(e,t+1,u,!0,c)&&(e.dump&&l===e.dump.charCodeAt(0)?f+=":":f+=": ",f+=e.dump,d+=f)}e.tag=p,e.dump=d||"{}"}function eh(e,t,n){var r,o,u,c,l,f;for(u=0,c=(o=n?e.explicitTypes:e.implicitTypes).length;u tag resolver accepts not "'+f+'" style');e.dump=r}return!0}return!1}function em(e,t,n,r,o,s,u){e.tag=null,e.dump=n,eh(e,n,!1)||eh(e,n,!0);var c=a.call(e.dump),l=r;r&&(r=e.flowLevel<0||e.flowLevel>t);var f,d,p,h="[object Object]"===c||"[object Array]"===c;if(h&&(p=-1!==(d=e.duplicates.indexOf(n))),(null!==e.tag&&"?"!==e.tag||p||2!==e.indent&&t>0)&&(o=!1),p&&e.usedDuplicates[d])e.dump="*ref_"+d;else{if(h&&p&&!e.usedDuplicates[d]&&(e.usedDuplicates[d]=!0),"[object Object]"===c)r&&0!==Object.keys(e.dump).length?(ep(e,t,e.dump,o),p&&(e.dump="&ref_"+d+e.dump)):(ed(e,t,e.dump),p&&(e.dump="&ref_"+d+" "+e.dump));else if("[object Array]"===c)r&&0!==e.dump.length?(e.noArrayIndent&&!u&&t>0?ef(e,t-1,e.dump,o):ef(e,t,e.dump,o),p&&(e.dump="&ref_"+d+e.dump)):(el(e,t,e.dump),p&&(e.dump="&ref_"+d+" "+e.dump));else if("[object String]"===c)"?"!==e.tag&&ei(e,e.dump,t,s,l);else{if("[object Undefined]"===c||e.skipInvalid)return!1;throw new i("unacceptable kind of an object to dump "+c)}null!==e.tag&&"?"!==e.tag&&(f=encodeURI("!"===e.tag[0]?e.tag.slice(1):e.tag).replace(/!/g,"%21"),f="!"===e.tag[0]?"!"+f:"tag:yaml.org,2002:"===f.slice(0,18)?"!!"+f.slice(18):"!<"+f+">",e.dump=f+" "+e.dump)}return!0}function ev(e,t){var n,r,i=[],o=[];for(eg(e,i,o),n=0,r=o.length;n>10)+55296,(e-65536&1023)+56320)}for(var T=Array(256),N=Array(256),P=0;P<256;P++)T[P]=O(P)?1:0,N[P]=O(P);function I(e,t){this.input=e,this.filename=t.filename||null,this.schema=t.schema||a,this.onWarning=t.onWarning||null,this.legacy=t.legacy||!1,this.json=t.json||!1,this.listener=t.listener||null,this.implicitTypes=this.schema.compiledImplicit,this.typeMap=this.schema.compiledTypeMap,this.length=e.length,this.position=0,this.line=0,this.lineStart=0,this.lineIndent=0,this.firstTabInLine=-1,this.documents=[]}function M(e,t){var n={name:e.filename,buffer:e.input.slice(0,-1),position:e.position,line:e.line,column:e.position-e.lineStart};return n.snippet=o(n),new i(t,n)}function F(e,t){throw M(e,t)}function R(e,t){e.onWarning&&e.onWarning.call(null,M(e,t))}var L={YAML:function(e,t,n){var r,i,o;null!==e.version&&F(e,"duplication of %YAML directive"),1!==n.length&&F(e,"YAML directive accepts exactly one argument"),null===(r=/^([0-9]+)\.([0-9]+)$/.exec(n[0]))&&F(e,"ill-formed argument of the YAML directive"),i=parseInt(r[1],10),o=parseInt(r[2],10),1!==i&&F(e,"unacceptable YAML version of the document"),e.version=n[0],e.checkLineBreaks=o<2,1!==o&&2!==o&&R(e,"unsupported YAML version of the document")},TAG:function(e,t,n){var r,i;2!==n.length&&F(e,"TAG directive accepts exactly two arguments"),r=n[0],i=n[1],y.test(r)||F(e,"ill-formed tag handle (first argument) of the TAG directive"),s.call(e.tagMap,r)&&F(e,'there is a previously declared suffix for "'+r+'" tag handle'),b.test(i)||F(e,"ill-formed tag prefix (second argument) of the TAG directive");try{i=decodeURIComponent(i)}catch(o){F(e,"tag prefix is malformed: "+i)}e.tagMap[r]=i}};function j(e,t,n,r){var i,o,a,s;if(t1&&(e.result+=r.repeat("\n",t-1))}function W(e,t,n){var r,i,o,a,s,u,c,l,f,d=e.kind,p=e.result;if(_(f=e.input.charCodeAt(e.position))||S(f)||35===f||38===f||42===f||33===f||124===f||62===f||39===f||34===f||37===f||64===f||96===f||(63===f||45===f)&&(_(i=e.input.charCodeAt(e.position+1))||n&&S(i)))return!1;for(e.kind="scalar",e.result="",o=a=e.position,s=!1;0!==f;){if(58===f){if(_(i=e.input.charCodeAt(e.position+1))||n&&S(i))break}else if(35===f){if(_(r=e.input.charCodeAt(e.position-1)))break}else if(e.position===e.lineStart&&z(e)||n&&S(f))break;else if(w(f)){if(u=e.line,c=e.lineStart,l=e.lineIndent,V(e,!1,-1),e.lineIndent>=t){s=!0,f=e.input.charCodeAt(e.position);continue}e.position=a,e.line=u,e.lineStart=c,e.lineIndent=l;break}s&&(j(e,o,a,!1),H(e,e.line-u),o=a=e.position,s=!1),x(f)||(a=e.position+1),f=e.input.charCodeAt(++e.position)}return j(e,o,a,!1),!!e.result||(e.kind=d,e.result=p,!1)}function $(e,t){var n,r,i;if(39!==(n=e.input.charCodeAt(e.position)))return!1;for(e.kind="scalar",e.result="",e.position++,r=i=e.position;0!==(n=e.input.charCodeAt(e.position));)if(39===n){if(j(e,r,e.position,!0),39!==(n=e.input.charCodeAt(++e.position)))return!0;r=e.position,e.position++,i=e.position}else w(n)?(j(e,r,i,!0),H(e,V(e,!1,t)),r=i=e.position):e.position===e.lineStart&&z(e)?F(e,"unexpected end of the document within a single quoted scalar"):(e.position++,i=e.position);F(e,"unexpected end of the stream within a single quoted scalar")}function G(e,t){var n,r,i,o,a,s;if(34!==(s=e.input.charCodeAt(e.position)))return!1;for(e.kind="scalar",e.result="",e.position++,n=r=e.position;0!==(s=e.input.charCodeAt(e.position));){if(34===s)return j(e,n,e.position,!0),e.position++,!0;if(92===s){if(j(e,n,e.position,!0),w(s=e.input.charCodeAt(++e.position)))V(e,!1,t);else if(s<256&&T[s])e.result+=N[s],e.position++;else if((a=A(s))>0){for(i=a,o=0;i>0;i--)(a=C(s=e.input.charCodeAt(++e.position)))>=0?o=(o<<4)+a:F(e,"expected hexadecimal character");e.result+=k(o),e.position++}else F(e,"unknown escape sequence");n=r=e.position}else w(s)?(j(e,n,r,!0),H(e,V(e,!1,t)),n=r=e.position):e.position===e.lineStart&&z(e)?F(e,"unexpected end of the document within a double quoted scalar"):(e.position++,r=e.position)}F(e,"unexpected end of the stream within a double quoted scalar")}function q(e,t){var n,r,i,o,a,s,c,l,f,d,p,h,m,v=!0,g=e.tag,y=e.anchor,b=Object.create(null);if(91===(m=e.input.charCodeAt(e.position)))s=93,f=!1,o=[];else{if(123!==m)return!1;s=125,f=!0,o={}}for(null!==e.anchor&&(e.anchorMap[e.anchor]=o),m=e.input.charCodeAt(++e.position);0!==m;){if(V(e,!0,t),(m=e.input.charCodeAt(e.position))===s)return e.position++,e.tag=g,e.anchor=y,e.kind=f?"mapping":"sequence",e.result=o,!0;v?44===m&&F(e,"expected the node content, but found ','"):F(e,"missed comma between flow collection entries"),p=d=h=null,c=l=!1,63===m&&_(a=e.input.charCodeAt(e.position+1))&&(c=l=!0,e.position++,V(e,!0,t)),n=e.line,r=e.lineStart,i=e.position,et(e,t,u,!1,!0),p=e.tag,d=e.result,V(e,!0,t),m=e.input.charCodeAt(e.position),(l||e.line===n)&&58===m&&(c=!0,m=e.input.charCodeAt(++e.position),V(e,!0,t),et(e,t,u,!1,!0),h=e.result),f?U(e,o,b,p,d,h,n,r,i):c?o.push(U(e,null,b,p,d,h,n,r,i)):o.push(d),V(e,!0,t),44===(m=e.input.charCodeAt(e.position))?(v=!0,m=e.input.charCodeAt(++e.position)):v=!1}F(e,"unexpected end of the stream within a flow collection")}function K(e,t){var n,i,o,a,s=d,u=!1,c=!1,l=t,f=0,m=!1;if(124===(a=e.input.charCodeAt(e.position)))i=!1;else{if(62!==a)return!1;i=!0}for(e.kind="scalar",e.result="";0!==a;)if(43===(a=e.input.charCodeAt(++e.position))||45===a)d===s?s=43===a?h:p:F(e,"repeat of a chomping mode identifier");else if((o=D(a))>=0)0===o?F(e,"bad explicit indentation width of a block scalar; it cannot be less than one"):c?F(e,"repeat of an indentation width identifier"):(l=t+o-1,c=!0);else break;if(x(a)){do a=e.input.charCodeAt(++e.position);while(x(a));if(35===a)do a=e.input.charCodeAt(++e.position);while(!w(a)&&0!==a)}for(;0!==a;){for(Z(e),e.lineIndent=0,a=e.input.charCodeAt(e.position);(!c||e.lineIndentl&&(l=e.lineIndent),w(a)){f++;continue}if(e.lineIndentt)&&0!==i)F(e,"bad indentation of a sequence entry");else if(e.lineIndentt)&&(b&&(a=e.line,s=e.lineStart,u=e.position),et(e,t,f,!0,i)&&(b?g=e.result:y=e.result),b||(U(e,h,m,v,g,y,a,s,u),v=g=y=null),V(e,!0,-1),l=e.input.charCodeAt(e.position)),(e.line===o||e.lineIndent>t)&&0!==l)F(e,"bad indentation of a mapping entry");else if(e.lineIndentt?b=1:e.lineIndent===t?b=0:e.lineIndentt?b=1:e.lineIndent===t?b=0:e.lineIndent tag; it should be "scalar", not "'+e.kind+'"'),p=0,h=e.implicitTypes.length;p"),null!==e.result&&v.kind!==e.kind&&F(e,"unacceptable node kind for !<"+e.tag+'> tag; it should be "'+v.kind+'", not "'+e.kind+'"'),v.resolve(e.result,e.tag)?(e.result=v.construct(e.result,e.tag),null!==e.anchor&&(e.anchorMap[e.anchor]=e.result)):F(e,"cannot resolve a node with !<"+e.tag+"> explicit tag")}return null!==e.listener&&e.listener("close",e),null!==e.tag||null!==e.anchor||w}function en(e){var t,n,r,i,o=e.position,a=!1;for(e.version=null,e.checkLineBreaks=e.legacy,e.tagMap=Object.create(null),e.anchorMap=Object.create(null);0!==(i=e.input.charCodeAt(e.position))&&(V(e,!0,-1),i=e.input.charCodeAt(e.position),!(e.lineIndent>0)&&37===i);){for(a=!0,i=e.input.charCodeAt(++e.position),t=e.position;0!==i&&!_(i);)i=e.input.charCodeAt(++e.position);for(n=e.input.slice(t,e.position),r=[],n.length<1&&F(e,"directive name must not be less than one character in length");0!==i;){for(;x(i);)i=e.input.charCodeAt(++e.position);if(35===i){do i=e.input.charCodeAt(++e.position);while(0!==i&&!w(i));break}if(w(i))break;for(t=e.position;0!==i&&!_(i);)i=e.input.charCodeAt(++e.position);r.push(e.input.slice(t,e.position))}0!==i&&Z(e),s.call(L,n)?L[n](e,n,r):R(e,'unknown document directive "'+n+'"')}if(V(e,!0,-1),0===e.lineIndent&&45===e.input.charCodeAt(e.position)&&45===e.input.charCodeAt(e.position+1)&&45===e.input.charCodeAt(e.position+2)?(e.position+=3,V(e,!0,-1)):a&&F(e,"directives end mark is expected"),et(e,e.lineIndent-1,f,!1,!0),V(e,!0,-1),e.checkLineBreaks&&v.test(e.input.slice(o,e.position))&&R(e,"non-ASCII line breaks are interpreted as content"),e.documents.push(e.result),e.position===e.lineStart&&z(e)){46===e.input.charCodeAt(e.position)&&(e.position+=3,V(e,!0,-1));return}e.positions&&(t=r-s+(o=" ... ").length),n-r>s&&(n=r+s-(a=" ...").length),{str:o+e.slice(t,n).replace(/\t/g,"→")+a,pos:r-t+o.length}}function o(e,t){return r.repeat(" ",t-e.length)+e}function a(e,t){if(t=Object.create(t||null),!e.buffer)return null;t.maxLength||(t.maxLength=79),"number"!=typeof t.indent&&(t.indent=1),"number"!=typeof t.linesBefore&&(t.linesBefore=3),"number"!=typeof t.linesAfter&&(t.linesAfter=2);for(var n=/\r?\n|\r|\0/g,a=[0],s=[],u=-1;c=n.exec(e.buffer);)s.push(c.index),a.push(c.index+c[0].length),e.position<=c.index&&u<0&&(u=a.length-2);u<0&&(u=a.length-1);var c,l,f,d="",p=Math.min(e.line+t.linesAfter,s.length).toString().length,h=t.maxLength-(t.indent+p+3);for(l=1;l<=t.linesBefore&&!(u-l<0);l++)f=i(e.buffer,a[u-l],s[u-l],e.position-(a[u]-a[u-l]),h),d=r.repeat(" ",t.indent)+o((e.line-l+1).toString(),p)+" | "+f.str+"\n"+d;for(f=i(e.buffer,a[u],s[u],e.position,h),d+=r.repeat(" ",t.indent)+o((e.line+1).toString(),p)+" | "+f.str+"\n",d+=r.repeat("-",t.indent+p+3+f.pos)+"^\n",l=1;l<=t.linesAfter&&!(u+l>=s.length);l++)f=i(e.buffer,a[u+l],s[u+l],e.position-(a[u]-a[u+l]),h),d+=r.repeat(" ",t.indent)+o((e.line+l+1).toString(),p)+" | "+f.str+"\n";return d.replace(/\n$/,"")}e.exports=a},39365:function(e,t,n){"use strict";var r=n(59071),i=["kind","multi","resolve","construct","instanceOf","predicate","represent","representName","defaultStyle","styleAliases"],o=["scalar","sequence","mapping"];function a(e){var t={};return null!==e&&Object.keys(e).forEach(function(n){e[n].forEach(function(e){t[String(e)]=n})}),t}function s(e,t){if(Object.keys(t=t||{}).forEach(function(t){if(-1===i.indexOf(t))throw new r('Unknown option "'+t+'" is met in definition of "'+e+'" YAML type.')}),this.options=t,this.tag=e,this.kind=t.kind||null,this.resolve=t.resolve||function(){return!0},this.construct=t.construct||function(e){return e},this.instanceOf=t.instanceOf||null,this.predicate=t.predicate||null,this.represent=t.represent||null,this.representName=t.representName||null,this.defaultStyle=t.defaultStyle||null,this.multi=t.multi||!1,this.styleAliases=a(t.styleAliases||null),-1===o.indexOf(this.kind))throw new r('Unknown kind "'+this.kind+'" is specified for "'+e+'" YAML type.')}e.exports=s},37478:function(e,t,n){"use strict";var r=n(39365),i="ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789+/=\n\r";function o(e){if(null===e)return!1;var t,n,r=0,o=e.length,a=i;for(n=0;n64)){if(t<0)return!1;r+=6}return r%8==0}function a(e){var t,n,r=e.replace(/[\r\n=]/g,""),o=r.length,a=i,s=0,u=[];for(t=0;t>16&255),u.push(s>>8&255),u.push(255&s)),s=s<<6|a.indexOf(r.charAt(t));return 0==(n=o%4*6)?(u.push(s>>16&255),u.push(s>>8&255),u.push(255&s)):18===n?(u.push(s>>10&255),u.push(s>>2&255)):12===n&&u.push(s>>4&255),new Uint8Array(u)}function s(e){var t,n,r="",o=0,a=e.length,s=i;for(t=0;t>18&63],r+=s[o>>12&63],r+=s[o>>6&63],r+=s[63&o]),o=(o<<8)+e[t];return 0==(n=a%3)?(r+=s[o>>18&63],r+=s[o>>12&63],r+=s[o>>6&63],r+=s[63&o]):2===n?(r+=s[o>>10&63],r+=s[o>>4&63],r+=s[o<<2&63],r+=s[64]):1===n&&(r+=s[o>>2&63],r+=s[o<<4&63],r+=s[64],r+=s[64]),r}function u(e){return"[object Uint8Array]"===Object.prototype.toString.call(e)}e.exports=new r("tag:yaml.org,2002:binary",{kind:"scalar",resolve:o,construct:a,predicate:u,represent:s})},96284:function(e,t,n){"use strict";var r=n(39365);function i(e){if(null===e)return!1;var t=e.length;return 4===t&&("true"===e||"True"===e||"TRUE"===e)||5===t&&("false"===e||"False"===e||"FALSE"===e)}function o(e){return"true"===e||"True"===e||"TRUE"===e}function a(e){return"[object Boolean]"===Object.prototype.toString.call(e)}e.exports=new r("tag:yaml.org,2002:bool",{kind:"scalar",resolve:i,construct:o,predicate:a,represent:{lowercase:function(e){return e?"true":"false"},uppercase:function(e){return e?"TRUE":"FALSE"},camelcase:function(e){return e?"True":"False"}},defaultStyle:"lowercase"})},25447:function(e,t,n){"use strict";var r=n(15722),i=n(39365),o=RegExp("^(?:[-+]?(?:[0-9][0-9_]*)(?:\\.[0-9_]*)?(?:[eE][-+]?[0-9]+)?|\\.[0-9_]+(?:[eE][-+]?[0-9]+)?|[-+]?\\.(?:inf|Inf|INF)|\\.(?:nan|NaN|NAN))$");function a(e){return!!(null!==e&&o.test(e)&&"_"!==e[e.length-1])}function s(e){var t,n;return(n="-"===(t=e.replace(/_/g,"").toLowerCase())[0]?-1:1,"+-".indexOf(t[0])>=0&&(t=t.slice(1)),".inf"===t)?1===n?Number.POSITIVE_INFINITY:Number.NEGATIVE_INFINITY:".nan"===t?NaN:n*parseFloat(t,10)}var u=/^[-+]?[0-9]+e/;function c(e,t){var n;if(isNaN(e))switch(t){case"lowercase":return".nan";case"uppercase":return".NAN";case"camelcase":return".NaN"}else if(Number.POSITIVE_INFINITY===e)switch(t){case"lowercase":return".inf";case"uppercase":return".INF";case"camelcase":return".Inf"}else if(Number.NEGATIVE_INFINITY===e)switch(t){case"lowercase":return"-.inf";case"uppercase":return"-.INF";case"camelcase":return"-.Inf"}else if(r.isNegativeZero(e))return"-0.0";return n=e.toString(10),u.test(n)?n.replace("e",".e"):n}function l(e){return"[object Number]"===Object.prototype.toString.call(e)&&(e%1!=0||r.isNegativeZero(e))}e.exports=new i("tag:yaml.org,2002:float",{kind:"scalar",resolve:a,construct:s,predicate:l,represent:c,defaultStyle:"lowercase"})},52651:function(e,t,n){"use strict";var r=n(15722),i=n(39365);function o(e){return 48<=e&&e<=57||65<=e&&e<=70||97<=e&&e<=102}function a(e){return 48<=e&&e<=55}function s(e){return 48<=e&&e<=57}function u(e){if(null===e)return!1;var t,n=e.length,r=0,i=!1;if(!n)return!1;if(("-"===(t=e[r])||"+"===t)&&(t=e[++r]),"0"===t){if(r+1===n)return!0;if("b"===(t=e[++r])){for(r++;r=0?"0b"+e.toString(2):"-0b"+e.toString(2).slice(1)},octal:function(e){return e>=0?"0o"+e.toString(8):"-0o"+e.toString(8).slice(1)},decimal:function(e){return e.toString(10)},hexadecimal:function(e){return e>=0?"0x"+e.toString(16).toUpperCase():"-0x"+e.toString(16).toUpperCase().slice(1)}},defaultStyle:"decimal",styleAliases:{binary:[2,"bin"],octal:[8,"oct"],decimal:[10,"dec"],hexadecimal:[16,"hex"]}})},78185:function(e,t,n){"use strict";var r=n(39365);e.exports=new r("tag:yaml.org,2002:map",{kind:"mapping",construct:function(e){return null!==e?e:{}}})},14298:function(e,t,n){"use strict";var r=n(39365);function i(e){return"<<"===e||null===e}e.exports=new r("tag:yaml.org,2002:merge",{kind:"scalar",resolve:i})},35449:function(e,t,n){"use strict";var r=n(39365);function i(e){if(null===e)return!0;var t=e.length;return 1===t&&"~"===e||4===t&&("null"===e||"Null"===e||"NULL"===e)}function o(){return null}function a(e){return null===e}e.exports=new r("tag:yaml.org,2002:null",{kind:"scalar",resolve:i,construct:o,predicate:a,represent:{canonical:function(){return"~"},lowercase:function(){return"null"},uppercase:function(){return"NULL"},camelcase:function(){return"Null"},empty:function(){return""}},defaultStyle:"lowercase"})},33576:function(e,t,n){"use strict";var r=n(39365),i=Object.prototype.hasOwnProperty,o=Object.prototype.toString;function a(e){if(null===e)return!0;var t,n,r,a,s,u=[],c=e;for(t=0,n=c.length;t(b(t),(!!n.nocomment||"#"!==t.charAt(0))&&new _(t,n).match(e));e.exports=r;let i=n(50385);r.sep=i.sep;let o=Symbol("globstar **");r.GLOBSTAR=o;let a=n(8226),s={"!":{open:"(?:(?!(?:",close:"))[^/]*?)"},"?":{open:"(?:",close:")?"},"+":{open:"(?:",close:")+"},"*":{open:"(?:",close:")*"},"@":{open:"(?:",close:")"}},u="[^/]",c=u+"*?",l="(?:(?!(?:\\/|^)(?:\\.{1,2})($|\\/)).)*?",f="(?:(?!(?:\\/|^)\\.).)*?",d=e=>e.split("").reduce((e,t)=>(e[t]=!0,e),{}),p=d("().*{}+?[]^$\\!"),h=d("[.("),m=/\/+/;r.filter=(e,t={})=>(n,i,o)=>r(n,e,t);let v=(e,t={})=>{let n={};return Object.keys(e).forEach(t=>n[t]=e[t]),Object.keys(t).forEach(e=>n[e]=t[e]),n};r.defaults=e=>{if(!e||"object"!=typeof e||!Object.keys(e).length)return r;let t=r,n=(n,r,i)=>t(n,r,v(e,i));return n.Minimatch=class extends t.Minimatch{constructor(t,n){super(t,v(e,n))}},n.Minimatch.defaults=n=>t.defaults(v(e,n)).Minimatch,n.filter=(n,r)=>t.filter(n,v(e,r)),n.defaults=n=>t.defaults(v(e,n)),n.makeRe=(n,r)=>t.makeRe(n,v(e,r)),n.braceExpand=(n,r)=>t.braceExpand(n,v(e,r)),n.match=(n,r,i)=>t.match(n,r,v(e,i)),n},r.braceExpand=(e,t)=>g(e,t);let g=(e,t={})=>(b(e),t.nobrace||!/\{(?:(?!\{).)*\}/.test(e))?[e]:a(e),y=65536,b=e=>{if("string"!=typeof e)throw TypeError("invalid pattern");if(e.length>y)throw TypeError("pattern is too long")},E=Symbol("subparse");r.makeRe=(e,t)=>new _(e,t||{}).makeRe(),r.match=(e,t,n={})=>{let r=new _(t,n);return e=e.filter(e=>r.match(e)),r.options.nonull&&!e.length&&e.push(t),e};let w=e=>e.replace(/\\(.)/g,"$1"),x=e=>e.replace(/[-[\]{}()*+?.,\\^$|#\s]/g,"\\$&");class _{constructor(e,t){b(e),t||(t={}),this.options=t,this.set=[],this.pattern=e,this.windowsPathsNoEscape=!!t.windowsPathsNoEscape||!1===t.allowWindowsEscape,this.windowsPathsNoEscape&&(this.pattern=this.pattern.replace(/\\/g,"/")),this.regexp=null,this.negate=!1,this.comment=!1,this.empty=!1,this.partial=!!t.partial,this.make()}debug(){}make(){let e=this.pattern,t=this.options;if(!t.nocomment&&"#"===e.charAt(0)){this.comment=!0;return}if(!e){this.empty=!0;return}this.parseNegate();let n=this.globSet=this.braceExpand();t.debug&&(this.debug=(...e)=>console.error(...e)),this.debug(this.pattern,n),n=this.globParts=n.map(e=>e.split(m)),this.debug(this.pattern,n),n=n.map((e,t,n)=>e.map(this.parse,this)),this.debug(this.pattern,n),n=n.filter(e=>-1===e.indexOf(!1)),this.debug(this.pattern,n),this.set=n}parseNegate(){if(this.options.nonegate)return;let e=this.pattern,t=!1,n=0;for(let r=0;r>> no match, partial?",e,d,t,p),d===s))return!0;return!1}if("string"==typeof l?(c=f===l,this.debug("string match",l,f,c)):(c=f.match(l),this.debug("pattern match",l,f,c)),!c)return!1}if(i===s&&a===u)return!0;if(i===s)return n;if(a===u)return i===s-1&&""===e[i];throw Error("wtf?")}braceExpand(){return g(this.pattern,this.options)}parse(e,t){b(e);let n=this.options;if("**"===e){if(!n.noglobstar)return o;e="*"}if(""===e)return"";let r="",i=!!n.nocase,a=!1,l=[],f=[],d,m=!1,v=-1,g=-1,y,x,_,S="."===e.charAt(0)?"":n.dot?"(?!(?:^|\\/)\\.{1,2}(?:$|\\/))":"(?!\\.)",C=()=>{if(d){switch(d){case"*":r+=c,i=!0;break;case"?":r+=u,i=!0;break;default:r+="\\"+d}this.debug("clearStateChar %j %j",d,r),d=!1}};for(let A=0,D;A(n||(n="\\"),t+t+n+"|")),this.debug("tail=%j\n %s",k,k,x,r);let T="*"===x.type?c:"?"===x.type?u:"\\"+x.type;i=!0,r=r.slice(0,x.reStart)+T+"\\("+k}C(),a&&(r+="\\\\");let N=h[r.charAt(0)];for(let P=f.length-1;P>-1;P--){let I=f[P],M=r.slice(0,I.reStart),F=r.slice(I.reStart,I.reEnd-8),R=r.slice(I.reEnd),L=r.slice(I.reEnd-8,I.reEnd)+R,j=M.split("(").length-1,B=R;for(let U=0;U((e=e.map(e=>"string"==typeof e?x(e):e===o?o:e._src).reduce((e,t)=>(e[e.length-1]===o&&t===o||e.push(t),e),[])).forEach((t,r)=>{t===o&&e[r-1]!==o&&(0===r?e.length>1?e[r+1]="(?:\\/|"+n+"\\/)?"+e[r+1]:e[r]=n:r===e.length-1?e[r-1]+="(?:\\/|"+n+")?":(e[r-1]+="(?:\\/|\\/"+n+"\\/)"+e[r+1],e[r+1]=o))}),e.filter(e=>e!==o).join("/"))).join("|");i="^(?:"+i+")$",this.negate&&(i="^(?!"+i+").*$");try{this.regexp=RegExp(i,r)}catch(a){this.regexp=!1}return this.regexp}match(e,t=this.partial){if(this.debug("match",e,this.pattern),this.comment)return!1;if(this.empty)return""===e;if("/"===e&&t)return!0;let n=this.options;"/"!==i.sep&&(e=e.split(i.sep).join("/")),e=e.split(m),this.debug(this.pattern,"split",e);let r=this.set;this.debug(this.pattern,"set",r);let o;for(let a=e.length-1;a>=0&&!(o=e[a]);a--);for(let s=0;s="===this.operator||">"===this.operator)&&(">="===e.operator||">"===e.operator),r=("<="===this.operator||"<"===this.operator)&&("<="===e.operator||"<"===e.operator),o=this.semver.version===e.semver.version,a=(">="===this.operator||"<="===this.operator)&&(">="===e.operator||"<="===e.operator),s=u(this.semver,"<",e.semver,t)&&(">="===this.operator||">"===this.operator)&&("<="===e.operator||"<"===e.operator),c=u(this.semver,">",e.semver,t)&&("<="===this.operator||"<"===this.operator)&&(">="===e.operator||">"===e.operator);return n||r||o&&a||s||c}}e.exports=i;let o=n(68508),{re:a,t:s}=n(25700),u=n(22290),c=n(19231),l=n(71823),f=n(78916)},78916:function(e,t,n){class r{constructor(e,t){if(t=a(t),e instanceof r){if(!!t.loose===e.loose&&!!t.includePrerelease===e.includePrerelease)return e;return new r(e.raw,t)}if(e instanceof s)return this.raw=e.value,this.set=[[e]],this.format(),this;if(this.options=t,this.loose=!!t.loose,this.includePrerelease=!!t.includePrerelease,this.raw=e,this.set=e.split(/\s*\|\|\s*/).map(e=>this.parseRange(e.trim())).filter(e=>e.length),!this.set.length)throw TypeError(`Invalid SemVer Range: ${e}`);if(this.set.length>1){let n=this.set[0];if(this.set=this.set.filter(e=>!m(e[0])),0===this.set.length)this.set=[n];else if(this.set.length>1){for(let i of this.set)if(1===i.length&&v(i[0])){this.set=[i];break}}}this.format()}format(){return this.range=this.set.map(e=>e.join(" ").trim()).join("||").trim(),this.range}toString(){return this.range}parseRange(e){e=e.trim();let t=Object.keys(this.options).join(","),n=`parseRange:${t}:${e}`,r=o.get(n);if(r)return r;let i=this.options.loose,a=i?l[f.HYPHENRANGELOOSE]:l[f.HYPHENRANGE];e=e.replace(a,O(this.options.includePrerelease)),u("hyphen replace",e),u("comparator trim",e=e.replace(l[f.COMPARATORTRIM],d),l[f.COMPARATORTRIM]),e=(e=(e=e.replace(l[f.TILDETRIM],p)).replace(l[f.CARETTRIM],h)).split(/\s+/).join(" ");let c=i?l[f.COMPARATORLOOSE]:l[f.COMPARATOR],v=e.split(" ").map(e=>y(e,this.options)).join(" ").split(/\s+/).map(e=>D(e,this.options)).filter(this.options.loose?e=>!!e.match(c):()=>!0).map(e=>new s(e,this.options));v.length;let g=new Map;for(let b of v){if(m(b))return[b];g.set(b.value,b)}g.size>1&&g.has("")&&g.delete("");let E=[...g.values()];return o.set(n,E),E}intersects(e,t){if(!(e instanceof r))throw TypeError("a Range is required");return this.set.some(n=>g(n,t)&&e.set.some(e=>g(e,t)&&n.every(n=>e.every(e=>n.intersects(e,t)))))}test(e){if(!e)return!1;if("string"==typeof e)try{e=new c(e,this.options)}catch(t){return!1}for(let n=0;n"<0.0.0-0"===e.value,v=e=>""===e.value,g=(e,t)=>{let n=!0,r=e.slice(),i=r.pop();for(;n&&r.length;)n=r.every(e=>i.intersects(e,t)),i=r.pop();return n},y=(e,t)=>(u("comp",e,t),e=x(e,t),u("caret",e),e=E(e,t),u("tildes",e),e=S(e,t),u("xrange",e),e=A(e,t),u("stars",e),e),b=e=>!e||"x"===e.toLowerCase()||"*"===e,E=(e,t)=>e.trim().split(/\s+/).map(e=>w(e,t)).join(" "),w=(e,t)=>{let n=t.loose?l[f.TILDELOOSE]:l[f.TILDE];return e.replace(n,(t,n,r,i,o)=>{u("tilde",e,t,n,r,i,o);let a;return b(n)?a="":b(r)?a=`>=${n}.0.0 <${+n+1}.0.0-0`:b(i)?a=`>=${n}.${r}.0 <${n}.${+r+1}.0-0`:o?(u("replaceTilde pr",o),a=`>=${n}.${r}.${i}-${o} <${n}.${+r+1}.0-0`):a=`>=${n}.${r}.${i} <${n}.${+r+1}.0-0`,u("tilde return",a),a})},x=(e,t)=>e.trim().split(/\s+/).map(e=>_(e,t)).join(" "),_=(e,t)=>{u("caret",e,t);let n=t.loose?l[f.CARETLOOSE]:l[f.CARET],r=t.includePrerelease?"-0":"";return e.replace(n,(t,n,i,o,a)=>{u("caret",e,t,n,i,o,a);let s;return b(n)?s="":b(i)?s=`>=${n}.0.0${r} <${+n+1}.0.0-0`:b(o)?s="0"===n?`>=${n}.${i}.0${r} <${n}.${+i+1}.0-0`:`>=${n}.${i}.0${r} <${+n+1}.0.0-0`:a?(u("replaceCaret pr",a),s="0"===n?"0"===i?`>=${n}.${i}.${o}-${a} <${n}.${i}.${+o+1}-0`:`>=${n}.${i}.${o}-${a} <${n}.${+i+1}.0-0`:`>=${n}.${i}.${o}-${a} <${+n+1}.0.0-0`):(u("no pr"),s="0"===n?"0"===i?`>=${n}.${i}.${o}${r} <${n}.${i}.${+o+1}-0`:`>=${n}.${i}.${o}${r} <${n}.${+i+1}.0-0`:`>=${n}.${i}.${o} <${+n+1}.0.0-0`),u("caret return",s),s})},S=(e,t)=>(u("replaceXRanges",e,t),e.split(/\s+/).map(e=>C(e,t)).join(" ")),C=(e,t)=>{e=e.trim();let n=t.loose?l[f.XRANGELOOSE]:l[f.XRANGE];return e.replace(n,(n,r,i,o,a,s)=>{u("xRange",e,n,r,i,o,a,s);let c=b(i),l=c||b(o),f=l||b(a),d=f;return"="===r&&d&&(r=""),s=t.includePrerelease?"-0":"",c?n=">"===r||"<"===r?"<0.0.0-0":"*":r&&d?(l&&(o=0),a=0,">"===r?(r=">=",l?(i=+i+1,o=0,a=0):(o=+o+1,a=0)):"<="===r&&(r="<",l?i=+i+1:o=+o+1),"<"===r&&(s="-0"),n=`${r+i}.${o}.${a}${s}`):l?n=`>=${i}.0.0${s} <${+i+1}.0.0-0`:f&&(n=`>=${i}.${o}.0${s} <${i}.${+o+1}.0-0`),u("xRange return",n),n})},A=(e,t)=>(u("replaceStars",e,t),e.trim().replace(l[f.STAR],"")),D=(e,t)=>(u("replaceGTE0",e,t),e.trim().replace(l[t.includePrerelease?f.GTE0PRE:f.GTE0],"")),O=e=>(t,n,r,i,o,a,s,u,c,l,f,d,p)=>`${n=b(r)?"":b(i)?`>=${r}.0.0${e?"-0":""}`:b(o)?`>=${r}.${i}.0${e?"-0":""}`:a?`>=${n}`:`>=${n}${e?"-0":""}`} ${u=b(c)?"":b(l)?`<${+c+1}.0.0-0`:b(f)?`<${c}.${+l+1}.0-0`:d?`<=${c}.${l}.${f}-${d}`:e?`<${c}.${l}.${+f+1}-0`:`<=${u}`}`.trim(),k=(e,t,n)=>{for(let r=0;r0){let o=e[i].semver;if(o.major===t.major&&o.minor===t.minor&&o.patch===t.patch)return!0}return!1}return!0}},71823:function(e,t,n){let r=n(19231),{MAX_LENGTH:i,MAX_SAFE_INTEGER:o}=n(90817),{re:a,t:s}=n(25700),u=n(68508),{compareIdentifiers:c}=n(54822);class l{constructor(e,t){if(t=u(t),e instanceof l){if(!!t.loose===e.loose&&!!t.includePrerelease===e.includePrerelease)return e;e=e.version}else if("string"!=typeof e)throw TypeError(`Invalid Version: ${e}`);if(e.length>i)throw TypeError(`version is longer than ${i} characters`);r("SemVer",e,t),this.options=t,this.loose=!!t.loose,this.includePrerelease=!!t.includePrerelease;let n=e.trim().match(t.loose?a[s.LOOSE]:a[s.FULL]);if(!n)throw TypeError(`Invalid Version: ${e}`);if(this.raw=e,this.major=+n[1],this.minor=+n[2],this.patch=+n[3],this.major>o||this.major<0)throw TypeError("Invalid major version");if(this.minor>o||this.minor<0)throw TypeError("Invalid minor version");if(this.patch>o||this.patch<0)throw TypeError("Invalid patch version");n[4]?this.prerelease=n[4].split(".").map(e=>{if(/^[0-9]+$/.test(e)){let t=+e;if(t>=0&&t=0;)"number"==typeof this.prerelease[n]&&(this.prerelease[n]++,n=-2);-1===n&&this.prerelease.push(0)}t&&(this.prerelease[0]===t?isNaN(this.prerelease[1])&&(this.prerelease=[t,0]):this.prerelease=[t,0]);break;default:throw Error(`invalid increment argument: ${e}`)}return this.format(),this.raw=this.version,this}}e.exports=l},90569:function(e,t,n){let r=n(4557),i=(e,t)=>{let n=r(e.trim().replace(/^[=v]+/,""),t);return n?n.version:null};e.exports=i},22290:function(e,t,n){let r=n(76978),i=n(20560),o=n(47143),a=n(618),s=n(39964),u=n(70486),c=(e,t,n,c)=>{switch(t){case"===":return"object"==typeof e&&(e=e.version),"object"==typeof n&&(n=n.version),e===n;case"!==":return"object"==typeof e&&(e=e.version),"object"==typeof n&&(n=n.version),e!==n;case"":case"=":case"==":return r(e,n,c);case"!=":return i(e,n,c);case">":return o(e,n,c);case">=":return a(e,n,c);case"<":return s(e,n,c);case"<=":return u(e,n,c);default:throw TypeError(`Invalid operator: ${t}`)}};e.exports=c},18354:function(e,t,n){let r=n(71823),i=n(4557),{re:o,t:a}=n(25700),s=(e,t)=>{if(e instanceof r)return e;if("number"==typeof e&&(e=String(e)),"string"!=typeof e)return null;let n=null;if((t=t||{}).rtl){let s;for(;(s=o[a.COERCERTL].exec(e))&&(!n||n.index+n[0].length!==e.length);)n&&s.index+s[0].length===n.index+n[0].length||(n=s),o[a.COERCERTL].lastIndex=s.index+s[1].length+s[2].length;o[a.COERCERTL].lastIndex=-1}else n=e.match(o[a.COERCE]);return null===n?null:i(`${n[2]}.${n[3]||"0"}.${n[4]||"0"}`,t)};e.exports=s},70479:function(e,t,n){let r=n(71823),i=(e,t,n)=>{let i=new r(e,n),o=new r(t,n);return i.compare(o)||i.compareBuild(o)};e.exports=i},38280:function(e,t,n){let r=n(71787),i=(e,t)=>r(e,t,!0);e.exports=i},71787:function(e,t,n){let r=n(71823),i=(e,t,n)=>new r(e,n).compare(new r(t,n));e.exports=i},40234:function(e,t,n){let r=n(4557),i=n(76978),o=(e,t)=>{if(i(e,t))return null;{let n=r(e),o=r(t),a=n.prerelease.length||o.prerelease.length,s=a?"pre":"",u=a?"prerelease":"";for(let c in n)if(("major"===c||"minor"===c||"patch"===c)&&n[c]!==o[c])return s+c;return u}};e.exports=o},76978:function(e,t,n){let r=n(71787),i=(e,t,n)=>0===r(e,t,n);e.exports=i},47143:function(e,t,n){let r=n(71787),i=(e,t,n)=>r(e,t,n)>0;e.exports=i},618:function(e,t,n){let r=n(71787),i=(e,t,n)=>r(e,t,n)>=0;e.exports=i},69986:function(e,t,n){let r=n(71823),i=(e,t,n,i)=>{"string"==typeof n&&(i=n,n=void 0);try{return new r(e,n).inc(t,i).version}catch(o){return null}};e.exports=i},39964:function(e,t,n){let r=n(71787),i=(e,t,n)=>0>r(e,t,n);e.exports=i},70486:function(e,t,n){let r=n(71787),i=(e,t,n)=>0>=r(e,t,n);e.exports=i},14150:function(e,t,n){let r=n(71823),i=(e,t)=>new r(e,t).major;e.exports=i},81994:function(e,t,n){let r=n(71823),i=(e,t)=>new r(e,t).minor;e.exports=i},20560:function(e,t,n){let r=n(71787),i=(e,t,n)=>0!==r(e,t,n);e.exports=i},4557:function(e,t,n){let{MAX_LENGTH:r}=n(90817),{re:i,t:o}=n(25700),a=n(71823),s=n(68508),u=(e,t)=>{if(t=s(t),e instanceof a)return e;if("string"!=typeof e||e.length>r)return null;let n=t.loose?i[o.LOOSE]:i[o.FULL];if(!n.test(e))return null;try{return new a(e,t)}catch(u){return null}};e.exports=u},22931:function(e,t,n){let r=n(71823),i=(e,t)=>new r(e,t).patch;e.exports=i},13396:function(e,t,n){let r=n(4557),i=(e,t)=>{let n=r(e,t);return n&&n.prerelease.length?n.prerelease:null};e.exports=i},60651:function(e,t,n){let r=n(71787),i=(e,t,n)=>r(t,e,n);e.exports=i},66332:function(e,t,n){let r=n(70479),i=(e,t)=>e.sort((e,n)=>r(n,e,t));e.exports=i},15174:function(e,t,n){let r=n(78916),i=(e,t,n)=>{try{t=new r(t,n)}catch(i){return!1}return t.test(e)};e.exports=i},9259:function(e,t,n){let r=n(70479),i=(e,t)=>e.sort((e,n)=>r(e,n,t));e.exports=i},44777:function(e,t,n){let r=n(4557),i=(e,t)=>{let n=r(e,t);return n?n.version:null};e.exports=i},97409:function(e,t,n){let r=n(25700);e.exports={re:r.re,src:r.src,tokens:r.t,SEMVER_SPEC_VERSION:n(90817).SEMVER_SPEC_VERSION,SemVer:n(71823),compareIdentifiers:n(54822).compareIdentifiers,rcompareIdentifiers:n(54822).rcompareIdentifiers,parse:n(4557),valid:n(44777),clean:n(90569),inc:n(69986),diff:n(40234),major:n(14150),minor:n(81994),patch:n(22931),prerelease:n(13396),compare:n(71787),rcompare:n(60651),compareLoose:n(38280),compareBuild:n(70479),sort:n(9259),rsort:n(66332),gt:n(47143),lt:n(39964),eq:n(76978),neq:n(20560),gte:n(618),lte:n(70486),cmp:n(22290),coerce:n(18354),Comparator:n(31911),Range:n(78916),satisfies:n(15174),toComparators:n(91911),maxSatisfying:n(53342),minSatisfying:n(8689),minVersion:n(51329),validRange:n(20114),outside:n(16832),gtr:n(98782),ltr:n(45517),intersects:n(66199),simplifyRange:n(31213),subset:n(24045)}},90817:function(e){let t="2.0.0",n=256,r=Number.MAX_SAFE_INTEGER||9007199254740991,i=16;e.exports={SEMVER_SPEC_VERSION:t,MAX_LENGTH:n,MAX_SAFE_INTEGER:r,MAX_SAFE_COMPONENT_LENGTH:i}},19231:function(e,t,n){var r=n(83454);let i="object"==typeof r&&r.env&&r.env.NODE_DEBUG&&/\bsemver\b/i.test(r.env.NODE_DEBUG)?(...e)=>console.error("SEMVER",...e):()=>{};e.exports=i},54822:function(e){let t=/^[0-9]+$/,n=(e,n)=>{let r=t.test(e),i=t.test(n);return r&&i&&(e=+e,n=+n),e===n?0:r&&!i?-1:i&&!r?1:en(t,e);e.exports={compareIdentifiers:n,rcompareIdentifiers:r}},68508:function(e){let t=["includePrerelease","loose","rtl"],n=e=>e?"object"!=typeof e?{loose:!0}:t.filter(t=>e[t]).reduce((e,t)=>(e[t]=!0,e),{}):{};e.exports=n},25700:function(e,t,n){let{MAX_SAFE_COMPONENT_LENGTH:r}=n(90817),i=n(19231);t=e.exports={};let o=t.re=[],a=t.src=[],s=t.t={},u=0,c=(e,t,n)=>{let r=u++;i(r,t),s[e]=r,a[r]=t,o[r]=RegExp(t,n?"g":void 0)};c("NUMERICIDENTIFIER","0|[1-9]\\d*"),c("NUMERICIDENTIFIERLOOSE","[0-9]+"),c("NONNUMERICIDENTIFIER","\\d*[a-zA-Z-][a-zA-Z0-9-]*"),c("MAINVERSION",`(${a[s.NUMERICIDENTIFIER]})\\.(${a[s.NUMERICIDENTIFIER]})\\.(${a[s.NUMERICIDENTIFIER]})`),c("MAINVERSIONLOOSE",`(${a[s.NUMERICIDENTIFIERLOOSE]})\\.(${a[s.NUMERICIDENTIFIERLOOSE]})\\.(${a[s.NUMERICIDENTIFIERLOOSE]})`),c("PRERELEASEIDENTIFIER",`(?:${a[s.NUMERICIDENTIFIER]}|${a[s.NONNUMERICIDENTIFIER]})`),c("PRERELEASEIDENTIFIERLOOSE",`(?:${a[s.NUMERICIDENTIFIERLOOSE]}|${a[s.NONNUMERICIDENTIFIER]})`),c("PRERELEASE",`(?:-(${a[s.PRERELEASEIDENTIFIER]}(?:\\.${a[s.PRERELEASEIDENTIFIER]})*))`),c("PRERELEASELOOSE",`(?:-?(${a[s.PRERELEASEIDENTIFIERLOOSE]}(?:\\.${a[s.PRERELEASEIDENTIFIERLOOSE]})*))`),c("BUILDIDENTIFIER","[0-9A-Za-z-]+"),c("BUILD",`(?:\\+(${a[s.BUILDIDENTIFIER]}(?:\\.${a[s.BUILDIDENTIFIER]})*))`),c("FULLPLAIN",`v?${a[s.MAINVERSION]}${a[s.PRERELEASE]}?${a[s.BUILD]}?`),c("FULL",`^${a[s.FULLPLAIN]}$`),c("LOOSEPLAIN",`[v=\\s]*${a[s.MAINVERSIONLOOSE]}${a[s.PRERELEASELOOSE]}?${a[s.BUILD]}?`),c("LOOSE",`^${a[s.LOOSEPLAIN]}$`),c("GTLT","((?:<|>)?=?)"),c("XRANGEIDENTIFIERLOOSE",`${a[s.NUMERICIDENTIFIERLOOSE]}|x|X|\\*`),c("XRANGEIDENTIFIER",`${a[s.NUMERICIDENTIFIER]}|x|X|\\*`),c("XRANGEPLAIN",`[v=\\s]*(${a[s.XRANGEIDENTIFIER]})(?:\\.(${a[s.XRANGEIDENTIFIER]})(?:\\.(${a[s.XRANGEIDENTIFIER]})(?:${a[s.PRERELEASE]})?${a[s.BUILD]}?)?)?`),c("XRANGEPLAINLOOSE",`[v=\\s]*(${a[s.XRANGEIDENTIFIERLOOSE]})(?:\\.(${a[s.XRANGEIDENTIFIERLOOSE]})(?:\\.(${a[s.XRANGEIDENTIFIERLOOSE]})(?:${a[s.PRERELEASELOOSE]})?${a[s.BUILD]}?)?)?`),c("XRANGE",`^${a[s.GTLT]}\\s*${a[s.XRANGEPLAIN]}$`),c("XRANGELOOSE",`^${a[s.GTLT]}\\s*${a[s.XRANGEPLAINLOOSE]}$`),c("COERCE",`(^|[^\\d])(\\d{1,${r}})(?:\\.(\\d{1,${r}}))?(?:\\.(\\d{1,${r}}))?(?:$|[^\\d])`),c("COERCERTL",a[s.COERCE],!0),c("LONETILDE","(?:~>?)"),c("TILDETRIM",`(\\s*)${a[s.LONETILDE]}\\s+`,!0),t.tildeTrimReplace="$1~",c("TILDE",`^${a[s.LONETILDE]}${a[s.XRANGEPLAIN]}$`),c("TILDELOOSE",`^${a[s.LONETILDE]}${a[s.XRANGEPLAINLOOSE]}$`),c("LONECARET","(?:\\^)"),c("CARETTRIM",`(\\s*)${a[s.LONECARET]}\\s+`,!0),t.caretTrimReplace="$1^",c("CARET",`^${a[s.LONECARET]}${a[s.XRANGEPLAIN]}$`),c("CARETLOOSE",`^${a[s.LONECARET]}${a[s.XRANGEPLAINLOOSE]}$`),c("COMPARATORLOOSE",`^${a[s.GTLT]}\\s*(${a[s.LOOSEPLAIN]})$|^$`),c("COMPARATOR",`^${a[s.GTLT]}\\s*(${a[s.FULLPLAIN]})$|^$`),c("COMPARATORTRIM",`(\\s*)${a[s.GTLT]}\\s*(${a[s.LOOSEPLAIN]}|${a[s.XRANGEPLAIN]})`,!0),t.comparatorTrimReplace="$1$2$3",c("HYPHENRANGE",`^\\s*(${a[s.XRANGEPLAIN]})\\s+-\\s+(${a[s.XRANGEPLAIN]})\\s*$`),c("HYPHENRANGELOOSE",`^\\s*(${a[s.XRANGEPLAINLOOSE]})\\s+-\\s+(${a[s.XRANGEPLAINLOOSE]})\\s*$`),c("STAR","(<|>)?=?\\s*\\*"),c("GTE0","^\\s*>=\\s*0.0.0\\s*$"),c("GTE0PRE","^\\s*>=\\s*0.0.0-0\\s*$")},98782:function(e,t,n){let r=n(16832),i=(e,t,n)=>r(e,t,">",n);e.exports=i},66199:function(e,t,n){let r=n(78916),i=(e,t,n)=>(e=new r(e,n),t=new r(t,n),e.intersects(t));e.exports=i},45517:function(e,t,n){let r=n(16832),i=(e,t,n)=>r(e,t,"<",n);e.exports=i},53342:function(e,t,n){let r=n(71823),i=n(78916),o=(e,t,n)=>{let o=null,a=null,s=null;try{s=new i(t,n)}catch(u){return null}return e.forEach(e=>{s.test(e)&&(!o||-1===a.compare(e))&&(o=e,a=new r(o,n))}),o};e.exports=o},8689:function(e,t,n){let r=n(71823),i=n(78916),o=(e,t,n)=>{let o=null,a=null,s=null;try{s=new i(t,n)}catch(u){return null}return e.forEach(e=>{s.test(e)&&(!o||1===a.compare(e))&&(o=e,a=new r(o,n))}),o};e.exports=o},51329:function(e,t,n){let r=n(71823),i=n(78916),o=n(47143),a=(e,t)=>{e=new i(e,t);let n=new r("0.0.0");if(e.test(n)||(n=new r("0.0.0-0"),e.test(n)))return n;n=null;for(let a=0;a{let t=new r(e.semver.version);switch(e.operator){case">":0===t.prerelease.length?t.patch++:t.prerelease.push(0),t.raw=t.format();case"":case">=":(!u||o(t,u))&&(u=t);break;case"<":case"<=":break;default:throw Error(`Unexpected operation: ${e.operator}`)}}),u&&(!n||o(n,u))&&(n=u)}return n&&e.test(n)?n:null};e.exports=a},16832:function(e,t,n){let r=n(71823),i=n(31911),{ANY:o}=i,a=n(78916),s=n(15174),u=n(47143),c=n(39964),l=n(70486),f=n(618),d=(e,t,n,d)=>{e=new r(e,d),t=new a(t,d);let p,h,m,v,g;switch(n){case">":p=u,h=l,m=c,v=">",g=">=";break;case"<":p=c,h=f,m=u,v="<",g="<=";break;default:throw TypeError('Must provide a hilo val of "<" or ">"')}if(s(e,t,d))return!1;for(let y=0;y{e.semver===o&&(e=new i(">=0.0.0")),E=E||e,w=w||e,p(e.semver,E.semver,d)?E=e:m(e.semver,w.semver,d)&&(w=e)}),E.operator===v||E.operator===g||(!w.operator||w.operator===v)&&h(e,w.semver)||w.operator===g&&m(e,w.semver))return!1}return!0};e.exports=d},31213:function(e,t,n){let r=n(15174),i=n(71787);e.exports=(e,t,n)=>{let o=[],a=null,s=null,u=e.sort((e,t)=>i(e,t,n));for(let c of u){let l=r(c,t,n);l?(s=c,a||(a=c)):(s&&o.push([a,s]),s=null,a=null)}a&&o.push([a,null]);let f=[];for(let[d,p]of o)d===p?f.push(d):p||d!==u[0]?p?d===u[0]?f.push(`<=${p}`):f.push(`${d} - ${p}`):f.push(`>=${d}`):f.push("*");let h=f.join(" || "),m="string"==typeof t.raw?t.raw:String(t);return h.length{if(e===t)return!0;e=new r(e,n),t=new r(t,n);let i=!1;OUTER:for(let o of e.set){for(let a of t.set){let s=c(o,a,n);if(i=i||null!==s,s)continue OUTER}if(i)return!1}return!0},c=(e,t,n)=>{if(e===t)return!0;if(1===e.length&&e[0].semver===o){if(1===t.length&&t[0].semver===o)return!0;e=n.includePrerelease?[new i(">=0.0.0-0")]:[new i(">=0.0.0")]}if(1===t.length&&t[0].semver===o){if(n.includePrerelease)return!0;t=[new i(">=0.0.0")]}let r=new Set,u,c;for(let d of e)">"===d.operator||">="===d.operator?u=l(u,d,n):"<"===d.operator||"<="===d.operator?c=f(c,d,n):r.add(d.semver);if(r.size>1)return null;let p;if(u&&c&&((p=s(u.semver,c.semver,n))>0||0===p&&(">="!==u.operator||"<="!==c.operator)))return null;for(let h of r){if(u&&!a(h,String(u),n)||c&&!a(h,String(c),n))return null;for(let m of t)if(!a(h,String(m),n))return!1;return!0}let v,g,y,b,E=!!c&&!n.includePrerelease&&!!c.semver.prerelease.length&&c.semver,w=!!u&&!n.includePrerelease&&!!u.semver.prerelease.length&&u.semver;for(let x of(E&&1===E.prerelease.length&&"<"===c.operator&&0===E.prerelease[0]&&(E=!1),t)){if(b=b||">"===x.operator||">="===x.operator,y=y||"<"===x.operator||"<="===x.operator,u){if(w&&x.semver.prerelease&&x.semver.prerelease.length&&x.semver.major===w.major&&x.semver.minor===w.minor&&x.semver.patch===w.patch&&(w=!1),">"===x.operator||">="===x.operator){if((v=l(u,x,n))===x&&v!==u)return!1}else if(">="===u.operator&&!a(u.semver,String(x),n))return!1}if(c){if(E&&x.semver.prerelease&&x.semver.prerelease.length&&x.semver.major===E.major&&x.semver.minor===E.minor&&x.semver.patch===E.patch&&(E=!1),"<"===x.operator||"<="===x.operator){if((g=f(c,x,n))===x&&g!==c)return!1}else if("<="===c.operator&&!a(c.semver,String(x),n))return!1}if(!x.operator&&(c||u)&&0!==p)return!1}return(!u||!y||!!c||0===p)&&(!c||!b||!!u||0===p)&&!w&&!E},l=(e,t,n)=>{if(!e)return t;let r=s(e.semver,t.semver,n);return r>0?e:r<0?t:">"===t.operator&&">="===e.operator?t:e},f=(e,t,n)=>{if(!e)return t;let r=s(e.semver,t.semver,n);return r<0?e:r>0?t:"<"===t.operator&&"<="===e.operator?t:e};e.exports=u},91911:function(e,t,n){let r=n(78916),i=(e,t)=>new r(e,t).set.map(e=>e.map(e=>e.value).join(" ").trim().split(" "));e.exports=i},20114:function(e,t,n){let r=n(78916),i=(e,t)=>{try{return new r(e,t).range||"*"}catch(n){return null}};e.exports=i},95642:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.DendronNote=t.useMermaid=void 0;let i=r(n(67294)),o=n(25674),a=({noteRenderedBody:e})=>{i.default.useEffect(()=>{let e=(0,o.createLogger)("useMermaid"),t=window._mermaid;e.info("mermaid created"),t&&(e.info("mermaid initialized"),t.init())},[e])};function s({noteContent:e,...n}){(0,t.useMermaid)({noteRenderedBody:e});let r=(0,o.createLogger)("DendronNote");return r.info({ctx:"DendronNote"}),i.default.createElement("div",{dangerouslySetInnerHTML:{__html:e},...n})}t.useMermaid=a,t.DendronNote=s},94796:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.DendronNote=void 0;var r=n(95642);Object.defineProperty(t,"DendronNote",{enumerable:!0,get:function(){return r.DendronNote}})},50077:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.FRONTEND_CONSTANTS=void 0,t.FRONTEND_CONSTANTS={DEFAULT_DATA_DIR:"data"}},21225:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.useConfig=t.useEngine=t.useEngineAppSelector=t.useEngineAppDispatch=void 0;let i=r(n(96486)),o=n(67294),a=n(14416),s=n(23048),u=n(60420),c=n(25357),l=()=>(0,a.useDispatch)();t.useEngineAppDispatch=l,t.useEngineAppSelector=a.useSelector;let f=({engineState:e,opts:n})=>{let r=(0,t.useEngineAppDispatch)(),a=(0,u.createLogger)("useEngine");(0,o.useEffect)(()=>{if(a.info({ctx:"useEffect",state:"enter"}),e.error)return e.error;if(!s.engineSliceUtils.hasInitialized(e)||n.force){if(a.info({msg:"dispatch notes",force:n.force}),i.default.isUndefined(n.url)||!n.ws)return;a.info({ctx:"useEffect",state:"initEngine"}),r((0,c.initNotes)({url:n.url,ws:n.ws}))}a.info({ctx:"useEffect",state:"exit",engineState:e})},[e.loading,n.url,n.ws])};t.useEngine=f;let d=({opts:e})=>{let n=(0,t.useEngineAppDispatch)(),r=(0,u.createLogger)("syncConfig");(0,o.useEffect)(()=>{r.info({ctx:"useEffect",state:"enter"}),!i.default.isUndefined(e.url)&&e.ws&&(r.info({ctx:"useEffect",state:"syncConfig"}),n((0,c.syncConfig)({url:e.url,ws:e.ws})),r.info({ctx:"useEffect",state:"exit"}))},[])};t.useConfig=d},23048:function(e,t,n){"use strict";var r=this&&this.__createBinding||(Object.create?function(e,t,n,r){void 0===r&&(r=n);var i=Object.getOwnPropertyDescriptor(t,n);(!i||("get"in i?!t.__esModule:i.writable||i.configurable))&&(i={enumerable:!0,get:function(){return t[n]}}),Object.defineProperty(e,r,i)}:function(e,t,n,r){void 0===r&&(r=n),e[r]=t[n]}),i=this&&this.__setModuleDefault||(Object.create?function(e,t){Object.defineProperty(e,"default",{enumerable:!0,value:t})}:function(e,t){e.default=t}),o=this&&this.__importStar||function(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)"default"!==n&&Object.prototype.hasOwnProperty.call(e,n)&&r(t,e,n);return i(t,e),t};Object.defineProperty(t,"__esModule",{value:!0}),t.engineSliceUtils=t.engineHooks=t.engineStore=t.engineSlice=void 0;let a=o(n(25357));t.engineSlice=a;var s=n(19348);Object.defineProperty(t,"engineStore",{enumerable:!0,get:function(){return s.store}}),t.engineHooks=o(n(21225)),t.engineSliceUtils=o(n(6762))},25357:function(e,t,n){"use strict";var r;Object.defineProperty(t,"__esModule",{value:!0}),t.reducer=t.tearDown=t.updateNote=t.setRenderNote=t.setConfig=t.setFromInit=t.setError=t.setNotes=t.engineSlice=t.renderNote=t.syncNote=t.syncConfig=t.initNotes=void 0;let i=n(25903),o=n(46987),a=n(77322),s=n(60420);t.initNotes=(0,o.createAsyncThunk)("engine/init",async({url:e,ws:n},{dispatch:r})=>{var o;let a=(0,s.createLogger)("initNotesThunk"),u=e,c=new i.DendronApiV2({endpoint:u,apiPath:"api",logger:a});a.info({state:"pre:workspaceSync"});let l=await c.workspaceSync({ws:n}),f=await c.schemaQuery({qs:"*"});if(a.info({state:"post:workspaceSync"}),l.error)return r((0,t.setError)((0,i.stringifyError)(l.error))),l;let d=l.data;a.info({state:"pre:setNotes"});let p={};return null===(o=f.data)||void 0===o||o.map(e=>{p[e.root.id]=e}),r((0,t.setFromInit)({...d,schemas:p})),r((0,t.setError)(void 0)),a.info({state:"post:setNotes"}),l}),t.syncConfig=(0,o.createAsyncThunk)("engine/syncConfig",async({url:e,ws:n},{dispatch:r})=>{let o=(0,s.createLogger)("syncConfigThunk"),a=e,u=new i.DendronApiV2({endpoint:a,apiPath:"api",logger:o});o.info({state:"pre:initConfig"});let c=await u.configGet({ws:n});if(o.info({state:"post:initConfig"}),c.error)return r((0,t.setError)((0,i.stringifyError)(c.error))),c;let l=c.data;return o.info({state:"pre:setConfig"}),r((0,t.setConfig)(l)),r((0,t.setError)(void 0)),o.info({state:"post:setConfig"}),c}),t.syncNote=(0,o.createAsyncThunk)("engine/sync",async({url:e,ws:n,note:r},{dispatch:o})=>{let a=(0,s.createLogger)("syncNoteThunk"),u=e,c=new i.DendronApiV2({endpoint:u,apiPath:"api",logger:a});a.info({state:"pre:query"});let l=await c.noteQuery({qs:r.fname,ws:n,vault:r.vault});if(a.info({state:"post:query"}),l.error)return o((0,t.setError)((0,i.stringifyError)(l.error))),l;let f=l.data;return a.debug({state:"pre:setNotes",notes:f.length<10?f.map(i.NoteUtils.toLogObj):null}),(null==f?void 0:f.length)&&(o((0,t.updateNote)(f[0])),o((0,t.setError)(void 0))),a.info({state:"post:setNotes"}),l}),t.renderNote=(0,o.createAsyncThunk)("engine/render",async({url:e,ws:n,id:r,note:o},{dispatch:a})=>{let u=e,c=(0,s.createLogger)("renderNoteThunk"),l=new i.DendronApiV2({endpoint:u,apiPath:"api",logger:c}),f=await l.noteRender({id:r,ws:n,note:o});if(f.error)return a((0,t.setError)((0,i.stringifyError)(f.error))),f;let d=f.data;return a((0,t.setRenderNote)({id:r,body:d})),a((0,t.setError)(void 0)),f});let u={loading:a.LoadingStatus.IDLE,currentRequestId:void 0,vaults:[],notes:{},noteFName:{},schemas:{},notesRendered:{},error:null};t.engineSlice=(0,o.createSlice)({name:"engine",initialState:u,reducers:{setFromInit(e,t){let{notes:n,wsRoot:r,schemas:o,vaults:a,config:s}=t.payload;e.notes=n,e.wsRoot=r,e.schemas=o,e.vaults=a,e.config=s,e.noteFName=i.NoteFnameDictUtils.createNotePropsByFnameDict(n)},setConfig(e,t){e.config=t.payload},setNotes(e,t){e.notes=t.payload},setError(e,t){e.error=t.payload},tearDown(e){e.loading=a.LoadingStatus.IDLE,e.currentRequestId=void 0,e.vaults=[],e.notes={},e.schemas={},e.notesRendered={},e.error=null,e.noteFName={}},setRenderNote(e,t){let{id:n,body:r}=t.payload;e.notesRendered[n]=r},updateNote(e,t){let n=t.payload;e.notes||(e.notes={});let r={notesById:e.notes,notesByFname:e.noteFName};if(!e.notes[n.id]){let o=i.NoteUtils.addOrUpdateParents({note:n,noteDicts:r,createStubs:!0});o.forEach(e=>i.NoteDictsUtils.add(e.note,r))}i.NoteDictsUtils.add(n,r)}},extraReducers(e){let n=(0,s.createLogger)("engineSlice");e.addCase(t.initNotes.pending,(e,{meta:t})=>{n.info({state:"start:initNotes",requestId:t.requestId}),"idle"===e.loading&&(e.loading=a.LoadingStatus.PENDING,e.currentRequestId=t.requestId)}),e.addCase(t.initNotes.fulfilled,(e,{meta:t})=>{let{requestId:r}=t;n.info({state:"fin:initNotes",requestId:e.currentRequestId}),"pending"===e.loading&&e.currentRequestId===r&&(e.loading=a.LoadingStatus.IDLE,e.currentRequestId=void 0)})}}),r=t.engineSlice.actions,t.setNotes=r.setNotes,t.setError=r.setError,t.setFromInit=r.setFromInit,t.setConfig=r.setConfig,t.setRenderNote=r.setRenderNote,t.updateNote=r.updateNote,t.tearDown=r.tearDown,t.reducer=t.engineSlice.reducer},19348:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.store=void 0;let r=n(46987),i=n(25357),o=(0,r.configureStore)({reducer:{engine:i.reducer}});t.store=o},6762:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.hasInitialized=void 0;let i=r(n(96486)),o=e=>"idle"===e.loading&&!i.default.isEmpty(e.notes)&&!i.default.isEmpty(e.vaults);t.hasInitialized=o},15805:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.useIDEAppSelector=t.useIDEAppDispatch=void 0;let r=n(14416),i=()=>(0,r.useDispatch)();t.useIDEAppDispatch=i,t.useIDEAppSelector=r.useSelector},76814:function(e,t,n){"use strict";var r=this&&this.__createBinding||(Object.create?function(e,t,n,r){void 0===r&&(r=n);var i=Object.getOwnPropertyDescriptor(t,n);(!i||("get"in i?!t.__esModule:i.writable||i.configurable))&&(i={enumerable:!0,get:function(){return t[n]}}),Object.defineProperty(e,r,i)}:function(e,t,n,r){void 0===r&&(r=n),e[r]=t[n]}),i=this&&this.__setModuleDefault||(Object.create?function(e,t){Object.defineProperty(e,"default",{enumerable:!0,value:t})}:function(e,t){e.default=t}),o=this&&this.__importStar||function(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)"default"!==n&&Object.prototype.hasOwnProperty.call(e,n)&&r(t,e,n);return i(t,e),t};Object.defineProperty(t,"__esModule",{value:!0}),t.ideHooks=t.ideStore=t.ideSlice=void 0;let a=o(n(73354));t.ideSlice=a;var s=n(22517);Object.defineProperty(t,"ideStore",{enumerable:!0,get:function(){return s.store}}),t.ideHooks=o(n(15805))},73354:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.reducer=t.actions=t.ideSlice=void 0;let r=n(25903),i=n(46987),o={noteActive:void 0,notePrev:void 0,graphStyles:"",theme:"unknown",views:{},seedsInWorkspace:void 0,lookupModifiers:void 0,tree:void 0,graphTheme:r.GraphThemeEnum.Classic,graphDepth:1,showBacklinks:!0,showOutwardLinks:!0,showHierarchy:!0,isLocked:!1,previewHTML:""};t.ideSlice=(0,i.createSlice)({name:"ide",initialState:o,reducers:{setPreviewHTML(e,t){e.previewHTML=t.payload},setNoteActive(e,t){e.notePrev=e.noteActive,e.noteActive=t.payload},setTree(e,t){e.tree=t.payload},setTheme(e,t){e.theme=t.payload},setGraphStyles(e,t){e.graphStyles=t.payload},setViewReady(e,t){let{key:n,ready:r}=t.payload;e.views[n]={ready:r}},refreshLookup(e,t){e.lookupModifiers=t.payload},setSeedsInWorkspace(e,t){e.seedsInWorkspace=t.payload},setGraphTheme(e,t){e.graphTheme=t.payload},setGraphDepth(e,t){e.graphDepth=t.payload},setShowBacklinks(e,t){e.showBacklinks=t.payload},setShowOutwardLinks(e,t){e.showOutwardLinks=t.payload},setShowHierarchy(e,t){e.showHierarchy=t.payload},setLock(e,t){e.isLocked=t.payload}}}),t.actions=t.ideSlice.actions,t.reducer=t.ideSlice.reducer},22517:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.store=void 0;let r=n(46987),i=n(73354),o=(0,r.configureStore)({reducer:{ide:i.reducer}});t.store=o},49414:function(e,t,n){"use strict";var r=this&&this.__createBinding||(Object.create?function(e,t,n,r){void 0===r&&(r=n);var i=Object.getOwnPropertyDescriptor(t,n);(!i||("get"in i?!t.__esModule:i.writable||i.configurable))&&(i={enumerable:!0,get:function(){return t[n]}}),Object.defineProperty(e,r,i)}:function(e,t,n,r){void 0===r&&(r=n),e[r]=t[n]}),i=this&&this.__exportStar||function(e,t){for(var n in e)"default"===n||Object.prototype.hasOwnProperty.call(t,n)||r(t,e,n)};Object.defineProperty(t,"__esModule",{value:!0}),t.combinedStore=void 0;let o=n(25903),a=n(25357),s=n(46987),u=n(73354);i(n(23048),t),i(n(76814),t);let c=[...(0,s.getDefaultMiddleware)()];if("dev"===(0,o.getStage)()){let{createLogger:l}=n(94500),f=l({collapsed:!0});c.push(f)}let d=a.engineSlice.reducer,p=u.ideSlice.reducer,h=(0,s.configureStore)({reducer:{engine:d,ide:p},middleware:c});t.combinedStore=h},4604:function(e,t,n){"use strict";var r=this&&this.__createBinding||(Object.create?function(e,t,n,r){void 0===r&&(r=n);var i=Object.getOwnPropertyDescriptor(t,n);(!i||("get"in i?!t.__esModule:i.writable||i.configurable))&&(i={enumerable:!0,get:function(){return t[n]}}),Object.defineProperty(e,r,i)}:function(e,t,n,r){void 0===r&&(r=n),e[r]=t[n]}),i=this&&this.__exportStar||function(e,t){for(var n in e)"default"===n||Object.prototype.hasOwnProperty.call(t,n)||r(t,e,n)};Object.defineProperty(t,"__esModule",{value:!0}),i(n(49414),t),i(n(60420),t),i(n(94796),t),i(n(50077),t),i(n(14416),t),i(n(3262),t),i(n(77322),t),i(n(46987),t)},3262:function(e,t,n){"use strict";var r=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.ThemeUtils=void 0;let i=r(n(96486)),o={light:{primaryColor:"#43B02A",bodyBackground:"#ffffff",componentBackground:"#ffffff",layoutBodyBackground:"#ffffff",borderRadiusBase:"4px",layoutHeaderBackground:"#F5F7F9"}};class a{static getTheme(e){return i.default.get(o,e,void 0)}}t.ThemeUtils=a},77322:function(e,t,n){"use strict";var r,i,o=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.verifyEngineSliceState=t.LoadingStatus=void 0;let a=o(n(96486));function s(e){let t=["notes","config"];return a.default.every(t,t=>!a.default.isUndefined(e[t]))}(r=i=t.LoadingStatus||(t.LoadingStatus={})).IDLE="idle",r.PENDING="pending",r.FULFILLED="fulfilled",t.verifyEngineSliceState=s},99666:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.usePreviousValue=void 0;let r=n(67294);function i(e){let t=(0,r.useRef)();return(0,r.useEffect)(()=>{t.current=e}),t.current}t.usePreviousValue=i},60420:function(e,t,n){"use strict";var r=this&&this.__createBinding||(Object.create?function(e,t,n,r){void 0===r&&(r=n);var i=Object.getOwnPropertyDescriptor(t,n);(!i||("get"in i?!t.__esModule:i.writable||i.configurable))&&(i={enumerable:!0,get:function(){return t[n]}}),Object.defineProperty(e,r,i)}:function(e,t,n,r){void 0===r&&(r=n),e[r]=t[n]}),i=this&&this.__exportStar||function(e,t){for(var n in e)"default"===n||Object.prototype.hasOwnProperty.call(t,n)||r(t,e,n)},o=this&&this.__importDefault||function(e){return e&&e.__esModule?e:{default:e}};Object.defineProperty(t,"__esModule",{value:!0}),t.querystring=void 0;let a=o(n(17673));t.querystring=a.default,i(n(25674),t),i(n(14761),t),i(n(99666),t)},25674:function(e,t,n){"use strict";var r,i,o=this&&this.__createBinding||(Object.create?function(e,t,n,r){void 0===r&&(r=n);var i=Object.getOwnPropertyDescriptor(t,n);(!i||("get"in i?!t.__esModule:i.writable||i.configurable))&&(i={enumerable:!0,get:function(){return t[n]}}),Object.defineProperty(e,r,i)}:function(e,t,n,r){void 0===r&&(r=n),e[r]=t[n]}),a=this&&this.__setModuleDefault||(Object.create?function(e,t){Object.defineProperty(e,"default",{enumerable:!0,value:t})}:function(e,t){e.default=t}),s=this&&this.__importStar||function(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)"default"!==n&&Object.prototype.hasOwnProperty.call(e,n)&&o(t,e,n);return a(t,e),t};Object.defineProperty(t,"__esModule",{value:!0}),t.setLogLevel=t.createLogger=t.LOG_LEVEL=void 0;let u=s(n(97225));function c(e){return new u.Logger(e)}function l(e){u.default.Logger.LOG_LEVEL=e}(r=i=t.LOG_LEVEL||(t.LOG_LEVEL={})).DEBUG="DEBUG",r.INFO="INFO",r.ERROR="ERROR",t.createLogger=c,t.setLogLevel=l},14761:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.postVSCodeMessage=t.useVSCodeMessage=void 0;let r=n(25903),i=n(67294),o=e=>{let n=t=>{let n=t.data||{};"vscode"===n.source&&e(n)};(0,i.useEffect)(()=>{if(window.addEventListener("message",n),window.parent!==window){let e=e=>{console.log("sending key event"),window.parent.postMessage(JSON.stringify({altKey:e.altKey,code:e.code,ctrlKey:e.ctrlKey,isComposing:e.isComposing,key:e.key,location:e.location,metaKey:e.metaKey,repeat:e.repeat,shiftKey:e.shiftKey}),"*")};window.hasOwnProperty("keyhookInstalled")||(window.keyhookInstalled=!0,window.addEventListener("keydown",e))}return(0,t.postVSCodeMessage)({type:r.DMessageEnum.MESSAGE_DISPATCHER_READY,data:{},source:r.DMessageSource.webClient}),()=>{window.removeEventListener("message",n),delete window.keyhookInstalled}},[])};t.useVSCodeMessage=o;let a=e=>{window&&window.parent.postMessage(e,"*")};t.postVSCodeMessage=a},46987:function(e,t,n){"use strict";function r(e){for(var t=arguments.length,n=Array(t>1?t-1:0),r=1;r3?t.i-4:t.i:Array.isArray(e)?1:p(e)?2:h(e)?3:0}function c(e,t){return 2===u(e)?e.has(t):Object.prototype.hasOwnProperty.call(e,t)}function l(e,t){return 2===u(e)?e.get(t):e[t]}function f(e,t,n){var r=u(e);2===r?e.set(t,n):3===r?(e.delete(t),e.add(n)):e[t]=n}function d(e,t){return e===t?0!==e||1/e==1/t:e!=e&&t!=t}function p(e){return z&&e instanceof Map}function h(e){return H&&e instanceof Set}function m(e){return e.o||e.t}function v(e){if(Array.isArray(e))return Array.prototype.slice.call(e);var t=X(e);delete t[q];for(var n=Y(t),r=0;r1&&(e.set=e.add=e.clear=e.delete=y),Object.freeze(e),t&&s(e,function(e,t){return g(t,!0)},!0)),e}function y(){r(2)}function b(e){return null==e||"object"!=typeof e||Object.isFrozen(e)}function E(e){var t=J[e];return t||r(18,e),t}function w(e,t){J[e]||(J[e]=t)}function x(){return Z}function _(e,t){t&&(E("Patches"),e.u=[],e.s=[],e.v=t)}function S(e){C(e),e.p.forEach(D),e.p=null}function C(e){e===Z&&(Z=e.l)}function A(e){return Z={p:[],l:Z,h:e,m:!0,_:0}}function D(e){var t=e[q];0===t.i||1===t.i?t.j():t.O=!0}function O(e,t){t._=t.p.length;var n=t.p[0],i=void 0!==e&&e!==n;return t.h.g||E("ES5").S(t,e,i),i?(n[q].P&&(S(t),r(4)),o(e)&&(e=k(t,e),t.l||N(t,e)),t.u&&E("Patches").M(n[q].t,e,t.u,t.s)):e=k(t,n,[]),S(t),t.u&&t.v(t.u,t.s),e!==$?e:void 0}function k(e,t,n){if(b(t))return t;var r=t[q];if(!r)return s(t,function(i,o){return T(e,r,t,i,o,n)},!0),t;if(r.A!==e)return t;if(!r.P)return N(e,r.t,!0),r.t;if(!r.I){r.I=!0,r.A._--;var i=4===r.i||5===r.i?r.o=v(r.k):r.o;s(3===r.i?new Set(i):i,function(t,o){return T(e,r,i,t,o,n)}),N(e,i,!1),n&&e.u&&E("Patches").R(r,n,e.u,e.s)}return r.o}function T(e,t,n,r,a,s){if(i(a)){var u=k(e,a,s&&t&&3!==t.i&&!c(t.D,r)?s.concat(r):void 0);if(f(n,r,u),!i(u))return;e.m=!1}if(o(a)&&!b(a)){if(!e.h.F&&e._<1)return;k(e,a),t&&t.A.l||N(e,a)}}function N(e,t,n){void 0===n&&(n=!1),e.h.F&&e.m&&g(t,n)}function P(e,t){var n=e[q];return(n?m(n):e)[t]}function I(e,t){if(t in e)for(var n=Object.getPrototypeOf(e);n;){var r=Object.getOwnPropertyDescriptor(n,t);if(r)return r;n=Object.getPrototypeOf(n)}}function M(e){e.P||(e.P=!0,e.l&&M(e.l))}function F(e){e.o||(e.o=v(e.t))}function R(e,t,n){var r,i,o,a,s,u,c,l,f,d=p(t)?E("MapSet").N(t,n):h(t)?E("MapSet").T(t,n):e.g?(r=t,i=n,s=a={i:(o=Array.isArray(r))?1:0,A:i?i.A:x(),P:!1,I:!1,D:{},l:i,t:r,k:null,o:null,j:null,C:!1},u=Q,o&&(s=[a],u=ee),l=(c=Proxy.revocable(s,u)).revoke,f=c.proxy,a.k=f,a.j=l,f):E("ES5").J(t,n);return(n?n.A:x()).p.push(d),d}function L(e){return i(e)||r(22,e),function e(t){if(!o(t))return t;var n,r=t[q],i=u(t);if(r){if(!r.P&&(r.i<4||!E("ES5").K(r)))return r.t;r.I=!0,n=j(t,i),r.I=!1}else n=j(t,i);return s(n,function(t,i){r&&l(r.t,t)===i||f(n,t,e(i))}),3===i?new Set(n):n}(e)}function j(e,t){switch(t){case 2:return new Map(e);case 3:return Array.from(e)}return v(e)}function B(){function e(e,t){var n=o[e];return n?n.enumerable=t:o[e]=n={configurable:!0,enumerable:t,get:function(){var t=this[q];return Q.get(t,e)},set:function(t){var n=this[q];Q.set(n,e,t)}},n}function t(e){for(var t=e.length-1;t>=0;t--){var i=e[t][q];if(!i.P)switch(i.i){case 5:r(i)&&M(i);break;case 4:n(i)&&M(i)}}}function n(e){for(var t=e.t,n=e.k,r=Y(n),i=r.length-1;i>=0;i--){var o=r[i];if(o!==q){var a=t[o];if(void 0===a&&!c(t,o))return!0;var s=n[o],u=s&&s[q];if(u?u.t!==a:!d(s,a))return!0}}var l=!!t[q];return r.length!==Y(t).length+(l?0:1)}function r(e){var t=e.k;if(t.length!==e.t.length)return!0;var n=Object.getOwnPropertyDescriptor(t,t.length-1);if(n&&!n.get)return!0;for(var r=0;r1?r-1:0),o=1;o1?r-1:0),o=1;o=0;n--){var n,r=t[n];if(0===r.path.length&&"replace"===r.op){e=r.value;break}}n>-1&&(t=t.slice(n+1));var o=E("Patches").$;return i(e)?o(e,t):this.produce(e,function(e){return o(e,t)})},e}()),en=et.produce;et.produceWithPatches.bind(et),et.setAutoFreeze.bind(et),et.setUseProxies.bind(et),et.applyPatches.bind(et),et.createDraft.bind(et),et.finishDraft.bind(et);var er=en,ei=n(1413);function eo(e){return"Minified Redux error #"+e+"; visit https://redux.js.org/Errors?code="+e+" for the full message or use the non-minified dev environment for full errors. "}var ea="function"==typeof Symbol&&Symbol.observable||"@@observable",es=function(){return Math.random().toString(36).substring(7).split("").join(".")},eu={INIT:"@@redux/INIT"+es(),REPLACE:"@@redux/REPLACE"+es(),PROBE_UNKNOWN_ACTION:function(){return"@@redux/PROBE_UNKNOWN_ACTION"+es()}};function ec(e){if("object"!=typeof e||null===e)return!1;for(var t=e;null!==Object.getPrototypeOf(t);)t=Object.getPrototypeOf(t);return Object.getPrototypeOf(e)===t}function el(e,t,n){if("function"==typeof t&&"function"==typeof n||"function"==typeof n&&"function"==typeof arguments[3])throw Error(eo(0));if("function"==typeof t&&void 0===n&&(n=t,t=void 0),void 0!==n){if("function"!=typeof n)throw Error(eo(1));return n(el)(e,t)}if("function"!=typeof e)throw Error(eo(2));var r,i=e,o=t,a=[],s=a,u=!1;function c(){s===a&&(s=a.slice())}function l(){if(u)throw Error(eo(3));return o}function f(e){if("function"!=typeof e)throw Error(eo(4));if(u)throw Error(eo(5));var t=!0;return c(),s.push(e),function(){if(t){if(u)throw Error(eo(6));t=!1,c();var n=s.indexOf(e);s.splice(n,1),a=null}}}function d(e){if(!ec(e))throw Error(eo(7));if(void 0===e.type)throw Error(eo(8));if(u)throw Error(eo(9));try{u=!0,o=i(o,e)}finally{u=!1}for(var t=a=s,n=0;n-1){var i=n[r];return r>0&&(n.splice(r,1),n.unshift(i)),i.value}return eg}function i(t,i){r(t)===eg&&(n.unshift({key:t,value:i}),n.length>e&&n.pop())}function o(){return n}function a(){n=[]}return{get:r,put:i,getEntries:o,clear:a}}var eE=function(e,t){return e===t};function ew(e){return function(t,n){if(null===t||null===n||t.length!==n.length)return!1;for(var r=t.length,i=0;i1?t-1:0),r=1;r0&&i[i.length-1])&&(6===o[0]||2===o[0])){a=0;continue}if(3===o[0]&&(!i||o[1]>i[0]&&o[1]",value:e};if("object"!=typeof e||null===e)return!1;for(var o,a=null!=r?r(e):Object.entries(e),s=i.length>0,u=0,c=a;u=0)){if(!n(d))return{keyPath:p,value:d};if("object"==typeof d&&(o=eX(d,p,n,r,i)))return o}}return!1}function eJ(e){return void 0===e&&(e={}),function(){return function(e){return function(t){return e(t)}}}}function eQ(e){return"boolean"==typeof e}function e0(){return function(e){return e1(e)}}function e1(e){void 0===e&&(e={});var t=e.thunk,n=void 0===t||t;e.immutableCheck,e.serializableCheck;var r=new e$;return n&&(eQ(n)?r.push(ek):r.push(ek.withExtraArgument(n.extraArgument))),r}var e2=!0;function e4(e){var t,n=e0(),r=e||{},i=r.reducer,o=void 0===i?void 0:i,a=r.middleware,s=void 0===a?n():a,u=r.devTools,c=void 0===u||u,l=r.preloadedState,f=void 0===l?void 0:l,d=r.enhancers,p=void 0===d?void 0:d;if("function"==typeof o)t=o;else if(eW(o))t=ed(o);else throw Error('"reducer" is a required argument, and must be a function or an object of functions that can be passed to combineReducers');var h=s;if("function"==typeof h&&(h=h(n),!e2&&!Array.isArray(h)))throw Error("when using a middleware builder function, an array of middleware must be returned");if(!e2&&h.some(function(e){return"function"!=typeof e}))throw Error("each middleware provided to configureStore must be a function");var m=ev.apply(void 0,h),v=em;c&&(v=eH(eU({trace:!e2},"object"==typeof c&&c)));var g=[m];Array.isArray(p)?g=eP([m],p):"function"==typeof p&&(g=p(g));var y=v.apply(void 0,g);return el(t,f,y)}function e6(e,t){function n(){for(var n=[],r=0;r-1}function e5(e){return""+e}function e9(e){var t,n={},r=[],i={addCase:function(e,t){var r="string"==typeof e?e:e.type;if(r in n)throw Error("addCase cannot be called with two reducers for the same action type");return n[r]=t,i},addMatcher:function(e,t){return r.push({matcher:e,reducer:t}),i},addDefaultCase:function(e){return t=e,i}};return e(i),[n,r,t]}function e7(e){return"function"==typeof e}function te(e,t,n,r){void 0===n&&(n=[]);var a,s="function"==typeof t?e9(t):[t,n,r],u=s[0],c=s[1],l=s[2];if(e7(e))a=function(){return eG(e())};else{var f=eG(e);a=function(){return f}}function d(e,t){void 0===e&&(e=a());var n=eP([u[t.type]],c.filter(function(e){return(0,e.matcher)(t)}).map(function(e){return e.reducer}));return 0===n.filter(function(e){return!!e}).length&&(n=[l]),n.reduce(function(e,n){if(n){if(i(e)){var r=e,a=n(r,t);return void 0===a?e:a}if(o(e))return er(e,function(e){return n(e,t)});var a=n(e,t);if(void 0===a){if(null===e)return e;throw Error("A case reducer on a non-draftable value must not return undefined")}return a}return e},e)}return d.getInitialState=a,d}function tt(e,t){return e+"/"+t}function tn(e){var t,n=e.name;if(!n)throw Error("`name` is a required option for createSlice");var r="function"==typeof e.initialState?e.initialState:eG(e.initialState),i=e.reducers||{},o=Object.keys(i),a={},s={},u={};function c(){var t="function"==typeof e.extraReducers?e9(e.extraReducers):[e.extraReducers],n=t[0],i=void 0===n?{}:n,o=t[1],a=void 0===o?[]:o,u=t[2],c=void 0===u?void 0:u,l=eU(eU({},i),s);return te(r,l,a,c)}return o.forEach(function(e){var t,r,o=i[e],c=tt(n,e);"reducer"in o?(t=o.reducer,r=o.prepare):t=o,a[e]=t,s[c]=t,u[e]=r?e6(c,r):e6(c)}),{name:n,reducer:function(e,n){return t||(t=c()),t(e,n)},actions:u,caseReducers:a,getInitialState:function(){return t||(t=c()),t.getInitialState()}}}function tr(){return{ids:[],entities:{}}}function ti(){function e(e){return void 0===e&&(e={}),Object.assign(tr(),e)}return{getInitialState:e}}function to(){function e(e){var t=function(e){return e.ids},n=function(e){return e.entities},r=ez(t,n,function(e,t){return e.map(function(e){return t[e]})}),i=function(e,t){return t},o=function(e,t){return e[t]},a=ez(t,function(e){return e.length});if(!e)return{selectIds:t,selectEntities:n,selectAll:r,selectTotal:a,selectById:ez(n,i,o)};var s=ez(e,n);return{selectIds:ez(e,t),selectEntities:s,selectAll:ez(e,r),selectTotal:ez(e,a),selectById:ez(s,i,o)}}return{getSelectors:e}}function ta(e){var t=ts(function(t,n){return e(n)});return function(e){return t(e,void 0)}}function ts(e){return function(t,n){function r(e){return e3(e)}var o=function(t){r(n)?e(n.payload,t):e(n,t)};return i(t)?(o(t),t):er(t,o)}}function tu(e,t){var n;return t(e)}function tc(e){return Array.isArray(e)||(e=Object.values(e)),e}function tl(e,t,n){e=tc(e);for(var r=[],i=[],o=0,a=e;o0&&e.filter(function(e){return c(n,e,t)}).length>0&&(t.ids=t.ids.map(function(e){return n[e]||e}))}function d(e,t){return p([e],t)}function p(t,r){var i=tl(t,e,r),o=i[0];f(i[1],r),n(o,r)}return{removeAll:ta(u),addOne:ts(t),addMany:ts(n),setOne:ts(r),setMany:ts(i),setAll:ts(o),updateOne:ts(l),updateMany:ts(f),upsertOne:ts(d),upsertMany:ts(p),removeOne:ts(a),removeMany:ts(s)}}function td(e,t){var n=tf(e),r=n.removeOne,i=n.removeMany,o=n.removeAll;function a(e,t){return s([e],t)}function s(t,n){var r=(t=tc(t)).filter(function(t){return!(tu(t,e) in n.entities)});0!==r.length&&v(r,n)}function u(e,t){return c([e],t)}function c(e,t){0!==(e=tc(e)).length&&v(e,t)}function l(e,t){e=tc(e),t.entities={},t.ids=[],s(e,t)}function f(e,t){return d([e],t)}function d(t,n){for(var r=!1,i=0,o=t;i-1;return n&&r}function tO(e){return"function"==typeof e[0]&&"pending"in e[0]&&"fulfilled"in e[0]&&"rejected"in e[0]}function tk(){for(var e=[],t=0;t0)for(var d=e.getState(),p=Array.from(n.values()),h=0,m=p;ht.indexOf(r)&&(n[r]=e[r]);if(null!=e&&"function"==typeof Object.getOwnPropertySymbols)for(var i=0,r=Object.getOwnPropertySymbols(e);it.indexOf(r[i])&&Object.prototype.propertyIsEnumerable.call(e,r[i])&&(n[r[i]]=e[r[i]]);return n};function d(e){return"number"==typeof e?"".concat(e," ").concat(e," auto"):/^\d+(\.\d+)?(px|em|rem|%)$/.test(e)?"0 0 ".concat(e):e}var p=["xs","sm","md","lg","xl","xxl"],h=a.forwardRef(function(e,t){var n,s=a.useContext(l.E_),h=s.getPrefixCls,m=s.direction,v=a.useContext(c.Z),g=v.gutter,y=v.wrap,b=v.supportFlexGap,E=e.prefixCls,w=e.span,x=e.order,_=e.offset,S=e.push,C=e.pull,A=e.className,D=e.children,O=e.flex,k=e.style,T=f(e,["prefixCls","span","order","offset","push","pull","className","children","flex","style"]),N=h("col",E),P={};p.forEach(function(t){var n,a={},s=e[t];"number"==typeof s?a.span=s:"object"===(0,o.Z)(s)&&(a=s||{}),delete T[t],P=(0,i.Z)((0,i.Z)({},P),(n={},(0,r.Z)(n,"".concat(N,"-").concat(t,"-").concat(a.span),void 0!==a.span),(0,r.Z)(n,"".concat(N,"-").concat(t,"-order-").concat(a.order),a.order||0===a.order),(0,r.Z)(n,"".concat(N,"-").concat(t,"-offset-").concat(a.offset),a.offset||0===a.offset),(0,r.Z)(n,"".concat(N,"-").concat(t,"-push-").concat(a.push),a.push||0===a.push),(0,r.Z)(n,"".concat(N,"-").concat(t,"-pull-").concat(a.pull),a.pull||0===a.pull),(0,r.Z)(n,"".concat(N,"-rtl"),"rtl"===m),n))});var I=u()(N,(n={},(0,r.Z)(n,"".concat(N,"-").concat(w),void 0!==w),(0,r.Z)(n,"".concat(N,"-order-").concat(x),x),(0,r.Z)(n,"".concat(N,"-offset-").concat(_),_),(0,r.Z)(n,"".concat(N,"-push-").concat(S),S),(0,r.Z)(n,"".concat(N,"-pull-").concat(C),C),n),A,P),M={};if(g&&g[0]>0){var F=g[0]/2;M.paddingLeft=F,M.paddingRight=F}if(g&&g[1]>0&&!b){var R=g[1]/2;M.paddingTop=R,M.paddingBottom=R}return O&&(M.flex=d(O),!1!==y||M.minWidth||(M.minWidth=0)),a.createElement("div",(0,i.Z)({},T,{style:(0,i.Z)((0,i.Z)({},M),k),className:I,ref:t}),D)});h.displayName="Col";var m=h},61975:function(e,t,n){"use strict";n.d(t,{C:function(){return b},E_:function(){return y}});var r=n(67294),i=n(87462),o=n(4942),a=n(94184),s=n.n(a),u=n(91577),c=function(){var e=(0,r.useContext(y).getPrefixCls)("empty-img-default");return r.createElement("svg",{className:e,width:"184",height:"152",viewBox:"0 0 184 152",xmlns:"http://www.w3.org/2000/svg"},r.createElement("g",{fill:"none",fillRule:"evenodd"},r.createElement("g",{transform:"translate(24 31.67)"},r.createElement("ellipse",{className:"".concat(e,"-ellipse"),cx:"67.797",cy:"106.89",rx:"67.797",ry:"12.668"}),r.createElement("path",{className:"".concat(e,"-path-1"),d:"M122.034 69.674L98.109 40.229c-1.148-1.386-2.826-2.225-4.593-2.225h-51.44c-1.766 0-3.444.839-4.592 2.225L13.56 69.674v15.383h108.475V69.674z"}),r.createElement("path",{className:"".concat(e,"-path-2"),d:"M101.537 86.214L80.63 61.102c-1.001-1.207-2.507-1.867-4.048-1.867H31.724c-1.54 0-3.047.66-4.048 1.867L6.769 86.214v13.792h94.768V86.214z",transform:"translate(13.56)"}),r.createElement("path",{className:"".concat(e,"-path-3"),d:"M33.83 0h67.933a4 4 0 0 1 4 4v93.344a4 4 0 0 1-4 4H33.83a4 4 0 0 1-4-4V4a4 4 0 0 1 4-4z"}),r.createElement("path",{className:"".concat(e,"-path-4"),d:"M42.678 9.953h50.237a2 2 0 0 1 2 2V36.91a2 2 0 0 1-2 2H42.678a2 2 0 0 1-2-2V11.953a2 2 0 0 1 2-2zM42.94 49.767h49.713a2.262 2.262 0 1 1 0 4.524H42.94a2.262 2.262 0 0 1 0-4.524zM42.94 61.53h49.713a2.262 2.262 0 1 1 0 4.525H42.94a2.262 2.262 0 0 1 0-4.525zM121.813 105.032c-.775 3.071-3.497 5.36-6.735 5.36H20.515c-3.238 0-5.96-2.29-6.734-5.36a7.309 7.309 0 0 1-.222-1.79V69.675h26.318c2.907 0 5.25 2.448 5.25 5.42v.04c0 2.971 2.37 5.37 5.277 5.37h34.785c2.907 0 5.277-2.421 5.277-5.393V75.1c0-2.972 2.343-5.426 5.25-5.426h26.318v33.569c0 .617-.077 1.216-.221 1.789z"})),r.createElement("path",{className:"".concat(e,"-path-5"),d:"M149.121 33.292l-6.83 2.65a1 1 0 0 1-1.317-1.23l1.937-6.207c-2.589-2.944-4.109-6.534-4.109-10.408C138.802 8.102 148.92 0 161.402 0 173.881 0 184 8.102 184 18.097c0 9.995-10.118 18.097-22.599 18.097-4.528 0-8.744-1.066-12.28-2.902z"}),r.createElement("g",{className:"".concat(e,"-g"),transform:"translate(149.65 15.383)"},r.createElement("ellipse",{cx:"20.654",cy:"3.167",rx:"2.849",ry:"2.815"}),r.createElement("path",{d:"M5.698 5.63H0L2.898.704zM9.259.704h4.985V5.63H9.259z"}))))},l=function(){var e=(0,r.useContext(y).getPrefixCls)("empty-img-simple");return r.createElement("svg",{className:e,width:"64",height:"41",viewBox:"0 0 64 41",xmlns:"http://www.w3.org/2000/svg"},r.createElement("g",{transform:"translate(0 1)",fill:"none",fillRule:"evenodd"},r.createElement("ellipse",{className:"".concat(e,"-ellipse"),cx:"32",cy:"33",rx:"32",ry:"7"}),r.createElement("g",{className:"".concat(e,"-g"),fillRule:"nonzero"},r.createElement("path",{d:"M55 12.76L44.854 1.258C44.367.474 43.656 0 42.907 0H21.093c-.749 0-1.46.474-1.947 1.257L9 12.761V22h46v-9.24z"}),r.createElement("path",{d:"M41.613 15.931c0-1.605.994-2.93 2.227-2.931H55v18.137C55 33.26 53.68 35 52.05 35h-40.1C10.32 35 9 33.259 9 31.137V13h11.16c1.233 0 2.227 1.323 2.227 2.928v.022c0 1.605 1.005 2.901 2.237 2.901h14.752c1.232 0 2.237-1.308 2.237-2.913v-.007z",className:"".concat(e,"-path")}))))},f=function(e,t){var n={};for(var r in e)Object.prototype.hasOwnProperty.call(e,r)&&0>t.indexOf(r)&&(n[r]=e[r]);if(null!=e&&"function"==typeof Object.getOwnPropertySymbols)for(var i=0,r=Object.getOwnPropertySymbols(e);it.indexOf(r[i])&&Object.prototype.propertyIsEnumerable.call(e,r[i])&&(n[r[i]]=e[r[i]]);return n},d=r.createElement(c,null),p=r.createElement(l,null),h=function(e){var t=e.className,n=e.prefixCls,a=e.image,c=void 0===a?d:a,l=e.description,h=e.children,m=e.imageStyle,v=f(e,["className","prefixCls","image","description","children","imageStyle"]),g=r.useContext(y),b=g.getPrefixCls,E=g.direction;return r.createElement(u.Z,{componentName:"Empty"},function(e){var a,u=b("empty",n),f=void 0!==l?l:e.description,d="string"==typeof f?f:"empty",g=null;return g="string"==typeof c?r.createElement("img",{alt:d,src:c}):c,r.createElement("div",(0,i.Z)({className:s()(u,(a={},(0,o.Z)(a,"".concat(u,"-normal"),c===p),(0,o.Z)(a,"".concat(u,"-rtl"),"rtl"===E),a),t)},v),r.createElement("div",{className:"".concat(u,"-image"),style:m},g),f&&r.createElement("div",{className:"".concat(u,"-description")},f),h&&r.createElement("div",{className:"".concat(u,"-footer")},h))})};h.PRESENTED_IMAGE_DEFAULT=d,h.PRESENTED_IMAGE_SIMPLE=p;var m=h,v=function(e){return r.createElement(b,null,function(t){var n=(0,t.getPrefixCls)("empty");switch(e){case"Table":case"List":return r.createElement(m,{image:m.PRESENTED_IMAGE_SIMPLE});case"Select":case"TreeSelect":case"Cascader":case"Transfer":case"Mentions":return r.createElement(m,{image:m.PRESENTED_IMAGE_SIMPLE,className:"".concat(n,"-small")});default:return r.createElement(m,null)}})},g=function(e,t){return t||(e?"ant-".concat(e):"ant")},y=r.createContext({getPrefixCls:g,renderEmpty:v}),b=y.Consumer},99134:function(e,t,n){"use strict";var r=(0,n(67294).createContext)({});t.Z=r},25908:function(e,t,n){"use strict";n.d(t,{D:function(){return C},Z:function(){return O}});var r=n(4942),i=n(87462),o=n(97685),a=n(67294),s=n(94184),u=n.n(s),c=n(98423),l=n(1413),f={icon:{tag:"svg",attrs:{viewBox:"0 0 1024 1024",focusable:"false"},children:[{tag:"path",attrs:{d:"M912 192H328c-4.4 0-8 3.6-8 8v56c0 4.4 3.6 8 8 8h584c4.4 0 8-3.6 8-8v-56c0-4.4-3.6-8-8-8zm0 284H328c-4.4 0-8 3.6-8 8v56c0 4.4 3.6 8 8 8h584c4.4 0 8-3.6 8-8v-56c0-4.4-3.6-8-8-8zm0 284H328c-4.4 0-8 3.6-8 8v56c0 4.4 3.6 8 8 8h584c4.4 0 8-3.6 8-8v-56c0-4.4-3.6-8-8-8zM104 228a56 56 0 10112 0 56 56 0 10-112 0zm0 284a56 56 0 10112 0 56 56 0 10-112 0zm0 284a56 56 0 10112 0 56 56 0 10-112 0z"}}]},name:"bars",theme:"outlined"},d=n(98615),p=function(e,t){return a.createElement(d.Z,(0,l.Z)((0,l.Z)({},e),{},{ref:t,icon:f}))};p.displayName="BarsOutlined";var h=a.forwardRef(p),m=n(18073),v={icon:{tag:"svg",attrs:{viewBox:"64 64 896 896",focusable:"false"},children:[{tag:"path",attrs:{d:"M724 218.3V141c0-6.7-7.7-10.4-12.9-6.3L260.3 486.8a31.86 31.86 0 000 50.3l450.8 352.1c5.3 4.1 12.9.4 12.9-6.3v-77.3c0-4.9-2.3-9.6-6.1-12.6l-360-281 360-281.1c3.8-3 6.1-7.7 6.1-12.6z"}}]},name:"left",theme:"outlined"},g=function(e,t){return a.createElement(d.Z,(0,l.Z)((0,l.Z)({},e),{},{ref:t,icon:v}))};g.displayName="LeftOutlined";var y,b=a.forwardRef(g),E=n(2897),w=n(61975),x=function(e){return!isNaN(parseFloat(e))&&isFinite(e)},_=function(e,t){var n={};for(var r in e)Object.prototype.hasOwnProperty.call(e,r)&&0>t.indexOf(r)&&(n[r]=e[r]);if(null!=e&&"function"==typeof Object.getOwnPropertySymbols)for(var i=0,r=Object.getOwnPropertySymbols(e);it.indexOf(r[i])&&Object.prototype.propertyIsEnumerable.call(e,r[i])&&(n[r[i]]=e[r[i]]);return n},S={xs:"479.98px",sm:"575.98px",md:"767.98px",lg:"991.98px",xl:"1199.98px",xxl:"1599.98px"},C=a.createContext({}),A=(y=0,function(){var e=arguments.length>0&&void 0!==arguments[0]?arguments[0]:"";return y+=1,"".concat(e).concat(y)}),D=a.forwardRef(function(e,t){var n=e.prefixCls,s=e.className,l=e.trigger,f=e.children,d=e.defaultCollapsed,p=void 0!==d&&d,v=e.theme,g=void 0===v?"dark":v,y=e.style,D=void 0===y?{}:y,O=e.collapsible,k=void 0!==O&&O,T=e.reverseArrow,N=void 0!==T&&T,P=e.width,I=void 0===P?200:P,M=e.collapsedWidth,F=void 0===M?80:M,R=e.zeroWidthTriggerStyle,L=e.breakpoint,j=e.onCollapse,B=e.onBreakpoint,U=_(e,["prefixCls","className","trigger","children","defaultCollapsed","theme","style","collapsible","reverseArrow","width","collapsedWidth","zeroWidthTriggerStyle","breakpoint","onCollapse","onBreakpoint"]),Z=(0,a.useContext)(E.Gs).siderHook,V=(0,a.useState)("collapsed"in U?U.collapsed:p),z=(0,o.Z)(V,2),H=z[0],W=z[1],$=(0,a.useState)(!1),G=(0,o.Z)($,2),q=G[0],K=G[1];(0,a.useEffect)(function(){"collapsed"in U&&W(U.collapsed)},[U.collapsed]);var Y=function(e,t){"collapsed"in U||W(e),null==j||j(e,t)},X=(0,a.useRef)();X.current=function(e){K(e.matches),null==B||B(e.matches),H!==e.matches&&Y(e.matches,"responsive")},(0,a.useEffect)(function(){function e(e){return X.current(e)}if("undefined"!=typeof window){var t,n=window.matchMedia;if(n&&L&&L in S){t=n("(max-width: ".concat(S[L],")"));try{t.addEventListener("change",e)}catch(r){t.addListener(e)}e(t)}}return function(){try{null==t||t.removeEventListener("change",e)}catch(n){null==t||t.removeListener(e)}}},[]),(0,a.useEffect)(function(){var e=A("ant-sider-");return Z.addSider(e),function(){return Z.removeSider(e)}},[]);var J=function(){Y(!H,"clickTrigger")},Q=(0,a.useContext)(w.E_).getPrefixCls,ee=function(){var e,o,d=Q("layout-sider",n),p=(0,c.Z)(U,["collapsed"]),v=H?F:I,y=x(v)?"".concat(v,"px"):String(v),E=0===parseFloat(String(F||0))?a.createElement("span",{onClick:J,className:u()("".concat(d,"-zero-width-trigger"),"".concat(d,"-zero-width-trigger-").concat(N?"right":"left")),style:R},l||a.createElement(h,null)):null,w={expanded:N?a.createElement(m.Z,null):a.createElement(b,null),collapsed:N?a.createElement(b,null):a.createElement(m.Z,null)}[H?"collapsed":"expanded"],_=null!==l?E||a.createElement("div",{className:"".concat(d,"-trigger"),onClick:J,style:{width:y}},l||w):null,S=(0,i.Z)((0,i.Z)({},D),{flex:"0 0 ".concat(y),maxWidth:y,minWidth:y,width:y}),C=u()(d,"".concat(d,"-").concat(g),(e={},(0,r.Z)(e,"".concat(d,"-collapsed"),!!H),(0,r.Z)(e,"".concat(d,"-has-trigger"),k&&null!==l&&!E),(0,r.Z)(e,"".concat(d,"-below"),!!q),(0,r.Z)(e,"".concat(d,"-zero-width"),0===parseFloat(y)),e),s);return a.createElement("aside",(0,i.Z)({className:C},p,{style:S,ref:t}),a.createElement("div",{className:"".concat(d,"-children")},f),k||q&&E?_:null)},et=a.useMemo(function(){return{siderCollapsed:H}},[H]);return a.createElement(C.Provider,{value:et},ee())});D.displayName="Sider";var O=D},2897:function(e,t,n){"use strict";n.d(t,{$_:function(){return y},Gs:function(){return d},VY:function(){return b},h4:function(){return g}});var r=n(74902),i=n(4942),o=n(97685),a=n(87462),s=n(67294),u=n(94184),c=n.n(u),l=n(61975),f=function(e,t){var n={};for(var r in e)Object.prototype.hasOwnProperty.call(e,r)&&0>t.indexOf(r)&&(n[r]=e[r]);if(null!=e&&"function"==typeof Object.getOwnPropertySymbols)for(var i=0,r=Object.getOwnPropertySymbols(e);it.indexOf(r[i])&&Object.prototype.propertyIsEnumerable.call(e,r[i])&&(n[r[i]]=e[r[i]]);return n},d=s.createContext({siderHook:{addSider:function(){return null},removeSider:function(){return null}}});function p(e){var t=e.suffixCls,n=e.tagName,r=e.displayName;return function(e){var i=function(r){var i,o=(0,s.useContext(l.E_).getPrefixCls)(t,r.prefixCls);return s.createElement(e,(0,a.Z)({prefixCls:o,tagName:n},r))};return i.displayName=r,i}}var h=function(e){var t=e.prefixCls,n=e.className,r=e.children,i=e.tagName,o=f(e,["prefixCls","className","children","tagName"]),u=c()(t,n);return s.createElement(i,(0,a.Z)({className:u},o),r)},m=function(e){var t,n=s.useContext(l.E_).direction,u=s.useState([]),p=(0,o.Z)(u,2),h=p[0],m=p[1],v=e.prefixCls,g=e.className,y=e.children,b=e.hasSider,E=e.tagName,w=f(e,["prefixCls","className","children","hasSider","tagName"]),x=c()(v,(t={},(0,i.Z)(t,"".concat(v,"-has-sider"),"boolean"==typeof b?b:h.length>0),(0,i.Z)(t,"".concat(v,"-rtl"),"rtl"===n),t),g),_=s.useMemo(function(){return{siderHook:{addSider:function(e){m(function(t){return[].concat((0,r.Z)(t),[e])})},removeSider:function(e){m(function(t){return t.filter(function(t){return t!==e})})}}}},[]);return s.createElement(d.Provider,{value:_},s.createElement(E,(0,a.Z)({className:x},w),y))},v=p({suffixCls:"layout",tagName:"section",displayName:"Layout"})(m),g=p({suffixCls:"layout-header",tagName:"header",displayName:"Header"})(h),y=p({suffixCls:"layout-footer",tagName:"footer",displayName:"Footer"})(h),b=p({suffixCls:"layout-content",tagName:"main",displayName:"Content"})(h);t.ZP=v},91577:function(e,t,n){"use strict";n.d(t,{Z:function(){return g},E:function(){return y}});var r=n(87462),i=n(15671),o=n(43144),a=n(32531),s=n(73568),u=n(67294),c={items_per_page:"/ page",jump_to:"Go to",jump_to_confirm:"confirm",page:"Page",prev_page:"Previous Page",next_page:"Next Page",prev_5:"Previous 5 Pages",next_5:"Next 5 Pages",prev_3:"Previous 3 Pages",next_3:"Next 3 Pages",page_size:"Page Size"},l={locale:"en_US",today:"Today",now:"Now",backToToday:"Back to today",ok:"Ok",clear:"Clear",month:"Month",year:"Year",timeSelect:"select time",dateSelect:"select date",weekSelect:"Choose a week",monthSelect:"Choose a month",yearSelect:"Choose a year",decadeSelect:"Choose a decade",yearFormat:"YYYY",dateFormat:"M/D/YYYY",dayFormat:"D",dateTimeFormat:"M/D/YYYY HH:mm:ss",monthBeforeYear:!0,previousMonth:"Previous month (PageUp)",nextMonth:"Next month (PageDown)",previousYear:"Last year (Control + left)",nextYear:"Next year (Control + right)",previousDecade:"Last decade",nextDecade:"Next decade",previousCentury:"Last century",nextCentury:"Next century"},f={placeholder:"Select time",rangePlaceholder:["Start time","End time"]},d={lang:(0,r.Z)({placeholder:"Select date",yearPlaceholder:"Select year",quarterPlaceholder:"Select quarter",monthPlaceholder:"Select month",weekPlaceholder:"Select week",rangePlaceholder:["Start date","End date"],rangeYearPlaceholder:["Start year","End year"],rangeMonthPlaceholder:["Start month","End month"],rangeWeekPlaceholder:["Start week","End week"]},l),timePickerLocale:(0,r.Z)({},f)},p=d,h="${label} is not a valid ${type}",m={locale:"en",Pagination:c,DatePicker:d,TimePicker:f,Calendar:p,global:{placeholder:"Please select"},Table:{filterTitle:"Filter menu",filterConfirm:"OK",filterReset:"Reset",filterEmptyText:"No filters",filterCheckall:"Select all items",filterSearchPlaceholder:"Search in filters",emptyText:"No data",selectAll:"Select current page",selectInvert:"Invert current page",selectNone:"Clear all data",selectionAll:"Select all data",sortTitle:"Sort",expand:"Expand row",collapse:"Collapse row",triggerDesc:"Click to sort descending",triggerAsc:"Click to sort ascending",cancelSort:"Click to cancel sorting"},Modal:{okText:"OK",cancelText:"Cancel",justOkText:"OK"},Popconfirm:{okText:"OK",cancelText:"Cancel"},Transfer:{titles:["",""],searchPlaceholder:"Search here",itemUnit:"item",itemsUnit:"items",remove:"Remove",selectCurrent:"Select current page",removeCurrent:"Remove current page",selectAll:"Select all data",removeAll:"Remove all data",selectInvert:"Invert current page"},Upload:{uploading:"Uploading...",removeFile:"Remove file",uploadError:"Upload error",previewFile:"Preview file",downloadFile:"Download file"},Empty:{description:"No Data"},Icon:{icon:"icon"},Text:{edit:"Edit",copy:"Copy",copied:"Copied",expand:"Expand"},PageHeader:{back:"Back"},Form:{optional:"(optional)",defaultValidateMessages:{default:"Field validation error for ${label}",required:"Please enter ${label}",enum:"${label} must be one of [${enum}]",whitespace:"${label} cannot be a blank character",date:{format:"${label} date format is invalid",parse:"${label} cannot be converted to a date",invalid:"${label} is an invalid date"},types:{string:h,method:h,array:h,object:h,number:h,date:h,boolean:h,integer:h,float:h,regexp:h,email:h,url:h,hex:h},string:{len:"${label} must be ${len} characters",min:"${label} must be at least ${min} characters",max:"${label} must be up to ${max} characters",range:"${label} must be between ${min}-${max} characters"},number:{len:"${label} must be equal to ${len}",min:"${label} must be minimum ${min}",max:"${label} must be maximum ${max}",range:"${label} must be between ${min}-${max}"},array:{len:"Must be ${len} ${label}",min:"At least ${min} ${label}",max:"At most ${max} ${label}",range:"The amount of ${label} must be between ${min}-${max}"},pattern:{mismatch:"${label} does not match the pattern ${pattern}"}}},Image:{preview:"Preview"}},v=(0,u.createContext)(void 0),g=function(e){(0,a.Z)(n,e);var t=(0,s.Z)(n);function n(){return(0,i.Z)(this,n),t.apply(this,arguments)}return(0,o.Z)(n,[{key:"getLocale",value:function(){var e=this.props,t=e.componentName,n=e.defaultLocale||m[null!=t?t:"global"],i=this.context,o=t&&i?i[t]:{};return(0,r.Z)((0,r.Z)({},n instanceof Function?n():n),o||{})}},{key:"getLocaleCode",value:function(){var e=this.context,t=e&&e.locale;return e&&e.exist&&!t?m.locale:t}},{key:"render",value:function(){return this.props.children(this.getLocale(),this.getLocaleCode(),this.context)}}]),n}(u.Component);function y(e,t){var n=u.useContext(v);return[u.useMemo(function(){var i=t||m[e||"global"],o=e&&n?n[e]:{};return(0,r.Z)((0,r.Z)({},"function"==typeof i?i():i),o||{})},[e,t,n])]}g.defaultProps={componentName:"global"},g.contextType=v},3808:function(e,t,n){"use strict";n.d(t,{Z:function(){return tc}});var r=n(87462),i=n(15671),o=n(43144),a=n(32531),s=n(73568),u=n(67294),c=n(4942),l=n(1413),f=n(74902),d=n(97685),p=n(45987),h=n(94184),m=n.n(h),v=n(96774),g=n.n(v),y=n(21770),b=n(80334),E=n(34243),w=n(15105),x=n(98423),_=n(56982),S=["children","locked"],C=u.createContext(null);function A(e,t){var n=(0,l.Z)({},e);return Object.keys(t).forEach(function(e){var r=t[e];void 0!==r&&(n[e]=r)}),n}function D(e){var t=e.children,n=e.locked,r=(0,p.Z)(e,S),i=u.useContext(C),o=(0,_.Z)(function(){return A(i,r)},[i,r],function(e,t){return!n&&(e[0]!==t[0]||!g()(e[1],t[1]))});return u.createElement(C.Provider,{value:o},t)}function O(e,t,n,r){var i=u.useContext(C),o=i.activeKey,a=i.onActive,s=i.onInactive,c={active:o===e};return t||(c.onMouseEnter=function(t){null==n||n({key:e,domEvent:t}),a(e)},c.onMouseLeave=function(t){null==r||r({key:e,domEvent:t}),s(e)}),c}var k=["item"];function T(e){var t=e.item,n=(0,p.Z)(e,k);return Object.defineProperty(n,"item",{get:function(){return(0,b.ZP)(!1,"`info.item` is deprecated since we will move to function component that not provides React Node instance in future."),t}}),n}function N(e){var t,n=e.icon,r=e.props,i=e.children;return(t="function"==typeof n?u.createElement(n,(0,l.Z)({},r)):n)||i||null}function P(e){var t=u.useContext(C),n=t.mode,r=t.rtl,i=t.inlineIndent;if("inline"!==n)return null;var o=e;return r?{paddingRight:o*i}:{paddingLeft:o*i}}var I=[],M=u.createContext(null);function F(){return u.useContext(M)}var R=u.createContext(I);function L(e){var t=u.useContext(R);return u.useMemo(function(){return void 0!==e?[].concat((0,f.Z)(t),[e]):t},[t,e])}var j=u.createContext(null),B=u.createContext(null);function U(e,t){return void 0===e?null:"".concat(e,"-").concat(t)}function Z(e){return U(u.useContext(B),e)}var V=u.createContext({}),z=["title","attribute","elementRef"],H=["style","className","eventKey","warnKey","disabled","itemIcon","children","role","onMouseEnter","onMouseLeave","onClick","onKeyDown","onFocus"],W=["active"],$=function(e){(0,a.Z)(n,e);var t=(0,s.Z)(n);function n(){return(0,i.Z)(this,n),t.apply(this,arguments)}return(0,o.Z)(n,[{key:"render",value:function(){var e=this.props,t=e.title,n=e.attribute,i=e.elementRef,o=(0,p.Z)(e,z),a=(0,x.Z)(o,["eventKey"]);return(0,b.ZP)(!n,"`attribute` of Menu.Item is deprecated. Please pass attribute directly."),u.createElement(E.Z.Item,(0,r.Z)({},n,{title:"string"==typeof t?t:void 0},a,{ref:i}))}}]),n}(u.Component),G=function(e){var t,n=e.style,i=e.className,o=e.eventKey,a=(e.warnKey,e.disabled),s=e.itemIcon,d=e.children,h=e.role,v=e.onMouseEnter,g=e.onMouseLeave,y=e.onClick,b=e.onKeyDown,E=e.onFocus,x=(0,p.Z)(e,H),_=Z(o),S=u.useContext(C),A=S.prefixCls,D=S.onItemClick,k=S.disabled,I=S.overflowDisabled,M=S.itemIcon,F=S.selectedKeys,R=S.onActive,j=u.useContext(V)._internalRenderMenuItem,B="".concat(A,"-item"),U=u.useRef(),z=u.useRef(),G=k||a,q=L(o),K=function(e){return{key:o,keyPath:(0,f.Z)(q).reverse(),item:U.current,domEvent:e}},Y=s||M,X=O(o,G,v,g),J=X.active,Q=(0,p.Z)(X,W),ee=F.includes(o),et=P(q.length),en=function(e){if(!G){var t=K(e);null==y||y(T(t)),D(t)}},er=function(e){if(null==b||b(e),e.which===w.Z.ENTER){var t=K(e);null==y||y(T(t)),D(t)}},ei=function(e){R(o),null==E||E(e)},eo={};"option"===e.role&&(eo["aria-selected"]=ee);var ea=u.createElement($,(0,r.Z)({ref:U,elementRef:z,role:null===h?"none":h||"menuitem",tabIndex:a?null:-1,"data-menu-id":I&&_?null:_},x,Q,eo,{component:"li","aria-disabled":a,style:(0,l.Z)((0,l.Z)({},et),n),className:m()(B,(t={},(0,c.Z)(t,"".concat(B,"-active"),J),(0,c.Z)(t,"".concat(B,"-selected"),ee),(0,c.Z)(t,"".concat(B,"-disabled"),G),t),i),onClick:en,onKeyDown:er,onFocus:ei}),d,u.createElement(N,{props:(0,l.Z)((0,l.Z)({},e),{},{isSelected:ee}),icon:Y}));return j&&(ea=j(ea,e)),ea};function q(e){var t=e.eventKey,n=F(),r=L(t);return(u.useEffect(function(){if(n)return n.registerPath(t,r),function(){n.unregisterPath(t,r)}},[r]),n)?null:u.createElement(G,e)}var K=q,Y=n(50344);function X(e,t){return(0,Y.Z)(e).map(function(e,n){if(u.isValidElement(e)){var r,i,o=e.key,a=null!==(r=null===(i=e.props)||void 0===i?void 0:i.eventKey)&&void 0!==r?r:o;null==a&&(a="tmp_key-".concat([].concat((0,f.Z)(t),[n]).join("-")));var s={key:a,eventKey:a};return u.cloneElement(e,s)}return e})}function J(e){var t=u.useRef(e);t.current=e;var n=u.useCallback(function(){for(var e,n=arguments.length,r=Array(n),i=0;i1&&(x.motionAppear=!1);var _=x.onVisibleChanged;return(x.onVisibleChanged=function(e){return v.current||e||E(!0),null==_?void 0:_(e)},b)?null:u.createElement(D,{mode:a,locked:!v.current},u.createElement(ef.Z,(0,r.Z)({visible:w},x,{forceRender:f,removeOnLeave:!1,leavedClassName:"".concat(c,"-hidden")}),function(e){var n=e.className,r=e.style;return u.createElement(en,{id:t,className:n,style:r},o)}))}var ep=["style","className","title","eventKey","warnKey","disabled","internalPopupClose","children","itemIcon","expandIcon","popupClassName","popupOffset","onClick","onMouseEnter","onMouseLeave","onTitleClick","onTitleMouseEnter","onTitleMouseLeave"],eh=["active"],em=function(e){var t,n=e.style,i=e.className,o=e.title,a=e.eventKey,s=(e.warnKey,e.disabled),f=e.internalPopupClose,h=e.children,v=e.itemIcon,g=e.expandIcon,y=e.popupClassName,b=e.popupOffset,w=e.onClick,x=e.onMouseEnter,_=e.onMouseLeave,S=e.onTitleClick,A=e.onTitleMouseEnter,k=e.onTitleMouseLeave,I=(0,p.Z)(e,ep),M=Z(a),F=u.useContext(C),R=F.prefixCls,B=F.mode,U=F.openKeys,z=F.disabled,H=F.overflowDisabled,W=F.activeKey,$=F.selectedKeys,G=F.itemIcon,q=F.expandIcon,K=F.onItemClick,Y=F.onOpenChange,X=F.onActive,Q=u.useContext(V)._internalRenderSubMenuItem,ee=u.useContext(j).isSubPathKey,et=L(),er="".concat(R,"-submenu"),ei=z||s,eo=u.useRef(),ea=u.useRef(),es=v||G,eu=g||q,ec=U.includes(a),ef=!H&&ec,em=ee($,a),ev=O(a,ei,A,k),eg=ev.active,ey=(0,p.Z)(ev,eh),eb=u.useState(!1),eE=(0,d.Z)(eb,2),ew=eE[0],ex=eE[1],e_=function(e){ei||ex(e)},eS=function(e){e_(!0),null==x||x({key:a,domEvent:e})},eC=function(e){e_(!1),null==_||_({key:a,domEvent:e})},eA=u.useMemo(function(){return eg||"inline"!==B&&(ew||ee([W],a))},[B,eg,W,ew,a,ee]),eD=P(et.length),eO=function(e){!ei&&(null==S||S({key:a,domEvent:e}),"inline"===B&&Y(a,!ec))},ek=J(function(e){null==w||w(T(e)),K(e)}),eT=function(e){"inline"!==B&&Y(a,e)},eN=function(){X(a)},eP=M&&"".concat(M,"-popup"),eI=u.createElement("div",(0,r.Z)({role:"menuitem",style:eD,className:"".concat(er,"-title"),tabIndex:ei?null:-1,ref:eo,title:"string"==typeof o?o:null,"data-menu-id":H&&M?null:M,"aria-expanded":ef,"aria-haspopup":!0,"aria-controls":eP,"aria-disabled":ei,onClick:eO,onFocus:eN},ey),o,u.createElement(N,{icon:"horizontal"!==B?eu:null,props:(0,l.Z)((0,l.Z)({},e),{},{isOpen:ef,isSubMenu:!0})},u.createElement("i",{className:"".concat(er,"-arrow")}))),eM=u.useRef(B);if("inline"!==B&&(eM.current=et.length>1?"vertical":B),!H){var eF=eM.current;eI=u.createElement(el,{mode:eF,prefixCls:er,visible:!f&&ef&&"inline"!==B,popupClassName:y,popupOffset:b,popup:u.createElement(D,{mode:"horizontal"===eF?"vertical":eF},u.createElement(en,{id:eP,ref:ea},h)),disabled:ei,onVisibleChange:eT},eI)}var eR=u.createElement(E.Z.Item,(0,r.Z)({role:"none"},I,{component:"li",style:n,className:m()(er,"".concat(er,"-").concat(B),i,(t={},(0,c.Z)(t,"".concat(er,"-open"),ef),(0,c.Z)(t,"".concat(er,"-active"),eA),(0,c.Z)(t,"".concat(er,"-selected"),em),(0,c.Z)(t,"".concat(er,"-disabled"),ei),t)),onMouseEnter:eS,onMouseLeave:eC}),eI,!H&&u.createElement(ed,{id:eP,open:ef,keyPath:et},h));return Q&&(eR=Q(eR,e)),u.createElement(D,{onItemClick:ek,mode:"horizontal"===B?"vertical":B,itemIcon:es,expandIcon:eu},eR)};function ev(e){var t,n=e.eventKey,r=e.children,i=L(n),o=X(r,i),a=F();return u.useEffect(function(){if(a)return a.registerPath(n,i),function(){a.unregisterPath(n,i)}},[i]),t=a?o:u.createElement(em,e,o),u.createElement(R.Provider,{value:i},t)}var eg=n(5110);function ey(e){var t=arguments.length>1&&void 0!==arguments[1]&&arguments[1];if((0,eg.Z)(e)){var n=e.nodeName.toLowerCase(),r=["input","select","textarea","button"].includes(n)||e.isContentEditable||"a"===n&&!!e.getAttribute("href"),i=e.getAttribute("tabindex"),o=Number(i),a=null;return i&&!Number.isNaN(o)?a=o:r&&null===a&&(a=0),r&&e.disabled&&(a=null),null!==a&&(a>=0||t&&a<0)}return!1}function eb(e){var t=arguments.length>1&&void 0!==arguments[1]&&arguments[1],n=(0,f.Z)(e.querySelectorAll("*")).filter(function(e){return ey(e,t)});return ey(e,t)&&n.unshift(e),n}var eE=w.Z.LEFT,ew=w.Z.RIGHT,ex=w.Z.UP,e_=w.Z.DOWN,eS=w.Z.ENTER,eC=w.Z.ESC,eA=w.Z.HOME,eD=w.Z.END,eO=[ex,e_,eE,ew];function ek(e,t,n,r){var i,o,a,s,u="prev",l="next",f="children",d="parent";if("inline"===e&&r===eS)return{inlineTrigger:!0};var p=(i={},(0,c.Z)(i,ex,u),(0,c.Z)(i,e_,l),i),h=(o={},(0,c.Z)(o,eE,n?l:u),(0,c.Z)(o,ew,n?u:l),(0,c.Z)(o,e_,f),(0,c.Z)(o,eS,f),o),m=(a={},(0,c.Z)(a,ex,u),(0,c.Z)(a,e_,l),(0,c.Z)(a,eS,f),(0,c.Z)(a,eC,d),(0,c.Z)(a,eE,n?f:d),(0,c.Z)(a,ew,n?d:f),a),v=null===(s=({inline:p,horizontal:h,vertical:m,inlineSub:p,horizontalSub:m,verticalSub:m})["".concat(e).concat(t?"":"Sub")])||void 0===s?void 0:s[r];switch(v){case u:return{offset:-1,sibling:!0};case l:return{offset:1,sibling:!0};case d:return{offset:-1,sibling:!1};case f:return{offset:1,sibling:!1};default:return null}}function eT(e){for(var t=e;t;){if(t.getAttribute("data-menu-list"))return t;t=t.parentElement}return null}function eN(e,t){for(var n=e||document.activeElement;n;){if(t.has(n))return n;n=n.parentElement}return null}function eP(e,t){return eb(e,!0).filter(function(e){return t.has(e)})}function eI(e,t,n){var r=arguments.length>3&&void 0!==arguments[3]?arguments[3]:1;if(!e)return null;var i=eP(e,t),o=i.length,a=i.findIndex(function(e){return n===e});return r<0?-1===a?a=o-1:a-=1:r>0&&(a+=1),i[a=(a+o)%o]}function eM(e,t,n,r,i,o,a,s,c,l){var f=u.useRef(),d=u.useRef();d.current=t;var p=function(){ei.Z.cancel(f.current)};return u.useEffect(function(){return function(){p()}},[]),function(u){var h=u.which;if([].concat(eO,[eS,eC,eA,eD]).includes(h)){var m=function(){return w=new Set,x=new Map,_=new Map,o().forEach(function(e){var t=document.querySelector("[data-menu-id='".concat(U(r,e),"']"));t&&(w.add(t),_.set(t,e),x.set(e,t))}),w};m();var v=x.get(t),g=eN(v,w),y=_.get(g),b=ek(e,1===a(y,!0).length,n,h);if(!b&&h!==eA&&h!==eD)return;(eO.includes(h)||[eA,eD].includes(h))&&u.preventDefault();var E=function(e){if(e){var t=e,n=e.querySelector("a");(null==n?void 0:n.getAttribute("href"))&&(t=n);var r=_.get(e);s(r),p(),f.current=(0,ei.Z)(function(){d.current===r&&t.focus()})}};if([eA,eD].includes(h)||b.sibling||!g){S=g&&"inline"!==e?eT(g):i.current;var w,x,_,S,C,A=eP(S,w);C=h===eA?A[0]:h===eD?A[A.length-1]:eI(S,w,g,b.offset),E(C)}else if(b.inlineTrigger)c(y);else if(b.offset>0)c(y,!0),p(),f.current=(0,ei.Z)(function(){m();var e=g.getAttribute("aria-controls"),t=document.getElementById(e),n=eI(t,w);E(n)},5);else if(b.offset<0){var D=a(y,!0),O=D[D.length-2],k=x.get(O);c(O,!1),E(k)}}null==l||l(u)}}var eF=Math.random().toFixed(5).toString().slice(2),eR=0;function eL(e){var t=(0,y.Z)(e,{value:e}),n=(0,d.Z)(t,2),r=n[0],i=n[1];return u.useEffect(function(){eR+=1;var e="".concat(eF,"-").concat(eR);i("rc-menu-uuid-".concat(e))},[]),r}function ej(e){Promise.resolve().then(e)}var eB="__RC_UTIL_PATH_SPLIT__",eU=function(e){return e.join(eB)},eZ=function(e){return e.split(eB)},eV="rc-menu-more";function ez(){var e=u.useState({}),t=(0,d.Z)(e,2)[1],n=(0,u.useRef)(new Map),r=(0,u.useRef)(new Map),i=u.useState([]),o=(0,d.Z)(i,2),a=o[0],s=o[1],c=(0,u.useRef)(0),l=(0,u.useRef)(!1),p=function(){l.current||t({})},h=(0,u.useCallback)(function(e,t){var i=eU(t);r.current.set(i,e),n.current.set(e,i),c.current+=1;var o=c.current;ej(function(){o===c.current&&p()})},[]),m=(0,u.useCallback)(function(e,t){var i=eU(t);r.current.delete(i),n.current.delete(e)},[]),v=(0,u.useCallback)(function(e){s(e)},[]),g=(0,u.useCallback)(function(e,t){var r=n.current.get(e)||"",i=eZ(r);return t&&a.includes(i[0])&&i.unshift(eV),i},[a]),y=(0,u.useCallback)(function(e,t){return e.some(function(e){return g(e,!0).includes(t)})},[g]),b=function(){var e=(0,f.Z)(n.current.keys());return a.length&&e.push(eV),e},E=(0,u.useCallback)(function(e){var t="".concat(n.current.get(e)).concat(eB),i=new Set;return(0,f.Z)(r.current.keys()).forEach(function(e){e.startsWith(t)&&i.add(r.current.get(e))}),i},[]);return u.useEffect(function(){return function(){l.current=!0}},[]),{registerPath:h,unregisterPath:m,refreshOverflowKeys:v,isSubPathKey:y,getKeyPath:g,getKeys:b,getSubPathKeys:E}}var eH=["prefixCls","style","className","tabIndex","children","direction","id","mode","inlineCollapsed","disabled","disabledOverflow","subMenuOpenDelay","subMenuCloseDelay","forceSubMenuRender","defaultOpenKeys","openKeys","activeKey","defaultActiveFirst","selectable","multiple","defaultSelectedKeys","selectedKeys","onSelect","onDeselect","inlineIndent","motion","defaultMotions","triggerSubMenuAction","builtinPlacements","itemIcon","expandIcon","overflowedIndicator","overflowedIndicatorPopupClassName","getPopupContainer","onClick","onOpenChange","onKeyDown","openAnimation","openTransitionName","_internalRenderMenuItem","_internalRenderSubMenuItem"],eW=[],e$=function(e){var t,n,i=e.prefixCls,o=void 0===i?"rc-menu":i,a=e.style,s=e.className,h=e.tabIndex,v=void 0===h?0:h,b=e.children,w=e.direction,x=e.id,_=e.mode,S=void 0===_?"vertical":_,C=e.inlineCollapsed,A=e.disabled,O=e.disabledOverflow,k=e.subMenuOpenDelay,N=void 0===k?.1:k,P=e.subMenuCloseDelay,I=void 0===P?.1:P,F=e.forceSubMenuRender,R=e.defaultOpenKeys,L=e.openKeys,U=e.activeKey,Z=e.defaultActiveFirst,z=e.selectable,H=void 0===z||z,W=e.multiple,$=void 0!==W&&W,G=e.defaultSelectedKeys,q=e.selectedKeys,Y=e.onSelect,Q=e.onDeselect,ee=e.inlineIndent,et=void 0===ee?24:ee,en=e.motion,er=e.defaultMotions,ei=e.triggerSubMenuAction,eo=void 0===ei?"hover":ei,ea=e.builtinPlacements,es=e.itemIcon,eu=e.expandIcon,ec=e.overflowedIndicator,el=void 0===ec?"...":ec,ef=e.overflowedIndicatorPopupClassName,ed=e.getPopupContainer,ep=e.onClick,eh=e.onOpenChange,em=e.onKeyDown,eg=(e.openAnimation,e.openTransitionName,e._internalRenderMenuItem),ey=e._internalRenderSubMenuItem,eb=(0,p.Z)(e,eH),eE=X(b,eW),ew=u.useState(!1),ex=(0,d.Z)(ew,2),e_=ex[0],eS=ex[1],eC=u.useRef(),eA=eL(x),eD="rtl"===w,eO=u.useMemo(function(){return("inline"===S||"vertical"===S)&&C?["vertical",C]:[S,!1]},[S,C]),ek=(0,d.Z)(eO,2),eT=ek[0],eN=ek[1],eP=u.useState(0),eI=(0,d.Z)(eP,2),eF=eI[0],eR=eI[1],ej=eF>=eE.length-1||"horizontal"!==eT||O,eB=(0,y.Z)(R,{value:L,postState:function(e){return e||eW}}),eU=(0,d.Z)(eB,2),eZ=eU[0],e$=eU[1],eG=function(e){e$(e),null==eh||eh(e)},eq=u.useState(eZ),eK=(0,d.Z)(eq,2),eY=eK[0],eX=eK[1],eJ="inline"===eT,eQ=u.useRef(!1);u.useEffect(function(){eJ&&eX(eZ)},[eZ]),u.useEffect(function(){if(!eQ.current){eQ.current=!0;return}eJ?e$(eY):eG(eW)},[eJ]);var e0=ez(),e1=e0.registerPath,e2=e0.unregisterPath,e4=e0.refreshOverflowKeys,e6=e0.isSubPathKey,e3=e0.getKeyPath,e8=e0.getKeys,e5=e0.getSubPathKeys,e9=u.useMemo(function(){return{registerPath:e1,unregisterPath:e2}},[e1,e2]),e7=u.useMemo(function(){return{isSubPathKey:e6}},[e6]);u.useEffect(function(){e4(ej?eW:eE.slice(eF+1).map(function(e){return e.key}))},[eF,ej]);var te=(0,y.Z)(U||Z&&(null===(t=eE[0])||void 0===t?void 0:t.key),{value:U}),tt=(0,d.Z)(te,2),tn=tt[0],tr=tt[1],ti=J(function(e){tr(e)}),to=J(function(){tr(void 0)}),ta=(0,y.Z)(G||[],{value:q,postState:function(e){return Array.isArray(e)?e:null==e?eW:[e]}}),ts=(0,d.Z)(ta,2),tu=ts[0],tc=ts[1],tl=function(e){if(H){var t,n=e.key,r=tu.includes(n);t=$?r?tu.filter(function(e){return e!==n}):[].concat((0,f.Z)(tu),[n]):[n],tc(t);var i=(0,l.Z)((0,l.Z)({},e),{},{selectedKeys:t});r?null==Q||Q(i):null==Y||Y(i)}!$&&eZ.length&&"inline"!==eT&&eG(eW)},tf=J(function(e){null==ep||ep(T(e)),tl(e)}),td=J(function(e,t){var n=eZ.filter(function(t){return t!==e});if(t)n.push(e);else if("inline"!==eT){var r=e5(e);n=n.filter(function(e){return!r.has(e)})}g()(eZ,n)||eG(n)}),tp=J(ed),th=eM(eT,tn,eD,eA,eC,e8,e3,tr,function(e,t){var n=null!=t?t:!eZ.includes(e);td(e,n)},em);u.useEffect(function(){eS(!0)},[]);var tm=u.useMemo(function(){return{_internalRenderMenuItem:eg,_internalRenderSubMenuItem:ey}},[eg,ey]),tv="horizontal"!==eT||O?eE:eE.map(function(e,t){return u.createElement(D,{key:e.key,overflowDisabled:t>eF},e)}),tg=u.createElement(E.Z,(0,r.Z)({id:x,ref:eC,prefixCls:"".concat(o,"-overflow"),component:"ul",itemComponent:K,className:m()(o,"".concat(o,"-root"),"".concat(o,"-").concat(eT),s,(n={},(0,c.Z)(n,"".concat(o,"-inline-collapsed"),eN),(0,c.Z)(n,"".concat(o,"-rtl"),eD),n)),dir:w,style:a,role:"menu",tabIndex:v,data:tv,renderRawItem:function(e){return e},renderRawRest:function(e){var t=e.length,n=t?eE.slice(-t):null;return u.createElement(ev,{eventKey:eV,title:el,disabled:ej,internalPopupClose:0===t,popupClassName:ef},n)},maxCount:"horizontal"!==eT||O?E.Z.INVALIDATE:E.Z.RESPONSIVE,ssr:"full","data-menu-list":!0,onVisibleChange:function(e){eR(e)},onKeyDown:th},eb));return u.createElement(V.Provider,{value:tm},u.createElement(B.Provider,{value:eA},u.createElement(D,{prefixCls:o,mode:eT,openKeys:eZ,rtl:eD,disabled:A,motion:e_?en:null,defaultMotions:e_?er:null,activeKey:tn,onActive:ti,onInactive:to,selectedKeys:tu,inlineIndent:et,subMenuOpenDelay:N,subMenuCloseDelay:I,forceSubMenuRender:F,builtinPlacements:ea,triggerSubMenuAction:eo,getPopupContainer:tp,itemIcon:es,expandIcon:eu,onItemClick:tf,onOpenChange:td},u.createElement(j.Provider,{value:e7},tg),u.createElement("div",{style:{display:"none"},"aria-hidden":!0},u.createElement(M.Provider,{value:e9},eE)))))},eG=["className","title","eventKey","children"],eq=["children"],eK=function(e){var t=e.className,n=e.title,i=(e.eventKey,e.children),o=(0,p.Z)(e,eG),a=u.useContext(C).prefixCls,s="".concat(a,"-item-group");return u.createElement("li",(0,r.Z)({},o,{onClick:function(e){return e.stopPropagation()},className:m()(s,t)}),u.createElement("div",{className:"".concat(s,"-title"),title:"string"==typeof n?n:void 0},n),u.createElement("ul",{className:"".concat(s,"-list")},i))};function eY(e){var t=e.children,n=(0,p.Z)(e,eq),r=L(n.eventKey),i=X(t,r);return F()?i:u.createElement(eK,(0,x.Z)(n,["warnKey"]),i)}function eX(e){var t=e.className,n=e.style,r=u.useContext(C).prefixCls;return F()?null:u.createElement("li",{className:m()("".concat(r,"-item-divider"),t),style:n})}var eJ=L,eQ=e$;eQ.Item=K,eQ.SubMenu=ev,eQ.ItemGroup=eY,eQ.Divider=eX;var e0=eQ,e1=n(89705),e2=n(30845),e4=(0,u.createContext)({prefixCls:"",firstLevel:!0,inlineCollapsed:!1}),e6=n(96159);function e3(e){var t,n,i=e.popupClassName,o=e.icon,a=e.title,s=u.useContext(e4),c=s.prefixCls,l=s.inlineCollapsed,f=s.antdMenuTheme,d=eJ();if(o){var p=(0,e6.l$)(a)&&"span"===a.type;n=u.createElement(u.Fragment,null,(0,e6.Tm)(o,{className:m()((0,e6.l$)(o)?null===(t=o.props)||void 0===t?void 0:t.className:"","".concat(c,"-item-icon"))}),p?a:u.createElement("span",{className:"".concat(c,"-title-content")},a))}else n=l&&!d.length&&a&&"string"==typeof a?u.createElement("div",{className:"".concat(c,"-inline-collapsed-noicon")},a.charAt(0)):u.createElement("span",{className:"".concat(c,"-title-content")},a);var h=u.useMemo(function(){return(0,r.Z)((0,r.Z)({},s),{firstLevel:!1})},[s]);return u.createElement(e4.Provider,{value:h},u.createElement(ev,(0,r.Z)({},(0,x.Z)(e,["icon"]),{title:n,popupClassName:m()(c,"".concat(c,"-").concat(f),i)})))}var e8=e3,e5=n(63386),e9=n(25908),e7=function(e,t){var n={};for(var r in e)Object.prototype.hasOwnProperty.call(e,r)&&0>t.indexOf(r)&&(n[r]=e[r]);if(null!=e&&"function"==typeof Object.getOwnPropertySymbols)for(var i=0,r=Object.getOwnPropertySymbols(e);it.indexOf(r[i])&&Object.prototype.propertyIsEnumerable.call(e,r[i])&&(n[r[i]]=e[r[i]]);return n},te=function(e){(0,a.Z)(n,e);var t=(0,s.Z)(n);function n(){var e;return(0,i.Z)(this,n),e=t.apply(this,arguments),e.renderItem=function(t){var n,i,o=t.siderCollapsed,a=e.context,s=a.prefixCls,l=a.firstLevel,f=a.inlineCollapsed,d=a.direction,p=a.disableMenuItemTitleTooltip,h=e.props,v=h.className,g=h.children,y=e.props,b=y.title,E=y.icon,w=y.danger,x=e7(y,["title","icon","danger"]),_=b;void 0===b?_=l?g:"":!1===b&&(_="");var S={title:_};o||f||(S.title=null,S.visible=!1);var C=(0,Y.Z)(g).length,A=u.createElement(K,(0,r.Z)({},x,{className:m()((n={},(0,c.Z)(n,"".concat(s,"-item-danger"),w),(0,c.Z)(n,"".concat(s,"-item-only-child"),(E?C+1:C)===1),n),v),title:"string"==typeof b?b:void 0}),(0,e6.Tm)(E,{className:m()((0,e6.l$)(E)?null===(i=E.props)||void 0===i?void 0:i.className:"","".concat(s,"-item-icon"))}),e.renderItemChildren(f));return p||(A=u.createElement(e5.Z,(0,r.Z)({},S,{placement:"rtl"===d?"left":"right",overlayClassName:"".concat(s,"-inline-collapsed-tooltip")}),A)),A},e}return(0,o.Z)(n,[{key:"renderItemChildren",value:function(e){var t=this.context,n=t.prefixCls,r=t.firstLevel,i=this.props,o=i.icon,a=i.children,s=u.createElement("span",{className:"".concat(n,"-title-content")},a);return(!o||(0,e6.l$)(a)&&"span"===a.type)&&a&&e&&r&&"string"==typeof a?u.createElement("div",{className:"".concat(n,"-inline-collapsed-noicon")},a.charAt(0)):s}},{key:"render",value:function(){return u.createElement(e9.D.Consumer,null,this.renderItem)}}]),n}(u.Component);te.contextType=e4;var tt=n(61975),tn=n(21687),tr=n(33603),ti=function(e,t){var n={};for(var r in e)Object.prototype.hasOwnProperty.call(e,r)&&0>t.indexOf(r)&&(n[r]=e[r]);if(null!=e&&"function"==typeof Object.getOwnPropertySymbols)for(var i=0,r=Object.getOwnPropertySymbols(e);it.indexOf(r[i])&&Object.prototype.propertyIsEnumerable.call(e,r[i])&&(n[r[i]]=e[r[i]]);return n},to=function(e){var t=e.prefixCls,n=e.className,i=e.dashed,o=ti(e,["prefixCls","className","dashed"]),a=(0,u.useContext(tt.E_).getPrefixCls)("menu",t),s=m()((0,c.Z)({},"".concat(a,"-item-divider-dashed"),!!i),n);return u.createElement(eX,(0,r.Z)({className:s},o))},ta=function(e,t){var n={};for(var r in e)Object.prototype.hasOwnProperty.call(e,r)&&0>t.indexOf(r)&&(n[r]=e[r]);if(null!=e&&"function"==typeof Object.getOwnPropertySymbols)for(var i=0,r=Object.getOwnPropertySymbols(e);it.indexOf(r[i])&&Object.prototype.propertyIsEnumerable.call(e,r[i])&&(n[r[i]]=e[r[i]]);return n},ts=function(e){(0,a.Z)(n,e);var t=(0,s.Z)(n);function n(e){var o;return(0,i.Z)(this,n),(o=t.call(this,e)).renderMenu=function(e){var t=e.getPopupContainer,n=e.getPrefixCls,i=e.direction,a=n(),s=o.props,c=s.prefixCls,l=s.className,f=s.theme,d=s.expandIcon,p=s._internalDisableMenuItemTitleTooltip,h=ta(s,["prefixCls","className","theme","expandIcon","_internalDisableMenuItemTitleTooltip"]),v=(0,x.Z)(h,["siderCollapsed","collapsedWidth"]),g=o.getInlineCollapsed(),y={horizontal:{motionName:"".concat(a,"-slide-up")},inline:tr.Z,other:{motionName:"".concat(a,"-zoom-big")}},b=n("menu",c),E=m()("".concat(b,"-").concat(f),l),w=(0,e2.default)(function(e,t,n,r,i){return{prefixCls:e,inlineCollapsed:t||!1,antdMenuTheme:n,direction:r,firstLevel:!0,disableMenuItemTitleTooltip:i}})(b,g,f,i,p);return u.createElement(e4.Provider,{value:w},u.createElement(e0,(0,r.Z)({getPopupContainer:t,overflowedIndicator:u.createElement(e1.Z,null),overflowedIndicatorPopupClassName:"".concat(b,"-").concat(f)},v,{inlineCollapsed:g,className:E,prefixCls:b,direction:i,defaultMotions:y,expandIcon:(0,e6.Tm)(d,{className:"".concat(b,"-submenu-expand-icon")})})))},(0,tn.Z)(!("inlineCollapsed"in e&&"inline"!==e.mode),"Menu","`inlineCollapsed` should only be used when `mode` is inline."),(0,tn.Z)(!(void 0!==e.siderCollapsed&&"inlineCollapsed"in e),"Menu","`inlineCollapsed` not control Menu under Sider. Should set `collapsed` on Sider instead."),o}return(0,o.Z)(n,[{key:"getInlineCollapsed",value:function(){var e=this.props,t=e.inlineCollapsed,n=e.siderCollapsed;return void 0!==n?n:t}},{key:"render",value:function(){return u.createElement(tt.C,null,this.renderMenu)}}]),n}(u.Component);ts.defaultProps={theme:"light"};var tu=function(e){(0,a.Z)(n,e);var t=(0,s.Z)(n);function n(){return(0,i.Z)(this,n),t.apply(this,arguments)}return(0,o.Z)(n,[{key:"render",value:function(){var e=this;return u.createElement(e9.D.Consumer,null,function(t){return u.createElement(ts,(0,r.Z)({},e.props,t))})}}]),n}(u.Component);tu.Divider=to,tu.Item=te,tu.SubMenu=e8,tu.ItemGroup=eY;var tc=tu},6348:function(e,t,n){"use strict";n.d(t,{Z:function(){return A}});var r,i=n(87462),o=n(4942),a=n(71002),s=n(97685),u=n(67294),c=n(94184),l=n.n(c),f=n(61975),d=n(99134),p=n(93355),h=["xxl","xl","lg","md","sm","xs"],m={xs:"(max-width: 575px)",sm:"(min-width: 576px)",md:"(min-width: 768px)",lg:"(min-width: 992px)",xl:"(min-width: 1200px)",xxl:"(min-width: 1600px)"},v=new Map,g=-1,y={},b={matchHandlers:{},dispatch:function(e){return y=e,v.forEach(function(e){return e(y)}),v.size>=1},subscribe:function(e){return v.size||this.register(),g+=1,v.set(g,e),e(y),g},unsubscribe:function(e){v.delete(e),v.size||this.unregister()},unregister:function(){var e=this;Object.keys(m).forEach(function(t){var n=m[t],r=e.matchHandlers[n];null==r||r.mql.removeListener(null==r?void 0:r.listener)}),v.clear()},register:function(){var e=this;Object.keys(m).forEach(function(t){var n=m[t],r=function(n){var r=n.matches;e.dispatch((0,i.Z)((0,i.Z)({},y),(0,o.Z)({},t,r)))},a=window.matchMedia(n);a.addListener(r),e.matchHandlers[n]={mql:a,listener:r},r(a)})}},E=n(98924),w=function(){return(0,E.Z)()&&window.document.documentElement},x=function(){if(!w())return!1;if(void 0!==r)return r;var e=document.createElement("div");return e.style.display="flex",e.style.flexDirection="column",e.style.rowGap="1px",e.appendChild(document.createElement("div")),e.appendChild(document.createElement("div")),document.body.appendChild(e),r=1===e.scrollHeight,document.body.removeChild(e),r},_=function(){var e=u.useState(!1),t=(0,s.Z)(e,2),n=t[0],r=t[1];return u.useEffect(function(){r(x())},[]),n},S=function(e,t){var n={};for(var r in e)Object.prototype.hasOwnProperty.call(e,r)&&0>t.indexOf(r)&&(n[r]=e[r]);if(null!=e&&"function"==typeof Object.getOwnPropertySymbols)for(var i=0,r=Object.getOwnPropertySymbols(e);it.indexOf(r[i])&&Object.prototype.propertyIsEnumerable.call(e,r[i])&&(n[r[i]]=e[r[i]]);return n};(0,p.b)("top","middle","bottom","stretch"),(0,p.b)("start","end","center","space-around","space-between");var C=u.forwardRef(function(e,t){var n,r=e.prefixCls,c=e.justify,p=e.align,m=e.className,v=e.style,g=e.children,y=e.gutter,E=void 0===y?0:y,w=e.wrap,x=S(e,["prefixCls","justify","align","className","style","children","gutter","wrap"]),C=u.useContext(f.E_),A=C.getPrefixCls,D=C.direction,O=u.useState({xs:!0,sm:!0,md:!0,lg:!0,xl:!0,xxl:!0}),k=(0,s.Z)(O,2),T=k[0],N=k[1],P=_(),I=u.useRef(E);u.useEffect(function(){var e=b.subscribe(function(e){var t=I.current||0;(!Array.isArray(t)&&"object"===(0,a.Z)(t)||Array.isArray(t)&&("object"===(0,a.Z)(t[0])||"object"===(0,a.Z)(t[1])))&&N(e)});return function(){return b.unsubscribe(e)}},[]);var M=function(){var e=[0,0];return(Array.isArray(E)?E:[E,0]).forEach(function(t,n){if("object"===(0,a.Z)(t))for(var r=0;r0?-(R[0]/2):void 0,U=R[1]>0?-(R[1]/2):void 0;if(B&&(j.marginLeft=B,j.marginRight=B),P){var Z=(0,s.Z)(R,2);j.rowGap=Z[1]}else U&&(j.marginTop=U,j.marginBottom=U);var V=u.useMemo(function(){return{gutter:R,wrap:w,supportFlexGap:P}},[R,w,P]);return u.createElement(d.Z.Provider,{value:V},u.createElement("div",(0,i.Z)({},x,{className:L,style:(0,i.Z)((0,i.Z)({},j),v),ref:t}),g))});C.displayName="Row";var A=C},63386:function(e,t,n){"use strict";n.d(t,{Z:function(){return F}});var r=n(4942),i=n(97685),o=n(87462),a=n(67294),s=n(71002),u=n(1413),c=n(45987),l=n(35398),f={adjustX:1,adjustY:1},d=[0,0],p={left:{points:["cr","cl"],overflow:f,offset:[-4,0],targetOffset:d},right:{points:["cl","cr"],overflow:f,offset:[4,0],targetOffset:d},top:{points:["bc","tc"],overflow:f,offset:[0,-4],targetOffset:d},bottom:{points:["tc","bc"],overflow:f,offset:[0,4],targetOffset:d},topLeft:{points:["bl","tl"],overflow:f,offset:[0,-4],targetOffset:d},leftTop:{points:["tr","tl"],overflow:f,offset:[-4,0],targetOffset:d},topRight:{points:["br","tr"],overflow:f,offset:[0,-4],targetOffset:d},rightTop:{points:["tl","tr"],overflow:f,offset:[4,0],targetOffset:d},bottomRight:{points:["tr","br"],overflow:f,offset:[0,4],targetOffset:d},rightBottom:{points:["bl","br"],overflow:f,offset:[4,0],targetOffset:d},bottomLeft:{points:["tl","bl"],overflow:f,offset:[0,4],targetOffset:d},leftBottom:{points:["br","bl"],overflow:f,offset:[-4,0],targetOffset:d}},h=function(e){var t=e.overlay,n=e.prefixCls,r=e.id,i=e.overlayInnerStyle;return a.createElement("div",{className:"".concat(n,"-inner"),id:r,role:"tooltip",style:i},"function"==typeof t?t():t)},m=function(e,t){var n=e.overlayClassName,r=e.trigger,i=void 0===r?["hover"]:r,f=e.mouseEnterDelay,d=void 0===f?0:f,m=e.mouseLeaveDelay,v=void 0===m?.1:m,g=e.overlayStyle,y=e.prefixCls,b=void 0===y?"rc-tooltip":y,E=e.children,w=e.onVisibleChange,x=e.afterVisibleChange,_=e.transitionName,S=e.animation,C=e.motion,A=e.placement,D=void 0===A?"right":A,O=e.align,k=void 0===O?{}:O,T=e.destroyTooltipOnHide,N=void 0!==T&&T,P=e.defaultVisible,I=e.getTooltipContainer,M=e.overlayInnerStyle,F=(0,c.Z)(e,["overlayClassName","trigger","mouseEnterDelay","mouseLeaveDelay","overlayStyle","prefixCls","children","onVisibleChange","afterVisibleChange","transitionName","animation","motion","placement","align","destroyTooltipOnHide","defaultVisible","getTooltipContainer","overlayInnerStyle"]),R=(0,a.useRef)(null);(0,a.useImperativeHandle)(t,function(){return R.current});var L=(0,u.Z)({},F);"visible"in e&&(L.popupVisible=e.visible);var j=function(){var t=e.arrowContent,n=void 0===t?null:t,r=e.overlay,i=e.id;return[a.createElement("div",{className:"".concat(b,"-arrow"),key:"arrow"},n),a.createElement(h,{key:"content",prefixCls:b,id:i,overlay:r,overlayInnerStyle:M})]},B=!1,U=!1;if("boolean"==typeof N)B=N;else if(N&&"object"===(0,s.Z)(N)){var Z=N.keepParent;B=!0===Z,U=!1===Z}return a.createElement(l.Z,(0,o.Z)({popupClassName:n,prefixCls:b,popup:j,action:i,builtinPlacements:p,popupPlacement:D,ref:R,popupAlign:k,getPopupContainer:I,onPopupVisibleChange:w,afterPopupVisibleChange:x,popupTransitionName:_,popupAnimation:S,popupMotion:C,defaultPopupVisible:P,destroyPopupOnHide:B,autoDestroy:U,mouseLeaveDelay:v,popupStyle:g,mouseEnterDelay:d},L),E)},v=(0,a.forwardRef)(m),g=n(21770),y=n(94184),b=n.n(y),E={adjustX:1,adjustY:1},w={adjustX:0,adjustY:0},x=[0,0];function _(e){return"boolean"==typeof e?e?E:w:(0,o.Z)((0,o.Z)({},w),e)}function S(e){var t=e.arrowWidth,n=void 0===t?4:t,r=e.horizontalArrowShift,i=void 0===r?16:r,a=e.verticalArrowShift,s=void 0===a?8:a,u=e.autoAdjustOverflow,c={left:{points:["cr","cl"],offset:[-4,0]},right:{points:["cl","cr"],offset:[4,0]},top:{points:["bc","tc"],offset:[0,-4]},bottom:{points:["tc","bc"],offset:[0,4]},topLeft:{points:["bl","tc"],offset:[-(i+n),-4]},leftTop:{points:["tr","cl"],offset:[-4,-(s+n)]},topRight:{points:["br","tc"],offset:[i+n,-4]},rightTop:{points:["tl","cr"],offset:[4,-(s+n)]},bottomRight:{points:["tr","bc"],offset:[i+n,4]},rightBottom:{points:["bl","cr"],offset:[4,s+n]},bottomLeft:{points:["tl","bc"],offset:[-(i+n),4]},leftBottom:{points:["br","cl"],offset:[-4,s+n]}};return Object.keys(c).forEach(function(t){c[t]=e.arrowPointAtCenter?(0,o.Z)((0,o.Z)({},c[t]),{overflow:_(u),targetOffset:x}):(0,o.Z)((0,o.Z)({},p[t]),{overflow:_(u)}),c[t].ignoreShake=!0}),c}var C=n(96159),A=n(61975),D=n(93355);(0,D.b)("success","processing","error","default","warning");var O=(0,D.b)("pink","red","yellow","orange","cyan","green","blue","purple","geekblue","magenta","volcano","gold","lime"),k=n(33603),T=function(e,t){var n={};for(var r in e)Object.prototype.hasOwnProperty.call(e,r)&&0>t.indexOf(r)&&(n[r]=e[r]);if(null!=e&&"function"==typeof Object.getOwnPropertySymbols)for(var i=0,r=Object.getOwnPropertySymbols(e);it.indexOf(r[i])&&Object.prototype.propertyIsEnumerable.call(e,r[i])&&(n[r[i]]=e[r[i]]);return n},N=function(e,t){var n={},r=(0,o.Z)({},e);return t.forEach(function(t){e&&t in e&&(n[t]=e[t],delete r[t])}),{picked:n,omitted:r}},P=RegExp("^(".concat(O.join("|"),")(-inverse)?$"));function I(e,t){var n=e.type;if((!0===n.__ANT_BUTTON||!0===n.__ANT_SWITCH||!0===n.__ANT_CHECKBOX||"button"===e.type)&&e.props.disabled){var r=N(e.props.style,["position","left","right","top","bottom","float","display","zIndex"]),i=r.picked,s=r.omitted,u=(0,o.Z)((0,o.Z)({display:"inline-block"},i),{cursor:"not-allowed",width:e.props.block?"100%":null}),c=(0,o.Z)((0,o.Z)({},s),{pointerEvents:"none"}),l=(0,C.Tm)(e,{style:c,className:null});return a.createElement("span",{style:u,className:b()(e.props.className,"".concat(t,"-disabled-compatible-wrapper"))},l)}return e}var M=a.forwardRef(function(e,t){var n,s,u=a.useContext(A.E_),c=u.getPopupContainer,l=u.getPrefixCls,f=u.direction,d=(0,g.Z)(!1,{value:e.visible,defaultValue:e.defaultVisible}),p=(0,i.Z)(d,2),h=p[0],m=p[1],y=function(){var t=e.title,n=e.overlay;return!t&&!n&&0!==t},E=function(t){var n;m(!y()&&t),y()||null===(n=e.onVisibleChange)||void 0===n||n.call(e,t)},w=function(){var t=e.builtinPlacements,n=e.arrowPointAtCenter,r=e.autoAdjustOverflow;return t||S({arrowPointAtCenter:n,autoAdjustOverflow:r})},x=function(e,t){var n=w(),r=Object.keys(n).filter(function(e){return n[e].points[0]===t.points[0]&&n[e].points[1]===t.points[1]})[0];if(r){var i=e.getBoundingClientRect(),o={top:"50%",left:"50%"};r.indexOf("top")>=0||r.indexOf("Bottom")>=0?o.top="".concat(i.height-t.offset[1],"px"):(r.indexOf("Top")>=0||r.indexOf("bottom")>=0)&&(o.top="".concat(-t.offset[1],"px")),r.indexOf("left")>=0||r.indexOf("Right")>=0?o.left="".concat(i.width-t.offset[0],"px"):(r.indexOf("right")>=0||r.indexOf("Left")>=0)&&(o.left="".concat(-t.offset[0],"px")),e.style.transformOrigin="".concat(o.left," ").concat(o.top)}},_=function(){var t=e.title,n=e.overlay;return 0===t?t:n||t||""},D=e.getPopupContainer,O=T(e,["getPopupContainer"]),N=e.prefixCls,M=e.openClassName,F=e.getTooltipContainer,R=e.overlayClassName,L=e.color,j=e.overlayInnerStyle,B=e.children,U=l("tooltip",N),Z=l(),V=h;!("visible"in e)&&y()&&(V=!1);var z=I((0,C.l$)(B)?B:a.createElement("span",null,B),U),H=z.props,W=b()(H.className,(0,r.Z)({},M||"".concat(U,"-open"),!0)),$=b()(R,(n={},(0,r.Z)(n,"".concat(U,"-rtl"),"rtl"===f),(0,r.Z)(n,"".concat(U,"-").concat(L),L&&P.test(L)),n)),G=j;return L&&!P.test(L)&&(G=(0,o.Z)((0,o.Z)({},j),{background:L}),s={background:L}),a.createElement(v,(0,o.Z)({},O,{prefixCls:U,overlayClassName:$,getTooltipContainer:D||F||c,ref:t,builtinPlacements:w(),overlay:_(),visible:V,onVisibleChange:E,onPopupAlign:x,overlayInnerStyle:G,arrowContent:a.createElement("span",{className:"".concat(U,"-arrow-content"),style:s}),motion:{motionName:(0,k.m)(Z,"zoom-big-fast",e.transitionName),motionDeadline:1e3}}),V?(0,C.Tm)(z,{className:W}):z)});M.displayName="Tooltip",M.defaultProps={placement:"top",mouseEnterDelay:.1,mouseLeaveDelay:.1,arrowPointAtCenter:!1,autoAdjustOverflow:!0};var F=M},72454:function(e,t,n){"use strict";var r=n(18698);Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0,Object.defineProperty(t,"resetWarned",{enumerable:!0,get:function(){return i.resetWarned}});var i=a(n(45520));function o(e){if("function"!=typeof WeakMap)return null;var t=new WeakMap,n=new WeakMap;return(o=function(e){return e?n:t})(e)}function a(e,t){if(!t&&e&&e.__esModule)return e;if(null===e||"object"!==r(e)&&"function"!=typeof e)return{default:e};var n=o(t);if(n&&n.has(e))return n.get(e);var i={},a=Object.defineProperty&&Object.getOwnPropertyDescriptor;for(var s in e)if("default"!==s&&Object.prototype.hasOwnProperty.call(e,s)){var u=a?Object.getOwnPropertyDescriptor(e,s):null;u&&(u.get||u.set)?Object.defineProperty(i,s,u):i[s]=e[s]}return i.default=e,n&&n.set(e,i),i}var s=function(e,t,n){(0,i.default)(e,"[antd: ".concat(t,"] ").concat(n))};t.default=s},63406:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var n=function(e){return!isNaN(parseFloat(e))&&isFinite(e)};t.default=n},1028:function(e,t,n){"use strict";var r=n(64836);Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var i=r(n(25633)).default;t.default=i},3236:function(e,t,n){"use strict";var r=n(18698);Object.defineProperty(t,"__esModule",{value:!0}),t.default=t.SizeContextProvider=void 0;var i=a(n(67294));function o(e){if("function"!=typeof WeakMap)return null;var t=new WeakMap,n=new WeakMap;return(o=function(e){return e?n:t})(e)}function a(e,t){if(!t&&e&&e.__esModule)return e;if(null===e||"object"!==r(e)&&"function"!=typeof e)return{default:e};var n=o(t);if(n&&n.has(e))return n.get(e);var i={},a=Object.defineProperty&&Object.getOwnPropertyDescriptor;for(var s in e)if("default"!==s&&Object.prototype.hasOwnProperty.call(e,s)){var u=a?Object.getOwnPropertyDescriptor(e,s):null;u&&(u.get||u.set)?Object.defineProperty(i,s,u):i[s]=e[s]}return i.default=e,n&&n.set(e,i),i}var s=i.createContext(void 0),u=function(e){var t=e.children,n=e.size;return i.createElement(s.Consumer,null,function(e){return i.createElement(s.Provider,{value:n||e},t)})};t.SizeContextProvider=u;var c=s;t.default=c},7177:function(e,t,n){"use strict";var r=n(64836),i=n(18698);Object.defineProperty(t,"__esModule",{value:!0}),t.ConfigContext=t.ConfigConsumer=void 0,t.withConfigConsumer=p;var o=r(n(10434)),a=c(n(67294)),s=r(n(95190));function u(e){if("function"!=typeof WeakMap)return null;var t=new WeakMap,n=new WeakMap;return(u=function(e){return e?n:t})(e)}function c(e,t){if(!t&&e&&e.__esModule)return e;if(null===e||"object"!==i(e)&&"function"!=typeof e)return{default:e};var n=u(t);if(n&&n.has(e))return n.get(e);var r={},o=Object.defineProperty&&Object.getOwnPropertyDescriptor;for(var a in e)if("default"!==a&&Object.prototype.hasOwnProperty.call(e,a)){var s=o?Object.getOwnPropertyDescriptor(e,a):null;s&&(s.get||s.set)?Object.defineProperty(r,a,s):r[a]=e[a]}return r.default=e,n&&n.set(e,r),r}var l=function(e,t){return t||(e?"ant-".concat(e):"ant")},f=a.createContext({getPrefixCls:l,renderEmpty:s.default});t.ConfigContext=f;var d=f.Consumer;function p(e){return function(t){var n=function(n){return a.createElement(d,null,function(r){var i,s=e.prefixCls,u=(0,r.getPrefixCls)(s,n.prefixCls);return a.createElement(t,(0,o.default)({},r,n,{prefixCls:u}))})},r=t.constructor,i=r&&r.displayName||t.name||"Component";return n.displayName="withConfigConsumer(".concat(i,")"),n}}t.ConfigConsumer=d},56301:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.registerTheme=s;var r=n(93399),i=n(4699),o=n(92138),a="-ant-".concat(Date.now(),"-").concat(Math.random());function s(e,t){var n={},s=function(e,t){var n=e.clone();return(n=(null==t?void 0:t(n))||n).toRgbString()},u=function(e,t){var r=new i.TinyColor(e),a=(0,o.generate)(r.toRgbString());n["".concat(t,"-color")]=s(r),n["".concat(t,"-color-disabled")]=a[1],n["".concat(t,"-color-hover")]=a[4],n["".concat(t,"-color-active")]=a[7],n["".concat(t,"-color-outline")]=r.clone().setAlpha(.2).toRgbString(),n["".concat(t,"-color-deprecated-bg")]=a[1],n["".concat(t,"-color-deprecated-border")]=a[3]};if(t.primaryColor){u(t.primaryColor,"primary");var c=new i.TinyColor(t.primaryColor),l=(0,o.generate)(c.toRgbString());l.forEach(function(e,t){n["primary-".concat(t+1)]=e}),n["primary-color-deprecated-l-35"]=s(c,function(e){return e.lighten(35)}),n["primary-color-deprecated-l-20"]=s(c,function(e){return e.lighten(20)}),n["primary-color-deprecated-t-20"]=s(c,function(e){return e.tint(20)}),n["primary-color-deprecated-t-50"]=s(c,function(e){return e.tint(50)}),n["primary-color-deprecated-f-12"]=s(c,function(e){return e.setAlpha(.12*e.getAlpha())});var f=new i.TinyColor(l[0]);n["primary-color-active-deprecated-f-30"]=s(f,function(e){return e.setAlpha(.3*e.getAlpha())}),n["primary-color-active-deprecated-d-02"]=s(f,function(e){return e.darken(2)})}t.successColor&&u(t.successColor,"success"),t.warningColor&&u(t.warningColor,"warning"),t.errorColor&&u(t.errorColor,"error"),t.infoColor&&u(t.infoColor,"info");var d=Object.keys(n).map(function(t){return"--".concat(e,"-").concat(t,": ").concat(n[t],";")});(0,r.updateCSS)("\n :root {\n ".concat(d.join("\n"),"\n }\n "),"".concat(a,"-dynamic-theme"))}},31929:function(e,t,n){"use strict";var r,i,o=n(64836),a=n(18698);Object.defineProperty(t,"__esModule",{value:!0}),Object.defineProperty(t,"ConfigConsumer",{enumerable:!0,get:function(){return h.ConfigConsumer}}),Object.defineProperty(t,"ConfigContext",{enumerable:!0,get:function(){return h.ConfigContext}}),t.globalConfig=t.defaultPrefixCls=t.defaultIconPrefixCls=t.default=t.configConsumerProps=void 0;var s=o(n(10434)),u=w(n(67294)),c=o(n(98399)),l=n(7866),f=o(n(67265)),d=w(n(53594)),p=o(n(73625)),h=n(7177),m=w(n(3236)),v=o(n(11187)),g=o(n(16318)),y=n(56301),b=o(n(56350));function E(e){if("function"!=typeof WeakMap)return null;var t=new WeakMap,n=new WeakMap;return(E=function(e){return e?n:t})(e)}function w(e,t){if(!t&&e&&e.__esModule)return e;if(null===e||"object"!==a(e)&&"function"!=typeof e)return{default:e};var n=E(t);if(n&&n.has(e))return n.get(e);var r={},i=Object.defineProperty&&Object.getOwnPropertyDescriptor;for(var o in e)if("default"!==o&&Object.prototype.hasOwnProperty.call(e,o)){var s=i?Object.getOwnPropertyDescriptor(e,o):null;s&&(s.get||s.set)?Object.defineProperty(r,o,s):r[o]=e[o]}return r.default=e,n&&n.set(e,r),r}var x=["getTargetContainer","getPopupContainer","rootPrefixCls","getPrefixCls","renderEmpty","csp","autoInsertSpaceInButton","locale","pageHeader"];t.configConsumerProps=x;var _=["getTargetContainer","getPopupContainer","renderEmpty","pageHeader","input","form"],S="ant";t.defaultPrefixCls=S;var C="anticon";function A(){return r||S}function D(){return i||C}t.defaultIconPrefixCls=C;var O=function(e){var t=e.prefixCls,n=e.iconPrefixCls,o=e.theme;void 0!==t&&(r=t),void 0!==n&&(i=n),o&&(0,y.registerTheme)(A(),o)},k=function(){return{getPrefixCls:function(e,t){return t||(e?"".concat(A(),"-").concat(e):A())},getIconPrefixCls:D,getRootPrefixCls:function(e,t){return e||r||(t&&t.includes("-")?t.replace(/^(.*)-[^-]*$/,"$1"):A())}}};t.globalConfig=k;var T=function(e){var t,n,r=e.children,i=e.csp,o=e.autoInsertSpaceInButton,a=e.form,p=e.locale,v=e.componentSize,g=e.direction,y=e.space,E=e.virtual,w=e.dropdownMatchSelectWidth,x=e.legacyLocale,S=e.parentContext,C=e.iconPrefixCls,A=u.useCallback(function(t,n){var r=e.prefixCls;if(n)return n;var i=r||S.getPrefixCls("");return t?"".concat(i,"-").concat(t):i},[S.getPrefixCls,e.prefixCls]),D=(0,s.default)((0,s.default)({},S),{csp:i,autoInsertSpaceInButton:o,locale:p||x,direction:g,space:y,virtual:E,dropdownMatchSelectWidth:w,getPrefixCls:A});_.forEach(function(t){var n=e[t];n&&(D[t]=n)});var O=(0,f.default)(function(){return D},D,function(e,t){var n=Object.keys(e),r=Object.keys(t);return n.length!==r.length||n.some(function(n){return e[n]!==t[n]})}),k=u.useMemo(function(){return{prefixCls:C,csp:i}},[C]),T=r,N={};return p&&(N=(null===(t=p.Form)||void 0===t?void 0:t.defaultValidateMessages)||(null===(n=b.default.Form)||void 0===n?void 0:n.defaultValidateMessages)||{}),a&&a.validateMessages&&(N=(0,s.default)((0,s.default)({},N),a.validateMessages)),Object.keys(N).length>0&&(T=u.createElement(l.FormProvider,{validateMessages:N},r)),p&&(T=u.createElement(d.default,{locale:p,_ANT_MARK__:d.ANT_MARK},T)),C&&(T=u.createElement(c.default.Provider,{value:k},T)),v&&(T=u.createElement(m.SizeContextProvider,{size:v},T)),u.createElement(h.ConfigContext.Provider,{value:O},T)},N=function(e){return u.useEffect(function(){e.direction&&(v.default.config({rtl:"rtl"===e.direction}),g.default.config({rtl:"rtl"===e.direction}))},[e.direction]),u.createElement(p.default,null,function(t,n,r){return u.createElement(h.ConfigConsumer,null,function(t){return u.createElement(T,(0,s.default)({parentContext:t,legacyLocale:r},e))})})};N.ConfigContext=h.ConfigContext,N.SizeContext=m.default,N.config=O;var P=N;t.default=P},95190:function(e,t,n){"use strict";var r=n(64836),i=n(18698);Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var o=c(n(67294)),a=r(n(36671)),s=n(31929);function u(e){if("function"!=typeof WeakMap)return null;var t=new WeakMap,n=new WeakMap;return(u=function(e){return e?n:t})(e)}function c(e,t){if(!t&&e&&e.__esModule)return e;if(null===e||"object"!==i(e)&&"function"!=typeof e)return{default:e};var n=u(t);if(n&&n.has(e))return n.get(e);var r={},o=Object.defineProperty&&Object.getOwnPropertyDescriptor;for(var a in e)if("default"!==a&&Object.prototype.hasOwnProperty.call(e,a)){var s=o?Object.getOwnPropertyDescriptor(e,a):null;s&&(s.get||s.set)?Object.defineProperty(r,a,s):r[a]=e[a]}return r.default=e,n&&n.set(e,r),r}var l=function(e){return o.createElement(s.ConfigConsumer,null,function(t){var n=(0,t.getPrefixCls)("empty");switch(e){case"Table":case"List":return o.createElement(a.default,{image:a.default.PRESENTED_IMAGE_SIMPLE});case"Select":case"TreeSelect":case"Cascader":case"Transfer":case"Mentions":return o.createElement(a.default,{image:a.default.PRESENTED_IMAGE_SIMPLE,className:"".concat(n,"-small")});default:return o.createElement(a.default,null)}})};t.default=l},25633:function(e,t,n){"use strict";var r=n(64836);Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var i=r(n(10434)),o=r(n(27590)),a=r(n(52040)),s={lang:(0,i.default)({placeholder:"Select date",yearPlaceholder:"Select year",quarterPlaceholder:"Select quarter",monthPlaceholder:"Select month",weekPlaceholder:"Select week",rangePlaceholder:["Start date","End date"],rangeYearPlaceholder:["Start year","End year"],rangeMonthPlaceholder:["Start month","End month"],rangeWeekPlaceholder:["Start week","End week"]},o.default),timePickerLocale:(0,i.default)({},a.default)};t.default=s},12268:function(e,t,n){"use strict";var r=n(18698);Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var i=s(n(67294)),o=n(31929);function a(e){if("function"!=typeof WeakMap)return null;var t=new WeakMap,n=new WeakMap;return(a=function(e){return e?n:t})(e)}function s(e,t){if(!t&&e&&e.__esModule)return e;if(null===e||"object"!==r(e)&&"function"!=typeof e)return{default:e};var n=a(t);if(n&&n.has(e))return n.get(e);var i={},o=Object.defineProperty&&Object.getOwnPropertyDescriptor;for(var s in e)if("default"!==s&&Object.prototype.hasOwnProperty.call(e,s)){var u=o?Object.getOwnPropertyDescriptor(e,s):null;u&&(u.get||u.set)?Object.defineProperty(i,s,u):i[s]=e[s]}return i.default=e,n&&n.set(e,i),i}var u=function(){var e=(0,i.useContext(o.ConfigContext).getPrefixCls)("empty-img-default");return i.createElement("svg",{className:e,width:"184",height:"152",viewBox:"0 0 184 152",xmlns:"http://www.w3.org/2000/svg"},i.createElement("g",{fill:"none",fillRule:"evenodd"},i.createElement("g",{transform:"translate(24 31.67)"},i.createElement("ellipse",{className:"".concat(e,"-ellipse"),cx:"67.797",cy:"106.89",rx:"67.797",ry:"12.668"}),i.createElement("path",{className:"".concat(e,"-path-1"),d:"M122.034 69.674L98.109 40.229c-1.148-1.386-2.826-2.225-4.593-2.225h-51.44c-1.766 0-3.444.839-4.592 2.225L13.56 69.674v15.383h108.475V69.674z"}),i.createElement("path",{className:"".concat(e,"-path-2"),d:"M101.537 86.214L80.63 61.102c-1.001-1.207-2.507-1.867-4.048-1.867H31.724c-1.54 0-3.047.66-4.048 1.867L6.769 86.214v13.792h94.768V86.214z",transform:"translate(13.56)"}),i.createElement("path",{className:"".concat(e,"-path-3"),d:"M33.83 0h67.933a4 4 0 0 1 4 4v93.344a4 4 0 0 1-4 4H33.83a4 4 0 0 1-4-4V4a4 4 0 0 1 4-4z"}),i.createElement("path",{className:"".concat(e,"-path-4"),d:"M42.678 9.953h50.237a2 2 0 0 1 2 2V36.91a2 2 0 0 1-2 2H42.678a2 2 0 0 1-2-2V11.953a2 2 0 0 1 2-2zM42.94 49.767h49.713a2.262 2.262 0 1 1 0 4.524H42.94a2.262 2.262 0 0 1 0-4.524zM42.94 61.53h49.713a2.262 2.262 0 1 1 0 4.525H42.94a2.262 2.262 0 0 1 0-4.525zM121.813 105.032c-.775 3.071-3.497 5.36-6.735 5.36H20.515c-3.238 0-5.96-2.29-6.734-5.36a7.309 7.309 0 0 1-.222-1.79V69.675h26.318c2.907 0 5.25 2.448 5.25 5.42v.04c0 2.971 2.37 5.37 5.277 5.37h34.785c2.907 0 5.277-2.421 5.277-5.393V75.1c0-2.972 2.343-5.426 5.25-5.426h26.318v33.569c0 .617-.077 1.216-.221 1.789z"})),i.createElement("path",{className:"".concat(e,"-path-5"),d:"M149.121 33.292l-6.83 2.65a1 1 0 0 1-1.317-1.23l1.937-6.207c-2.589-2.944-4.109-6.534-4.109-10.408C138.802 8.102 148.92 0 161.402 0 173.881 0 184 8.102 184 18.097c0 9.995-10.118 18.097-22.599 18.097-4.528 0-8.744-1.066-12.28-2.902z"}),i.createElement("g",{className:"".concat(e,"-g"),transform:"translate(149.65 15.383)"},i.createElement("ellipse",{cx:"20.654",cy:"3.167",rx:"2.849",ry:"2.815"}),i.createElement("path",{d:"M5.698 5.63H0L2.898.704zM9.259.704h4.985V5.63H9.259z"}))))};t.default=u},36671:function(e,t,n){"use strict";var r=n(64836),i=n(18698);Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var o=r(n(10434)),a=r(n(38416)),s=h(n(67294)),u=r(n(94184)),c=n(31929),l=r(n(73625)),f=r(n(12268)),d=r(n(69749));function p(e){if("function"!=typeof WeakMap)return null;var t=new WeakMap,n=new WeakMap;return(p=function(e){return e?n:t})(e)}function h(e,t){if(!t&&e&&e.__esModule)return e;if(null===e||"object"!==i(e)&&"function"!=typeof e)return{default:e};var n=p(t);if(n&&n.has(e))return n.get(e);var r={},o=Object.defineProperty&&Object.getOwnPropertyDescriptor;for(var a in e)if("default"!==a&&Object.prototype.hasOwnProperty.call(e,a)){var s=o?Object.getOwnPropertyDescriptor(e,a):null;s&&(s.get||s.set)?Object.defineProperty(r,a,s):r[a]=e[a]}return r.default=e,n&&n.set(e,r),r}var m=function(e,t){var n={};for(var r in e)Object.prototype.hasOwnProperty.call(e,r)&&0>t.indexOf(r)&&(n[r]=e[r]);if(null!=e&&"function"==typeof Object.getOwnPropertySymbols)for(var i=0,r=Object.getOwnPropertySymbols(e);it.indexOf(r[i])&&Object.prototype.propertyIsEnumerable.call(e,r[i])&&(n[r[i]]=e[r[i]]);return n},v=s.createElement(f.default,null),g=s.createElement(d.default,null),y=function(e){var t=e.className,n=e.prefixCls,r=e.image,i=void 0===r?v:r,f=e.description,d=e.children,p=e.imageStyle,h=m(e,["className","prefixCls","image","description","children","imageStyle"]),y=s.useContext(c.ConfigContext),b=y.getPrefixCls,E=y.direction;return s.createElement(l.default,{componentName:"Empty"},function(e){var r,c=b("empty",n),l=void 0!==f?f:e.description,m="string"==typeof l?l:"empty",v=null;return v="string"==typeof i?s.createElement("img",{alt:m,src:i}):i,s.createElement("div",(0,o.default)({className:(0,u.default)(c,(r={},(0,a.default)(r,"".concat(c,"-normal"),i===g),(0,a.default)(r,"".concat(c,"-rtl"),"rtl"===E),r),t)},h),s.createElement("div",{className:"".concat(c,"-image"),style:p},v),l&&s.createElement("div",{className:"".concat(c,"-description")},l),d&&s.createElement("div",{className:"".concat(c,"-footer")},d))})};y.PRESENTED_IMAGE_DEFAULT=v,y.PRESENTED_IMAGE_SIMPLE=g;var b=y;t.default=b},69749:function(e,t,n){"use strict";var r=n(18698);Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var i=s(n(67294)),o=n(31929);function a(e){if("function"!=typeof WeakMap)return null;var t=new WeakMap,n=new WeakMap;return(a=function(e){return e?n:t})(e)}function s(e,t){if(!t&&e&&e.__esModule)return e;if(null===e||"object"!==r(e)&&"function"!=typeof e)return{default:e};var n=a(t);if(n&&n.has(e))return n.get(e);var i={},o=Object.defineProperty&&Object.getOwnPropertyDescriptor;for(var s in e)if("default"!==s&&Object.prototype.hasOwnProperty.call(e,s)){var u=o?Object.getOwnPropertyDescriptor(e,s):null;u&&(u.get||u.set)?Object.defineProperty(i,s,u):i[s]=e[s]}return i.default=e,n&&n.set(e,i),i}var u=function(){var e=(0,i.useContext(o.ConfigContext).getPrefixCls)("empty-img-simple");return i.createElement("svg",{className:e,width:"64",height:"41",viewBox:"0 0 64 41",xmlns:"http://www.w3.org/2000/svg"},i.createElement("g",{transform:"translate(0 1)",fill:"none",fillRule:"evenodd"},i.createElement("ellipse",{className:"".concat(e,"-ellipse"),cx:"32",cy:"33",rx:"32",ry:"7"}),i.createElement("g",{className:"".concat(e,"-g"),fillRule:"nonzero"},i.createElement("path",{d:"M55 12.76L44.854 1.258C44.367.474 43.656 0 42.907 0H21.093c-.749 0-1.46.474-1.947 1.257L9 12.761V22h46v-9.24z"}),i.createElement("path",{d:"M41.613 15.931c0-1.605.994-2.93 2.227-2.931H55v18.137C55 33.26 53.68 35 52.05 35h-40.1C10.32 35 9 33.259 9 31.137V13h11.16c1.233 0 2.227 1.323 2.227 2.928v.022c0 1.605 1.005 2.901 2.237 2.901h14.752c1.232 0 2.237-1.308 2.237-2.913v-.007z",className:"".concat(e,"-path")}))))};t.default=u},87412:function(e,t,n){"use strict";var r=n(64836),i=n(18698);t.ZP=void 0;var o=r(n(38416)),a=r(n(10434)),s=r(n(27424)),u=y(n(67294)),c=r(n(94184)),l=r(n(18475)),f=r(n(54067)),d=r(n(67638)),p=r(n(68229)),h=n(62704),m=n(31929),v=r(n(63406));function g(e){if("function"!=typeof WeakMap)return null;var t=new WeakMap,n=new WeakMap;return(g=function(e){return e?n:t})(e)}function y(e,t){if(!t&&e&&e.__esModule)return e;if(null===e||"object"!==i(e)&&"function"!=typeof e)return{default:e};var n=g(t);if(n&&n.has(e))return n.get(e);var r={},o=Object.defineProperty&&Object.getOwnPropertyDescriptor;for(var a in e)if("default"!==a&&Object.prototype.hasOwnProperty.call(e,a)){var s=o?Object.getOwnPropertyDescriptor(e,a):null;s&&(s.get||s.set)?Object.defineProperty(r,a,s):r[a]=e[a]}return r.default=e,n&&n.set(e,r),r}var b,E=function(e,t){var n={};for(var r in e)Object.prototype.hasOwnProperty.call(e,r)&&0>t.indexOf(r)&&(n[r]=e[r]);if(null!=e&&"function"==typeof Object.getOwnPropertySymbols)for(var i=0,r=Object.getOwnPropertySymbols(e);it.indexOf(r[i])&&Object.prototype.propertyIsEnumerable.call(e,r[i])&&(n[r[i]]=e[r[i]]);return n},w={xs:"479.98px",sm:"575.98px",md:"767.98px",lg:"991.98px",xl:"1199.98px",xxl:"1599.98px"},x=u.createContext({}),_=(b=0,function(){var e=arguments.length>0&&void 0!==arguments[0]?arguments[0]:"";return b+=1,"".concat(e).concat(b)}),S=u.forwardRef(function(e,t){var n=e.prefixCls,r=e.className,i=e.trigger,g=e.children,y=e.defaultCollapsed,b=void 0!==y&&y,S=e.theme,C=void 0===S?"dark":S,A=e.style,D=void 0===A?{}:A,O=e.collapsible,k=void 0!==O&&O,T=e.reverseArrow,N=void 0!==T&&T,P=e.width,I=void 0===P?200:P,M=e.collapsedWidth,F=void 0===M?80:M,R=e.zeroWidthTriggerStyle,L=e.breakpoint,j=e.onCollapse,B=e.onBreakpoint,U=E(e,["prefixCls","className","trigger","children","defaultCollapsed","theme","style","collapsible","reverseArrow","width","collapsedWidth","zeroWidthTriggerStyle","breakpoint","onCollapse","onBreakpoint"]),Z=(0,u.useContext)(h.LayoutContext).siderHook,V=(0,u.useState)("collapsed"in U?U.collapsed:b),z=(0,s.default)(V,2),H=z[0],W=z[1],$=(0,u.useState)(!1),G=(0,s.default)($,2),q=G[0],K=G[1];(0,u.useEffect)(function(){"collapsed"in U&&W(U.collapsed)},[U.collapsed]);var Y=function(e,t){"collapsed"in U||W(e),null==j||j(e,t)},X=(0,u.useRef)();X.current=function(e){K(e.matches),null==B||B(e.matches),H!==e.matches&&Y(e.matches,"responsive")},(0,u.useEffect)(function(){function e(e){return X.current(e)}if("undefined"!=typeof window){var t,n=window.matchMedia;if(n&&L&&L in w){t=n("(max-width: ".concat(w[L],")"));try{t.addEventListener("change",e)}catch(r){t.addListener(e)}e(t)}}return function(){try{null==t||t.removeEventListener("change",e)}catch(n){null==t||t.removeListener(e)}}},[]),(0,u.useEffect)(function(){var e=_("ant-sider-");return Z.addSider(e),function(){return Z.removeSider(e)}},[]);var J=function(){Y(!H,"clickTrigger")},Q=(0,u.useContext)(m.ConfigContext).getPrefixCls,ee=function(){var e,s,h=Q("layout-sider",n),m=(0,l.default)(U,["collapsed"]),y=H?F:I,b=(0,v.default)(y)?"".concat(y,"px"):String(y),E=0===parseFloat(String(F||0))?u.createElement("span",{onClick:J,className:(0,c.default)("".concat(h,"-zero-width-trigger"),"".concat(h,"-zero-width-trigger-").concat(N?"right":"left")),style:R},i||u.createElement(f.default,null)):null,w={expanded:N?u.createElement(d.default,null):u.createElement(p.default,null),collapsed:N?u.createElement(p.default,null):u.createElement(d.default,null)}[H?"collapsed":"expanded"],x=null!==i?E||u.createElement("div",{className:"".concat(h,"-trigger"),onClick:J,style:{width:b}},i||w):null,_=(0,a.default)((0,a.default)({},D),{flex:"0 0 ".concat(b),maxWidth:b,minWidth:b,width:b}),S=(0,c.default)(h,"".concat(h,"-").concat(C),(e={},(0,o.default)(e,"".concat(h,"-collapsed"),!!H),(0,o.default)(e,"".concat(h,"-has-trigger"),k&&null!==i&&!E),(0,o.default)(e,"".concat(h,"-below"),!!q),(0,o.default)(e,"".concat(h,"-zero-width"),0===parseFloat(b)),e),r);return u.createElement("aside",(0,a.default)({className:S},m,{style:_,ref:t}),u.createElement("div",{className:"".concat(h,"-children")},g),k||q&&E?x:null)},et=u.useMemo(function(){return{siderCollapsed:H}},[H]);return u.createElement(x.Provider,{value:et},ee())});S.displayName="Sider";var C=S;t.ZP=C},62704:function(e,t,n){"use strict";var r=n(64836),i=n(18698);Object.defineProperty(t,"__esModule",{value:!0}),t.default=t.LayoutContext=t.Header=t.Footer=t.Content=void 0;var o=r(n(861)),a=r(n(38416)),s=r(n(27424)),u=r(n(10434)),c=p(n(67294)),l=r(n(94184)),f=n(31929);function d(e){if("function"!=typeof WeakMap)return null;var t=new WeakMap,n=new WeakMap;return(d=function(e){return e?n:t})(e)}function p(e,t){if(!t&&e&&e.__esModule)return e;if(null===e||"object"!==i(e)&&"function"!=typeof e)return{default:e};var n=d(t);if(n&&n.has(e))return n.get(e);var r={},o=Object.defineProperty&&Object.getOwnPropertyDescriptor;for(var a in e)if("default"!==a&&Object.prototype.hasOwnProperty.call(e,a)){var s=o?Object.getOwnPropertyDescriptor(e,a):null;s&&(s.get||s.set)?Object.defineProperty(r,a,s):r[a]=e[a]}return r.default=e,n&&n.set(e,r),r}var h=function(e,t){var n={};for(var r in e)Object.prototype.hasOwnProperty.call(e,r)&&0>t.indexOf(r)&&(n[r]=e[r]);if(null!=e&&"function"==typeof Object.getOwnPropertySymbols)for(var i=0,r=Object.getOwnPropertySymbols(e);it.indexOf(r[i])&&Object.prototype.propertyIsEnumerable.call(e,r[i])&&(n[r[i]]=e[r[i]]);return n},m=c.createContext({siderHook:{addSider:function(){return null},removeSider:function(){return null}}});function v(e){var t=e.suffixCls,n=e.tagName,r=e.displayName;return function(e){var i=function(r){var i,o=(0,c.useContext(f.ConfigContext).getPrefixCls)(t,r.prefixCls);return c.createElement(e,(0,u.default)({prefixCls:o,tagName:n},r))};return i.displayName=r,i}}t.LayoutContext=m;var g=function(e){var t=e.prefixCls,n=e.className,r=e.children,i=e.tagName,o=h(e,["prefixCls","className","children","tagName"]),a=(0,l.default)(t,n);return c.createElement(i,(0,u.default)({className:a},o),r)},y=function(e){var t,n=c.useContext(f.ConfigContext).direction,r=c.useState([]),i=(0,s.default)(r,2),d=i[0],p=i[1],v=e.prefixCls,g=e.className,y=e.children,b=e.hasSider,E=e.tagName,w=h(e,["prefixCls","className","children","hasSider","tagName"]),x=(0,l.default)(v,(t={},(0,a.default)(t,"".concat(v,"-has-sider"),"boolean"==typeof b?b:d.length>0),(0,a.default)(t,"".concat(v,"-rtl"),"rtl"===n),t),g),_=c.useMemo(function(){return{siderHook:{addSider:function(e){p(function(t){return[].concat((0,o.default)(t),[e])})},removeSider:function(e){p(function(t){return t.filter(function(t){return t!==e})})}}}},[]);return c.createElement(m.Provider,{value:_},c.createElement(E,(0,u.default)({className:x},w),y))},b=v({suffixCls:"layout",tagName:"section",displayName:"Layout"})(y),E=v({suffixCls:"layout-header",tagName:"header",displayName:"Header"})(g);t.Header=E;var w=v({suffixCls:"layout-footer",tagName:"footer",displayName:"Footer"})(g);t.Footer=w;var x=v({suffixCls:"layout-content",tagName:"main",displayName:"Content"})(g);t.Content=x;var _=b;t.default=_},73625:function(e,t,n){"use strict";var r=n(64836),i=n(18698);Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0,t.useLocaleReceiver=v;var o=r(n(10434)),a=r(n(56690)),s=r(n(89728)),u=r(n(61655)),c=r(n(26389)),l=h(n(67294)),f=r(n(95209)),d=r(n(89354));function p(e){if("function"!=typeof WeakMap)return null;var t=new WeakMap,n=new WeakMap;return(p=function(e){return e?n:t})(e)}function h(e,t){if(!t&&e&&e.__esModule)return e;if(null===e||"object"!==i(e)&&"function"!=typeof e)return{default:e};var n=p(t);if(n&&n.has(e))return n.get(e);var r={},o=Object.defineProperty&&Object.getOwnPropertyDescriptor;for(var a in e)if("default"!==a&&Object.prototype.hasOwnProperty.call(e,a)){var s=o?Object.getOwnPropertyDescriptor(e,a):null;s&&(s.get||s.set)?Object.defineProperty(r,a,s):r[a]=e[a]}return r.default=e,n&&n.set(e,r),r}var m=function(e){(0,u.default)(n,e);var t=(0,c.default)(n);function n(){return(0,a.default)(this,n),t.apply(this,arguments)}return(0,s.default)(n,[{key:"getLocale",value:function(){var e=this.props,t=e.componentName,n=e.defaultLocale||f.default[null!=t?t:"global"],r=this.context,i=t&&r?r[t]:{};return(0,o.default)((0,o.default)({},n instanceof Function?n():n),i||{})}},{key:"getLocaleCode",value:function(){var e=this.context,t=e&&e.locale;return e&&e.exist&&!t?f.default.locale:t}},{key:"render",value:function(){return this.props.children(this.getLocale(),this.getLocaleCode(),this.context)}}]),n}(l.Component);function v(e,t){var n=l.useContext(d.default);return[l.useMemo(function(){var r=t||f.default[e||"global"],i=e&&n?n[e]:{};return(0,o.default)((0,o.default)({},"function"==typeof r?r():r),i||{})},[e,t,n])]}t.default=m,m.defaultProps={componentName:"global"},m.contextType=d.default},89354:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var r=(0,n(67294).createContext)(void 0);t.default=r},95209:function(e,t,n){"use strict";var r=n(64836);Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var i=r(n(56350)).default;t.default=i},53594:function(e,t,n){"use strict";var r=n(64836),i=n(18698);Object.defineProperty(t,"__esModule",{value:!0}),t.default=t.ANT_MARK=void 0;var o=r(n(10434)),a=r(n(56690)),s=r(n(89728)),u=r(n(61655)),c=r(n(26389)),l=v(n(67294)),f=r(n(30845)),d=r(n(72454)),p=n(10625),h=r(n(89354));function m(e){if("function"!=typeof WeakMap)return null;var t=new WeakMap,n=new WeakMap;return(m=function(e){return e?n:t})(e)}function v(e,t){if(!t&&e&&e.__esModule)return e;if(null===e||"object"!==i(e)&&"function"!=typeof e)return{default:e};var n=m(t);if(n&&n.has(e))return n.get(e);var r={},o=Object.defineProperty&&Object.getOwnPropertyDescriptor;for(var a in e)if("default"!==a&&Object.prototype.hasOwnProperty.call(e,a)){var s=o?Object.getOwnPropertyDescriptor(e,a):null;s&&(s.get||s.set)?Object.defineProperty(r,a,s):r[a]=e[a]}return r.default=e,n&&n.set(e,r),r}var g="internalMark";t.ANT_MARK=g;var y=function(e){(0,u.default)(n,e);var t=(0,c.default)(n);function n(e){var r;return(0,a.default)(this,n),(r=t.call(this,e)).getMemoizedContextValue=(0,f.default)(function(e){return(0,o.default)((0,o.default)({},e),{exist:!0})}),(0,p.changeConfirmLocale)(e.locale&&e.locale.Modal),(0,d.default)(e._ANT_MARK__===g,"LocaleProvider","`LocaleProvider` is deprecated. Please use `locale` with `ConfigProvider` instead: http://u.ant.design/locale"),r}return(0,s.default)(n,[{key:"componentDidMount",value:function(){(0,p.changeConfirmLocale)(this.props.locale&&this.props.locale.Modal)}},{key:"componentDidUpdate",value:function(e){var t=this.props.locale;e.locale!==t&&(0,p.changeConfirmLocale)(t&&t.Modal)}},{key:"componentWillUnmount",value:function(){(0,p.changeConfirmLocale)()}},{key:"render",value:function(){var e=this.props,t=e.locale,n=e.children,r=this.getMemoizedContextValue(t);return l.createElement(h.default.Provider,{value:r},n)}}]),n}(l.Component);t.default=y,y.defaultProps={locale:{}}},56350:function(e,t,n){"use strict";var r=n(64836);Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var i=r(n(62273)),o=r(n(25633)),a=r(n(52040)),s=r(n(1028)),u="${label} is not a valid ${type}",c={locale:"en",Pagination:i.default,DatePicker:o.default,TimePicker:a.default,Calendar:s.default,global:{placeholder:"Please select"},Table:{filterTitle:"Filter menu",filterConfirm:"OK",filterReset:"Reset",filterEmptyText:"No filters",filterCheckall:"Select all items",filterSearchPlaceholder:"Search in filters",emptyText:"No data",selectAll:"Select current page",selectInvert:"Invert current page",selectNone:"Clear all data",selectionAll:"Select all data",sortTitle:"Sort",expand:"Expand row",collapse:"Collapse row",triggerDesc:"Click to sort descending",triggerAsc:"Click to sort ascending",cancelSort:"Click to cancel sorting"},Modal:{okText:"OK",cancelText:"Cancel",justOkText:"OK"},Popconfirm:{okText:"OK",cancelText:"Cancel"},Transfer:{titles:["",""],searchPlaceholder:"Search here",itemUnit:"item",itemsUnit:"items",remove:"Remove",selectCurrent:"Select current page",removeCurrent:"Remove current page",selectAll:"Select all data",removeAll:"Remove all data",selectInvert:"Invert current page"},Upload:{uploading:"Uploading...",removeFile:"Remove file",uploadError:"Upload error",previewFile:"Preview file",downloadFile:"Download file"},Empty:{description:"No Data"},Icon:{icon:"icon"},Text:{edit:"Edit",copy:"Copy",copied:"Copied",expand:"Expand"},PageHeader:{back:"Back"},Form:{optional:"(optional)",defaultValidateMessages:{default:"Field validation error for ${label}",required:"Please enter ${label}",enum:"${label} must be one of [${enum}]",whitespace:"${label} cannot be a blank character",date:{format:"${label} date format is invalid",parse:"${label} cannot be converted to a date",invalid:"${label} is an invalid date"},types:{string:u,method:u,array:u,object:u,number:u,date:u,boolean:u,integer:u,float:u,regexp:u,email:u,url:u,hex:u},string:{len:"${label} must be ${len} characters",min:"${label} must be at least ${min} characters",max:"${label} must be up to ${max} characters",range:"${label} must be between ${min}-${max} characters"},number:{len:"${label} must be equal to ${len}",min:"${label} must be minimum ${min}",max:"${label} must be maximum ${max}",range:"${label} must be between ${min}-${max}"},array:{len:"Must be ${len} ${label}",min:"At least ${min} ${label}",max:"At most ${max} ${label}",range:"The amount of ${label} must be between ${min}-${max}"},pattern:{mismatch:"${label} does not match the pattern ${pattern}"}}},Image:{preview:"Preview"}};t.default=c},64333:function(e,t,n){"use strict";var r=n(64836),i=n(18698);Object.defineProperty(t,"__esModule",{value:!0}),t.default=p;var o=r(n(10434)),a=r(n(27424)),s=d(n(67294)),u=r(n(45484)),c=n(31929),l=n(11187);function f(e){if("function"!=typeof WeakMap)return null;var t=new WeakMap,n=new WeakMap;return(f=function(e){return e?n:t})(e)}function d(e,t){if(!t&&e&&e.__esModule)return e;if(null===e||"object"!==i(e)&&"function"!=typeof e)return{default:e};var n=f(t);if(n&&n.has(e))return n.get(e);var r={},o=Object.defineProperty&&Object.getOwnPropertyDescriptor;for(var a in e)if("default"!==a&&Object.prototype.hasOwnProperty.call(e,a)){var s=o?Object.getOwnPropertyDescriptor(e,a):null;s&&(s.get||s.set)?Object.defineProperty(r,a,s):r[a]=e[a]}return r.default=e,n&&n.set(e,r),r}function p(e,t){return function(){var n,r,i=null,f={add:function(e,t){null==i||i.component.add(e,t)}},d=(0,u.default)(f),p=(0,a.default)(d,2),h=p[0],m=p[1];function v(a){var s=n("message",a.prefixCls),u=n(),c=a.key||(0,l.getKeyThenIncreaseKey)(),f=new Promise(function(n){var l=function(){return"function"==typeof a.onClose&&a.onClose(),n(!0)};e((0,o.default)((0,o.default)({},a),{prefixCls:s,rootPrefixCls:u,getPopupContainer:r}),function(e){var n=e.prefixCls;i=e.instance,h(t((0,o.default)((0,o.default)({},a),{key:c,onClose:l}),n))})}),d=function(){i&&i.removeNotice(c)};return d.then=function(e,t){return f.then(e,t)},d.promise=f,d}var g=s.useRef({});return g.current.open=v,["success","info","warning","error","loading"].forEach(function(e){return(0,l.attachTypeApi)(g.current,e)}),[g.current,s.createElement(c.ConfigConsumer,{key:"holder"},function(e){return n=e.getPrefixCls,r=e.getPopupContainer,m})]}}},11187:function(e,t,n){"use strict";var r,i,o,a,s=n(64836),u=n(18698);Object.defineProperty(t,"__esModule",{value:!0}),t.attachTypeApi=L,t.getInstance=t.default=void 0,t.getKeyThenIncreaseKey=k;var c=s(n(10434)),l=s(n(38416)),f=x(n(67294)),d=s(n(94184)),p=s(n(45238)),h=s(n(628)),m=s(n(42461)),v=s(n(42547)),g=s(n(37431)),y=s(n(94354)),b=s(n(64333)),E=x(n(31929));function w(e){if("function"!=typeof WeakMap)return null;var t=new WeakMap,n=new WeakMap;return(w=function(e){return e?n:t})(e)}function x(e,t){if(!t&&e&&e.__esModule)return e;if(null===e||"object"!==u(e)&&"function"!=typeof e)return{default:e};var n=w(t);if(n&&n.has(e))return n.get(e);var r={},i=Object.defineProperty&&Object.getOwnPropertyDescriptor;for(var o in e)if("default"!==o&&Object.prototype.hasOwnProperty.call(e,o)){var a=i?Object.getOwnPropertyDescriptor(e,o):null;a&&(a.get||a.set)?Object.defineProperty(r,o,a):r[o]=e[o]}return r.default=e,n&&n.set(e,r),r}var _=3,S=1,C="",A="move-up",D=!1,O=!1;function k(){return S++}function T(e){void 0!==e.top&&(i=e.top,r=null),void 0!==e.duration&&(_=e.duration),void 0!==e.prefixCls&&(C=e.prefixCls),void 0!==e.getContainer&&(o=e.getContainer),void 0!==e.transitionName&&(A=e.transitionName,r=null,D=!0),void 0!==e.maxCount&&(a=e.maxCount,r=null),void 0!==e.rtl&&(O=e.rtl)}function N(e,t){var n=e.prefixCls,s=e.getPopupContainer,u=(0,E.globalConfig)(),c=u.getPrefixCls,l=u.getRootPrefixCls,f=u.getIconPrefixCls,d=c("message",n||C),h=l(e.rootPrefixCls,d),m=f();if(r){t({prefixCls:d,rootPrefixCls:h,iconPrefixCls:m,instance:r});return}var v={prefixCls:d,transitionName:D?A:"".concat(h,"-").concat(A),style:{top:i},getContainer:o||s,maxCount:a};p.default.newInstance(v,function(e){if(r){t({prefixCls:d,rootPrefixCls:h,iconPrefixCls:m,instance:r});return}r=e,t({prefixCls:d,rootPrefixCls:h,iconPrefixCls:m,instance:e})})}var P={info:y.default,success:g.default,error:v.default,warning:m.default,loading:h.default};function I(e,t,n){var r,i=void 0!==e.duration?e.duration:_,o=P[e.type],a=(0,d.default)("".concat(t,"-custom-content"),(r={},(0,l.default)(r,"".concat(t,"-").concat(e.type),e.type),(0,l.default)(r,"".concat(t,"-rtl"),!0===O),r));return{key:e.key,duration:i,style:e.style||{},className:e.className,content:f.createElement(E.default,{iconPrefixCls:n},f.createElement("div",{className:a},e.icon||o&&f.createElement(o,null),f.createElement("span",null,e.content))),onClose:e.onClose,onClick:e.onClick}}function M(e){var t=e.key||k(),n=new Promise(function(n){var r=function(){return"function"==typeof e.onClose&&e.onClose(),n(!0)};N(e,function(n){var i=n.prefixCls,o=n.iconPrefixCls;n.instance.notice(I((0,c.default)((0,c.default)({},e),{key:t,onClose:r}),i,o))})}),i=function(){r&&r.removeNotice(t)};return i.then=function(e,t){return n.then(e,t)},i.promise=n,i}function F(e){return"[object Object]"===Object.prototype.toString.call(e)&&!!e.content}var R={open:M,config:T,destroy:function(e){r&&(e?(0,r.removeNotice)(e):((0,r.destroy)(),r=null))}};function L(e,t){e[t]=function(n,r,i){return F(n)?e.open((0,c.default)((0,c.default)({},n),{type:t})):("function"==typeof r&&(i=r,r=void 0),e.open({content:n,duration:r,type:t,onClose:i}))}}["success","info","warning","error","loading"].forEach(function(e){return L(R,e)}),R.warn=R.warning,R.useMessage=(0,b.default)(N,I);var j=function(){return null};t.getInstance=j;var B=R;t.default=B},10625:function(e,t,n){"use strict";var r=n(64836);Object.defineProperty(t,"__esModule",{value:!0}),t.changeConfirmLocale=s,t.getConfirmLocale=u;var i=r(n(10434)),o=r(n(56350)),a=(0,i.default)({},o.default.Modal);function s(e){a=e?(0,i.default)((0,i.default)({},a),e):(0,i.default)({},o.default.Modal)}function u(){return a}},23298:function(e,t,n){"use strict";var r=n(64836),i=n(18698);Object.defineProperty(t,"__esModule",{value:!0}),t.default=d;var o=r(n(10434)),a=r(n(27424)),s=f(n(67294)),u=r(n(45484)),c=n(31929);function l(e){if("function"!=typeof WeakMap)return null;var t=new WeakMap,n=new WeakMap;return(l=function(e){return e?n:t})(e)}function f(e,t){if(!t&&e&&e.__esModule)return e;if(null===e||"object"!==i(e)&&"function"!=typeof e)return{default:e};var n=l(t);if(n&&n.has(e))return n.get(e);var r={},o=Object.defineProperty&&Object.getOwnPropertyDescriptor;for(var a in e)if("default"!==a&&Object.prototype.hasOwnProperty.call(e,a)){var s=o?Object.getOwnPropertyDescriptor(e,a):null;s&&(s.get||s.set)?Object.defineProperty(r,a,s):r[a]=e[a]}return r.default=e,n&&n.set(e,r),r}function d(e,t){return function(){var n,r=null,i={add:function(e,t){null==r||r.component.add(e,t)}},l=(0,u.default)(i),f=(0,a.default)(l,2),d=f[0],p=f[1];function h(i){var a=n("notification",i.prefixCls);e((0,o.default)((0,o.default)({},i),{prefixCls:a}),function(e){var n=e.prefixCls;r=e.instance,d(t(i,n))})}var m=s.useRef({});return m.current.open=h,["success","info","warning","error"].forEach(function(e){m.current[e]=function(t){return m.current.open((0,o.default)((0,o.default)({},t),{type:e}))}}),[m.current,s.createElement(c.ConfigConsumer,{key:"holder"},function(e){return n=e.getPrefixCls,p})]}}},16318:function(e,t,n){"use strict";var r,i,o,a=n(64836),s=n(18698);Object.defineProperty(t,"__esModule",{value:!0}),t.getInstance=t.default=void 0;var u=a(n(64687)),c=a(n(10434)),l=a(n(38416)),f=x(n(67294)),d=a(n(45238)),p=a(n(40753)),h=a(n(94184)),m=a(n(67996)),v=a(n(74337)),g=a(n(67039)),y=a(n(93201)),b=a(n(23298)),E=x(n(31929));function w(e){if("function"!=typeof WeakMap)return null;var t=new WeakMap,n=new WeakMap;return(w=function(e){return e?n:t})(e)}function x(e,t){if(!t&&e&&e.__esModule)return e;if(null===e||"object"!==s(e)&&"function"!=typeof e)return{default:e};var n=w(t);if(n&&n.has(e))return n.get(e);var r={},i=Object.defineProperty&&Object.getOwnPropertyDescriptor;for(var o in e)if("default"!==o&&Object.prototype.hasOwnProperty.call(e,o)){var a=i?Object.getOwnPropertyDescriptor(e,o):null;a&&(a.get||a.set)?Object.defineProperty(r,o,a):r[o]=e[o]}return r.default=e,n&&n.set(e,r),r}var _=function(e,t,n,r){function i(e){return e instanceof n?e:new n(function(t){t(e)})}return new(n||(n=Promise))(function(n,o){function a(e){try{u(r.next(e))}catch(t){o(t)}}function s(e){try{u(r.throw(e))}catch(t){o(t)}}function u(e){e.done?n(e.value):i(e.value).then(a,s)}u((r=r.apply(e,t||[])).next())})},S={},C=4.5,A=24,D=24,O="",k="topRight",T=!1;function N(e){var t=e.duration,n=e.placement,a=e.bottom,s=e.top,u=e.getContainer,c=e.closeIcon,l=e.prefixCls;void 0!==l&&(O=l),void 0!==t&&(C=t),void 0!==n?k=n:e.rtl&&(k="topLeft"),void 0!==a&&(D=a),void 0!==s&&(A=s),void 0!==u&&(r=u),void 0!==c&&(i=c),void 0!==e.rtl&&(T=e.rtl),void 0!==e.maxCount&&(o=e.maxCount)}function P(e){var t,n=arguments.length>1&&void 0!==arguments[1]?arguments[1]:A,r=arguments.length>2&&void 0!==arguments[2]?arguments[2]:D;switch(e){case"topLeft":t={left:0,top:n,bottom:"auto"};break;case"topRight":t={right:0,top:n,bottom:"auto"};break;case"bottomLeft":t={left:0,top:"auto",bottom:r};break;default:t={right:0,top:"auto",bottom:r}}return t}function I(e,t){var n=e.placement,i=void 0===n?k:n,a=e.top,s=e.bottom,u=e.getContainer,c=void 0===u?r:u,f=e.prefixCls,p=(0,E.globalConfig)(),m=p.getPrefixCls,v=p.getIconPrefixCls,g=m("notification",f||O),y=v(),b="".concat(g,"-").concat(i),w=S[b];if(w){Promise.resolve(w).then(function(e){t({prefixCls:"".concat(g,"-notice"),iconPrefixCls:y,instance:e})});return}var x=(0,h.default)("".concat(g,"-").concat(i),(0,l.default)({},"".concat(g,"-rtl"),!0===T));S[b]=new Promise(function(e){d.default.newInstance({prefixCls:g,className:x,style:P(i,a,s),getContainer:c,maxCount:o},function(n){e(n),t({prefixCls:"".concat(g,"-notice"),iconPrefixCls:y,instance:n})})})}var M={success:m.default,info:y.default,error:v.default,warning:g.default};function F(e,t,n){var r=e.duration,o=e.icon,a=e.type,s=e.description,u=e.message,c=e.btn,d=e.onClose,m=e.onClick,v=e.key,g=e.style,y=e.className,b=e.closeIcon,w=void 0===b?i:b,x=void 0===r?C:r,_=null;o?_=f.createElement("span",{className:"".concat(t,"-icon")},e.icon):a&&(_=f.createElement(M[a]||null,{className:"".concat(t,"-icon ").concat(t,"-icon-").concat(a)}));var S=f.createElement("span",{className:"".concat(t,"-close-x")},w||f.createElement(p.default,{className:"".concat(t,"-close-icon")})),A=!s&&_?f.createElement("span",{className:"".concat(t,"-message-single-line-auto-margin")}):null;return{content:f.createElement(E.default,{iconPrefixCls:n},f.createElement("div",{className:_?"".concat(t,"-with-icon"):"",role:"alert"},_,f.createElement("div",{className:"".concat(t,"-message")},A,u),f.createElement("div",{className:"".concat(t,"-description")},s),c?f.createElement("span",{className:"".concat(t,"-btn")},c):null)),duration:x,closable:!0,closeIcon:S,onClose:d,onClick:m,key:v,style:g||{},className:(0,h.default)(y,(0,l.default)({},"".concat(t,"-").concat(a),!!a))}}function R(e){I(e,function(t){var n=t.prefixCls,r=t.iconPrefixCls;t.instance.notice(F(e,n,r))})}var L={open:R,close:function(e){Object.keys(S).forEach(function(t){return Promise.resolve(S[t]).then(function(t){t.removeNotice(e)})})},config:N,destroy:function(){Object.keys(S).forEach(function(e){Promise.resolve(S[e]).then(function(e){e.destroy()}),delete S[e]})}};["success","info","warning","error"].forEach(function(e){L[e]=function(t){return L.open((0,c.default)((0,c.default)({},t),{type:e}))}}),L.warn=L.warning,L.useNotification=(0,b.default)(I,F);var j=function(e){return _(void 0,void 0,void 0,u.default.mark(function e(){return u.default.wrap(function(e){for(;;)switch(e.prev=e.next){case 0:return e.abrupt("return",null);case 1:case"end":return e.stop()}},e)}))};t.getInstance=j;var B=L;t.default=B},52040:function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.default=void 0;var n={placeholder:"Select time",rangePlaceholder:["Start time","End time"]};t.default=n},9669:function(e,t,n){e.exports=n(51609)},55448:function(e,t,n){"use strict";var r=n(64867),i=n(36026),o=n(4372),a=n(15327),s=n(94097),u=n(84109),c=n(67985),l=n(85061);e.exports=function(e){return new Promise(function(t,n){var f=e.data,d=e.headers,p=e.responseType;r.isFormData(f)&&delete d["Content-Type"];var h=new XMLHttpRequest;if(e.auth){var m=e.auth.username||"",v=e.auth.password?unescape(encodeURIComponent(e.auth.password)):"";d.Authorization="Basic "+btoa(m+":"+v)}var g=s(e.baseURL,e.url);function y(){if(h){var r="getAllResponseHeaders"in h?u(h.getAllResponseHeaders()):null,o={data:p&&"text"!==p&&"json"!==p?h.response:h.responseText,status:h.status,statusText:h.statusText,headers:r,config:e,request:h};i(t,n,o),h=null}}if(h.open(e.method.toUpperCase(),a(g,e.params,e.paramsSerializer),!0),h.timeout=e.timeout,"onloadend"in h?h.onloadend=y:h.onreadystatechange=function(){h&&4===h.readyState&&(0!==h.status||h.responseURL&&0===h.responseURL.indexOf("file:"))&&setTimeout(y)},h.onabort=function(){h&&(n(l("Request aborted",e,"ECONNABORTED",h)),h=null)},h.onerror=function(){n(l("Network Error",e,null,h)),h=null},h.ontimeout=function(){var t="timeout of "+e.timeout+"ms exceeded";e.timeoutErrorMessage&&(t=e.timeoutErrorMessage),n(l(t,e,e.transitional&&e.transitional.clarifyTimeoutError?"ETIMEDOUT":"ECONNABORTED",h)),h=null},r.isStandardBrowserEnv()){var b=(e.withCredentials||c(g))&&e.xsrfCookieName?o.read(e.xsrfCookieName):void 0;b&&(d[e.xsrfHeaderName]=b)}"setRequestHeader"in h&&r.forEach(d,function(e,t){void 0===f&&"content-type"===t.toLowerCase()?delete d[t]:h.setRequestHeader(t,e)}),r.isUndefined(e.withCredentials)||(h.withCredentials=!!e.withCredentials),p&&"json"!==p&&(h.responseType=e.responseType),"function"==typeof e.onDownloadProgress&&h.addEventListener("progress",e.onDownloadProgress),"function"==typeof e.onUploadProgress&&h.upload&&h.upload.addEventListener("progress",e.onUploadProgress),e.cancelToken&&e.cancelToken.promise.then(function(e){h&&(h.abort(),n(e),h=null)}),f||(f=null),h.send(f)})}},51609:function(e,t,n){"use strict";var r=n(64867),i=n(91849),o=n(30321),a=n(47185),s=n(45655);function u(e){var t=new o(e),n=i(o.prototype.request,t);return r.extend(n,o.prototype,t),r.extend(n,t),n}var c=u(s);c.Axios=o,c.create=function(e){return u(a(c.defaults,e))},c.Cancel=n(65263),c.CancelToken=n(14972),c.isCancel=n(26502),c.all=function(e){return Promise.all(e)},c.spread=n(8713),c.isAxiosError=n(16268),e.exports=c,e.exports.default=c},65263:function(e){"use strict";function t(e){this.message=e}t.prototype.toString=function(){return"Cancel"+(this.message?": "+this.message:"")},t.prototype.__CANCEL__=!0,e.exports=t},14972:function(e,t,n){"use strict";var r=n(65263);function i(e){if("function"!=typeof e)throw TypeError("executor must be a function.");this.promise=new Promise(function(e){t=e});var t,n=this;e(function(e){!n.reason&&(n.reason=new r(e),t(n.reason))})}i.prototype.throwIfRequested=function(){if(this.reason)throw this.reason},i.source=function(){var e;return{token:new i(function(t){e=t}),cancel:e}},e.exports=i},26502:function(e){"use strict";e.exports=function(e){return!!(e&&e.__CANCEL__)}},30321:function(e,t,n){"use strict";var r=n(64867),i=n(15327),o=n(80782),a=n(13572),s=n(47185),u=n(54875),c=u.validators;function l(e){this.defaults=e,this.interceptors={request:new o,response:new o}}l.prototype.request=function(e){"string"==typeof e?(e=arguments[1]||{},e.url=arguments[0]):e=e||{},(e=s(this.defaults,e)).method?e.method=e.method.toLowerCase():this.defaults.method?e.method=this.defaults.method.toLowerCase():e.method="get";var t,n=e.transitional;void 0!==n&&u.assertOptions(n,{silentJSONParsing:c.transitional(c.boolean,"1.0.0"),forcedJSONParsing:c.transitional(c.boolean,"1.0.0"),clarifyTimeoutError:c.transitional(c.boolean,"1.0.0")},!1);var r=[],i=!0;this.interceptors.request.forEach(function(t){("function"!=typeof t.runWhen||!1!==t.runWhen(e))&&(i=i&&t.synchronous,r.unshift(t.fulfilled,t.rejected))});var o=[];if(this.interceptors.response.forEach(function(e){o.push(e.fulfilled,e.rejected)}),!i){var l=[a,void 0];for(Array.prototype.unshift.apply(l,r),l=l.concat(o),t=Promise.resolve(e);l.length;)t=t.then(l.shift(),l.shift());return t}for(var f=e;r.length;){var d=r.shift(),p=r.shift();try{f=d(f)}catch(h){p(h);break}}try{t=a(f)}catch(m){return Promise.reject(m)}for(;o.length;)t=t.then(o.shift(),o.shift());return t},l.prototype.getUri=function(e){return e=s(this.defaults,e),i(e.url,e.params,e.paramsSerializer).replace(/^\?/,"")},r.forEach(["delete","get","head","options"],function(e){l.prototype[e]=function(t,n){return this.request(s(n||{},{method:e,url:t,data:(n||{}).data}))}}),r.forEach(["post","put","patch"],function(e){l.prototype[e]=function(t,n,r){return this.request(s(r||{},{method:e,url:t,data:n}))}}),e.exports=l},80782:function(e,t,n){"use strict";var r=n(64867);function i(){this.handlers=[]}i.prototype.use=function(e,t,n){return this.handlers.push({fulfilled:e,rejected:t,synchronous:!!n&&n.synchronous,runWhen:n?n.runWhen:null}),this.handlers.length-1},i.prototype.eject=function(e){this.handlers[e]&&(this.handlers[e]=null)},i.prototype.forEach=function(e){r.forEach(this.handlers,function(t){null!==t&&e(t)})},e.exports=i},94097:function(e,t,n){"use strict";var r=n(91793),i=n(7303);e.exports=function(e,t){return e&&!r(t)?i(e,t):t}},85061:function(e,t,n){"use strict";var r=n(80481);e.exports=function(e,t,n,i,o){return r(Error(e),t,n,i,o)}},13572:function(e,t,n){"use strict";var r=n(64867),i=n(18527),o=n(26502),a=n(45655);function s(e){e.cancelToken&&e.cancelToken.throwIfRequested()}e.exports=function(e){return s(e),e.headers=e.headers||{},e.data=i.call(e,e.data,e.headers,e.transformRequest),e.headers=r.merge(e.headers.common||{},e.headers[e.method]||{},e.headers),r.forEach(["delete","get","head","post","put","patch","common"],function(t){delete e.headers[t]}),(e.adapter||a.adapter)(e).then(function(t){return s(e),t.data=i.call(e,t.data,t.headers,e.transformResponse),t},function(t){return!o(t)&&(s(e),t&&t.response&&(t.response.data=i.call(e,t.response.data,t.response.headers,e.transformResponse))),Promise.reject(t)})}},80481:function(e){"use strict";e.exports=function(e,t,n,r,i){return e.config=t,n&&(e.code=n),e.request=r,e.response=i,e.isAxiosError=!0,e.toJSON=function(){return{message:this.message,name:this.name,description:this.description,number:this.number,fileName:this.fileName,lineNumber:this.lineNumber,columnNumber:this.columnNumber,stack:this.stack,config:this.config,code:this.code}},e}},47185:function(e,t,n){"use strict";var r=n(64867);e.exports=function(e,t){t=t||{};var n={},i=["url","method","data"],o=["headers","auth","proxy","params"],a=["baseURL","transformRequest","transformResponse","paramsSerializer","timeout","timeoutMessage","withCredentials","adapter","responseType","xsrfCookieName","xsrfHeaderName","onUploadProgress","onDownloadProgress","decompress","maxContentLength","maxBodyLength","maxRedirects","transport","httpAgent","httpsAgent","cancelToken","socketPath","responseEncoding"],s=["validateStatus"];function u(e,t){return r.isPlainObject(e)&&r.isPlainObject(t)?r.merge(e,t):r.isPlainObject(t)?r.merge({},t):r.isArray(t)?t.slice():t}function c(i){r.isUndefined(t[i])?r.isUndefined(e[i])||(n[i]=u(void 0,e[i])):n[i]=u(e[i],t[i])}r.forEach(i,function(e){r.isUndefined(t[e])||(n[e]=u(void 0,t[e]))}),r.forEach(o,c),r.forEach(a,function(i){r.isUndefined(t[i])?r.isUndefined(e[i])||(n[i]=u(void 0,e[i])):n[i]=u(void 0,t[i])}),r.forEach(s,function(r){r in t?n[r]=u(e[r],t[r]):r in e&&(n[r]=u(void 0,e[r]))});var l=i.concat(o).concat(a).concat(s),f=Object.keys(e).concat(Object.keys(t)).filter(function(e){return -1===l.indexOf(e)});return r.forEach(f,c),n}},36026:function(e,t,n){"use strict";var r=n(85061);e.exports=function(e,t,n){var i=n.config.validateStatus;!n.status||!i||i(n.status)?e(n):t(r("Request failed with status code "+n.status,n.config,null,n.request,n))}},18527:function(e,t,n){"use strict";var r=n(64867),i=n(45655);e.exports=function(e,t,n){var o=this||i;return r.forEach(n,function(n){e=n.call(o,e,t)}),e}},45655:function(e,t,n){"use strict";var r=n(83454),i=n(64867),o=n(16016),a=n(80481),s={"Content-Type":"application/x-www-form-urlencoded"};function u(e,t){!i.isUndefined(e)&&i.isUndefined(e["Content-Type"])&&(e["Content-Type"]=t)}function c(){var e;return"undefined"!=typeof XMLHttpRequest?e=n(55448):void 0!==r&&"[object process]"===Object.prototype.toString.call(r)&&(e=n(55448)),e}function l(e,t,n){if(i.isString(e))try{return(t||JSON.parse)(e),i.trim(e)}catch(r){if("SyntaxError"!==r.name)throw r}return(n||JSON.stringify)(e)}var f={transitional:{silentJSONParsing:!0,forcedJSONParsing:!0,clarifyTimeoutError:!1},adapter:c(),transformRequest:[function(e,t){return(o(t,"Accept"),o(t,"Content-Type"),i.isFormData(e)||i.isArrayBuffer(e)||i.isBuffer(e)||i.isStream(e)||i.isFile(e)||i.isBlob(e))?e:i.isArrayBufferView(e)?e.buffer:i.isURLSearchParams(e)?(u(t,"application/x-www-form-urlencoded;charset=utf-8"),e.toString()):i.isObject(e)||t&&"application/json"===t["Content-Type"]?(u(t,"application/json"),l(e)):e}],transformResponse:[function(e){var t=this.transitional,n=t&&t.silentJSONParsing,r=t&&t.forcedJSONParsing,o=!n&&"json"===this.responseType;if(o||r&&i.isString(e)&&e.length)try{return JSON.parse(e)}catch(s){if(o){if("SyntaxError"===s.name)throw a(s,this,"E_JSON_PARSE");throw s}}return e}],timeout:0,xsrfCookieName:"XSRF-TOKEN",xsrfHeaderName:"X-XSRF-TOKEN",maxContentLength:-1,maxBodyLength:-1,validateStatus:function(e){return e>=200&&e<300}};f.headers={common:{Accept:"application/json, text/plain, */*"}},i.forEach(["delete","get","head"],function(e){f.headers[e]={}}),i.forEach(["post","put","patch"],function(e){f.headers[e]=i.merge(s)}),e.exports=f},91849:function(e){"use strict";e.exports=function(e,t){return function(){for(var n=Array(arguments.length),r=0;r=0)&&("set-cookie"===t?a[t]=(a[t]?a[t]:[]).concat([n]):a[t]=a[t]?a[t]+", "+n:n)}),a}},8713:function(e){"use strict";e.exports=function(e){return function(t){return e.apply(null,t)}}},54875:function(e,t,n){"use strict";var r=n(88593),i={};["object","boolean","number","function","string","symbol"].forEach(function(e,t){i[e]=function(n){return typeof n===e||"a"+(t<1?"n ":" ")+e}});var o={},a=r.version.split(".");function s(e,t){for(var n=t?t.split("."):a,r=e.split("."),i=0;i<3;i++){if(n[i]>r[i])return!0;if(n[i]0;){var o=r[i],a=t[o];if(a){var s=e[o],u=void 0===s||a(s,o,e);if(!0!==u)throw TypeError("option "+o+" must be "+u);continue}if(!0!==n)throw Error("Unknown option "+o)}}i.transitional=function(e,t,n){var i=t&&s(t);function a(e,t){return"[Axios v"+r.version+"] Transitional option '"+e+"'"+t+(n?". "+n:"")}return function(n,r,s){if(!1===e)throw Error(a(r," has been removed in "+t));return i&&!o[r]&&(o[r]=!0,console.warn(a(r," has been deprecated since v"+t+" and will be removed in the near future"))),!e||e(n,r,s)}},e.exports={isOlderVersion:s,assertOptions:u,validators:i}},64867:function(e,t,n){"use strict";var r=n(91849),i=Object.prototype.toString;function o(e){return"[object Array]"===i.call(e)}function a(e){return void 0===e}function s(e){return null!==e&&!a(e)&&null!==e.constructor&&!a(e.constructor)&&"function"==typeof e.constructor.isBuffer&&e.constructor.isBuffer(e)}function u(e){return"[object ArrayBuffer]"===i.call(e)}function c(e){return"undefined"!=typeof FormData&&e instanceof FormData}function l(e){var t;return"undefined"!=typeof ArrayBuffer&&ArrayBuffer.isView?ArrayBuffer.isView(e):e&&e.buffer&&e.buffer instanceof ArrayBuffer}function f(e){return"string"==typeof e}function d(e){return"number"==typeof e}function p(e){return null!==e&&"object"==typeof e}function h(e){if("[object Object]"!==i.call(e))return!1;var t=Object.getPrototypeOf(e);return null===t||t===Object.prototype}function m(e){return"[object Date]"===i.call(e)}function v(e){return"[object File]"===i.call(e)}function g(e){return"[object Blob]"===i.call(e)}function y(e){return"[object Function]"===i.call(e)}function b(e){return p(e)&&y(e.pipe)}function E(e){return"undefined"!=typeof URLSearchParams&&e instanceof URLSearchParams}function w(e){return e.trim?e.trim():e.replace(/^\s+|\s+$/g,"")}function x(){return("undefined"==typeof navigator||"ReactNative"!==navigator.product&&"NativeScript"!==navigator.product&&"NS"!==navigator.product)&&"undefined"!=typeof window&&"undefined"!=typeof document}function _(e,t){if(null!=e){if("object"!=typeof e&&(e=[e]),o(e))for(var n=0,r=e.length;n=0&&c>0){if(e===t)return[u,c];for(r=[],o=n.length;l>=0&&!s;)l==u?(r.push(l),u=n.indexOf(e,l+1)):1==r.length?s=[r.pop(),c]:((i=r.pop())=0?u:c;r.length&&(s=[o,a])}return s}e.exports=t,t.range=r},79742:function(e,t){"use strict";t.byteLength=c,t.toByteArray=f,t.fromByteArray=h;for(var n=[],r=[],i="undefined"!=typeof Uint8Array?Uint8Array:Array,o="ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789+/",a=0,s=o.length;a0)throw Error("Invalid string. Length must be a multiple of 4");var n=e.indexOf("=");-1===n&&(n=t);var r=n===t?0:4-n%4;return[n,r]}function c(e){var t=u(e),n=t[0],r=t[1];return(n+r)*3/4-r}function l(e,t,n){return(t+n)*3/4-n}function f(e){var t,n,o=u(e),a=o[0],s=o[1],c=new i(l(e,a,s)),f=0,d=s>0?a-4:a;for(n=0;n>16&255,c[f++]=t>>8&255,c[f++]=255&t;return 2===s&&(t=r[e.charCodeAt(n)]<<2|r[e.charCodeAt(n+1)]>>4,c[f++]=255&t),1===s&&(t=r[e.charCodeAt(n)]<<10|r[e.charCodeAt(n+1)]<<4|r[e.charCodeAt(n+2)]>>2,c[f++]=t>>8&255,c[f++]=255&t),c}function d(e){return n[e>>18&63]+n[e>>12&63]+n[e>>6&63]+n[63&e]}function p(e,t,n){for(var r,i=[],o=t;ou?u:s+a));return 1===i?o.push(n[(t=e[r-1])>>2]+n[t<<4&63]+"=="):2===i&&o.push(n[(t=(e[r-2]<<8)+e[r-1])>>10]+n[t>>4&63]+n[t<<2&63]+"="),o.join("")}r["-".charCodeAt(0)]=62,r["_".charCodeAt(0)]=63},51206:function(e){var t;t=function(){return function(e){var t={};function n(r){if(t[r])return t[r].exports;var i=t[r]={i:r,l:!1,exports:{}};return e[r].call(i.exports,i,i.exports,n),i.l=!0,i.exports}return n.m=e,n.c=t,n.d=function(e,t,r){n.o(e,t)||Object.defineProperty(e,t,{enumerable:!0,get:r})},n.r=function(e){"undefined"!=typeof Symbol&&Symbol.toStringTag&&Object.defineProperty(e,Symbol.toStringTag,{value:"Module"}),Object.defineProperty(e,"__esModule",{value:!0})},n.t=function(e,t){if(1&t&&(e=n(e)),8&t||4&t&&"object"==typeof e&&e&&e.__esModule)return e;var r=Object.create(null);if(n.r(r),Object.defineProperty(r,"default",{enumerable:!0,value:e}),2&t&&"string"!=typeof e)for(var i in e)n.d(r,i,(function(t){return e[t]}).bind(null,i));return r},n.n=function(e){var t=e&&e.__esModule?function(){return e.default}:function(){return e};return n.d(t,"a",t),t},n.o=function(e,t){return Object.prototype.hasOwnProperty.call(e,t)},n.p="",n(n.s=90)}({17:function(e,t,n){"use strict";t.__esModule=!0,t.default=void 0;var r=n(18),i=function(){function e(){}return e.getFirstMatch=function(e,t){var n=t.match(e);return n&&n.length>0&&n[1]||""},e.getSecondMatch=function(e,t){var n=t.match(e);return n&&n.length>1&&n[2]||""},e.matchAndReturnConst=function(e,t,n){if(e.test(t))return n},e.getWindowsVersionName=function(e){switch(e){case"NT":return"NT";case"XP":case"NT 5.1":return"XP";case"NT 5.0":return"2000";case"NT 5.2":return"2003";case"NT 6.0":return"Vista";case"NT 6.1":return"7";case"NT 6.2":return"8";case"NT 6.3":return"8.1";case"NT 10.0":return"10";default:return}},e.getMacOSVersionName=function(e){var t=e.split(".").splice(0,2).map(function(e){return parseInt(e,10)||0});if(t.push(0),10===t[0])switch(t[1]){case 5:return"Leopard";case 6:return"Snow Leopard";case 7:return"Lion";case 8:return"Mountain Lion";case 9:return"Mavericks";case 10:return"Yosemite";case 11:return"El Capitan";case 12:return"Sierra";case 13:return"High Sierra";case 14:return"Mojave";case 15:return"Catalina";default:return}},e.getAndroidVersionName=function(e){var t=e.split(".").splice(0,2).map(function(e){return parseInt(e,10)||0});if(t.push(0),!(1===t[0]&&t[1]<5))return 1===t[0]&&t[1]<6?"Cupcake":1===t[0]&&t[1]>=6?"Donut":2===t[0]&&t[1]<2?"Eclair":2===t[0]&&2===t[1]?"Froyo":2===t[0]&&t[1]>2?"Gingerbread":3===t[0]?"Honeycomb":4===t[0]&&t[1]<1?"Ice Cream Sandwich":4===t[0]&&t[1]<4?"Jelly Bean":4===t[0]&&t[1]>=4?"KitKat":5===t[0]?"Lollipop":6===t[0]?"Marshmallow":7===t[0]?"Nougat":8===t[0]?"Oreo":9===t[0]?"Pie":void 0},e.getVersionPrecision=function(e){return e.split(".").length},e.compareVersions=function(t,n,r){void 0===r&&(r=!1);var i=e.getVersionPrecision(t),o=e.getVersionPrecision(n),a=Math.max(i,o),s=0,u=e.map([t,n],function(t){var n=a-e.getVersionPrecision(t),r=t+Array(n+1).join(".0");return e.map(r.split("."),function(e){return Array(20-e.length).join("0")+e}).reverse()});for(r&&(s=a-Math.min(i,o)),a-=1;a>=s;){if(u[0][a]>u[1][a])return 1;if(u[0][a]===u[1][a]){if(a===s)return 0;a-=1}else if(u[0][a]1?i-1:0),a=1;a0){var a=Object.keys(n),u=s.default.find(a,function(e){return t.isOS(e)});if(u){var c=this.satisfies(n[u]);if(void 0!==c)return c}var l=s.default.find(a,function(e){return t.isPlatform(e)});if(l){var f=this.satisfies(n[l]);if(void 0!==f)return f}}if(o>0){var d=Object.keys(i),p=s.default.find(d,function(e){return t.isBrowser(e,!0)});if(void 0!==p)return this.compareVersion(i[p])}},t.isBrowser=function(e,t){void 0===t&&(t=!1);var n=this.getBrowserName().toLowerCase(),r=e.toLowerCase(),i=s.default.getBrowserTypeByAlias(r);return t&&i&&(r=i.toLowerCase()),r===n},t.compareVersion=function(e){var t=[0],n=e,r=!1,i=this.getBrowserVersion();if("string"==typeof i)return">"===e[0]||"<"===e[0]?(n=e.substr(1),"="===e[1]?(r=!0,n=e.substr(2)):t=[],">"===e[0]?t.push(1):t.push(-1)):"="===e[0]?n=e.substr(1):"~"===e[0]&&(r=!0,n=e.substr(1)),t.indexOf(s.default.compareVersions(i,n,r))>-1},t.isOS=function(e){return this.getOSName(!0)===String(e).toLowerCase()},t.isPlatform=function(e){return this.getPlatformType(!0)===String(e).toLowerCase()},t.isEngine=function(e){return this.getEngineName(!0)===String(e).toLowerCase()},t.is=function(e,t){return void 0===t&&(t=!1),this.isBrowser(e,t)||this.isOS(e)||this.isPlatform(e)},t.some=function(e){var t=this;return void 0===e&&(e=[]),e.some(function(e){return t.is(e)})},e}();t.default=c,e.exports=t.default},92:function(e,t,n){"use strict";t.__esModule=!0,t.default=void 0;var r,i=(r=n(17))&&r.__esModule?r:{default:r},o=/version\/(\d+(\.?_?\d+)+)/i,a=[{test:[/googlebot/i],describe:function(e){var t={name:"Googlebot"},n=i.default.getFirstMatch(/googlebot\/(\d+(\.\d+))/i,e)||i.default.getFirstMatch(o,e);return n&&(t.version=n),t}},{test:[/opera/i],describe:function(e){var t={name:"Opera"},n=i.default.getFirstMatch(o,e)||i.default.getFirstMatch(/(?:opera)[\s/](\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:[/opr\/|opios/i],describe:function(e){var t={name:"Opera"},n=i.default.getFirstMatch(/(?:opr|opios)[\s/](\S+)/i,e)||i.default.getFirstMatch(o,e);return n&&(t.version=n),t}},{test:[/SamsungBrowser/i],describe:function(e){var t={name:"Samsung Internet for Android"},n=i.default.getFirstMatch(o,e)||i.default.getFirstMatch(/(?:SamsungBrowser)[\s/](\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:[/Whale/i],describe:function(e){var t={name:"NAVER Whale Browser"},n=i.default.getFirstMatch(o,e)||i.default.getFirstMatch(/(?:whale)[\s/](\d+(?:\.\d+)+)/i,e);return n&&(t.version=n),t}},{test:[/MZBrowser/i],describe:function(e){var t={name:"MZ Browser"},n=i.default.getFirstMatch(/(?:MZBrowser)[\s/](\d+(?:\.\d+)+)/i,e)||i.default.getFirstMatch(o,e);return n&&(t.version=n),t}},{test:[/focus/i],describe:function(e){var t={name:"Focus"},n=i.default.getFirstMatch(/(?:focus)[\s/](\d+(?:\.\d+)+)/i,e)||i.default.getFirstMatch(o,e);return n&&(t.version=n),t}},{test:[/swing/i],describe:function(e){var t={name:"Swing"},n=i.default.getFirstMatch(/(?:swing)[\s/](\d+(?:\.\d+)+)/i,e)||i.default.getFirstMatch(o,e);return n&&(t.version=n),t}},{test:[/coast/i],describe:function(e){var t={name:"Opera Coast"},n=i.default.getFirstMatch(o,e)||i.default.getFirstMatch(/(?:coast)[\s/](\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:[/opt\/\d+(?:.?_?\d+)+/i],describe:function(e){var t={name:"Opera Touch"},n=i.default.getFirstMatch(/(?:opt)[\s/](\d+(\.?_?\d+)+)/i,e)||i.default.getFirstMatch(o,e);return n&&(t.version=n),t}},{test:[/yabrowser/i],describe:function(e){var t={name:"Yandex Browser"},n=i.default.getFirstMatch(/(?:yabrowser)[\s/](\d+(\.?_?\d+)+)/i,e)||i.default.getFirstMatch(o,e);return n&&(t.version=n),t}},{test:[/ucbrowser/i],describe:function(e){var t={name:"UC Browser"},n=i.default.getFirstMatch(o,e)||i.default.getFirstMatch(/(?:ucbrowser)[\s/](\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:[/Maxthon|mxios/i],describe:function(e){var t={name:"Maxthon"},n=i.default.getFirstMatch(o,e)||i.default.getFirstMatch(/(?:Maxthon|mxios)[\s/](\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:[/epiphany/i],describe:function(e){var t={name:"Epiphany"},n=i.default.getFirstMatch(o,e)||i.default.getFirstMatch(/(?:epiphany)[\s/](\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:[/puffin/i],describe:function(e){var t={name:"Puffin"},n=i.default.getFirstMatch(o,e)||i.default.getFirstMatch(/(?:puffin)[\s/](\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:[/sleipnir/i],describe:function(e){var t={name:"Sleipnir"},n=i.default.getFirstMatch(o,e)||i.default.getFirstMatch(/(?:sleipnir)[\s/](\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:[/k-meleon/i],describe:function(e){var t={name:"K-Meleon"},n=i.default.getFirstMatch(o,e)||i.default.getFirstMatch(/(?:k-meleon)[\s/](\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:[/micromessenger/i],describe:function(e){var t={name:"WeChat"},n=i.default.getFirstMatch(/(?:micromessenger)[\s/](\d+(\.?_?\d+)+)/i,e)||i.default.getFirstMatch(o,e);return n&&(t.version=n),t}},{test:[/qqbrowser/i],describe:function(e){var t={name:/qqbrowserlite/i.test(e)?"QQ Browser Lite":"QQ Browser"},n=i.default.getFirstMatch(/(?:qqbrowserlite|qqbrowser)[/](\d+(\.?_?\d+)+)/i,e)||i.default.getFirstMatch(o,e);return n&&(t.version=n),t}},{test:[/msie|trident/i],describe:function(e){var t={name:"Internet Explorer"},n=i.default.getFirstMatch(/(?:msie |rv:)(\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:[/\sedg\//i],describe:function(e){var t={name:"Microsoft Edge"},n=i.default.getFirstMatch(/\sedg\/(\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:[/edg([ea]|ios)/i],describe:function(e){var t={name:"Microsoft Edge"},n=i.default.getSecondMatch(/edg([ea]|ios)\/(\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:[/vivaldi/i],describe:function(e){var t={name:"Vivaldi"},n=i.default.getFirstMatch(/vivaldi\/(\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:[/seamonkey/i],describe:function(e){var t={name:"SeaMonkey"},n=i.default.getFirstMatch(/seamonkey\/(\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:[/sailfish/i],describe:function(e){var t={name:"Sailfish"},n=i.default.getFirstMatch(/sailfish\s?browser\/(\d+(\.\d+)?)/i,e);return n&&(t.version=n),t}},{test:[/silk/i],describe:function(e){var t={name:"Amazon Silk"},n=i.default.getFirstMatch(/silk\/(\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:[/phantom/i],describe:function(e){var t={name:"PhantomJS"},n=i.default.getFirstMatch(/phantomjs\/(\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:[/slimerjs/i],describe:function(e){var t={name:"SlimerJS"},n=i.default.getFirstMatch(/slimerjs\/(\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:[/blackberry|\bbb\d+/i,/rim\stablet/i],describe:function(e){var t={name:"BlackBerry"},n=i.default.getFirstMatch(o,e)||i.default.getFirstMatch(/blackberry[\d]+\/(\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:[/(web|hpw)[o0]s/i],describe:function(e){var t={name:"WebOS Browser"},n=i.default.getFirstMatch(o,e)||i.default.getFirstMatch(/w(?:eb)?[o0]sbrowser\/(\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:[/bada/i],describe:function(e){var t={name:"Bada"},n=i.default.getFirstMatch(/dolfin\/(\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:[/tizen/i],describe:function(e){var t={name:"Tizen"},n=i.default.getFirstMatch(/(?:tizen\s?)?browser\/(\d+(\.?_?\d+)+)/i,e)||i.default.getFirstMatch(o,e);return n&&(t.version=n),t}},{test:[/qupzilla/i],describe:function(e){var t={name:"QupZilla"},n=i.default.getFirstMatch(/(?:qupzilla)[\s/](\d+(\.?_?\d+)+)/i,e)||i.default.getFirstMatch(o,e);return n&&(t.version=n),t}},{test:[/firefox|iceweasel|fxios/i],describe:function(e){var t={name:"Firefox"},n=i.default.getFirstMatch(/(?:firefox|iceweasel|fxios)[\s/](\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:[/electron/i],describe:function(e){var t={name:"Electron"},n=i.default.getFirstMatch(/(?:electron)\/(\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:[/MiuiBrowser/i],describe:function(e){var t={name:"Miui"},n=i.default.getFirstMatch(/(?:MiuiBrowser)[\s/](\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:[/chromium/i],describe:function(e){var t={name:"Chromium"},n=i.default.getFirstMatch(/(?:chromium)[\s/](\d+(\.?_?\d+)+)/i,e)||i.default.getFirstMatch(o,e);return n&&(t.version=n),t}},{test:[/chrome|crios|crmo/i],describe:function(e){var t={name:"Chrome"},n=i.default.getFirstMatch(/(?:chrome|crios|crmo)\/(\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:[/GSA/i],describe:function(e){var t={name:"Google Search"},n=i.default.getFirstMatch(/(?:GSA)\/(\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:function(e){var t=!e.test(/like android/i),n=e.test(/android/i);return t&&n},describe:function(e){var t={name:"Android Browser"},n=i.default.getFirstMatch(o,e);return n&&(t.version=n),t}},{test:[/playstation 4/i],describe:function(e){var t={name:"PlayStation 4"},n=i.default.getFirstMatch(o,e);return n&&(t.version=n),t}},{test:[/safari|applewebkit/i],describe:function(e){var t={name:"Safari"},n=i.default.getFirstMatch(o,e);return n&&(t.version=n),t}},{test:[/.*/i],describe:function(e){var t=-1!==e.search("\\(")?/^(.*)\/(.*)[ \t]\((.*)/:/^(.*)\/(.*) /;return{name:i.default.getFirstMatch(t,e),version:i.default.getSecondMatch(t,e)}}}];t.default=a,e.exports=t.default},93:function(e,t,n){"use strict";t.__esModule=!0,t.default=void 0;var r,i=(r=n(17))&&r.__esModule?r:{default:r},o=n(18),a=[{test:[/Roku\/DVP/],describe:function(e){var t=i.default.getFirstMatch(/Roku\/DVP-(\d+\.\d+)/i,e);return{name:o.OS_MAP.Roku,version:t}}},{test:[/windows phone/i],describe:function(e){var t=i.default.getFirstMatch(/windows phone (?:os)?\s?(\d+(\.\d+)*)/i,e);return{name:o.OS_MAP.WindowsPhone,version:t}}},{test:[/windows /i],describe:function(e){var t=i.default.getFirstMatch(/Windows ((NT|XP)( \d\d?.\d)?)/i,e),n=i.default.getWindowsVersionName(t);return{name:o.OS_MAP.Windows,version:t,versionName:n}}},{test:[/Macintosh(.*?) FxiOS(.*?)\//],describe:function(e){var t={name:o.OS_MAP.iOS},n=i.default.getSecondMatch(/(Version\/)(\d[\d.]+)/,e);return n&&(t.version=n),t}},{test:[/macintosh/i],describe:function(e){var t=i.default.getFirstMatch(/mac os x (\d+(\.?_?\d+)+)/i,e).replace(/[_\s]/g,"."),n=i.default.getMacOSVersionName(t),r={name:o.OS_MAP.MacOS,version:t};return n&&(r.versionName=n),r}},{test:[/(ipod|iphone|ipad)/i],describe:function(e){var t=i.default.getFirstMatch(/os (\d+([_\s]\d+)*) like mac os x/i,e).replace(/[_\s]/g,".");return{name:o.OS_MAP.iOS,version:t}}},{test:function(e){var t=!e.test(/like android/i),n=e.test(/android/i);return t&&n},describe:function(e){var t=i.default.getFirstMatch(/android[\s/-](\d+(\.\d+)*)/i,e),n=i.default.getAndroidVersionName(t),r={name:o.OS_MAP.Android,version:t};return n&&(r.versionName=n),r}},{test:[/(web|hpw)[o0]s/i],describe:function(e){var t=i.default.getFirstMatch(/(?:web|hpw)[o0]s\/(\d+(\.\d+)*)/i,e),n={name:o.OS_MAP.WebOS};return t&&t.length&&(n.version=t),n}},{test:[/blackberry|\bbb\d+/i,/rim\stablet/i],describe:function(e){var t=i.default.getFirstMatch(/rim\stablet\sos\s(\d+(\.\d+)*)/i,e)||i.default.getFirstMatch(/blackberry\d+\/(\d+([_\s]\d+)*)/i,e)||i.default.getFirstMatch(/\bbb(\d+)/i,e);return{name:o.OS_MAP.BlackBerry,version:t}}},{test:[/bada/i],describe:function(e){var t=i.default.getFirstMatch(/bada\/(\d+(\.\d+)*)/i,e);return{name:o.OS_MAP.Bada,version:t}}},{test:[/tizen/i],describe:function(e){var t=i.default.getFirstMatch(/tizen[/\s](\d+(\.\d+)*)/i,e);return{name:o.OS_MAP.Tizen,version:t}}},{test:[/linux/i],describe:function(){return{name:o.OS_MAP.Linux}}},{test:[/CrOS/],describe:function(){return{name:o.OS_MAP.ChromeOS}}},{test:[/PlayStation 4/],describe:function(e){var t=i.default.getFirstMatch(/PlayStation 4[/\s](\d+(\.\d+)*)/i,e);return{name:o.OS_MAP.PlayStation4,version:t}}}];t.default=a,e.exports=t.default},94:function(e,t,n){"use strict";t.__esModule=!0,t.default=void 0;var r,i=(r=n(17))&&r.__esModule?r:{default:r},o=n(18),a=[{test:[/googlebot/i],describe:function(){return{type:"bot",vendor:"Google"}}},{test:[/huawei/i],describe:function(e){var t=i.default.getFirstMatch(/(can-l01)/i,e)&&"Nova",n={type:o.PLATFORMS_MAP.mobile,vendor:"Huawei"};return t&&(n.model=t),n}},{test:[/nexus\s*(?:7|8|9|10).*/i],describe:function(){return{type:o.PLATFORMS_MAP.tablet,vendor:"Nexus"}}},{test:[/ipad/i],describe:function(){return{type:o.PLATFORMS_MAP.tablet,vendor:"Apple",model:"iPad"}}},{test:[/Macintosh(.*?) FxiOS(.*?)\//],describe:function(){return{type:o.PLATFORMS_MAP.tablet,vendor:"Apple",model:"iPad"}}},{test:[/kftt build/i],describe:function(){return{type:o.PLATFORMS_MAP.tablet,vendor:"Amazon",model:"Kindle Fire HD 7"}}},{test:[/silk/i],describe:function(){return{type:o.PLATFORMS_MAP.tablet,vendor:"Amazon"}}},{test:[/tablet(?! pc)/i],describe:function(){return{type:o.PLATFORMS_MAP.tablet}}},{test:function(e){var t=e.test(/ipod|iphone/i),n=e.test(/like (ipod|iphone)/i);return t&&!n},describe:function(e){var t=i.default.getFirstMatch(/(ipod|iphone)/i,e);return{type:o.PLATFORMS_MAP.mobile,vendor:"Apple",model:t}}},{test:[/nexus\s*[0-6].*/i,/galaxy nexus/i],describe:function(){return{type:o.PLATFORMS_MAP.mobile,vendor:"Nexus"}}},{test:[/[^-]mobi/i],describe:function(){return{type:o.PLATFORMS_MAP.mobile}}},{test:function(e){return"blackberry"===e.getBrowserName(!0)},describe:function(){return{type:o.PLATFORMS_MAP.mobile,vendor:"BlackBerry"}}},{test:function(e){return"bada"===e.getBrowserName(!0)},describe:function(){return{type:o.PLATFORMS_MAP.mobile}}},{test:function(e){return"windows phone"===e.getBrowserName()},describe:function(){return{type:o.PLATFORMS_MAP.mobile,vendor:"Microsoft"}}},{test:function(e){var t=Number(String(e.getOSVersion()).split(".")[0]);return"android"===e.getOSName(!0)&&t>=3},describe:function(){return{type:o.PLATFORMS_MAP.tablet}}},{test:function(e){return"android"===e.getOSName(!0)},describe:function(){return{type:o.PLATFORMS_MAP.mobile}}},{test:function(e){return"macos"===e.getOSName(!0)},describe:function(){return{type:o.PLATFORMS_MAP.desktop,vendor:"Apple"}}},{test:function(e){return"windows"===e.getOSName(!0)},describe:function(){return{type:o.PLATFORMS_MAP.desktop}}},{test:function(e){return"linux"===e.getOSName(!0)},describe:function(){return{type:o.PLATFORMS_MAP.desktop}}},{test:function(e){return"playstation 4"===e.getOSName(!0)},describe:function(){return{type:o.PLATFORMS_MAP.tv}}},{test:function(e){return"roku"===e.getOSName(!0)},describe:function(){return{type:o.PLATFORMS_MAP.tv}}}];t.default=a,e.exports=t.default},95:function(e,t,n){"use strict";t.__esModule=!0,t.default=void 0;var r,i=(r=n(17))&&r.__esModule?r:{default:r},o=n(18),a=[{test:function(e){return"microsoft edge"===e.getBrowserName(!0)},describe:function(e){if(/\sedg\//i.test(e))return{name:o.ENGINE_MAP.Blink};var t=i.default.getFirstMatch(/edge\/(\d+(\.?_?\d+)+)/i,e);return{name:o.ENGINE_MAP.EdgeHTML,version:t}}},{test:[/trident/i],describe:function(e){var t={name:o.ENGINE_MAP.Trident},n=i.default.getFirstMatch(/trident\/(\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:function(e){return e.test(/presto/i)},describe:function(e){var t={name:o.ENGINE_MAP.Presto},n=i.default.getFirstMatch(/presto\/(\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:function(e){var t=e.test(/gecko/i),n=e.test(/like gecko/i);return t&&!n},describe:function(e){var t={name:o.ENGINE_MAP.Gecko},n=i.default.getFirstMatch(/gecko\/(\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}},{test:[/(apple)?webkit\/537\.36/i],describe:function(){return{name:o.ENGINE_MAP.Blink}}},{test:[/(apple)?webkit/i],describe:function(e){var t={name:o.ENGINE_MAP.WebKit},n=i.default.getFirstMatch(/webkit\/(\d+(\.?_?\d+)+)/i,e);return n&&(t.version=n),t}}];t.default=a,e.exports=t.default}})},e.exports=t()},48764:function(e,t,n){"use strict";/*!
+ * The buffer module from node.js, for the browser.
+ *
+ * @author Feross Aboukhadijeh
+ * @license MIT
+ */ var r=n(79742),i=n(80645),o="function"==typeof Symbol&&"function"==typeof Symbol.for?Symbol.for("nodejs.util.inspect.custom"):null;t.lW=c,t.h2=50;var a=2147483647;function s(){try{var e=new Uint8Array(1),t={foo:function(){return 42}};return Object.setPrototypeOf(t,Uint8Array.prototype),Object.setPrototypeOf(e,t),42===e.foo()}catch(n){return!1}}function u(e){if(e>a)throw RangeError('The value "'+e+'" is invalid for option "size"');var t=new Uint8Array(e);return Object.setPrototypeOf(t,c.prototype),t}function c(e,t,n){if("number"==typeof e){if("string"==typeof t)throw TypeError('The "string" argument must be of type string. Received type number');return p(e)}return l(e,t,n)}function l(e,t,n){if("string"==typeof e)return h(e,t);if(ArrayBuffer.isView(e))return v(e);if(null==e)throw TypeError("The first argument must be one of type string, Buffer, ArrayBuffer, Array, or Array-like Object. Received type "+typeof e);if(Y(e,ArrayBuffer)||e&&Y(e.buffer,ArrayBuffer)||"undefined"!=typeof SharedArrayBuffer&&(Y(e,SharedArrayBuffer)||e&&Y(e.buffer,SharedArrayBuffer)))return g(e,t,n);if("number"==typeof e)throw TypeError('The "value" argument must not be of type number. Received type number');var r=e.valueOf&&e.valueOf();if(null!=r&&r!==e)return c.from(r,t,n);var i=y(e);if(i)return i;if("undefined"!=typeof Symbol&&null!=Symbol.toPrimitive&&"function"==typeof e[Symbol.toPrimitive])return c.from(e[Symbol.toPrimitive]("string"),t,n);throw TypeError("The first argument must be one of type string, Buffer, ArrayBuffer, Array, or Array-like Object. Received type "+typeof e)}function f(e){if("number"!=typeof e)throw TypeError('"size" argument must be of type number');if(e<0)throw RangeError('The value "'+e+'" is invalid for option "size"')}function d(e,t,n){return(f(e),e<=0)?u(e):void 0!==t?"string"==typeof n?u(e).fill(t,n):u(e).fill(t):u(e)}function p(e){return f(e),u(e<0?0:0|b(e))}function h(e,t){if(("string"!=typeof t||""===t)&&(t="utf8"),!c.isEncoding(t))throw TypeError("Unknown encoding: "+t);var n=0|E(e,t),r=u(n),i=r.write(e,t);return i!==n&&(r=r.slice(0,i)),r}function m(e){for(var t=e.length<0?0:0|b(e.length),n=u(t),r=0;r=a)throw RangeError("Attempt to allocate Buffer larger than maximum size: 0x"+a.toString(16)+" bytes");return 0|e}function E(e,t){if(c.isBuffer(e))return e.length;if(ArrayBuffer.isView(e)||Y(e,ArrayBuffer))return e.byteLength;if("string"!=typeof e)throw TypeError('The "string" argument must be one of type string, Buffer, or ArrayBuffer. Received type '+typeof e);var n=e.length,r=arguments.length>2&&!0===arguments[2];if(!r&&0===n)return 0;for(var i=!1;;)switch(t){case"ascii":case"latin1":case"binary":return n;case"utf8":case"utf-8":return W(e).length;case"ucs2":case"ucs-2":case"utf16le":case"utf-16le":return 2*n;case"hex":return n>>>1;case"base64":return q(e).length;default:if(i)return r?-1:W(e).length;t=(""+t).toLowerCase(),i=!0}}function w(e,t,n){var r=!1;if((void 0===t||t<0)&&(t=0),t>this.length||((void 0===n||n>this.length)&&(n=this.length),n<=0||(n>>>=0)<=(t>>>=0)))return"";for(e||(e="utf8");;)switch(e){case"hex":return R(this,t,n);case"utf8":case"utf-8":return N(this,t,n);case"ascii":return M(this,t,n);case"latin1":case"binary":return F(this,t,n);case"base64":return T(this,t,n);case"ucs2":case"ucs-2":case"utf16le":case"utf-16le":return L(this,t,n);default:if(r)throw TypeError("Unknown encoding: "+e);e=(e+"").toLowerCase(),r=!0}}function x(e,t,n){var r=e[t];e[t]=e[n],e[n]=r}function _(e,t,n,r,i){if(0===e.length)return -1;if("string"==typeof n?(r=n,n=0):n>2147483647?n=2147483647:n<-2147483648&&(n=-2147483648),X(n=+n)&&(n=i?0:e.length-1),n<0&&(n=e.length+n),n>=e.length){if(i)return -1;n=e.length-1}else if(n<0){if(!i)return -1;n=0}if("string"==typeof t&&(t=c.from(t,r)),c.isBuffer(t))return 0===t.length?-1:S(e,t,n,r,i);if("number"==typeof t)return(t&=255,"function"==typeof Uint8Array.prototype.indexOf)?i?Uint8Array.prototype.indexOf.call(e,t,n):Uint8Array.prototype.lastIndexOf.call(e,t,n):S(e,[t],n,r,i);throw TypeError("val must be string, number or Buffer")}function S(e,t,n,r,i){var o,a=1,s=e.length,u=t.length;if(void 0!==r&&("ucs2"===(r=String(r).toLowerCase())||"ucs-2"===r||"utf16le"===r||"utf-16le"===r)){if(e.length<2||t.length<2)return -1;a=2,s/=2,u/=2,n/=2}function c(e,t){return 1===a?e[t]:e.readUInt16BE(t*a)}if(i){var l=-1;for(o=n;os&&(n=s-u),o=n;o>=0;o--){for(var f=!0,d=0;di&&(r=i):r=i;var o=t.length;r>o/2&&(r=o/2);for(var a=0;a239?4:c>223?3:c>191?2:1;if(i+f<=n)switch(f){case 1:c<128&&(l=c);break;case 2:(192&(o=e[i+1]))==128&&(u=(31&c)<<6|63&o)>127&&(l=u);break;case 3:o=e[i+1],a=e[i+2],(192&o)==128&&(192&a)==128&&(u=(15&c)<<12|(63&o)<<6|63&a)>2047&&(u<55296||u>57343)&&(l=u);break;case 4:o=e[i+1],a=e[i+2],s=e[i+3],(192&o)==128&&(192&a)==128&&(192&s)==128&&(u=(15&c)<<18|(63&o)<<12|(63&a)<<6|63&s)>65535&&u<1114112&&(l=u)}null===l?(l=65533,f=1):l>65535&&(l-=65536,r.push(l>>>10&1023|55296),l=56320|1023&l),r.push(l),i+=f}return I(r)}c.TYPED_ARRAY_SUPPORT=s(),c.TYPED_ARRAY_SUPPORT||"undefined"==typeof console||"function"!=typeof console.error||console.error("This browser lacks typed array (Uint8Array) support which is required by `buffer` v5.x. Use `buffer` v4.x if you require old browser support."),Object.defineProperty(c.prototype,"parent",{enumerable:!0,get:function(){if(c.isBuffer(this))return this.buffer}}),Object.defineProperty(c.prototype,"offset",{enumerable:!0,get:function(){if(c.isBuffer(this))return this.byteOffset}}),c.poolSize=8192,c.from=function(e,t,n){return l(e,t,n)},Object.setPrototypeOf(c.prototype,Uint8Array.prototype),Object.setPrototypeOf(c,Uint8Array),c.alloc=function(e,t,n){return d(e,t,n)},c.allocUnsafe=function(e){return p(e)},c.allocUnsafeSlow=function(e){return p(e)},c.isBuffer=function(e){return null!=e&&!0===e._isBuffer&&e!==c.prototype},c.compare=function(e,t){if(Y(e,Uint8Array)&&(e=c.from(e,e.offset,e.byteLength)),Y(t,Uint8Array)&&(t=c.from(t,t.offset,t.byteLength)),!c.isBuffer(e)||!c.isBuffer(t))throw TypeError('The "buf1", "buf2" arguments must be one of type Buffer or Uint8Array');if(e===t)return 0;for(var n=e.length,r=t.length,i=0,o=Math.min(n,r);ir.length?c.from(o).copy(r,i):Uint8Array.prototype.set.call(r,o,i);else if(c.isBuffer(o))o.copy(r,i);else throw TypeError('"list" argument must be an Array of Buffers');i+=o.length}return r},c.byteLength=E,c.prototype._isBuffer=!0,c.prototype.swap16=function(){var e=this.length;if(e%2!=0)throw RangeError("Buffer size must be a multiple of 16-bits");for(var t=0;tn&&(e+=" ... "),""},o&&(c.prototype[o]=c.prototype.inspect),c.prototype.compare=function(e,t,n,r,i){if(Y(e,Uint8Array)&&(e=c.from(e,e.offset,e.byteLength)),!c.isBuffer(e))throw TypeError('The "target" argument must be one of type Buffer or Uint8Array. Received type '+typeof e);if(void 0===t&&(t=0),void 0===n&&(n=e?e.length:0),void 0===r&&(r=0),void 0===i&&(i=this.length),t<0||n>e.length||r<0||i>this.length)throw RangeError("out of range index");if(r>=i&&t>=n)return 0;if(r>=i)return -1;if(t>=n)return 1;if(t>>>=0,n>>>=0,r>>>=0,i>>>=0,this===e)return 0;for(var o=i-r,a=n-t,s=Math.min(o,a),u=this.slice(r,i),l=e.slice(t,n),f=0;f>>=0,isFinite(n)?(n>>>=0,void 0===r&&(r="utf8")):(r=n,n=void 0);else throw Error("Buffer.write(string, encoding, offset[, length]) is no longer supported");var i=this.length-t;if((void 0===n||n>i)&&(n=i),e.length>0&&(n<0||t<0)||t>this.length)throw RangeError("Attempt to write outside buffer bounds");r||(r="utf8");for(var o=!1;;)switch(r){case"hex":return C(this,e,t,n);case"utf8":case"utf-8":return A(this,e,t,n);case"ascii":case"latin1":case"binary":return D(this,e,t,n);case"base64":return O(this,e,t,n);case"ucs2":case"ucs-2":case"utf16le":case"utf-16le":return k(this,e,t,n);default:if(o)throw TypeError("Unknown encoding: "+r);r=(""+r).toLowerCase(),o=!0}},c.prototype.toJSON=function(){return{type:"Buffer",data:Array.prototype.slice.call(this._arr||this,0)}};var P=4096;function I(e){var t=e.length;if(t<=P)return String.fromCharCode.apply(String,e);for(var n="",r=0;rr)&&(n=r);for(var i="",o=t;on)throw RangeError("Trying to access beyond buffer length")}function B(e,t,n,r,i,o){if(!c.isBuffer(e))throw TypeError('"buffer" argument must be a Buffer instance');if(t>i||te.length)throw RangeError("Index out of range")}function U(e,t,n,r,i,o){if(n+r>e.length||n<0)throw RangeError("Index out of range")}function Z(e,t,n,r,o){return t=+t,n>>>=0,o||U(e,t,n,4,34028234663852886e22,-34028234663852886e22),i.write(e,t,n,r,23,4),n+4}function V(e,t,n,r,o){return t=+t,n>>>=0,o||U(e,t,n,8,17976931348623157e292,-17976931348623157e292),i.write(e,t,n,r,52,8),n+8}c.prototype.slice=function(e,t){var n=this.length;e=~~e,t=void 0===t?n:~~t,e<0?(e+=n)<0&&(e=0):e>n&&(e=n),t<0?(t+=n)<0&&(t=0):t>n&&(t=n),t>>=0,t>>>=0,n||j(e,t,this.length);for(var r=this[e],i=1,o=0;++o>>=0,t>>>=0,n||j(e,t,this.length);for(var r=this[e+--t],i=1;t>0&&(i*=256);)r+=this[e+--t]*i;return r},c.prototype.readUint8=c.prototype.readUInt8=function(e,t){return e>>>=0,t||j(e,1,this.length),this[e]},c.prototype.readUint16LE=c.prototype.readUInt16LE=function(e,t){return e>>>=0,t||j(e,2,this.length),this[e]|this[e+1]<<8},c.prototype.readUint16BE=c.prototype.readUInt16BE=function(e,t){return e>>>=0,t||j(e,2,this.length),this[e]<<8|this[e+1]},c.prototype.readUint32LE=c.prototype.readUInt32LE=function(e,t){return e>>>=0,t||j(e,4,this.length),(this[e]|this[e+1]<<8|this[e+2]<<16)+16777216*this[e+3]},c.prototype.readUint32BE=c.prototype.readUInt32BE=function(e,t){return e>>>=0,t||j(e,4,this.length),16777216*this[e]+(this[e+1]<<16|this[e+2]<<8|this[e+3])},c.prototype.readIntLE=function(e,t,n){e>>>=0,t>>>=0,n||j(e,t,this.length);for(var r=this[e],i=1,o=0;++o=(i*=128)&&(r-=Math.pow(2,8*t)),r},c.prototype.readIntBE=function(e,t,n){e>>>=0,t>>>=0,n||j(e,t,this.length);for(var r=t,i=1,o=this[e+--r];r>0&&(i*=256);)o+=this[e+--r]*i;return o>=(i*=128)&&(o-=Math.pow(2,8*t)),o},c.prototype.readInt8=function(e,t){return(e>>>=0,t||j(e,1,this.length),128&this[e])?-((255-this[e]+1)*1):this[e]},c.prototype.readInt16LE=function(e,t){e>>>=0,t||j(e,2,this.length);var n=this[e]|this[e+1]<<8;return 32768&n?4294901760|n:n},c.prototype.readInt16BE=function(e,t){e>>>=0,t||j(e,2,this.length);var n=this[e+1]|this[e]<<8;return 32768&n?4294901760|n:n},c.prototype.readInt32LE=function(e,t){return e>>>=0,t||j(e,4,this.length),this[e]|this[e+1]<<8|this[e+2]<<16|this[e+3]<<24},c.prototype.readInt32BE=function(e,t){return e>>>=0,t||j(e,4,this.length),this[e]<<24|this[e+1]<<16|this[e+2]<<8|this[e+3]},c.prototype.readFloatLE=function(e,t){return e>>>=0,t||j(e,4,this.length),i.read(this,e,!0,23,4)},c.prototype.readFloatBE=function(e,t){return e>>>=0,t||j(e,4,this.length),i.read(this,e,!1,23,4)},c.prototype.readDoubleLE=function(e,t){return e>>>=0,t||j(e,8,this.length),i.read(this,e,!0,52,8)},c.prototype.readDoubleBE=function(e,t){return e>>>=0,t||j(e,8,this.length),i.read(this,e,!1,52,8)},c.prototype.writeUintLE=c.prototype.writeUIntLE=function(e,t,n,r){if(e=+e,t>>>=0,n>>>=0,!r){var i=Math.pow(2,8*n)-1;B(this,e,t,n,i,0)}var o=1,a=0;for(this[t]=255&e;++a>>=0,n>>>=0,!r){var i=Math.pow(2,8*n)-1;B(this,e,t,n,i,0)}var o=n-1,a=1;for(this[t+o]=255&e;--o>=0&&(a*=256);)this[t+o]=e/a&255;return t+n},c.prototype.writeUint8=c.prototype.writeUInt8=function(e,t,n){return e=+e,t>>>=0,n||B(this,e,t,1,255,0),this[t]=255&e,t+1},c.prototype.writeUint16LE=c.prototype.writeUInt16LE=function(e,t,n){return e=+e,t>>>=0,n||B(this,e,t,2,65535,0),this[t]=255&e,this[t+1]=e>>>8,t+2},c.prototype.writeUint16BE=c.prototype.writeUInt16BE=function(e,t,n){return e=+e,t>>>=0,n||B(this,e,t,2,65535,0),this[t]=e>>>8,this[t+1]=255&e,t+2},c.prototype.writeUint32LE=c.prototype.writeUInt32LE=function(e,t,n){return e=+e,t>>>=0,n||B(this,e,t,4,4294967295,0),this[t+3]=e>>>24,this[t+2]=e>>>16,this[t+1]=e>>>8,this[t]=255&e,t+4},c.prototype.writeUint32BE=c.prototype.writeUInt32BE=function(e,t,n){return e=+e,t>>>=0,n||B(this,e,t,4,4294967295,0),this[t]=e>>>24,this[t+1]=e>>>16,this[t+2]=e>>>8,this[t+3]=255&e,t+4},c.prototype.writeIntLE=function(e,t,n,r){if(e=+e,t>>>=0,!r){var i=Math.pow(2,8*n-1);B(this,e,t,n,i-1,-i)}var o=0,a=1,s=0;for(this[t]=255&e;++o>0)-s&255;return t+n},c.prototype.writeIntBE=function(e,t,n,r){if(e=+e,t>>>=0,!r){var i=Math.pow(2,8*n-1);B(this,e,t,n,i-1,-i)}var o=n-1,a=1,s=0;for(this[t+o]=255&e;--o>=0&&(a*=256);)e<0&&0===s&&0!==this[t+o+1]&&(s=1),this[t+o]=(e/a>>0)-s&255;return t+n},c.prototype.writeInt8=function(e,t,n){return e=+e,t>>>=0,n||B(this,e,t,1,127,-128),e<0&&(e=255+e+1),this[t]=255&e,t+1},c.prototype.writeInt16LE=function(e,t,n){return e=+e,t>>>=0,n||B(this,e,t,2,32767,-32768),this[t]=255&e,this[t+1]=e>>>8,t+2},c.prototype.writeInt16BE=function(e,t,n){return e=+e,t>>>=0,n||B(this,e,t,2,32767,-32768),this[t]=e>>>8,this[t+1]=255&e,t+2},c.prototype.writeInt32LE=function(e,t,n){return e=+e,t>>>=0,n||B(this,e,t,4,2147483647,-2147483648),this[t]=255&e,this[t+1]=e>>>8,this[t+2]=e>>>16,this[t+3]=e>>>24,t+4},c.prototype.writeInt32BE=function(e,t,n){return e=+e,t>>>=0,n||B(this,e,t,4,2147483647,-2147483648),e<0&&(e=4294967295+e+1),this[t]=e>>>24,this[t+1]=e>>>16,this[t+2]=e>>>8,this[t+3]=255&e,t+4},c.prototype.writeFloatLE=function(e,t,n){return Z(this,e,t,!0,n)},c.prototype.writeFloatBE=function(e,t,n){return Z(this,e,t,!1,n)},c.prototype.writeDoubleLE=function(e,t,n){return V(this,e,t,!0,n)},c.prototype.writeDoubleBE=function(e,t,n){return V(this,e,t,!1,n)},c.prototype.copy=function(e,t,n,r){if(!c.isBuffer(e))throw TypeError("argument should be a Buffer");if(n||(n=0),r||0===r||(r=this.length),t>=e.length&&(t=e.length),t||(t=0),r>0&&r=this.length)throw RangeError("Index out of range");if(r<0)throw RangeError("sourceEnd out of bounds");r>this.length&&(r=this.length),e.length-t>>=0,n=void 0===n?this.length:n>>>0,e||(e=0),"number"==typeof e)for(i=t;i55295&&n<57344){if(!i){if(n>56319||a+1===r){(t-=3)>-1&&o.push(239,191,189);continue}i=n;continue}if(n<56320){(t-=3)>-1&&o.push(239,191,189),i=n;continue}n=(i-55296<<10|n-56320)+65536}else i&&(t-=3)>-1&&o.push(239,191,189);if(i=null,n<128){if((t-=1)<0)break;o.push(n)}else if(n<2048){if((t-=2)<0)break;o.push(n>>6|192,63&n|128)}else if(n<65536){if((t-=3)<0)break;o.push(n>>12|224,n>>6&63|128,63&n|128)}else if(n<1114112){if((t-=4)<0)break;o.push(n>>18|240,n>>12&63|128,n>>6&63|128,63&n|128)}else throw Error("Invalid code point")}return o}function $(e){for(var t=[],n=0;n>8,o.push(i=n%256),o.push(r);return o}function q(e){return r.toByteArray(H(e))}function K(e,t,n,r){for(var i=0;i=t.length)&&!(i>=e.length);++i)t[i+n]=e[i];return i}function Y(e,t){return e instanceof t||null!=e&&null!=e.constructor&&null!=e.constructor.name&&e.constructor.name===t.name}function X(e){return e!=e}var J=function(){for(var e="0123456789abcdef",t=Array(256),n=0;n<16;++n)for(var r=16*n,i=0;i<16;++i)t[r+i]=e[n]+e[i];return t}()},21924:function(e,t,n){"use strict";var r=n(40210),i=n(55559),o=i(r("String.prototype.indexOf"));e.exports=function(e,t){var n=r(e,!!t);return"function"==typeof n&&o(e,".prototype.")>-1?i(n):n}},55559:function(e,t,n){"use strict";var r=n(58612),i=n(40210),o=i("%Function.prototype.apply%"),a=i("%Function.prototype.call%"),s=i("%Reflect.apply%",!0)||r.call(a,o),u=i("%Object.getOwnPropertyDescriptor%",!0),c=i("%Object.defineProperty%",!0),l=i("%Math.max%");if(c)try{c({},"a",{value:1})}catch(f){c=null}e.exports=function(e){var t=s(r,a,arguments);return u&&c&&u(t,"length").configurable&&c(t,"length",{value:1+l(0,e.length-(arguments.length-1))}),t};var d=function(){return s(r,o,arguments)};c?c(e.exports,"apply",{value:d}):e.exports.apply=d},94184:function(e,t){var n; /*!
+ Copyright (c) 2018 Jed Watson.
+ Licensed under the MIT License (MIT), see
+ http://jedwatson.github.io/classnames
+*/ !function(){"use strict";var r={}.hasOwnProperty;function i(){for(var e=[],t=0;t=0;--i){var o=this.leading[i];t.end.offset>=o.start&&(n.unshift(o.comment),this.leading.splice(i,1),this.trailing.splice(i,1))}n.length&&(e.innerComments=n)}},e.prototype.findTrailingComments=function(e){var t=[];if(this.trailing.length>0){for(var n=this.trailing.length-1;n>=0;--n){var r=this.trailing[n];r.start>=e.end.offset&&t.unshift(r.comment)}return this.trailing.length=0,t}var i=this.stack[this.stack.length-1];if(i&&i.node.trailingComments){var o=i.node.trailingComments[0];o&&o.range[0]>=e.end.offset&&(t=i.node.trailingComments,delete i.node.trailingComments)}return t},e.prototype.findLeadingComments=function(e){for(var t,n=[];this.stack.length>0;){var r=this.stack[this.stack.length-1];if(r&&r.start>=e.start.offset)t=r.node,this.stack.pop();else break}if(t){for(var i=t.leadingComments?t.leadingComments.length:0,o=i-1;o>=0;--o){var a=t.leadingComments[o];a.range[1]<=e.start.offset&&(n.unshift(a),t.leadingComments.splice(o,1))}return t.leadingComments&&0===t.leadingComments.length&&delete t.leadingComments,n}for(var o=this.leading.length-1;o>=0;--o){var r=this.leading[o];r.start<=e.start.offset&&(n.unshift(r.comment),this.leading.splice(o,1))}return n},e.prototype.visitNode=function(e,t){if(e.type!==r.Syntax.Program||!(e.body.length>0)){this.insertInnerComments(e,t);var n=this.findTrailingComments(t),i=this.findLeadingComments(t);i.length>0&&(e.leadingComments=i),n.length>0&&(e.trailingComments=n),this.stack.push({node:e,start:t.start.offset})}},e.prototype.visitComment=function(e,t){var n="L"===e.type[0]?"Line":"Block",r={type:n,value:e.value};if(e.range&&(r.range=e.range),e.loc&&(r.loc=e.loc),this.comments.push(r),this.attach){var i={comment:{type:n,value:e.value,range:[t.start.offset,t.end.offset]},start:t.start.offset};e.loc&&(i.comment.loc=e.loc),e.type=n,this.leading.push(i),this.trailing.push(i)}},e.prototype.visit=function(e,t){"LineComment"===e.type?this.visitComment(e,t):"BlockComment"===e.type?this.visitComment(e,t):this.attach&&this.visitNode(e,t)},e}();t.CommentHandler=i},function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.Syntax={AssignmentExpression:"AssignmentExpression",AssignmentPattern:"AssignmentPattern",ArrayExpression:"ArrayExpression",ArrayPattern:"ArrayPattern",ArrowFunctionExpression:"ArrowFunctionExpression",AwaitExpression:"AwaitExpression",BlockStatement:"BlockStatement",BinaryExpression:"BinaryExpression",BreakStatement:"BreakStatement",CallExpression:"CallExpression",CatchClause:"CatchClause",ClassBody:"ClassBody",ClassDeclaration:"ClassDeclaration",ClassExpression:"ClassExpression",ConditionalExpression:"ConditionalExpression",ContinueStatement:"ContinueStatement",DoWhileStatement:"DoWhileStatement",DebuggerStatement:"DebuggerStatement",EmptyStatement:"EmptyStatement",ExportAllDeclaration:"ExportAllDeclaration",ExportDefaultDeclaration:"ExportDefaultDeclaration",ExportNamedDeclaration:"ExportNamedDeclaration",ExportSpecifier:"ExportSpecifier",ExpressionStatement:"ExpressionStatement",ForStatement:"ForStatement",ForOfStatement:"ForOfStatement",ForInStatement:"ForInStatement",FunctionDeclaration:"FunctionDeclaration",FunctionExpression:"FunctionExpression",Identifier:"Identifier",IfStatement:"IfStatement",ImportDeclaration:"ImportDeclaration",ImportDefaultSpecifier:"ImportDefaultSpecifier",ImportNamespaceSpecifier:"ImportNamespaceSpecifier",ImportSpecifier:"ImportSpecifier",Literal:"Literal",LabeledStatement:"LabeledStatement",LogicalExpression:"LogicalExpression",MemberExpression:"MemberExpression",MetaProperty:"MetaProperty",MethodDefinition:"MethodDefinition",NewExpression:"NewExpression",ObjectExpression:"ObjectExpression",ObjectPattern:"ObjectPattern",Program:"Program",Property:"Property",RestElement:"RestElement",ReturnStatement:"ReturnStatement",SequenceExpression:"SequenceExpression",SpreadElement:"SpreadElement",Super:"Super",SwitchCase:"SwitchCase",SwitchStatement:"SwitchStatement",TaggedTemplateExpression:"TaggedTemplateExpression",TemplateElement:"TemplateElement",TemplateLiteral:"TemplateLiteral",ThisExpression:"ThisExpression",ThrowStatement:"ThrowStatement",TryStatement:"TryStatement",UnaryExpression:"UnaryExpression",UpdateExpression:"UpdateExpression",VariableDeclaration:"VariableDeclaration",VariableDeclarator:"VariableDeclarator",WhileStatement:"WhileStatement",WithStatement:"WithStatement",YieldExpression:"YieldExpression"}},function(e,t,n){"use strict";var r,i=this&&this.__extends||(r=Object.setPrototypeOf||({__proto__:[]})instanceof Array&&function(e,t){e.__proto__=t}||function(e,t){for(var n in t)t.hasOwnProperty(n)&&(e[n]=t[n])},function(e,t){function n(){this.constructor=e}r(e,t),e.prototype=null===t?Object.create(t):(n.prototype=t.prototype,new n)});Object.defineProperty(t,"__esModule",{value:!0});var o=n(4),a=n(5),s=n(6),u=n(7),c=n(8),l=n(13),f=n(14);function d(e){switch(e.type){case s.JSXSyntax.JSXIdentifier:t=e.name;break;case s.JSXSyntax.JSXNamespacedName:var t,n=e;t=d(n.namespace)+":"+d(n.name);break;case s.JSXSyntax.JSXMemberExpression:var r=e;t=d(r.object)+"."+d(r.property)}return t}l.TokenName[100]="JSXIdentifier",l.TokenName[101]="JSXText";var p=function(e){function t(t,n,r){return e.call(this,t,n,r)||this}return i(t,e),t.prototype.parsePrimaryExpression=function(){return this.match("<")?this.parseJSXRoot():e.prototype.parsePrimaryExpression.call(this)},t.prototype.startJSX=function(){this.scanner.index=this.startMarker.index,this.scanner.lineNumber=this.startMarker.line,this.scanner.lineStart=this.startMarker.index-this.startMarker.column},t.prototype.finishJSX=function(){this.nextToken()},t.prototype.reenterJSX=function(){this.startJSX(),this.expectJSX("}"),this.config.tokens&&this.tokens.pop()},t.prototype.createJSXNode=function(){return this.collectComments(),{index:this.scanner.index,line:this.scanner.lineNumber,column:this.scanner.index-this.scanner.lineStart}},t.prototype.createJSXChildNode=function(){return{index:this.scanner.index,line:this.scanner.lineNumber,column:this.scanner.index-this.scanner.lineStart}},t.prototype.scanXHTMLEntity=function(e){for(var t="&",n=!0,r=!1,i=!1,a=!1;!this.scanner.eof()&&n&&!r;){var s=this.scanner.source[this.scanner.index];if(s===e)break;if(r=";"===s,t+=s,++this.scanner.index,!r)switch(t.length){case 2:i="#"===s;break;case 3:i&&(n=(a="x"===s)||o.Character.isDecimalDigit(s.charCodeAt(0)),i=i&&!a);break;default:n=(n=n&&!(i&&!o.Character.isDecimalDigit(s.charCodeAt(0))))&&!(a&&!o.Character.isHexDigit(s.charCodeAt(0)))}}if(n&&r&&t.length>2){var u=t.substr(1,t.length-2);i&&u.length>1?t=String.fromCharCode(parseInt(u.substr(1),10)):a&&u.length>2?t=String.fromCharCode(parseInt("0"+u.substr(1),16)):i||a||!f.XHTMLEntities[u]||(t=f.XHTMLEntities[u])}return t},t.prototype.lexJSX=function(){var e=this.scanner.source.charCodeAt(this.scanner.index);if(60===e||62===e||47===e||58===e||61===e||123===e||125===e){var t=this.scanner.source[this.scanner.index++];return{type:7,value:t,lineNumber:this.scanner.lineNumber,lineStart:this.scanner.lineStart,start:this.scanner.index-1,end:this.scanner.index}}if(34===e||39===e){for(var n=this.scanner.index,r=this.scanner.source[this.scanner.index++],i="";!this.scanner.eof();){var a=this.scanner.source[this.scanner.index++];if(a===r)break;"&"===a?i+=this.scanXHTMLEntity(r):i+=a}return{type:8,value:i,lineNumber:this.scanner.lineNumber,lineStart:this.scanner.lineStart,start:n,end:this.scanner.index}}if(46===e){var s=this.scanner.source.charCodeAt(this.scanner.index+1),u=this.scanner.source.charCodeAt(this.scanner.index+2),t=46===s&&46===u?"...":".",n=this.scanner.index;return this.scanner.index+=t.length,{type:7,value:t,lineNumber:this.scanner.lineNumber,lineStart:this.scanner.lineStart,start:n,end:this.scanner.index}}if(96===e)return{type:10,value:"",lineNumber:this.scanner.lineNumber,lineStart:this.scanner.lineStart,start:this.scanner.index,end:this.scanner.index};if(o.Character.isIdentifierStart(e)&&92!==e){var n=this.scanner.index;for(++this.scanner.index;!this.scanner.eof();){var a=this.scanner.source.charCodeAt(this.scanner.index);if(o.Character.isIdentifierPart(a)&&92!==a)++this.scanner.index;else if(45===a)++this.scanner.index;else break}return{type:100,value:this.scanner.source.slice(n,this.scanner.index),lineNumber:this.scanner.lineNumber,lineStart:this.scanner.lineStart,start:n,end:this.scanner.index}}return this.scanner.lex()},t.prototype.nextJSXToken=function(){this.collectComments(),this.startMarker.index=this.scanner.index,this.startMarker.line=this.scanner.lineNumber,this.startMarker.column=this.scanner.index-this.scanner.lineStart;var e=this.lexJSX();return this.lastMarker.index=this.scanner.index,this.lastMarker.line=this.scanner.lineNumber,this.lastMarker.column=this.scanner.index-this.scanner.lineStart,this.config.tokens&&this.tokens.push(this.convertToken(e)),e},t.prototype.nextJSXText=function(){this.startMarker.index=this.scanner.index,this.startMarker.line=this.scanner.lineNumber,this.startMarker.column=this.scanner.index-this.scanner.lineStart;for(var e=this.scanner.index,t="";!this.scanner.eof();){var n=this.scanner.source[this.scanner.index];if("{"===n||"<"===n)break;++this.scanner.index,t+=n,o.Character.isLineTerminator(n.charCodeAt(0))&&(++this.scanner.lineNumber,"\r"===n&&"\n"===this.scanner.source[this.scanner.index]&&++this.scanner.index,this.scanner.lineStart=this.scanner.index)}this.lastMarker.index=this.scanner.index,this.lastMarker.line=this.scanner.lineNumber,this.lastMarker.column=this.scanner.index-this.scanner.lineStart;var r={type:101,value:t,lineNumber:this.scanner.lineNumber,lineStart:this.scanner.lineStart,start:e,end:this.scanner.index};return t.length>0&&this.config.tokens&&this.tokens.push(this.convertToken(r)),r},t.prototype.peekJSXToken=function(){var e=this.scanner.saveState();this.scanner.scanComments();var t=this.lexJSX();return this.scanner.restoreState(e),t},t.prototype.expectJSX=function(e){var t=this.nextJSXToken();(7!==t.type||t.value!==e)&&this.throwUnexpectedToken(t)},t.prototype.matchJSX=function(e){var t=this.peekJSXToken();return 7===t.type&&t.value===e},t.prototype.parseJSXIdentifier=function(){var e=this.createJSXNode(),t=this.nextJSXToken();return 100!==t.type&&this.throwUnexpectedToken(t),this.finalize(e,new a.JSXIdentifier(t.value))},t.prototype.parseJSXElementName=function(){var e=this.createJSXNode(),t=this.parseJSXIdentifier();if(this.matchJSX(":")){var n=t;this.expectJSX(":");var r=this.parseJSXIdentifier();t=this.finalize(e,new a.JSXNamespacedName(n,r))}else if(this.matchJSX("."))for(;this.matchJSX(".");){var i=t;this.expectJSX(".");var o=this.parseJSXIdentifier();t=this.finalize(e,new a.JSXMemberExpression(i,o))}return t},t.prototype.parseJSXAttributeName=function(){var e,t=this.createJSXNode(),n=this.parseJSXIdentifier();if(this.matchJSX(":")){var r=n;this.expectJSX(":");var i=this.parseJSXIdentifier();e=this.finalize(t,new a.JSXNamespacedName(r,i))}else e=n;return e},t.prototype.parseJSXStringLiteralAttribute=function(){var e=this.createJSXNode(),t=this.nextJSXToken();8!==t.type&&this.throwUnexpectedToken(t);var n=this.getTokenRaw(t);return this.finalize(e,new u.Literal(t.value,n))},t.prototype.parseJSXExpressionAttribute=function(){var e=this.createJSXNode();this.expectJSX("{"),this.finishJSX(),this.match("}")&&this.tolerateError("JSX attributes must only be assigned a non-empty expression");var t=this.parseAssignmentExpression();return this.reenterJSX(),this.finalize(e,new a.JSXExpressionContainer(t))},t.prototype.parseJSXAttributeValue=function(){return this.matchJSX("{")?this.parseJSXExpressionAttribute():this.matchJSX("<")?this.parseJSXElement():this.parseJSXStringLiteralAttribute()},t.prototype.parseJSXNameValueAttribute=function(){var e=this.createJSXNode(),t=this.parseJSXAttributeName(),n=null;return this.matchJSX("=")&&(this.expectJSX("="),n=this.parseJSXAttributeValue()),this.finalize(e,new a.JSXAttribute(t,n))},t.prototype.parseJSXSpreadAttribute=function(){var e=this.createJSXNode();this.expectJSX("{"),this.expectJSX("..."),this.finishJSX();var t=this.parseAssignmentExpression();return this.reenterJSX(),this.finalize(e,new a.JSXSpreadAttribute(t))},t.prototype.parseJSXAttributes=function(){for(var e=[];!this.matchJSX("/")&&!this.matchJSX(">");){var t=this.matchJSX("{")?this.parseJSXSpreadAttribute():this.parseJSXNameValueAttribute();e.push(t)}return e},t.prototype.parseJSXOpeningElement=function(){var e=this.createJSXNode();this.expectJSX("<");var t=this.parseJSXElementName(),n=this.parseJSXAttributes(),r=this.matchJSX("/");return r&&this.expectJSX("/"),this.expectJSX(">"),this.finalize(e,new a.JSXOpeningElement(t,r,n))},t.prototype.parseJSXBoundaryElement=function(){var e=this.createJSXNode();if(this.expectJSX("<"),this.matchJSX("/")){this.expectJSX("/");var t=this.parseJSXElementName();return this.expectJSX(">"),this.finalize(e,new a.JSXClosingElement(t))}var n=this.parseJSXElementName(),r=this.parseJSXAttributes(),i=this.matchJSX("/");return i&&this.expectJSX("/"),this.expectJSX(">"),this.finalize(e,new a.JSXOpeningElement(n,i,r))},t.prototype.parseJSXEmptyExpression=function(){var e=this.createJSXChildNode();return this.collectComments(),this.lastMarker.index=this.scanner.index,this.lastMarker.line=this.scanner.lineNumber,this.lastMarker.column=this.scanner.index-this.scanner.lineStart,this.finalize(e,new a.JSXEmptyExpression)},t.prototype.parseJSXExpressionContainer=function(){var e,t=this.createJSXNode();return this.expectJSX("{"),this.matchJSX("}")?(e=this.parseJSXEmptyExpression(),this.expectJSX("}")):(this.finishJSX(),e=this.parseAssignmentExpression(),this.reenterJSX()),this.finalize(t,new a.JSXExpressionContainer(e))},t.prototype.parseJSXChildren=function(){for(var e=[];!this.scanner.eof();){var t=this.createJSXChildNode(),n=this.nextJSXText();if(n.start0){var o=this.finalize(e.node,new a.JSXElement(e.opening,e.children,e.closing));(e=t[t.length-1]).children.push(o),t.pop()}else break}}return e},t.prototype.parseJSXElement=function(){var e=this.createJSXNode(),t=this.parseJSXOpeningElement(),n=[],r=null;if(!t.selfClosing){var i=this.parseComplexJSXElement({node:e,opening:t,closing:r,children:n});n=i.children,r=i.closing}return this.finalize(e,new a.JSXElement(t,n,r))},t.prototype.parseJSXRoot=function(){this.config.tokens&&this.tokens.pop(),this.startJSX();var e=this.parseJSXElement();return this.finishJSX(),e},t.prototype.isStartOfExpression=function(){return e.prototype.isStartOfExpression.call(this)||this.match("<")},t}(c.Parser);t.JSXParser=p},function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n={NonAsciiIdentifierStart:/[\xAA\xB5\xBA\xC0-\xD6\xD8-\xF6\xF8-\u02C1\u02C6-\u02D1\u02E0-\u02E4\u02EC\u02EE\u0370-\u0374\u0376\u0377\u037A-\u037D\u037F\u0386\u0388-\u038A\u038C\u038E-\u03A1\u03A3-\u03F5\u03F7-\u0481\u048A-\u052F\u0531-\u0556\u0559\u0561-\u0587\u05D0-\u05EA\u05F0-\u05F2\u0620-\u064A\u066E\u066F\u0671-\u06D3\u06D5\u06E5\u06E6\u06EE\u06EF\u06FA-\u06FC\u06FF\u0710\u0712-\u072F\u074D-\u07A5\u07B1\u07CA-\u07EA\u07F4\u07F5\u07FA\u0800-\u0815\u081A\u0824\u0828\u0840-\u0858\u08A0-\u08B4\u0904-\u0939\u093D\u0950\u0958-\u0961\u0971-\u0980\u0985-\u098C\u098F\u0990\u0993-\u09A8\u09AA-\u09B0\u09B2\u09B6-\u09B9\u09BD\u09CE\u09DC\u09DD\u09DF-\u09E1\u09F0\u09F1\u0A05-\u0A0A\u0A0F\u0A10\u0A13-\u0A28\u0A2A-\u0A30\u0A32\u0A33\u0A35\u0A36\u0A38\u0A39\u0A59-\u0A5C\u0A5E\u0A72-\u0A74\u0A85-\u0A8D\u0A8F-\u0A91\u0A93-\u0AA8\u0AAA-\u0AB0\u0AB2\u0AB3\u0AB5-\u0AB9\u0ABD\u0AD0\u0AE0\u0AE1\u0AF9\u0B05-\u0B0C\u0B0F\u0B10\u0B13-\u0B28\u0B2A-\u0B30\u0B32\u0B33\u0B35-\u0B39\u0B3D\u0B5C\u0B5D\u0B5F-\u0B61\u0B71\u0B83\u0B85-\u0B8A\u0B8E-\u0B90\u0B92-\u0B95\u0B99\u0B9A\u0B9C\u0B9E\u0B9F\u0BA3\u0BA4\u0BA8-\u0BAA\u0BAE-\u0BB9\u0BD0\u0C05-\u0C0C\u0C0E-\u0C10\u0C12-\u0C28\u0C2A-\u0C39\u0C3D\u0C58-\u0C5A\u0C60\u0C61\u0C85-\u0C8C\u0C8E-\u0C90\u0C92-\u0CA8\u0CAA-\u0CB3\u0CB5-\u0CB9\u0CBD\u0CDE\u0CE0\u0CE1\u0CF1\u0CF2\u0D05-\u0D0C\u0D0E-\u0D10\u0D12-\u0D3A\u0D3D\u0D4E\u0D5F-\u0D61\u0D7A-\u0D7F\u0D85-\u0D96\u0D9A-\u0DB1\u0DB3-\u0DBB\u0DBD\u0DC0-\u0DC6\u0E01-\u0E30\u0E32\u0E33\u0E40-\u0E46\u0E81\u0E82\u0E84\u0E87\u0E88\u0E8A\u0E8D\u0E94-\u0E97\u0E99-\u0E9F\u0EA1-\u0EA3\u0EA5\u0EA7\u0EAA\u0EAB\u0EAD-\u0EB0\u0EB2\u0EB3\u0EBD\u0EC0-\u0EC4\u0EC6\u0EDC-\u0EDF\u0F00\u0F40-\u0F47\u0F49-\u0F6C\u0F88-\u0F8C\u1000-\u102A\u103F\u1050-\u1055\u105A-\u105D\u1061\u1065\u1066\u106E-\u1070\u1075-\u1081\u108E\u10A0-\u10C5\u10C7\u10CD\u10D0-\u10FA\u10FC-\u1248\u124A-\u124D\u1250-\u1256\u1258\u125A-\u125D\u1260-\u1288\u128A-\u128D\u1290-\u12B0\u12B2-\u12B5\u12B8-\u12BE\u12C0\u12C2-\u12C5\u12C8-\u12D6\u12D8-\u1310\u1312-\u1315\u1318-\u135A\u1380-\u138F\u13A0-\u13F5\u13F8-\u13FD\u1401-\u166C\u166F-\u167F\u1681-\u169A\u16A0-\u16EA\u16EE-\u16F8\u1700-\u170C\u170E-\u1711\u1720-\u1731\u1740-\u1751\u1760-\u176C\u176E-\u1770\u1780-\u17B3\u17D7\u17DC\u1820-\u1877\u1880-\u18A8\u18AA\u18B0-\u18F5\u1900-\u191E\u1950-\u196D\u1970-\u1974\u1980-\u19AB\u19B0-\u19C9\u1A00-\u1A16\u1A20-\u1A54\u1AA7\u1B05-\u1B33\u1B45-\u1B4B\u1B83-\u1BA0\u1BAE\u1BAF\u1BBA-\u1BE5\u1C00-\u1C23\u1C4D-\u1C4F\u1C5A-\u1C7D\u1CE9-\u1CEC\u1CEE-\u1CF1\u1CF5\u1CF6\u1D00-\u1DBF\u1E00-\u1F15\u1F18-\u1F1D\u1F20-\u1F45\u1F48-\u1F4D\u1F50-\u1F57\u1F59\u1F5B\u1F5D\u1F5F-\u1F7D\u1F80-\u1FB4\u1FB6-\u1FBC\u1FBE\u1FC2-\u1FC4\u1FC6-\u1FCC\u1FD0-\u1FD3\u1FD6-\u1FDB\u1FE0-\u1FEC\u1FF2-\u1FF4\u1FF6-\u1FFC\u2071\u207F\u2090-\u209C\u2102\u2107\u210A-\u2113\u2115\u2118-\u211D\u2124\u2126\u2128\u212A-\u2139\u213C-\u213F\u2145-\u2149\u214E\u2160-\u2188\u2C00-\u2C2E\u2C30-\u2C5E\u2C60-\u2CE4\u2CEB-\u2CEE\u2CF2\u2CF3\u2D00-\u2D25\u2D27\u2D2D\u2D30-\u2D67\u2D6F\u2D80-\u2D96\u2DA0-\u2DA6\u2DA8-\u2DAE\u2DB0-\u2DB6\u2DB8-\u2DBE\u2DC0-\u2DC6\u2DC8-\u2DCE\u2DD0-\u2DD6\u2DD8-\u2DDE\u3005-\u3007\u3021-\u3029\u3031-\u3035\u3038-\u303C\u3041-\u3096\u309B-\u309F\u30A1-\u30FA\u30FC-\u30FF\u3105-\u312D\u3131-\u318E\u31A0-\u31BA\u31F0-\u31FF\u3400-\u4DB5\u4E00-\u9FD5\uA000-\uA48C\uA4D0-\uA4FD\uA500-\uA60C\uA610-\uA61F\uA62A\uA62B\uA640-\uA66E\uA67F-\uA69D\uA6A0-\uA6EF\uA717-\uA71F\uA722-\uA788\uA78B-\uA7AD\uA7B0-\uA7B7\uA7F7-\uA801\uA803-\uA805\uA807-\uA80A\uA80C-\uA822\uA840-\uA873\uA882-\uA8B3\uA8F2-\uA8F7\uA8FB\uA8FD\uA90A-\uA925\uA930-\uA946\uA960-\uA97C\uA984-\uA9B2\uA9CF\uA9E0-\uA9E4\uA9E6-\uA9EF\uA9FA-\uA9FE\uAA00-\uAA28\uAA40-\uAA42\uAA44-\uAA4B\uAA60-\uAA76\uAA7A\uAA7E-\uAAAF\uAAB1\uAAB5\uAAB6\uAAB9-\uAABD\uAAC0\uAAC2\uAADB-\uAADD\uAAE0-\uAAEA\uAAF2-\uAAF4\uAB01-\uAB06\uAB09-\uAB0E\uAB11-\uAB16\uAB20-\uAB26\uAB28-\uAB2E\uAB30-\uAB5A\uAB5C-\uAB65\uAB70-\uABE2\uAC00-\uD7A3\uD7B0-\uD7C6\uD7CB-\uD7FB\uF900-\uFA6D\uFA70-\uFAD9\uFB00-\uFB06\uFB13-\uFB17\uFB1D\uFB1F-\uFB28\uFB2A-\uFB36\uFB38-\uFB3C\uFB3E\uFB40\uFB41\uFB43\uFB44\uFB46-\uFBB1\uFBD3-\uFD3D\uFD50-\uFD8F\uFD92-\uFDC7\uFDF0-\uFDFB\uFE70-\uFE74\uFE76-\uFEFC\uFF21-\uFF3A\uFF41-\uFF5A\uFF66-\uFFBE\uFFC2-\uFFC7\uFFCA-\uFFCF\uFFD2-\uFFD7\uFFDA-\uFFDC]|\uD800[\uDC00-\uDC0B\uDC0D-\uDC26\uDC28-\uDC3A\uDC3C\uDC3D\uDC3F-\uDC4D\uDC50-\uDC5D\uDC80-\uDCFA\uDD40-\uDD74\uDE80-\uDE9C\uDEA0-\uDED0\uDF00-\uDF1F\uDF30-\uDF4A\uDF50-\uDF75\uDF80-\uDF9D\uDFA0-\uDFC3\uDFC8-\uDFCF\uDFD1-\uDFD5]|\uD801[\uDC00-\uDC9D\uDD00-\uDD27\uDD30-\uDD63\uDE00-\uDF36\uDF40-\uDF55\uDF60-\uDF67]|\uD802[\uDC00-\uDC05\uDC08\uDC0A-\uDC35\uDC37\uDC38\uDC3C\uDC3F-\uDC55\uDC60-\uDC76\uDC80-\uDC9E\uDCE0-\uDCF2\uDCF4\uDCF5\uDD00-\uDD15\uDD20-\uDD39\uDD80-\uDDB7\uDDBE\uDDBF\uDE00\uDE10-\uDE13\uDE15-\uDE17\uDE19-\uDE33\uDE60-\uDE7C\uDE80-\uDE9C\uDEC0-\uDEC7\uDEC9-\uDEE4\uDF00-\uDF35\uDF40-\uDF55\uDF60-\uDF72\uDF80-\uDF91]|\uD803[\uDC00-\uDC48\uDC80-\uDCB2\uDCC0-\uDCF2]|\uD804[\uDC03-\uDC37\uDC83-\uDCAF\uDCD0-\uDCE8\uDD03-\uDD26\uDD50-\uDD72\uDD76\uDD83-\uDDB2\uDDC1-\uDDC4\uDDDA\uDDDC\uDE00-\uDE11\uDE13-\uDE2B\uDE80-\uDE86\uDE88\uDE8A-\uDE8D\uDE8F-\uDE9D\uDE9F-\uDEA8\uDEB0-\uDEDE\uDF05-\uDF0C\uDF0F\uDF10\uDF13-\uDF28\uDF2A-\uDF30\uDF32\uDF33\uDF35-\uDF39\uDF3D\uDF50\uDF5D-\uDF61]|\uD805[\uDC80-\uDCAF\uDCC4\uDCC5\uDCC7\uDD80-\uDDAE\uDDD8-\uDDDB\uDE00-\uDE2F\uDE44\uDE80-\uDEAA\uDF00-\uDF19]|\uD806[\uDCA0-\uDCDF\uDCFF\uDEC0-\uDEF8]|\uD808[\uDC00-\uDF99]|\uD809[\uDC00-\uDC6E\uDC80-\uDD43]|[\uD80C\uD840-\uD868\uD86A-\uD86C\uD86F-\uD872][\uDC00-\uDFFF]|\uD80D[\uDC00-\uDC2E]|\uD811[\uDC00-\uDE46]|\uD81A[\uDC00-\uDE38\uDE40-\uDE5E\uDED0-\uDEED\uDF00-\uDF2F\uDF40-\uDF43\uDF63-\uDF77\uDF7D-\uDF8F]|\uD81B[\uDF00-\uDF44\uDF50\uDF93-\uDF9F]|\uD82C[\uDC00\uDC01]|\uD82F[\uDC00-\uDC6A\uDC70-\uDC7C\uDC80-\uDC88\uDC90-\uDC99]|\uD835[\uDC00-\uDC54\uDC56-\uDC9C\uDC9E\uDC9F\uDCA2\uDCA5\uDCA6\uDCA9-\uDCAC\uDCAE-\uDCB9\uDCBB\uDCBD-\uDCC3\uDCC5-\uDD05\uDD07-\uDD0A\uDD0D-\uDD14\uDD16-\uDD1C\uDD1E-\uDD39\uDD3B-\uDD3E\uDD40-\uDD44\uDD46\uDD4A-\uDD50\uDD52-\uDEA5\uDEA8-\uDEC0\uDEC2-\uDEDA\uDEDC-\uDEFA\uDEFC-\uDF14\uDF16-\uDF34\uDF36-\uDF4E\uDF50-\uDF6E\uDF70-\uDF88\uDF8A-\uDFA8\uDFAA-\uDFC2\uDFC4-\uDFCB]|\uD83A[\uDC00-\uDCC4]|\uD83B[\uDE00-\uDE03\uDE05-\uDE1F\uDE21\uDE22\uDE24\uDE27\uDE29-\uDE32\uDE34-\uDE37\uDE39\uDE3B\uDE42\uDE47\uDE49\uDE4B\uDE4D-\uDE4F\uDE51\uDE52\uDE54\uDE57\uDE59\uDE5B\uDE5D\uDE5F\uDE61\uDE62\uDE64\uDE67-\uDE6A\uDE6C-\uDE72\uDE74-\uDE77\uDE79-\uDE7C\uDE7E\uDE80-\uDE89\uDE8B-\uDE9B\uDEA1-\uDEA3\uDEA5-\uDEA9\uDEAB-\uDEBB]|\uD869[\uDC00-\uDED6\uDF00-\uDFFF]|\uD86D[\uDC00-\uDF34\uDF40-\uDFFF]|\uD86E[\uDC00-\uDC1D\uDC20-\uDFFF]|\uD873[\uDC00-\uDEA1]|\uD87E[\uDC00-\uDE1D]/,NonAsciiIdentifierPart:/[\xAA\xB5\xB7\xBA\xC0-\xD6\xD8-\xF6\xF8-\u02C1\u02C6-\u02D1\u02E0-\u02E4\u02EC\u02EE\u0300-\u0374\u0376\u0377\u037A-\u037D\u037F\u0386-\u038A\u038C\u038E-\u03A1\u03A3-\u03F5\u03F7-\u0481\u0483-\u0487\u048A-\u052F\u0531-\u0556\u0559\u0561-\u0587\u0591-\u05BD\u05BF\u05C1\u05C2\u05C4\u05C5\u05C7\u05D0-\u05EA\u05F0-\u05F2\u0610-\u061A\u0620-\u0669\u066E-\u06D3\u06D5-\u06DC\u06DF-\u06E8\u06EA-\u06FC\u06FF\u0710-\u074A\u074D-\u07B1\u07C0-\u07F5\u07FA\u0800-\u082D\u0840-\u085B\u08A0-\u08B4\u08E3-\u0963\u0966-\u096F\u0971-\u0983\u0985-\u098C\u098F\u0990\u0993-\u09A8\u09AA-\u09B0\u09B2\u09B6-\u09B9\u09BC-\u09C4\u09C7\u09C8\u09CB-\u09CE\u09D7\u09DC\u09DD\u09DF-\u09E3\u09E6-\u09F1\u0A01-\u0A03\u0A05-\u0A0A\u0A0F\u0A10\u0A13-\u0A28\u0A2A-\u0A30\u0A32\u0A33\u0A35\u0A36\u0A38\u0A39\u0A3C\u0A3E-\u0A42\u0A47\u0A48\u0A4B-\u0A4D\u0A51\u0A59-\u0A5C\u0A5E\u0A66-\u0A75\u0A81-\u0A83\u0A85-\u0A8D\u0A8F-\u0A91\u0A93-\u0AA8\u0AAA-\u0AB0\u0AB2\u0AB3\u0AB5-\u0AB9\u0ABC-\u0AC5\u0AC7-\u0AC9\u0ACB-\u0ACD\u0AD0\u0AE0-\u0AE3\u0AE6-\u0AEF\u0AF9\u0B01-\u0B03\u0B05-\u0B0C\u0B0F\u0B10\u0B13-\u0B28\u0B2A-\u0B30\u0B32\u0B33\u0B35-\u0B39\u0B3C-\u0B44\u0B47\u0B48\u0B4B-\u0B4D\u0B56\u0B57\u0B5C\u0B5D\u0B5F-\u0B63\u0B66-\u0B6F\u0B71\u0B82\u0B83\u0B85-\u0B8A\u0B8E-\u0B90\u0B92-\u0B95\u0B99\u0B9A\u0B9C\u0B9E\u0B9F\u0BA3\u0BA4\u0BA8-\u0BAA\u0BAE-\u0BB9\u0BBE-\u0BC2\u0BC6-\u0BC8\u0BCA-\u0BCD\u0BD0\u0BD7\u0BE6-\u0BEF\u0C00-\u0C03\u0C05-\u0C0C\u0C0E-\u0C10\u0C12-\u0C28\u0C2A-\u0C39\u0C3D-\u0C44\u0C46-\u0C48\u0C4A-\u0C4D\u0C55\u0C56\u0C58-\u0C5A\u0C60-\u0C63\u0C66-\u0C6F\u0C81-\u0C83\u0C85-\u0C8C\u0C8E-\u0C90\u0C92-\u0CA8\u0CAA-\u0CB3\u0CB5-\u0CB9\u0CBC-\u0CC4\u0CC6-\u0CC8\u0CCA-\u0CCD\u0CD5\u0CD6\u0CDE\u0CE0-\u0CE3\u0CE6-\u0CEF\u0CF1\u0CF2\u0D01-\u0D03\u0D05-\u0D0C\u0D0E-\u0D10\u0D12-\u0D3A\u0D3D-\u0D44\u0D46-\u0D48\u0D4A-\u0D4E\u0D57\u0D5F-\u0D63\u0D66-\u0D6F\u0D7A-\u0D7F\u0D82\u0D83\u0D85-\u0D96\u0D9A-\u0DB1\u0DB3-\u0DBB\u0DBD\u0DC0-\u0DC6\u0DCA\u0DCF-\u0DD4\u0DD6\u0DD8-\u0DDF\u0DE6-\u0DEF\u0DF2\u0DF3\u0E01-\u0E3A\u0E40-\u0E4E\u0E50-\u0E59\u0E81\u0E82\u0E84\u0E87\u0E88\u0E8A\u0E8D\u0E94-\u0E97\u0E99-\u0E9F\u0EA1-\u0EA3\u0EA5\u0EA7\u0EAA\u0EAB\u0EAD-\u0EB9\u0EBB-\u0EBD\u0EC0-\u0EC4\u0EC6\u0EC8-\u0ECD\u0ED0-\u0ED9\u0EDC-\u0EDF\u0F00\u0F18\u0F19\u0F20-\u0F29\u0F35\u0F37\u0F39\u0F3E-\u0F47\u0F49-\u0F6C\u0F71-\u0F84\u0F86-\u0F97\u0F99-\u0FBC\u0FC6\u1000-\u1049\u1050-\u109D\u10A0-\u10C5\u10C7\u10CD\u10D0-\u10FA\u10FC-\u1248\u124A-\u124D\u1250-\u1256\u1258\u125A-\u125D\u1260-\u1288\u128A-\u128D\u1290-\u12B0\u12B2-\u12B5\u12B8-\u12BE\u12C0\u12C2-\u12C5\u12C8-\u12D6\u12D8-\u1310\u1312-\u1315\u1318-\u135A\u135D-\u135F\u1369-\u1371\u1380-\u138F\u13A0-\u13F5\u13F8-\u13FD\u1401-\u166C\u166F-\u167F\u1681-\u169A\u16A0-\u16EA\u16EE-\u16F8\u1700-\u170C\u170E-\u1714\u1720-\u1734\u1740-\u1753\u1760-\u176C\u176E-\u1770\u1772\u1773\u1780-\u17D3\u17D7\u17DC\u17DD\u17E0-\u17E9\u180B-\u180D\u1810-\u1819\u1820-\u1877\u1880-\u18AA\u18B0-\u18F5\u1900-\u191E\u1920-\u192B\u1930-\u193B\u1946-\u196D\u1970-\u1974\u1980-\u19AB\u19B0-\u19C9\u19D0-\u19DA\u1A00-\u1A1B\u1A20-\u1A5E\u1A60-\u1A7C\u1A7F-\u1A89\u1A90-\u1A99\u1AA7\u1AB0-\u1ABD\u1B00-\u1B4B\u1B50-\u1B59\u1B6B-\u1B73\u1B80-\u1BF3\u1C00-\u1C37\u1C40-\u1C49\u1C4D-\u1C7D\u1CD0-\u1CD2\u1CD4-\u1CF6\u1CF8\u1CF9\u1D00-\u1DF5\u1DFC-\u1F15\u1F18-\u1F1D\u1F20-\u1F45\u1F48-\u1F4D\u1F50-\u1F57\u1F59\u1F5B\u1F5D\u1F5F-\u1F7D\u1F80-\u1FB4\u1FB6-\u1FBC\u1FBE\u1FC2-\u1FC4\u1FC6-\u1FCC\u1FD0-\u1FD3\u1FD6-\u1FDB\u1FE0-\u1FEC\u1FF2-\u1FF4\u1FF6-\u1FFC\u200C\u200D\u203F\u2040\u2054\u2071\u207F\u2090-\u209C\u20D0-\u20DC\u20E1\u20E5-\u20F0\u2102\u2107\u210A-\u2113\u2115\u2118-\u211D\u2124\u2126\u2128\u212A-\u2139\u213C-\u213F\u2145-\u2149\u214E\u2160-\u2188\u2C00-\u2C2E\u2C30-\u2C5E\u2C60-\u2CE4\u2CEB-\u2CF3\u2D00-\u2D25\u2D27\u2D2D\u2D30-\u2D67\u2D6F\u2D7F-\u2D96\u2DA0-\u2DA6\u2DA8-\u2DAE\u2DB0-\u2DB6\u2DB8-\u2DBE\u2DC0-\u2DC6\u2DC8-\u2DCE\u2DD0-\u2DD6\u2DD8-\u2DDE\u2DE0-\u2DFF\u3005-\u3007\u3021-\u302F\u3031-\u3035\u3038-\u303C\u3041-\u3096\u3099-\u309F\u30A1-\u30FA\u30FC-\u30FF\u3105-\u312D\u3131-\u318E\u31A0-\u31BA\u31F0-\u31FF\u3400-\u4DB5\u4E00-\u9FD5\uA000-\uA48C\uA4D0-\uA4FD\uA500-\uA60C\uA610-\uA62B\uA640-\uA66F\uA674-\uA67D\uA67F-\uA6F1\uA717-\uA71F\uA722-\uA788\uA78B-\uA7AD\uA7B0-\uA7B7\uA7F7-\uA827\uA840-\uA873\uA880-\uA8C4\uA8D0-\uA8D9\uA8E0-\uA8F7\uA8FB\uA8FD\uA900-\uA92D\uA930-\uA953\uA960-\uA97C\uA980-\uA9C0\uA9CF-\uA9D9\uA9E0-\uA9FE\uAA00-\uAA36\uAA40-\uAA4D\uAA50-\uAA59\uAA60-\uAA76\uAA7A-\uAAC2\uAADB-\uAADD\uAAE0-\uAAEF\uAAF2-\uAAF6\uAB01-\uAB06\uAB09-\uAB0E\uAB11-\uAB16\uAB20-\uAB26\uAB28-\uAB2E\uAB30-\uAB5A\uAB5C-\uAB65\uAB70-\uABEA\uABEC\uABED\uABF0-\uABF9\uAC00-\uD7A3\uD7B0-\uD7C6\uD7CB-\uD7FB\uF900-\uFA6D\uFA70-\uFAD9\uFB00-\uFB06\uFB13-\uFB17\uFB1D-\uFB28\uFB2A-\uFB36\uFB38-\uFB3C\uFB3E\uFB40\uFB41\uFB43\uFB44\uFB46-\uFBB1\uFBD3-\uFD3D\uFD50-\uFD8F\uFD92-\uFDC7\uFDF0-\uFDFB\uFE00-\uFE0F\uFE20-\uFE2F\uFE33\uFE34\uFE4D-\uFE4F\uFE70-\uFE74\uFE76-\uFEFC\uFF10-\uFF19\uFF21-\uFF3A\uFF3F\uFF41-\uFF5A\uFF66-\uFFBE\uFFC2-\uFFC7\uFFCA-\uFFCF\uFFD2-\uFFD7\uFFDA-\uFFDC]|\uD800[\uDC00-\uDC0B\uDC0D-\uDC26\uDC28-\uDC3A\uDC3C\uDC3D\uDC3F-\uDC4D\uDC50-\uDC5D\uDC80-\uDCFA\uDD40-\uDD74\uDDFD\uDE80-\uDE9C\uDEA0-\uDED0\uDEE0\uDF00-\uDF1F\uDF30-\uDF4A\uDF50-\uDF7A\uDF80-\uDF9D\uDFA0-\uDFC3\uDFC8-\uDFCF\uDFD1-\uDFD5]|\uD801[\uDC00-\uDC9D\uDCA0-\uDCA9\uDD00-\uDD27\uDD30-\uDD63\uDE00-\uDF36\uDF40-\uDF55\uDF60-\uDF67]|\uD802[\uDC00-\uDC05\uDC08\uDC0A-\uDC35\uDC37\uDC38\uDC3C\uDC3F-\uDC55\uDC60-\uDC76\uDC80-\uDC9E\uDCE0-\uDCF2\uDCF4\uDCF5\uDD00-\uDD15\uDD20-\uDD39\uDD80-\uDDB7\uDDBE\uDDBF\uDE00-\uDE03\uDE05\uDE06\uDE0C-\uDE13\uDE15-\uDE17\uDE19-\uDE33\uDE38-\uDE3A\uDE3F\uDE60-\uDE7C\uDE80-\uDE9C\uDEC0-\uDEC7\uDEC9-\uDEE6\uDF00-\uDF35\uDF40-\uDF55\uDF60-\uDF72\uDF80-\uDF91]|\uD803[\uDC00-\uDC48\uDC80-\uDCB2\uDCC0-\uDCF2]|\uD804[\uDC00-\uDC46\uDC66-\uDC6F\uDC7F-\uDCBA\uDCD0-\uDCE8\uDCF0-\uDCF9\uDD00-\uDD34\uDD36-\uDD3F\uDD50-\uDD73\uDD76\uDD80-\uDDC4\uDDCA-\uDDCC\uDDD0-\uDDDA\uDDDC\uDE00-\uDE11\uDE13-\uDE37\uDE80-\uDE86\uDE88\uDE8A-\uDE8D\uDE8F-\uDE9D\uDE9F-\uDEA8\uDEB0-\uDEEA\uDEF0-\uDEF9\uDF00-\uDF03\uDF05-\uDF0C\uDF0F\uDF10\uDF13-\uDF28\uDF2A-\uDF30\uDF32\uDF33\uDF35-\uDF39\uDF3C-\uDF44\uDF47\uDF48\uDF4B-\uDF4D\uDF50\uDF57\uDF5D-\uDF63\uDF66-\uDF6C\uDF70-\uDF74]|\uD805[\uDC80-\uDCC5\uDCC7\uDCD0-\uDCD9\uDD80-\uDDB5\uDDB8-\uDDC0\uDDD8-\uDDDD\uDE00-\uDE40\uDE44\uDE50-\uDE59\uDE80-\uDEB7\uDEC0-\uDEC9\uDF00-\uDF19\uDF1D-\uDF2B\uDF30-\uDF39]|\uD806[\uDCA0-\uDCE9\uDCFF\uDEC0-\uDEF8]|\uD808[\uDC00-\uDF99]|\uD809[\uDC00-\uDC6E\uDC80-\uDD43]|[\uD80C\uD840-\uD868\uD86A-\uD86C\uD86F-\uD872][\uDC00-\uDFFF]|\uD80D[\uDC00-\uDC2E]|\uD811[\uDC00-\uDE46]|\uD81A[\uDC00-\uDE38\uDE40-\uDE5E\uDE60-\uDE69\uDED0-\uDEED\uDEF0-\uDEF4\uDF00-\uDF36\uDF40-\uDF43\uDF50-\uDF59\uDF63-\uDF77\uDF7D-\uDF8F]|\uD81B[\uDF00-\uDF44\uDF50-\uDF7E\uDF8F-\uDF9F]|\uD82C[\uDC00\uDC01]|\uD82F[\uDC00-\uDC6A\uDC70-\uDC7C\uDC80-\uDC88\uDC90-\uDC99\uDC9D\uDC9E]|\uD834[\uDD65-\uDD69\uDD6D-\uDD72\uDD7B-\uDD82\uDD85-\uDD8B\uDDAA-\uDDAD\uDE42-\uDE44]|\uD835[\uDC00-\uDC54\uDC56-\uDC9C\uDC9E\uDC9F\uDCA2\uDCA5\uDCA6\uDCA9-\uDCAC\uDCAE-\uDCB9\uDCBB\uDCBD-\uDCC3\uDCC5-\uDD05\uDD07-\uDD0A\uDD0D-\uDD14\uDD16-\uDD1C\uDD1E-\uDD39\uDD3B-\uDD3E\uDD40-\uDD44\uDD46\uDD4A-\uDD50\uDD52-\uDEA5\uDEA8-\uDEC0\uDEC2-\uDEDA\uDEDC-\uDEFA\uDEFC-\uDF14\uDF16-\uDF34\uDF36-\uDF4E\uDF50-\uDF6E\uDF70-\uDF88\uDF8A-\uDFA8\uDFAA-\uDFC2\uDFC4-\uDFCB\uDFCE-\uDFFF]|\uD836[\uDE00-\uDE36\uDE3B-\uDE6C\uDE75\uDE84\uDE9B-\uDE9F\uDEA1-\uDEAF]|\uD83A[\uDC00-\uDCC4\uDCD0-\uDCD6]|\uD83B[\uDE00-\uDE03\uDE05-\uDE1F\uDE21\uDE22\uDE24\uDE27\uDE29-\uDE32\uDE34-\uDE37\uDE39\uDE3B\uDE42\uDE47\uDE49\uDE4B\uDE4D-\uDE4F\uDE51\uDE52\uDE54\uDE57\uDE59\uDE5B\uDE5D\uDE5F\uDE61\uDE62\uDE64\uDE67-\uDE6A\uDE6C-\uDE72\uDE74-\uDE77\uDE79-\uDE7C\uDE7E\uDE80-\uDE89\uDE8B-\uDE9B\uDEA1-\uDEA3\uDEA5-\uDEA9\uDEAB-\uDEBB]|\uD869[\uDC00-\uDED6\uDF00-\uDFFF]|\uD86D[\uDC00-\uDF34\uDF40-\uDFFF]|\uD86E[\uDC00-\uDC1D\uDC20-\uDFFF]|\uD873[\uDC00-\uDEA1]|\uD87E[\uDC00-\uDE1D]|\uDB40[\uDD00-\uDDEF]/};t.Character={fromCodePoint:function(e){return e<65536?String.fromCharCode(e):String.fromCharCode(55296+(e-65536>>10))+String.fromCharCode(56320+(e-65536&1023))},isWhiteSpace:function(e){return 32===e||9===e||11===e||12===e||160===e||e>=5760&&[5760,8192,8193,8194,8195,8196,8197,8198,8199,8200,8201,8202,8239,8287,12288,65279].indexOf(e)>=0},isLineTerminator:function(e){return 10===e||13===e||8232===e||8233===e},isIdentifierStart:function(e){return 36===e||95===e||e>=65&&e<=90||e>=97&&e<=122||92===e||e>=128&&n.NonAsciiIdentifierStart.test(t.Character.fromCodePoint(e))},isIdentifierPart:function(e){return 36===e||95===e||e>=65&&e<=90||e>=97&&e<=122||e>=48&&e<=57||92===e||e>=128&&n.NonAsciiIdentifierPart.test(t.Character.fromCodePoint(e))},isDecimalDigit:function(e){return e>=48&&e<=57},isHexDigit:function(e){return e>=48&&e<=57||e>=65&&e<=70||e>=97&&e<=102},isOctalDigit:function(e){return e>=48&&e<=55}}},function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var r=n(6),i=function(){function e(e){this.type=r.JSXSyntax.JSXClosingElement,this.name=e}return e}();t.JSXClosingElement=i;var o=function(){function e(e,t,n){this.type=r.JSXSyntax.JSXElement,this.openingElement=e,this.children=t,this.closingElement=n}return e}();t.JSXElement=o;var a=function(){function e(){this.type=r.JSXSyntax.JSXEmptyExpression}return e}();t.JSXEmptyExpression=a;var s=function(){function e(e){this.type=r.JSXSyntax.JSXExpressionContainer,this.expression=e}return e}();t.JSXExpressionContainer=s;var u=function(){function e(e){this.type=r.JSXSyntax.JSXIdentifier,this.name=e}return e}();t.JSXIdentifier=u;var c=function(){function e(e,t){this.type=r.JSXSyntax.JSXMemberExpression,this.object=e,this.property=t}return e}();t.JSXMemberExpression=c;var l=function(){function e(e,t){this.type=r.JSXSyntax.JSXAttribute,this.name=e,this.value=t}return e}();t.JSXAttribute=l;var f=function(){function e(e,t){this.type=r.JSXSyntax.JSXNamespacedName,this.namespace=e,this.name=t}return e}();t.JSXNamespacedName=f;var d=function(){function e(e,t,n){this.type=r.JSXSyntax.JSXOpeningElement,this.name=e,this.selfClosing=t,this.attributes=n}return e}();t.JSXOpeningElement=d;var p=function(){function e(e){this.type=r.JSXSyntax.JSXSpreadAttribute,this.argument=e}return e}();t.JSXSpreadAttribute=p;var h=function(){function e(e,t){this.type=r.JSXSyntax.JSXText,this.value=e,this.raw=t}return e}();t.JSXText=h},function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.JSXSyntax={JSXAttribute:"JSXAttribute",JSXClosingElement:"JSXClosingElement",JSXElement:"JSXElement",JSXEmptyExpression:"JSXEmptyExpression",JSXExpressionContainer:"JSXExpressionContainer",JSXIdentifier:"JSXIdentifier",JSXMemberExpression:"JSXMemberExpression",JSXNamespacedName:"JSXNamespacedName",JSXOpeningElement:"JSXOpeningElement",JSXSpreadAttribute:"JSXSpreadAttribute",JSXText:"JSXText"}},function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var r=n(2),i=function(){function e(e){this.type=r.Syntax.ArrayExpression,this.elements=e}return e}();t.ArrayExpression=i;var o=function(){function e(e){this.type=r.Syntax.ArrayPattern,this.elements=e}return e}();t.ArrayPattern=o;var a=function(){function e(e,t,n){this.type=r.Syntax.ArrowFunctionExpression,this.id=null,this.params=e,this.body=t,this.generator=!1,this.expression=n,this.async=!1}return e}();t.ArrowFunctionExpression=a;var s=function(){function e(e,t,n){this.type=r.Syntax.AssignmentExpression,this.operator=e,this.left=t,this.right=n}return e}();t.AssignmentExpression=s;var u=function(){function e(e,t){this.type=r.Syntax.AssignmentPattern,this.left=e,this.right=t}return e}();t.AssignmentPattern=u;var c=function(){function e(e,t,n){this.type=r.Syntax.ArrowFunctionExpression,this.id=null,this.params=e,this.body=t,this.generator=!1,this.expression=n,this.async=!0}return e}();t.AsyncArrowFunctionExpression=c;var l=function(){function e(e,t,n){this.type=r.Syntax.FunctionDeclaration,this.id=e,this.params=t,this.body=n,this.generator=!1,this.expression=!1,this.async=!0}return e}();t.AsyncFunctionDeclaration=l;var f=function(){function e(e,t,n){this.type=r.Syntax.FunctionExpression,this.id=e,this.params=t,this.body=n,this.generator=!1,this.expression=!1,this.async=!0}return e}();t.AsyncFunctionExpression=f;var d=function(){function e(e){this.type=r.Syntax.AwaitExpression,this.argument=e}return e}();t.AwaitExpression=d;var p=function(){function e(e,t,n){var i="||"===e||"&&"===e;this.type=i?r.Syntax.LogicalExpression:r.Syntax.BinaryExpression,this.operator=e,this.left=t,this.right=n}return e}();t.BinaryExpression=p;var h=function(){function e(e){this.type=r.Syntax.BlockStatement,this.body=e}return e}();t.BlockStatement=h;var m=function(){function e(e){this.type=r.Syntax.BreakStatement,this.label=e}return e}();t.BreakStatement=m;var v=function(){function e(e,t){this.type=r.Syntax.CallExpression,this.callee=e,this.arguments=t}return e}();t.CallExpression=v;var g=function(){function e(e,t){this.type=r.Syntax.CatchClause,this.param=e,this.body=t}return e}();t.CatchClause=g;var y=function(){function e(e){this.type=r.Syntax.ClassBody,this.body=e}return e}();t.ClassBody=y;var b=function(){function e(e,t,n){this.type=r.Syntax.ClassDeclaration,this.id=e,this.superClass=t,this.body=n}return e}();t.ClassDeclaration=b;var E=function(){function e(e,t,n){this.type=r.Syntax.ClassExpression,this.id=e,this.superClass=t,this.body=n}return e}();t.ClassExpression=E;var w=function(){function e(e,t){this.type=r.Syntax.MemberExpression,this.computed=!0,this.object=e,this.property=t}return e}();t.ComputedMemberExpression=w;var x=function(){function e(e,t,n){this.type=r.Syntax.ConditionalExpression,this.test=e,this.consequent=t,this.alternate=n}return e}();t.ConditionalExpression=x;var _=function(){function e(e){this.type=r.Syntax.ContinueStatement,this.label=e}return e}();t.ContinueStatement=_;var S=function(){function e(){this.type=r.Syntax.DebuggerStatement}return e}();t.DebuggerStatement=S;var C=function(){function e(e,t){this.type=r.Syntax.ExpressionStatement,this.expression=e,this.directive=t}return e}();t.Directive=C;var A=function(){function e(e,t){this.type=r.Syntax.DoWhileStatement,this.body=e,this.test=t}return e}();t.DoWhileStatement=A;var D=function(){function e(){this.type=r.Syntax.EmptyStatement}return e}();t.EmptyStatement=D;var O=function(){function e(e){this.type=r.Syntax.ExportAllDeclaration,this.source=e}return e}();t.ExportAllDeclaration=O;var k=function(){function e(e){this.type=r.Syntax.ExportDefaultDeclaration,this.declaration=e}return e}();t.ExportDefaultDeclaration=k;var T=function(){function e(e,t,n){this.type=r.Syntax.ExportNamedDeclaration,this.declaration=e,this.specifiers=t,this.source=n}return e}();t.ExportNamedDeclaration=T;var N=function(){function e(e,t){this.type=r.Syntax.ExportSpecifier,this.exported=t,this.local=e}return e}();t.ExportSpecifier=N;var P=function(){function e(e){this.type=r.Syntax.ExpressionStatement,this.expression=e}return e}();t.ExpressionStatement=P;var I=function(){function e(e,t,n){this.type=r.Syntax.ForInStatement,this.left=e,this.right=t,this.body=n,this.each=!1}return e}();t.ForInStatement=I;var M=function(){function e(e,t,n){this.type=r.Syntax.ForOfStatement,this.left=e,this.right=t,this.body=n}return e}();t.ForOfStatement=M;var F=function(){function e(e,t,n,i){this.type=r.Syntax.ForStatement,this.init=e,this.test=t,this.update=n,this.body=i}return e}();t.ForStatement=F;var R=function(){function e(e,t,n,i){this.type=r.Syntax.FunctionDeclaration,this.id=e,this.params=t,this.body=n,this.generator=i,this.expression=!1,this.async=!1}return e}();t.FunctionDeclaration=R;var L=function(){function e(e,t,n,i){this.type=r.Syntax.FunctionExpression,this.id=e,this.params=t,this.body=n,this.generator=i,this.expression=!1,this.async=!1}return e}();t.FunctionExpression=L;var j=function(){function e(e){this.type=r.Syntax.Identifier,this.name=e}return e}();t.Identifier=j;var B=function(){function e(e,t,n){this.type=r.Syntax.IfStatement,this.test=e,this.consequent=t,this.alternate=n}return e}();t.IfStatement=B;var U=function(){function e(e,t){this.type=r.Syntax.ImportDeclaration,this.specifiers=e,this.source=t}return e}();t.ImportDeclaration=U;var Z=function(){function e(e){this.type=r.Syntax.ImportDefaultSpecifier,this.local=e}return e}();t.ImportDefaultSpecifier=Z;var V=function(){function e(e){this.type=r.Syntax.ImportNamespaceSpecifier,this.local=e}return e}();t.ImportNamespaceSpecifier=V;var z=function(){function e(e,t){this.type=r.Syntax.ImportSpecifier,this.local=e,this.imported=t}return e}();t.ImportSpecifier=z;var H=function(){function e(e,t){this.type=r.Syntax.LabeledStatement,this.label=e,this.body=t}return e}();t.LabeledStatement=H;var W=function(){function e(e,t){this.type=r.Syntax.Literal,this.value=e,this.raw=t}return e}();t.Literal=W;var $=function(){function e(e,t){this.type=r.Syntax.MetaProperty,this.meta=e,this.property=t}return e}();t.MetaProperty=$;var G=function(){function e(e,t,n,i,o){this.type=r.Syntax.MethodDefinition,this.key=e,this.computed=t,this.value=n,this.kind=i,this.static=o}return e}();t.MethodDefinition=G;var q=function(){function e(e){this.type=r.Syntax.Program,this.body=e,this.sourceType="module"}return e}();t.Module=q;var K=function(){function e(e,t){this.type=r.Syntax.NewExpression,this.callee=e,this.arguments=t}return e}();t.NewExpression=K;var Y=function(){function e(e){this.type=r.Syntax.ObjectExpression,this.properties=e}return e}();t.ObjectExpression=Y;var X=function(){function e(e){this.type=r.Syntax.ObjectPattern,this.properties=e}return e}();t.ObjectPattern=X;var J=function(){function e(e,t,n,i,o,a){this.type=r.Syntax.Property,this.key=t,this.computed=n,this.value=i,this.kind=e,this.method=o,this.shorthand=a}return e}();t.Property=J;var Q=function(){function e(e,t,n,i){this.type=r.Syntax.Literal,this.value=e,this.raw=t,this.regex={pattern:n,flags:i}}return e}();t.RegexLiteral=Q;var ee=function(){function e(e){this.type=r.Syntax.RestElement,this.argument=e}return e}();t.RestElement=ee;var et=function(){function e(e){this.type=r.Syntax.ReturnStatement,this.argument=e}return e}();t.ReturnStatement=et;var en=function(){function e(e){this.type=r.Syntax.Program,this.body=e,this.sourceType="script"}return e}();t.Script=en;var er=function(){function e(e){this.type=r.Syntax.SequenceExpression,this.expressions=e}return e}();t.SequenceExpression=er;var ei=function(){function e(e){this.type=r.Syntax.SpreadElement,this.argument=e}return e}();t.SpreadElement=ei;var eo=function(){function e(e,t){this.type=r.Syntax.MemberExpression,this.computed=!1,this.object=e,this.property=t}return e}();t.StaticMemberExpression=eo;var ea=function(){function e(){this.type=r.Syntax.Super}return e}();t.Super=ea;var es=function(){function e(e,t){this.type=r.Syntax.SwitchCase,this.test=e,this.consequent=t}return e}();t.SwitchCase=es;var eu=function(){function e(e,t){this.type=r.Syntax.SwitchStatement,this.discriminant=e,this.cases=t}return e}();t.SwitchStatement=eu;var ec=function(){function e(e,t){this.type=r.Syntax.TaggedTemplateExpression,this.tag=e,this.quasi=t}return e}();t.TaggedTemplateExpression=ec;var el=function(){function e(e,t){this.type=r.Syntax.TemplateElement,this.value=e,this.tail=t}return e}();t.TemplateElement=el;var ef=function(){function e(e,t){this.type=r.Syntax.TemplateLiteral,this.quasis=e,this.expressions=t}return e}();t.TemplateLiteral=ef;var ed=function(){function e(){this.type=r.Syntax.ThisExpression}return e}();t.ThisExpression=ed;var ep=function(){function e(e){this.type=r.Syntax.ThrowStatement,this.argument=e}return e}();t.ThrowStatement=ep;var eh=function(){function e(e,t,n){this.type=r.Syntax.TryStatement,this.block=e,this.handler=t,this.finalizer=n}return e}();t.TryStatement=eh;var em=function(){function e(e,t){this.type=r.Syntax.UnaryExpression,this.operator=e,this.argument=t,this.prefix=!0}return e}();t.UnaryExpression=em;var ev=function(){function e(e,t,n){this.type=r.Syntax.UpdateExpression,this.operator=e,this.argument=t,this.prefix=n}return e}();t.UpdateExpression=ev;var eg=function(){function e(e,t){this.type=r.Syntax.VariableDeclaration,this.declarations=e,this.kind=t}return e}();t.VariableDeclaration=eg;var ey=function(){function e(e,t){this.type=r.Syntax.VariableDeclarator,this.id=e,this.init=t}return e}();t.VariableDeclarator=ey;var eb=function(){function e(e,t){this.type=r.Syntax.WhileStatement,this.test=e,this.body=t}return e}();t.WhileStatement=eb;var eE=function(){function e(e,t){this.type=r.Syntax.WithStatement,this.object=e,this.body=t}return e}();t.WithStatement=eE;var ew=function(){function e(e,t){this.type=r.Syntax.YieldExpression,this.argument=e,this.delegate=t}return e}();t.YieldExpression=ew},function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var r=n(9),i=n(10),o=n(11),a=n(7),s=n(12),u=n(2),c=n(13),l="ArrowParameterPlaceHolder",f=function(){function e(e,t,n){void 0===t&&(t={}),this.config={range:"boolean"==typeof t.range&&t.range,loc:"boolean"==typeof t.loc&&t.loc,source:null,tokens:"boolean"==typeof t.tokens&&t.tokens,comment:"boolean"==typeof t.comment&&t.comment,tolerant:"boolean"==typeof t.tolerant&&t.tolerant},this.config.loc&&t.source&&null!==t.source&&(this.config.source=String(t.source)),this.delegate=n,this.errorHandler=new i.ErrorHandler,this.errorHandler.tolerant=this.config.tolerant,this.scanner=new s.Scanner(e,this.errorHandler),this.scanner.trackComment=this.config.comment,this.operatorPrecedence={")":0,";":0,",":0,"=":0,"]":0,"||":1,"&&":2,"|":3,"^":4,"&":5,"==":6,"!=":6,"===":6,"!==":6,"<":7,">":7,"<=":7,">=":7,"<<":8,">>":8,">>>":8,"+":9,"-":9,"*":11,"/":11,"%":11},this.lookahead={type:2,value:"",lineNumber:this.scanner.lineNumber,lineStart:0,start:0,end:0},this.hasLineTerminator=!1,this.context={isModule:!1,await:!1,allowIn:!0,allowStrictDirective:!0,allowYield:!0,firstCoverInitializedNameError:null,isAssignmentTarget:!1,isBindingElement:!1,inFunctionBody:!1,inIteration:!1,inSwitch:!1,labelSet:{},strict:!1},this.tokens=[],this.startMarker={index:0,line:this.scanner.lineNumber,column:0},this.lastMarker={index:0,line:this.scanner.lineNumber,column:0},this.nextToken(),this.lastMarker={index:this.scanner.index,line:this.scanner.lineNumber,column:this.scanner.index-this.scanner.lineStart}}return e.prototype.throwError=function(e){for(var t=[],n=1;n0&&this.delegate)for(var t=0;t>="===e||">>>="===e||"&="===e||"^="===e||"|="===e},e.prototype.isolateCoverGrammar=function(e){var t=this.context.isBindingElement,n=this.context.isAssignmentTarget,r=this.context.firstCoverInitializedNameError;this.context.isBindingElement=!0,this.context.isAssignmentTarget=!0,this.context.firstCoverInitializedNameError=null;var i=e.call(this);return null!==this.context.firstCoverInitializedNameError&&this.throwUnexpectedToken(this.context.firstCoverInitializedNameError),this.context.isBindingElement=t,this.context.isAssignmentTarget=n,this.context.firstCoverInitializedNameError=r,i},e.prototype.inheritCoverGrammar=function(e){var t=this.context.isBindingElement,n=this.context.isAssignmentTarget,r=this.context.firstCoverInitializedNameError;this.context.isBindingElement=!0,this.context.isAssignmentTarget=!0,this.context.firstCoverInitializedNameError=null;var i=e.call(this);return this.context.isBindingElement=this.context.isBindingElement&&t,this.context.isAssignmentTarget=this.context.isAssignmentTarget&&n,this.context.firstCoverInitializedNameError=r||this.context.firstCoverInitializedNameError,i},e.prototype.consumeSemicolon=function(){this.match(";")?this.nextToken():this.hasLineTerminator||(2===this.lookahead.type||this.match("}")||this.throwUnexpectedToken(this.lookahead),this.lastMarker.index=this.startMarker.index,this.lastMarker.line=this.startMarker.line,this.lastMarker.column=this.startMarker.column)},e.prototype.parsePrimaryExpression=function(){var e,t,n,r=this.createNode();switch(this.lookahead.type){case 3:(this.context.isModule||this.context.await)&&"await"===this.lookahead.value&&this.tolerateUnexpectedToken(this.lookahead),e=this.matchAsyncFunction()?this.parseFunctionExpression():this.finalize(r,new a.Identifier(this.nextToken().value));break;case 6:case 8:this.context.strict&&this.lookahead.octal&&this.tolerateUnexpectedToken(this.lookahead,o.Messages.StrictOctalLiteral),this.context.isAssignmentTarget=!1,this.context.isBindingElement=!1,t=this.nextToken(),n=this.getTokenRaw(t),e=this.finalize(r,new a.Literal(t.value,n));break;case 1:this.context.isAssignmentTarget=!1,this.context.isBindingElement=!1,t=this.nextToken(),n=this.getTokenRaw(t),e=this.finalize(r,new a.Literal("true"===t.value,n));break;case 5:this.context.isAssignmentTarget=!1,this.context.isBindingElement=!1,t=this.nextToken(),n=this.getTokenRaw(t),e=this.finalize(r,new a.Literal(null,n));break;case 10:e=this.parseTemplateLiteral();break;case 7:switch(this.lookahead.value){case"(":this.context.isBindingElement=!1,e=this.inheritCoverGrammar(this.parseGroupExpression);break;case"[":e=this.inheritCoverGrammar(this.parseArrayInitializer);break;case"{":e=this.inheritCoverGrammar(this.parseObjectInitializer);break;case"/":case"/=":this.context.isAssignmentTarget=!1,this.context.isBindingElement=!1,this.scanner.index=this.startMarker.index,t=this.nextRegexToken(),n=this.getTokenRaw(t),e=this.finalize(r,new a.RegexLiteral(t.regex,n,t.pattern,t.flags));break;default:e=this.throwUnexpectedToken(this.nextToken())}break;case 4:!this.context.strict&&this.context.allowYield&&this.matchKeyword("yield")?e=this.parseIdentifierName():!this.context.strict&&this.matchKeyword("let")?e=this.finalize(r,new a.Identifier(this.nextToken().value)):(this.context.isAssignmentTarget=!1,this.context.isBindingElement=!1,this.matchKeyword("function")?e=this.parseFunctionExpression():this.matchKeyword("this")?(this.nextToken(),e=this.finalize(r,new a.ThisExpression)):e=this.matchKeyword("class")?this.parseClassExpression():this.throwUnexpectedToken(this.nextToken()));break;default:e=this.throwUnexpectedToken(this.nextToken())}return e},e.prototype.parseSpreadElement=function(){var e=this.createNode();this.expect("...");var t=this.inheritCoverGrammar(this.parseAssignmentExpression);return this.finalize(e,new a.SpreadElement(t))},e.prototype.parseArrayInitializer=function(){var e=this.createNode(),t=[];for(this.expect("[");!this.match("]");)if(this.match(","))this.nextToken(),t.push(null);else if(this.match("...")){var n=this.parseSpreadElement();this.match("]")||(this.context.isAssignmentTarget=!1,this.context.isBindingElement=!1,this.expect(",")),t.push(n)}else t.push(this.inheritCoverGrammar(this.parseAssignmentExpression)),this.match("]")||this.expect(",");return this.expect("]"),this.finalize(e,new a.ArrayExpression(t))},e.prototype.parsePropertyMethod=function(e){this.context.isAssignmentTarget=!1,this.context.isBindingElement=!1;var t=this.context.strict,n=this.context.allowStrictDirective;this.context.allowStrictDirective=e.simple;var r=this.isolateCoverGrammar(this.parseFunctionSourceElements);return this.context.strict&&e.firstRestricted&&this.tolerateUnexpectedToken(e.firstRestricted,e.message),this.context.strict&&e.stricted&&this.tolerateUnexpectedToken(e.stricted,e.message),this.context.strict=t,this.context.allowStrictDirective=n,r},e.prototype.parsePropertyMethodFunction=function(){var e=!1,t=this.createNode(),n=this.context.allowYield;this.context.allowYield=!0;var r=this.parseFormalParameters(),i=this.parsePropertyMethod(r);return this.context.allowYield=n,this.finalize(t,new a.FunctionExpression(null,r.params,i,e))},e.prototype.parsePropertyMethodAsyncFunction=function(){var e=this.createNode(),t=this.context.allowYield,n=this.context.await;this.context.allowYield=!1,this.context.await=!0;var r=this.parseFormalParameters(),i=this.parsePropertyMethod(r);return this.context.allowYield=t,this.context.await=n,this.finalize(e,new a.AsyncFunctionExpression(null,r.params,i))},e.prototype.parseObjectPropertyKey=function(){var e,t=this.createNode(),n=this.nextToken();switch(n.type){case 8:case 6:this.context.strict&&n.octal&&this.tolerateUnexpectedToken(n,o.Messages.StrictOctalLiteral);var r=this.getTokenRaw(n);e=this.finalize(t,new a.Literal(n.value,r));break;case 3:case 1:case 5:case 4:e=this.finalize(t,new a.Identifier(n.value));break;case 7:"["===n.value?(e=this.isolateCoverGrammar(this.parseAssignmentExpression),this.expect("]")):e=this.throwUnexpectedToken(n);break;default:e=this.throwUnexpectedToken(n)}return e},e.prototype.isPropertyKey=function(e,t){return e.type===u.Syntax.Identifier&&e.name===t||e.type===u.Syntax.Literal&&e.value===t},e.prototype.parseObjectProperty=function(e){var t,n=this.createNode(),r=this.lookahead,i=null,s=null,u=!1,c=!1,l=!1,f=!1;if(3===r.type){var d=r.value;this.nextToken(),u=this.match("["),i=(f=!this.hasLineTerminator&&"async"===d&&!this.match(":")&&!this.match("(")&&!this.match("*")&&!this.match(","))?this.parseObjectPropertyKey():this.finalize(n,new a.Identifier(d))}else this.match("*")?this.nextToken():(u=this.match("["),i=this.parseObjectPropertyKey());var p=this.qualifiedPropertyName(this.lookahead);if(3===r.type&&!f&&"get"===r.value&&p)t="get",u=this.match("["),i=this.parseObjectPropertyKey(),this.context.allowYield=!1,s=this.parseGetterMethod();else if(3===r.type&&!f&&"set"===r.value&&p)t="set",u=this.match("["),i=this.parseObjectPropertyKey(),s=this.parseSetterMethod();else if(7===r.type&&"*"===r.value&&p)t="init",u=this.match("["),i=this.parseObjectPropertyKey(),s=this.parseGeneratorMethod(),c=!0;else if(i||this.throwUnexpectedToken(this.lookahead),t="init",this.match(":")&&!f)!u&&this.isPropertyKey(i,"__proto__")&&(e.value&&this.tolerateError(o.Messages.DuplicateProtoProperty),e.value=!0),this.nextToken(),s=this.inheritCoverGrammar(this.parseAssignmentExpression);else if(this.match("("))s=f?this.parsePropertyMethodAsyncFunction():this.parsePropertyMethodFunction(),c=!0;else if(3===r.type){var d=this.finalize(n,new a.Identifier(r.value));if(this.match("=")){this.context.firstCoverInitializedNameError=this.lookahead,this.nextToken(),l=!0;var h=this.isolateCoverGrammar(this.parseAssignmentExpression);s=this.finalize(n,new a.AssignmentPattern(d,h))}else l=!0,s=d}else this.throwUnexpectedToken(this.nextToken());return this.finalize(n,new a.Property(t,i,u,s,c,l))},e.prototype.parseObjectInitializer=function(){var e=this.createNode();this.expect("{");for(var t=[],n={value:!1};!this.match("}");)t.push(this.parseObjectProperty(n)),this.match("}")||this.expectCommaSeparator();return this.expect("}"),this.finalize(e,new a.ObjectExpression(t))},e.prototype.parseTemplateHead=function(){r.assert(this.lookahead.head,"Template literal must start with a template head");var e=this.createNode(),t=this.nextToken(),n=t.value,i=t.cooked;return this.finalize(e,new a.TemplateElement({raw:n,cooked:i},t.tail))},e.prototype.parseTemplateElement=function(){10!==this.lookahead.type&&this.throwUnexpectedToken();var e=this.createNode(),t=this.nextToken(),n=t.value,r=t.cooked;return this.finalize(e,new a.TemplateElement({raw:n,cooked:r},t.tail))},e.prototype.parseTemplateLiteral=function(){var e=this.createNode(),t=[],n=[],r=this.parseTemplateHead();for(n.push(r);!r.tail;)t.push(this.parseExpression()),r=this.parseTemplateElement(),n.push(r);return this.finalize(e,new a.TemplateLiteral(n,t))},e.prototype.reinterpretExpressionAsPattern=function(e){switch(e.type){case u.Syntax.Identifier:case u.Syntax.MemberExpression:case u.Syntax.RestElement:case u.Syntax.AssignmentPattern:break;case u.Syntax.SpreadElement:e.type=u.Syntax.RestElement,this.reinterpretExpressionAsPattern(e.argument);break;case u.Syntax.ArrayExpression:e.type=u.Syntax.ArrayPattern;for(var t=0;t")||this.expect("=>"),e={type:l,params:[],async:!1};else{var t=this.lookahead,n=[];if(this.match("..."))e=this.parseRestElement(n),this.expect(")"),this.match("=>")||this.expect("=>"),e={type:l,params:[e],async:!1};else{var r=!1;if(this.context.isBindingElement=!0,e=this.inheritCoverGrammar(this.parseAssignmentExpression),this.match(",")){var i=[];for(this.context.isAssignmentTarget=!1,i.push(e);2!==this.lookahead.type&&this.match(",");){if(this.nextToken(),this.match(")")){this.nextToken();for(var o=0;o")||this.expect("=>"),this.context.isBindingElement=!1;for(var o=0;o")&&(e.type===u.Syntax.Identifier&&"yield"===e.name&&(r=!0,e={type:l,params:[e],async:!1}),!r)){if(this.context.isBindingElement||this.throwUnexpectedToken(this.lookahead),e.type===u.Syntax.SequenceExpression)for(var o=0;o")){for(var u=0;u0){this.nextToken(),this.context.isAssignmentTarget=!1,this.context.isBindingElement=!1;for(var i=[e,this.lookahead],o=t,s=this.isolateCoverGrammar(this.parseExponentiationExpression),u=[o,n.value,s],c=[r];!((r=this.binaryPrecedence(this.lookahead))<=0);){for(;u.length>2&&r<=c[c.length-1];){s=u.pop();var l=u.pop();c.pop(),o=u.pop(),i.pop();var f=this.startNode(i[i.length-1]);u.push(this.finalize(f,new a.BinaryExpression(l,o,s)))}u.push(this.nextToken().value),c.push(r),i.push(this.lookahead),u.push(this.isolateCoverGrammar(this.parseExponentiationExpression))}var d=u.length-1;t=u[d];for(var p=i.pop();d>1;){var h=i.pop(),m=p&&p.lineStart,f=this.startNode(h,m),l=u[d-1];t=this.finalize(f,new a.BinaryExpression(l,u[d-2],t)),d-=2,p=h}}return t},e.prototype.parseConditionalExpression=function(){var e=this.lookahead,t=this.inheritCoverGrammar(this.parseBinaryExpression);if(this.match("?")){this.nextToken();var n=this.context.allowIn;this.context.allowIn=!0;var r=this.isolateCoverGrammar(this.parseAssignmentExpression);this.context.allowIn=n,this.expect(":");var i=this.isolateCoverGrammar(this.parseAssignmentExpression);t=this.finalize(this.startNode(e),new a.ConditionalExpression(t,r,i)),this.context.isAssignmentTarget=!1,this.context.isBindingElement=!1}return t},e.prototype.checkPatternParam=function(e,t){switch(t.type){case u.Syntax.Identifier:this.validateParam(e,t,t.name);break;case u.Syntax.RestElement:this.checkPatternParam(e,t.argument);break;case u.Syntax.AssignmentPattern:this.checkPatternParam(e,t.left);break;case u.Syntax.ArrayPattern:for(var n=0;n")){this.context.isAssignmentTarget=!1,this.context.isBindingElement=!1;var i=e.async,s=this.reinterpretAsCoverFormalsList(e);if(s){this.hasLineTerminator&&this.tolerateUnexpectedToken(this.lookahead),this.context.firstCoverInitializedNameError=null;var c=this.context.strict,f=this.context.allowStrictDirective;this.context.allowStrictDirective=s.simple;var d=this.context.allowYield,p=this.context.await;this.context.allowYield=!0,this.context.await=i;var h=this.startNode(t);this.expect("=>");var m=void 0;if(this.match("{")){var v=this.context.allowIn;this.context.allowIn=!0,m=this.parseFunctionSourceElements(),this.context.allowIn=v}else m=this.isolateCoverGrammar(this.parseAssignmentExpression);var g=m.type!==u.Syntax.BlockStatement;this.context.strict&&s.firstRestricted&&this.throwUnexpectedToken(s.firstRestricted,s.message),this.context.strict&&s.stricted&&this.tolerateUnexpectedToken(s.stricted,s.message),e=i?this.finalize(h,new a.AsyncArrowFunctionExpression(s.params,m,g)):this.finalize(h,new a.ArrowFunctionExpression(s.params,m,g)),this.context.strict=c,this.context.allowStrictDirective=f,this.context.allowYield=d,this.context.await=p}}else if(this.matchAssign()){if(this.context.isAssignmentTarget||this.tolerateError(o.Messages.InvalidLHSInAssignment),this.context.strict&&e.type===u.Syntax.Identifier){var y=e;this.scanner.isRestrictedWord(y.name)&&this.tolerateUnexpectedToken(n,o.Messages.StrictLHSAssignment),this.scanner.isStrictModeReservedWord(y.name)&&this.tolerateUnexpectedToken(n,o.Messages.StrictReservedWord)}this.match("=")?this.reinterpretExpressionAsPattern(e):(this.context.isAssignmentTarget=!1,this.context.isBindingElement=!1);var b=(n=this.nextToken()).value,E=this.isolateCoverGrammar(this.parseAssignmentExpression);e=this.finalize(this.startNode(t),new a.AssignmentExpression(b,e,E)),this.context.firstCoverInitializedNameError=null}}return e},e.prototype.parseExpression=function(){var e=this.lookahead,t=this.isolateCoverGrammar(this.parseAssignmentExpression);if(this.match(",")){var n=[];for(n.push(t);2!==this.lookahead.type&&this.match(",");)this.nextToken(),n.push(this.isolateCoverGrammar(this.parseAssignmentExpression));t=this.finalize(this.startNode(e),new a.SequenceExpression(n))}return t},e.prototype.parseStatementListItem=function(){var e;if(this.context.isAssignmentTarget=!0,this.context.isBindingElement=!0,4===this.lookahead.type)switch(this.lookahead.value){case"export":this.context.isModule||this.tolerateUnexpectedToken(this.lookahead,o.Messages.IllegalExportDeclaration),e=this.parseExportDeclaration();break;case"import":this.context.isModule||this.tolerateUnexpectedToken(this.lookahead,o.Messages.IllegalImportDeclaration),e=this.parseImportDeclaration();break;case"const":e=this.parseLexicalDeclaration({inFor:!1});break;case"function":e=this.parseFunctionDeclaration();break;case"class":e=this.parseClassDeclaration();break;case"let":e=this.isLexicalDeclaration()?this.parseLexicalDeclaration({inFor:!1}):this.parseStatement();break;default:e=this.parseStatement()}else e=this.parseStatement();return e},e.prototype.parseBlock=function(){var e=this.createNode();this.expect("{");for(var t=[];!this.match("}");)t.push(this.parseStatementListItem());return this.expect("}"),this.finalize(e,new a.BlockStatement(t))},e.prototype.parseLexicalBinding=function(e,t){var n=this.createNode(),r=[],i=this.parsePattern(r,e);this.context.strict&&i.type===u.Syntax.Identifier&&this.scanner.isRestrictedWord(i.name)&&this.tolerateError(o.Messages.StrictVarName);var s=null;return"const"===e?this.matchKeyword("in")||this.matchContextualKeyword("of")||(this.match("=")?(this.nextToken(),s=this.isolateCoverGrammar(this.parseAssignmentExpression)):this.throwError(o.Messages.DeclarationMissingInitializer,"const")):(!t.inFor&&i.type!==u.Syntax.Identifier||this.match("="))&&(this.expect("="),s=this.isolateCoverGrammar(this.parseAssignmentExpression)),this.finalize(n,new a.VariableDeclarator(i,s))},e.prototype.parseBindingList=function(e,t){for(var n=[this.parseLexicalBinding(e,t)];this.match(",");)this.nextToken(),n.push(this.parseLexicalBinding(e,t));return n},e.prototype.isLexicalDeclaration=function(){var e=this.scanner.saveState();this.scanner.scanComments();var t=this.scanner.lex();return this.scanner.restoreState(e),3===t.type||7===t.type&&"["===t.value||7===t.type&&"{"===t.value||4===t.type&&"let"===t.value||4===t.type&&"yield"===t.value},e.prototype.parseLexicalDeclaration=function(e){var t=this.createNode(),n=this.nextToken().value;r.assert("let"===n||"const"===n,"Lexical declaration must be either let or const");var i=this.parseBindingList(n,e);return this.consumeSemicolon(),this.finalize(t,new a.VariableDeclaration(i,n))},e.prototype.parseBindingRestElement=function(e,t){var n=this.createNode();this.expect("...");var r=this.parsePattern(e,t);return this.finalize(n,new a.RestElement(r))},e.prototype.parseArrayPattern=function(e,t){var n=this.createNode();this.expect("[");for(var r=[];!this.match("]");)if(this.match(","))this.nextToken(),r.push(null);else{if(this.match("...")){r.push(this.parseBindingRestElement(e,t));break}r.push(this.parsePatternWithDefault(e,t)),this.match("]")||this.expect(",")}return this.expect("]"),this.finalize(n,new a.ArrayPattern(r))},e.prototype.parsePropertyPattern=function(e,t){var n,r,i=this.createNode(),o=!1,s=!1,u=!1;if(3===this.lookahead.type){var c=this.lookahead;n=this.parseVariableIdentifier();var l=this.finalize(i,new a.Identifier(c.value));if(this.match("=")){e.push(c),s=!0,this.nextToken();var f=this.parseAssignmentExpression();r=this.finalize(this.startNode(c),new a.AssignmentPattern(l,f))}else this.match(":")?(this.expect(":"),r=this.parsePatternWithDefault(e,t)):(e.push(c),s=!0,r=l)}else o=this.match("["),n=this.parseObjectPropertyKey(),this.expect(":"),r=this.parsePatternWithDefault(e,t);return this.finalize(i,new a.Property("init",n,o,r,u,s))},e.prototype.parseObjectPattern=function(e,t){var n=this.createNode(),r=[];for(this.expect("{");!this.match("}");)r.push(this.parsePropertyPattern(e,t)),this.match("}")||this.expect(",");return this.expect("}"),this.finalize(n,new a.ObjectPattern(r))},e.prototype.parsePattern=function(e,t){var n;return this.match("[")?n=this.parseArrayPattern(e,t):this.match("{")?n=this.parseObjectPattern(e,t):(this.matchKeyword("let")&&("const"===t||"let"===t)&&this.tolerateUnexpectedToken(this.lookahead,o.Messages.LetInLexicalBinding),e.push(this.lookahead),n=this.parseVariableIdentifier(t)),n},e.prototype.parsePatternWithDefault=function(e,t){var n=this.lookahead,r=this.parsePattern(e,t);if(this.match("=")){this.nextToken();var i=this.context.allowYield;this.context.allowYield=!0;var o=this.isolateCoverGrammar(this.parseAssignmentExpression);this.context.allowYield=i,r=this.finalize(this.startNode(n),new a.AssignmentPattern(r,o))}return r},e.prototype.parseVariableIdentifier=function(e){var t=this.createNode(),n=this.nextToken();return 4===n.type&&"yield"===n.value?this.context.strict?this.tolerateUnexpectedToken(n,o.Messages.StrictReservedWord):this.context.allowYield||this.throwUnexpectedToken(n):3!==n.type?this.context.strict&&4===n.type&&this.scanner.isStrictModeReservedWord(n.value)?this.tolerateUnexpectedToken(n,o.Messages.StrictReservedWord):(this.context.strict||"let"!==n.value||"var"!==e)&&this.throwUnexpectedToken(n):(this.context.isModule||this.context.await)&&3===n.type&&"await"===n.value&&this.tolerateUnexpectedToken(n),this.finalize(t,new a.Identifier(n.value))},e.prototype.parseVariableDeclaration=function(e){var t=this.createNode(),n=[],r=this.parsePattern(n,"var");this.context.strict&&r.type===u.Syntax.Identifier&&this.scanner.isRestrictedWord(r.name)&&this.tolerateError(o.Messages.StrictVarName);var i=null;return this.match("=")?(this.nextToken(),i=this.isolateCoverGrammar(this.parseAssignmentExpression)):r.type===u.Syntax.Identifier||e.inFor||this.expect("="),this.finalize(t,new a.VariableDeclarator(r,i))},e.prototype.parseVariableDeclarationList=function(e){var t={inFor:e.inFor},n=[];for(n.push(this.parseVariableDeclaration(t));this.match(",");)this.nextToken(),n.push(this.parseVariableDeclaration(t));return n},e.prototype.parseVariableStatement=function(){var e=this.createNode();this.expectKeyword("var");var t=this.parseVariableDeclarationList({inFor:!1});return this.consumeSemicolon(),this.finalize(e,new a.VariableDeclaration(t,"var"))},e.prototype.parseEmptyStatement=function(){var e=this.createNode();return this.expect(";"),this.finalize(e,new a.EmptyStatement)},e.prototype.parseExpressionStatement=function(){var e=this.createNode(),t=this.parseExpression();return this.consumeSemicolon(),this.finalize(e,new a.ExpressionStatement(t))},e.prototype.parseIfClause=function(){return this.context.strict&&this.matchKeyword("function")&&this.tolerateError(o.Messages.StrictFunction),this.parseStatement()},e.prototype.parseIfStatement=function(){var e,t=this.createNode(),n=null;this.expectKeyword("if"),this.expect("(");var r=this.parseExpression();return!this.match(")")&&this.config.tolerant?(this.tolerateUnexpectedToken(this.nextToken()),e=this.finalize(this.createNode(),new a.EmptyStatement)):(this.expect(")"),e=this.parseIfClause(),this.matchKeyword("else")&&(this.nextToken(),n=this.parseIfClause())),this.finalize(t,new a.IfStatement(r,e,n))},e.prototype.parseDoWhileStatement=function(){var e=this.createNode();this.expectKeyword("do");var t=this.context.inIteration;this.context.inIteration=!0;var n=this.parseStatement();this.context.inIteration=t,this.expectKeyword("while"),this.expect("(");var r=this.parseExpression();return!this.match(")")&&this.config.tolerant?this.tolerateUnexpectedToken(this.nextToken()):(this.expect(")"),this.match(";")&&this.nextToken()),this.finalize(e,new a.DoWhileStatement(n,r))},e.prototype.parseWhileStatement=function(){var e,t=this.createNode();this.expectKeyword("while"),this.expect("(");var n=this.parseExpression();if(!this.match(")")&&this.config.tolerant)this.tolerateUnexpectedToken(this.nextToken()),e=this.finalize(this.createNode(),new a.EmptyStatement);else{this.expect(")");var r=this.context.inIteration;this.context.inIteration=!0,e=this.parseStatement(),this.context.inIteration=r}return this.finalize(t,new a.WhileStatement(n,e))},e.prototype.parseForStatement=function(){var e,t,n,r=null,i=null,s=null,c=!0,l=this.createNode();if(this.expectKeyword("for"),this.expect("("),this.match(";"))this.nextToken();else if(this.matchKeyword("var")){r=this.createNode(),this.nextToken();var f=this.context.allowIn;this.context.allowIn=!1;var d=this.parseVariableDeclarationList({inFor:!0});if(this.context.allowIn=f,1===d.length&&this.matchKeyword("in")){var p=d[0];p.init&&(p.id.type===u.Syntax.ArrayPattern||p.id.type===u.Syntax.ObjectPattern||this.context.strict)&&this.tolerateError(o.Messages.ForInOfLoopInitializer,"for-in"),r=this.finalize(r,new a.VariableDeclaration(d,"var")),this.nextToken(),e=r,t=this.parseExpression(),r=null}else 1===d.length&&null===d[0].init&&this.matchContextualKeyword("of")?(r=this.finalize(r,new a.VariableDeclaration(d,"var")),this.nextToken(),e=r,t=this.parseAssignmentExpression(),r=null,c=!1):(r=this.finalize(r,new a.VariableDeclaration(d,"var")),this.expect(";"))}else if(this.matchKeyword("const")||this.matchKeyword("let")){r=this.createNode();var h=this.nextToken().value;if(this.context.strict||"in"!==this.lookahead.value){var f=this.context.allowIn;this.context.allowIn=!1;var d=this.parseBindingList(h,{inFor:!0});this.context.allowIn=f,1===d.length&&null===d[0].init&&this.matchKeyword("in")?(r=this.finalize(r,new a.VariableDeclaration(d,h)),this.nextToken(),e=r,t=this.parseExpression(),r=null):1===d.length&&null===d[0].init&&this.matchContextualKeyword("of")?(r=this.finalize(r,new a.VariableDeclaration(d,h)),this.nextToken(),e=r,t=this.parseAssignmentExpression(),r=null,c=!1):(this.consumeSemicolon(),r=this.finalize(r,new a.VariableDeclaration(d,h)))}else r=this.finalize(r,new a.Identifier(h)),this.nextToken(),e=r,t=this.parseExpression(),r=null}else{var m=this.lookahead,f=this.context.allowIn;if(this.context.allowIn=!1,r=this.inheritCoverGrammar(this.parseAssignmentExpression),this.context.allowIn=f,this.matchKeyword("in"))this.context.isAssignmentTarget&&r.type!==u.Syntax.AssignmentExpression||this.tolerateError(o.Messages.InvalidLHSInForIn),this.nextToken(),this.reinterpretExpressionAsPattern(r),e=r,t=this.parseExpression(),r=null;else if(this.matchContextualKeyword("of"))this.context.isAssignmentTarget&&r.type!==u.Syntax.AssignmentExpression||this.tolerateError(o.Messages.InvalidLHSInForLoop),this.nextToken(),this.reinterpretExpressionAsPattern(r),e=r,t=this.parseAssignmentExpression(),r=null,c=!1;else{if(this.match(",")){for(var v=[r];this.match(",");)this.nextToken(),v.push(this.isolateCoverGrammar(this.parseAssignmentExpression));r=this.finalize(this.startNode(m),new a.SequenceExpression(v))}this.expect(";")}}if(void 0!==e||(this.match(";")||(i=this.parseExpression()),this.expect(";"),this.match(")")||(s=this.parseExpression())),!this.match(")")&&this.config.tolerant)this.tolerateUnexpectedToken(this.nextToken()),n=this.finalize(this.createNode(),new a.EmptyStatement);else{this.expect(")");var g=this.context.inIteration;this.context.inIteration=!0,n=this.isolateCoverGrammar(this.parseStatement),this.context.inIteration=g}return void 0===e?this.finalize(l,new a.ForStatement(r,i,s,n)):c?this.finalize(l,new a.ForInStatement(e,t,n)):this.finalize(l,new a.ForOfStatement(e,t,n))},e.prototype.parseContinueStatement=function(){var e=this.createNode();this.expectKeyword("continue");var t=null;if(3===this.lookahead.type&&!this.hasLineTerminator){var n=this.parseVariableIdentifier();t=n;var r="$"+n.name;Object.prototype.hasOwnProperty.call(this.context.labelSet,r)||this.throwError(o.Messages.UnknownLabel,n.name)}return this.consumeSemicolon(),null!==t||this.context.inIteration||this.throwError(o.Messages.IllegalContinue),this.finalize(e,new a.ContinueStatement(t))},e.prototype.parseBreakStatement=function(){var e=this.createNode();this.expectKeyword("break");var t=null;if(3===this.lookahead.type&&!this.hasLineTerminator){var n=this.parseVariableIdentifier(),r="$"+n.name;Object.prototype.hasOwnProperty.call(this.context.labelSet,r)||this.throwError(o.Messages.UnknownLabel,n.name),t=n}return this.consumeSemicolon(),null!==t||this.context.inIteration||this.context.inSwitch||this.throwError(o.Messages.IllegalBreak),this.finalize(e,new a.BreakStatement(t))},e.prototype.parseReturnStatement=function(){this.context.inFunctionBody||this.tolerateError(o.Messages.IllegalReturn);var e=this.createNode();this.expectKeyword("return");var t=(this.match(";")||this.match("}")||this.hasLineTerminator||2===this.lookahead.type)&&8!==this.lookahead.type&&10!==this.lookahead.type?null:this.parseExpression();return this.consumeSemicolon(),this.finalize(e,new a.ReturnStatement(t))},e.prototype.parseWithStatement=function(){this.context.strict&&this.tolerateError(o.Messages.StrictModeWith);var e,t=this.createNode();this.expectKeyword("with"),this.expect("(");var n=this.parseExpression();return!this.match(")")&&this.config.tolerant?(this.tolerateUnexpectedToken(this.nextToken()),e=this.finalize(this.createNode(),new a.EmptyStatement)):(this.expect(")"),e=this.parseStatement()),this.finalize(t,new a.WithStatement(n,e))},e.prototype.parseSwitchCase=function(){var e,t=this.createNode();this.matchKeyword("default")?(this.nextToken(),e=null):(this.expectKeyword("case"),e=this.parseExpression()),this.expect(":");for(var n=[];!(this.match("}")||this.matchKeyword("default")||this.matchKeyword("case"));)n.push(this.parseStatementListItem());return this.finalize(t,new a.SwitchCase(e,n))},e.prototype.parseSwitchStatement=function(){var e=this.createNode();this.expectKeyword("switch"),this.expect("(");var t=this.parseExpression();this.expect(")");var n=this.context.inSwitch;this.context.inSwitch=!0;var r=[],i=!1;for(this.expect("{");!this.match("}");){var s=this.parseSwitchCase();null===s.test&&(i&&this.throwError(o.Messages.MultipleDefaultsInSwitch),i=!0),r.push(s)}return this.expect("}"),this.context.inSwitch=n,this.finalize(e,new a.SwitchStatement(t,r))},e.prototype.parseLabelledStatement=function(){var e,t=this.createNode(),n=this.parseExpression();if(n.type===u.Syntax.Identifier&&this.match(":")){this.nextToken();var r=n,i="$"+r.name;Object.prototype.hasOwnProperty.call(this.context.labelSet,i)&&this.throwError(o.Messages.Redeclaration,"Label",r.name),this.context.labelSet[i]=!0;var s=void 0;if(this.matchKeyword("class"))this.tolerateUnexpectedToken(this.lookahead),s=this.parseClassDeclaration();else if(this.matchKeyword("function")){var c=this.lookahead,l=this.parseFunctionDeclaration();this.context.strict?this.tolerateUnexpectedToken(c,o.Messages.StrictFunction):l.generator&&this.tolerateUnexpectedToken(c,o.Messages.GeneratorInLegacyContext),s=l}else s=this.parseStatement();delete this.context.labelSet[i],e=new a.LabeledStatement(r,s)}else this.consumeSemicolon(),e=new a.ExpressionStatement(n);return this.finalize(t,e)},e.prototype.parseThrowStatement=function(){var e=this.createNode();this.expectKeyword("throw"),this.hasLineTerminator&&this.throwError(o.Messages.NewlineAfterThrow);var t=this.parseExpression();return this.consumeSemicolon(),this.finalize(e,new a.ThrowStatement(t))},e.prototype.parseCatchClause=function(){var e=this.createNode();this.expectKeyword("catch"),this.expect("("),this.match(")")&&this.throwUnexpectedToken(this.lookahead);for(var t=[],n=this.parsePattern(t),r={},i=0;i0&&this.tolerateError(o.Messages.BadGetterArity);var i=this.parsePropertyMethod(r);return this.context.allowYield=n,this.finalize(e,new a.FunctionExpression(null,r.params,i,t))},e.prototype.parseSetterMethod=function(){var e=this.createNode(),t=!1,n=this.context.allowYield;this.context.allowYield=!t;var r=this.parseFormalParameters();1!==r.params.length?this.tolerateError(o.Messages.BadSetterArity):r.params[0]instanceof a.RestElement&&this.tolerateError(o.Messages.BadSetterRestParameter);var i=this.parsePropertyMethod(r);return this.context.allowYield=n,this.finalize(e,new a.FunctionExpression(null,r.params,i,t))},e.prototype.parseGeneratorMethod=function(){var e=this.createNode(),t=!0,n=this.context.allowYield;this.context.allowYield=!0;var r=this.parseFormalParameters();this.context.allowYield=!1;var i=this.parsePropertyMethod(r);return this.context.allowYield=n,this.finalize(e,new a.FunctionExpression(null,r.params,i,t))},e.prototype.isStartOfExpression=function(){var e=!0,t=this.lookahead.value;switch(this.lookahead.type){case 7:e="["===t||"("===t||"{"===t||"+"===t||"-"===t||"!"===t||"~"===t||"++"===t||"--"===t||"/"===t||"/="===t;break;case 4:e="class"===t||"delete"===t||"function"===t||"let"===t||"new"===t||"super"===t||"this"===t||"typeof"===t||"void"===t||"yield"===t}return e},e.prototype.parseYieldExpression=function(){var e=this.createNode();this.expectKeyword("yield");var t=null,n=!1;if(!this.hasLineTerminator){var r=this.context.allowYield;this.context.allowYield=!1,(n=this.match("*"))?(this.nextToken(),t=this.parseAssignmentExpression()):this.isStartOfExpression()&&(t=this.parseAssignmentExpression()),this.context.allowYield=r}return this.finalize(e,new a.YieldExpression(t,n))},e.prototype.parseClassElement=function(e){var t=this.lookahead,n=this.createNode(),r="",i=null,s=null,u=!1,c=!1,l=!1,f=!1;if(this.match("*"))this.nextToken();else if(u=this.match("["),"static"===(i=this.parseObjectPropertyKey()).name&&(this.qualifiedPropertyName(this.lookahead)||this.match("*"))&&(t=this.lookahead,l=!0,u=this.match("["),this.match("*")?this.nextToken():i=this.parseObjectPropertyKey()),3===t.type&&!this.hasLineTerminator&&"async"===t.value){var d=this.lookahead.value;":"!==d&&"("!==d&&"*"!==d&&(f=!0,t=this.lookahead,i=this.parseObjectPropertyKey(),3===t.type&&"constructor"===t.value&&this.tolerateUnexpectedToken(t,o.Messages.ConstructorIsAsync))}var p=this.qualifiedPropertyName(this.lookahead);return 3===t.type?"get"===t.value&&p?(r="get",u=this.match("["),i=this.parseObjectPropertyKey(),this.context.allowYield=!1,s=this.parseGetterMethod()):"set"===t.value&&p&&(r="set",u=this.match("["),i=this.parseObjectPropertyKey(),s=this.parseSetterMethod()):7===t.type&&"*"===t.value&&p&&(r="init",u=this.match("["),i=this.parseObjectPropertyKey(),s=this.parseGeneratorMethod(),c=!0),!r&&i&&this.match("(")&&(r="init",s=f?this.parsePropertyMethodAsyncFunction():this.parsePropertyMethodFunction(),c=!0),r||this.throwUnexpectedToken(this.lookahead),"init"===r&&(r="method"),!u&&(l&&this.isPropertyKey(i,"prototype")&&this.throwUnexpectedToken(t,o.Messages.StaticPrototype),!l&&this.isPropertyKey(i,"constructor")&&(("method"!==r||!c||s&&s.generator)&&this.throwUnexpectedToken(t,o.Messages.ConstructorSpecialMethod),e.value?this.throwUnexpectedToken(t,o.Messages.DuplicateConstructor):e.value=!0,r="constructor")),this.finalize(n,new a.MethodDefinition(i,u,s,r,l))},e.prototype.parseClassElementList=function(){var e=[],t={value:!1};for(this.expect("{");!this.match("}");)this.match(";")?this.nextToken():e.push(this.parseClassElement(t));return this.expect("}"),e},e.prototype.parseClassBody=function(){var e=this.createNode(),t=this.parseClassElementList();return this.finalize(e,new a.ClassBody(t))},e.prototype.parseClassDeclaration=function(e){var t=this.createNode(),n=this.context.strict;this.context.strict=!0,this.expectKeyword("class");var r=e&&3!==this.lookahead.type?null:this.parseVariableIdentifier(),i=null;this.matchKeyword("extends")&&(this.nextToken(),i=this.isolateCoverGrammar(this.parseLeftHandSideExpressionAllowCall));var o=this.parseClassBody();return this.context.strict=n,this.finalize(t,new a.ClassDeclaration(r,i,o))},e.prototype.parseClassExpression=function(){var e=this.createNode(),t=this.context.strict;this.context.strict=!0,this.expectKeyword("class");var n=3===this.lookahead.type?this.parseVariableIdentifier():null,r=null;this.matchKeyword("extends")&&(this.nextToken(),r=this.isolateCoverGrammar(this.parseLeftHandSideExpressionAllowCall));var i=this.parseClassBody();return this.context.strict=t,this.finalize(e,new a.ClassExpression(n,r,i))},e.prototype.parseModule=function(){this.context.strict=!0,this.context.isModule=!0,this.scanner.isModule=!0;for(var e=this.createNode(),t=this.parseDirectivePrologues();2!==this.lookahead.type;)t.push(this.parseStatementListItem());return this.finalize(e,new a.Module(t))},e.prototype.parseScript=function(){for(var e=this.createNode(),t=this.parseDirectivePrologues();2!==this.lookahead.type;)t.push(this.parseStatementListItem());return this.finalize(e,new a.Script(t))},e.prototype.parseModuleSpecifier=function(){var e=this.createNode();8!==this.lookahead.type&&this.throwError(o.Messages.InvalidModuleSpecifier);var t=this.nextToken(),n=this.getTokenRaw(t);return this.finalize(e,new a.Literal(t.value,n))},e.prototype.parseImportSpecifier=function(){var e,t,n=this.createNode();return 3===this.lookahead.type?(t=e=this.parseVariableIdentifier(),this.matchContextualKeyword("as")&&(this.nextToken(),t=this.parseVariableIdentifier())):(t=e=this.parseIdentifierName(),this.matchContextualKeyword("as")?(this.nextToken(),t=this.parseVariableIdentifier()):this.throwUnexpectedToken(this.nextToken())),this.finalize(n,new a.ImportSpecifier(t,e))},e.prototype.parseNamedImports=function(){this.expect("{");for(var e=[];!this.match("}");)e.push(this.parseImportSpecifier()),this.match("}")||this.expect(",");return this.expect("}"),e},e.prototype.parseImportDefaultSpecifier=function(){var e=this.createNode(),t=this.parseIdentifierName();return this.finalize(e,new a.ImportDefaultSpecifier(t))},e.prototype.parseImportNamespaceSpecifier=function(){var e=this.createNode();this.expect("*"),this.matchContextualKeyword("as")||this.throwError(o.Messages.NoAsAfterImportNamespace),this.nextToken();var t=this.parseIdentifierName();return this.finalize(e,new a.ImportNamespaceSpecifier(t))},e.prototype.parseImportDeclaration=function(){this.context.inFunctionBody&&this.throwError(o.Messages.IllegalImportDeclaration);var e,t=this.createNode();this.expectKeyword("import");var n=[];if(8===this.lookahead.type)e=this.parseModuleSpecifier();else{if(this.match("{")?n=n.concat(this.parseNamedImports()):this.match("*")?n.push(this.parseImportNamespaceSpecifier()):this.isIdentifierName(this.lookahead)&&!this.matchKeyword("default")?(n.push(this.parseImportDefaultSpecifier()),this.match(",")&&(this.nextToken(),this.match("*")?n.push(this.parseImportNamespaceSpecifier()):this.match("{")?n=n.concat(this.parseNamedImports()):this.throwUnexpectedToken(this.lookahead))):this.throwUnexpectedToken(this.nextToken()),!this.matchContextualKeyword("from")){var r=this.lookahead.value?o.Messages.UnexpectedToken:o.Messages.MissingFromClause;this.throwError(r,this.lookahead.value)}this.nextToken(),e=this.parseModuleSpecifier()}return this.consumeSemicolon(),this.finalize(t,new a.ImportDeclaration(n,e))},e.prototype.parseExportSpecifier=function(){var e=this.createNode(),t=this.parseIdentifierName(),n=t;return this.matchContextualKeyword("as")&&(this.nextToken(),n=this.parseIdentifierName()),this.finalize(e,new a.ExportSpecifier(t,n))},e.prototype.parseExportDeclaration=function(){this.context.inFunctionBody&&this.throwError(o.Messages.IllegalExportDeclaration);var e,t=this.createNode();if(this.expectKeyword("export"),this.matchKeyword("default")){if(this.nextToken(),this.matchKeyword("function")){var n=this.parseFunctionDeclaration(!0);e=this.finalize(t,new a.ExportDefaultDeclaration(n))}else if(this.matchKeyword("class")){var n=this.parseClassDeclaration(!0);e=this.finalize(t,new a.ExportDefaultDeclaration(n))}else if(this.matchContextualKeyword("async")){var n=this.matchAsyncFunction()?this.parseFunctionDeclaration(!0):this.parseAssignmentExpression();e=this.finalize(t,new a.ExportDefaultDeclaration(n))}else{this.matchContextualKeyword("from")&&this.throwError(o.Messages.UnexpectedToken,this.lookahead.value);var n=this.match("{")?this.parseObjectInitializer():this.match("[")?this.parseArrayInitializer():this.parseAssignmentExpression();this.consumeSemicolon(),e=this.finalize(t,new a.ExportDefaultDeclaration(n))}}else if(this.match("*")){if(this.nextToken(),!this.matchContextualKeyword("from")){var r=this.lookahead.value?o.Messages.UnexpectedToken:o.Messages.MissingFromClause;this.throwError(r,this.lookahead.value)}this.nextToken();var i=this.parseModuleSpecifier();this.consumeSemicolon(),e=this.finalize(t,new a.ExportAllDeclaration(i))}else if(4===this.lookahead.type){var n=void 0;switch(this.lookahead.value){case"let":case"const":n=this.parseLexicalDeclaration({inFor:!1});break;case"var":case"class":case"function":n=this.parseStatementListItem();break;default:this.throwUnexpectedToken(this.lookahead)}e=this.finalize(t,new a.ExportNamedDeclaration(n,[],null))}else if(this.matchAsyncFunction()){var n=this.parseFunctionDeclaration();e=this.finalize(t,new a.ExportNamedDeclaration(n,[],null))}else{var s=[],u=null,c=!1;for(this.expect("{");!this.match("}");)c=c||this.matchKeyword("default"),s.push(this.parseExportSpecifier()),this.match("}")||this.expect(",");if(this.expect("}"),this.matchContextualKeyword("from"))this.nextToken(),u=this.parseModuleSpecifier(),this.consumeSemicolon();else if(c){var r=this.lookahead.value?o.Messages.UnexpectedToken:o.Messages.MissingFromClause;this.throwError(r,this.lookahead.value)}else this.consumeSemicolon();e=this.finalize(t,new a.ExportNamedDeclaration(null,s,u))}return e},e}();t.Parser=f},function(e,t){"use strict";function n(e,t){if(!e)throw Error("ASSERT: "+t)}Object.defineProperty(t,"__esModule",{value:!0}),t.assert=n},function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n=function(){function e(){this.errors=[],this.tolerant=!1}return e.prototype.recordError=function(e){this.errors.push(e)},e.prototype.tolerate=function(e){if(this.tolerant)this.recordError(e);else throw e},e.prototype.constructError=function(e,t){var n=Error(e);try{throw n}catch(r){Object.create&&Object.defineProperty&&Object.defineProperty(n=Object.create(r),"column",{value:t})}return n},e.prototype.createError=function(e,t,n,r){var i="Line "+t+": "+r,o=this.constructError(i,n);return o.index=e,o.lineNumber=t,o.description=r,o},e.prototype.throwError=function(e,t,n,r){throw this.createError(e,t,n,r)},e.prototype.tolerateError=function(e,t,n,r){var i=this.createError(e,t,n,r);if(this.tolerant)this.recordError(i);else throw i},e}();t.ErrorHandler=n},function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.Messages={BadGetterArity:"Getter must not have any formal parameters",BadSetterArity:"Setter must have exactly one formal parameter",BadSetterRestParameter:"Setter function argument must not be a rest parameter",ConstructorIsAsync:"Class constructor may not be an async method",ConstructorSpecialMethod:"Class constructor may not be an accessor",DeclarationMissingInitializer:"Missing initializer in %0 declaration",DefaultRestParameter:"Unexpected token =",DuplicateBinding:"Duplicate binding %0",DuplicateConstructor:"A class may only have one constructor",DuplicateProtoProperty:"Duplicate __proto__ fields are not allowed in object literals",ForInOfLoopInitializer:"%0 loop variable declaration may not have an initializer",GeneratorInLegacyContext:"Generator declarations are not allowed in legacy contexts",IllegalBreak:"Illegal break statement",IllegalContinue:"Illegal continue statement",IllegalExportDeclaration:"Unexpected token",IllegalImportDeclaration:"Unexpected token",IllegalLanguageModeDirective:"Illegal 'use strict' directive in function with non-simple parameter list",IllegalReturn:"Illegal return statement",InvalidEscapedReservedWord:"Keyword must not contain escaped characters",InvalidHexEscapeSequence:"Invalid hexadecimal escape sequence",InvalidLHSInAssignment:"Invalid left-hand side in assignment",InvalidLHSInForIn:"Invalid left-hand side in for-in",InvalidLHSInForLoop:"Invalid left-hand side in for-loop",InvalidModuleSpecifier:"Unexpected token",InvalidRegExp:"Invalid regular expression",LetInLexicalBinding:"let is disallowed as a lexically bound name",MissingFromClause:"Unexpected token",MultipleDefaultsInSwitch:"More than one default clause in switch statement",NewlineAfterThrow:"Illegal newline after throw",NoAsAfterImportNamespace:"Unexpected token",NoCatchOrFinally:"Missing catch or finally after try",ParameterAfterRestParameter:"Rest parameter must be last formal parameter",Redeclaration:"%0 '%1' has already been declared",StaticPrototype:"Classes may not have static property named prototype",StrictCatchVariable:"Catch variable may not be eval or arguments in strict mode",StrictDelete:"Delete of an unqualified identifier in strict mode.",StrictFunction:"In strict mode code, functions can only be declared at top level or inside a block",StrictFunctionName:"Function name may not be eval or arguments in strict mode",StrictLHSAssignment:"Assignment to eval or arguments is not allowed in strict mode",StrictLHSPostfix:"Postfix increment/decrement may not have eval or arguments operand in strict mode",StrictLHSPrefix:"Prefix increment/decrement may not have eval or arguments operand in strict mode",StrictModeWith:"Strict mode code may not include a with statement",StrictOctalLiteral:"Octal literals are not allowed in strict mode.",StrictParamDupe:"Strict mode function may not have duplicate parameter names",StrictParamName:"Parameter name eval or arguments is not allowed in strict mode",StrictReservedWord:"Use of future reserved word in strict mode",StrictVarName:"Variable name may not be eval or arguments in strict mode",TemplateOctalLiteral:"Octal literals are not allowed in template strings.",UnexpectedEOS:"Unexpected end of input",UnexpectedIdentifier:"Unexpected identifier",UnexpectedNumber:"Unexpected number",UnexpectedReserved:"Unexpected reserved word",UnexpectedString:"Unexpected string",UnexpectedTemplate:"Unexpected quasi %0",UnexpectedToken:"Unexpected token %0",UnexpectedTokenIllegal:"Unexpected token ILLEGAL",UnknownLabel:"Undefined label '%0'",UnterminatedRegExp:"Invalid regular expression: missing /"}},function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var r=n(9),i=n(4),o=n(11);function a(e){return"0123456789abcdef".indexOf(e.toLowerCase())}function s(e){return"01234567".indexOf(e)}var u=function(){function e(e,t){this.source=e,this.errorHandler=t,this.trackComment=!1,this.isModule=!1,this.length=e.length,this.index=0,this.lineNumber=e.length>0?1:0,this.lineStart=0,this.curlyStack=[]}return e.prototype.saveState=function(){return{index:this.index,lineNumber:this.lineNumber,lineStart:this.lineStart}},e.prototype.restoreState=function(e){this.index=e.index,this.lineNumber=e.lineNumber,this.lineStart=e.lineStart},e.prototype.eof=function(){return this.index>=this.length},e.prototype.throwUnexpectedToken=function(e){return void 0===e&&(e=o.Messages.UnexpectedTokenIllegal),this.errorHandler.throwError(this.index,this.lineNumber,this.index-this.lineStart+1,e)},e.prototype.tolerateUnexpectedToken=function(e){void 0===e&&(e=o.Messages.UnexpectedTokenIllegal),this.errorHandler.tolerateError(this.index,this.lineNumber,this.index-this.lineStart+1,e)},e.prototype.skipSingleLineComment=function(e){var t,n,r=[];for(this.trackComment&&(r=[],t=this.index-e,n={start:{line:this.lineNumber,column:this.index-this.lineStart-e},end:{}});!this.eof();){var o=this.source.charCodeAt(this.index);if(++this.index,i.Character.isLineTerminator(o)){if(this.trackComment){n.end={line:this.lineNumber,column:this.index-this.lineStart-1};var a={multiLine:!1,slice:[t+e,this.index-1],range:[t,this.index-1],loc:n};r.push(a)}return 13===o&&10===this.source.charCodeAt(this.index)&&++this.index,++this.lineNumber,this.lineStart=this.index,r}}if(this.trackComment){n.end={line:this.lineNumber,column:this.index-this.lineStart};var a={multiLine:!1,slice:[t+e,this.index],range:[t,this.index],loc:n};r.push(a)}return r},e.prototype.skipMultiLineComment=function(){var e,t,n=[];for(this.trackComment&&(n=[],e=this.index-2,t={start:{line:this.lineNumber,column:this.index-this.lineStart-2},end:{}});!this.eof();){var r=this.source.charCodeAt(this.index);if(i.Character.isLineTerminator(r))13===r&&10===this.source.charCodeAt(this.index+1)&&++this.index,++this.lineNumber,++this.index,this.lineStart=this.index;else if(42===r){if(47===this.source.charCodeAt(this.index+1)){if(this.index+=2,this.trackComment){t.end={line:this.lineNumber,column:this.index-this.lineStart};var o={multiLine:!0,slice:[e+2,this.index-2],range:[e,this.index],loc:t};n.push(o)}return n}++this.index}else++this.index}if(this.trackComment){t.end={line:this.lineNumber,column:this.index-this.lineStart};var o={multiLine:!0,slice:[e+2,this.index],range:[e,this.index],loc:t};n.push(o)}return this.tolerateUnexpectedToken(),n},e.prototype.scanComments=function(){this.trackComment&&(e=[]);for(var e,t=0===this.index;!this.eof();){var n=this.source.charCodeAt(this.index);if(i.Character.isWhiteSpace(n))++this.index;else if(i.Character.isLineTerminator(n))++this.index,13===n&&10===this.source.charCodeAt(this.index)&&++this.index,++this.lineNumber,this.lineStart=this.index,t=!0;else if(47===n){if(47===(n=this.source.charCodeAt(this.index+1))){this.index+=2;var r=this.skipSingleLineComment(2);this.trackComment&&(e=e.concat(r)),t=!0}else if(42===n){this.index+=2;var r=this.skipMultiLineComment();this.trackComment&&(e=e.concat(r))}else break}else if(t&&45===n){if(45===this.source.charCodeAt(this.index+1)&&62===this.source.charCodeAt(this.index+2)){this.index+=3;var r=this.skipSingleLineComment(3);this.trackComment&&(e=e.concat(r))}else break}else if(60!==n||this.isModule)break;else if("!--"===this.source.slice(this.index+1,this.index+4)){this.index+=4;var r=this.skipSingleLineComment(4);this.trackComment&&(e=e.concat(r))}else break}return e},e.prototype.isFutureReservedWord=function(e){switch(e){case"enum":case"export":case"import":case"super":return!0;default:return!1}},e.prototype.isStrictModeReservedWord=function(e){switch(e){case"implements":case"interface":case"package":case"private":case"protected":case"public":case"static":case"yield":case"let":return!0;default:return!1}},e.prototype.isRestrictedWord=function(e){return"eval"===e||"arguments"===e},e.prototype.isKeyword=function(e){switch(e.length){case 2:return"if"===e||"in"===e||"do"===e;case 3:return"var"===e||"for"===e||"new"===e||"try"===e||"let"===e;case 4:return"this"===e||"else"===e||"case"===e||"void"===e||"with"===e||"enum"===e;case 5:return"while"===e||"break"===e||"catch"===e||"throw"===e||"const"===e||"yield"===e||"class"===e||"super"===e;case 6:return"return"===e||"typeof"===e||"delete"===e||"switch"===e||"export"===e||"import"===e;case 7:return"default"===e||"finally"===e||"extends"===e;case 8:return"function"===e||"continue"===e||"debugger"===e;case 10:return"instanceof"===e;default:return!1}},e.prototype.codePointAt=function(e){var t=this.source.charCodeAt(e);if(t>=55296&&t<=56319){var n=this.source.charCodeAt(e+1);n>=56320&&n<=57343&&(t=(t-55296)*1024+n-56320+65536)}return t},e.prototype.scanHexEscape=function(e){for(var t="u"===e?4:2,n=0,r=0;r1114111||"}"!==e)&&this.throwUnexpectedToken(),i.Character.fromCodePoint(t)},e.prototype.getIdentifier=function(){for(var e=this.index++;!this.eof();){var t=this.source.charCodeAt(this.index);if(92===t||t>=55296&&t<57343)return this.index=e,this.getComplexIdentifier();if(i.Character.isIdentifierPart(t))++this.index;else break}return this.source.slice(e,this.index)},e.prototype.getComplexIdentifier=function(){var e,t=this.codePointAt(this.index),n=i.Character.fromCodePoint(t);for(this.index+=n.length,92===t&&(117!==this.source.charCodeAt(this.index)&&this.throwUnexpectedToken(),++this.index,"{"===this.source[this.index]?(++this.index,e=this.scanUnicodeCodePointEscape()):null!==(e=this.scanHexEscape("u"))&&"\\"!==e&&i.Character.isIdentifierStart(e.charCodeAt(0))||this.throwUnexpectedToken(),n=e);!this.eof()&&(t=this.codePointAt(this.index),i.Character.isIdentifierPart(t));)e=i.Character.fromCodePoint(t),n+=e,this.index+=e.length,92===t&&(n=n.substr(0,n.length-1),117!==this.source.charCodeAt(this.index)&&this.throwUnexpectedToken(),++this.index,"{"===this.source[this.index]?(++this.index,e=this.scanUnicodeCodePointEscape()):null!==(e=this.scanHexEscape("u"))&&"\\"!==e&&i.Character.isIdentifierPart(e.charCodeAt(0))||this.throwUnexpectedToken(),n+=e);return n},e.prototype.octalToDecimal=function(e){var t="0"!==e,n=s(e);return!this.eof()&&i.Character.isOctalDigit(this.source.charCodeAt(this.index))&&(t=!0,n=8*n+s(this.source[this.index++]),"0123".indexOf(e)>=0&&!this.eof()&&i.Character.isOctalDigit(this.source.charCodeAt(this.index))&&(n=8*n+s(this.source[this.index++]))),{code:n,octal:t}},e.prototype.scanIdentifier=function(){var e,t=this.index,n=92===this.source.charCodeAt(t)?this.getComplexIdentifier():this.getIdentifier();if(3!=(e=1===n.length?3:this.isKeyword(n)?4:"null"===n?5:"true"===n||"false"===n?1:3)&&t+n.length!==this.index){var r=this.index;this.index=t,this.tolerateUnexpectedToken(o.Messages.InvalidEscapedReservedWord),this.index=r}return{type:e,value:n,lineNumber:this.lineNumber,lineStart:this.lineStart,start:t,end:this.index}},e.prototype.scanPunctuator=function(){var e=this.index,t=this.source[this.index];switch(t){case"(":case"{":"{"===t&&this.curlyStack.push("{"),++this.index;break;case".":++this.index,"."===this.source[this.index]&&"."===this.source[this.index+1]&&(this.index+=2,t="...");break;case"}":++this.index,this.curlyStack.pop();break;case")":case";":case",":case"[":case"]":case":":case"?":case"~":++this.index;break;default:">>>="===(t=this.source.substr(this.index,4))?this.index+=4:"==="===(t=t.substr(0,3))||"!=="===t||">>>"===t||"<<="===t||">>="===t||"**="===t?this.index+=3:"&&"===(t=t.substr(0,2))||"||"===t||"=="===t||"!="===t||"+="===t||"-="===t||"*="===t||"/="===t||"++"===t||"--"===t||"<<"===t||">>"===t||"&="===t||"|="===t||"^="===t||"%="===t||"<="===t||">="===t||"=>"===t||"**"===t?this.index+=2:(t=this.source[this.index],"<>=!+-*%&|^/".indexOf(t)>=0&&++this.index)}return this.index===e&&this.throwUnexpectedToken(),{type:7,value:t,lineNumber:this.lineNumber,lineStart:this.lineStart,start:e,end:this.index}},e.prototype.scanHexLiteral=function(e){for(var t="";!this.eof()&&i.Character.isHexDigit(this.source.charCodeAt(this.index));)t+=this.source[this.index++];return 0===t.length&&this.throwUnexpectedToken(),i.Character.isIdentifierStart(this.source.charCodeAt(this.index))&&this.throwUnexpectedToken(),{type:6,value:parseInt("0x"+t,16),lineNumber:this.lineNumber,lineStart:this.lineStart,start:e,end:this.index}},e.prototype.scanBinaryLiteral=function(e){for(var t,n="";!this.eof()&&("0"===(t=this.source[this.index])||"1"===t);)n+=this.source[this.index++];return 0===n.length&&this.throwUnexpectedToken(),!this.eof()&&(t=this.source.charCodeAt(this.index),(i.Character.isIdentifierStart(t)||i.Character.isDecimalDigit(t))&&this.throwUnexpectedToken()),{type:6,value:parseInt(n,2),lineNumber:this.lineNumber,lineStart:this.lineStart,start:e,end:this.index}},e.prototype.scanOctalLiteral=function(e,t){var n="",r=!1;for(i.Character.isOctalDigit(e.charCodeAt(0))?(r=!0,n="0"+this.source[this.index++]):++this.index;!this.eof()&&i.Character.isOctalDigit(this.source.charCodeAt(this.index));)n+=this.source[this.index++];return r||0!==n.length||this.throwUnexpectedToken(),(i.Character.isIdentifierStart(this.source.charCodeAt(this.index))||i.Character.isDecimalDigit(this.source.charCodeAt(this.index)))&&this.throwUnexpectedToken(),{type:6,value:parseInt(n,8),octal:r,lineNumber:this.lineNumber,lineStart:this.lineStart,start:t,end:this.index}},e.prototype.isImplicitOctalLiteral=function(){for(var e=this.index+1;e=0&&(r=r.replace(/\\u\{([0-9a-fA-F]+)\}|\\u([a-fA-F0-9]{4})/g,function(e,t,r){var a=parseInt(t||r,16);return(a>1114111&&i.throwUnexpectedToken(o.Messages.InvalidRegExp),a<=65535)?String.fromCharCode(a):n}).replace(/[\uD800-\uDBFF][\uDC00-\uDFFF]/g,n));try{RegExp(r)}catch(a){this.throwUnexpectedToken(o.Messages.InvalidRegExp)}try{return RegExp(e,t)}catch(s){return null}},e.prototype.scanRegExpBody=function(){var e=this.source[this.index];r.assert("/"===e,"Regular expression literal must start with a slash");for(var t=this.source[this.index++],n=!1,a=!1;!this.eof();)if(t+=e=this.source[this.index++],"\\"===e)e=this.source[this.index++],i.Character.isLineTerminator(e.charCodeAt(0))&&this.throwUnexpectedToken(o.Messages.UnterminatedRegExp),t+=e;else if(i.Character.isLineTerminator(e.charCodeAt(0)))this.throwUnexpectedToken(o.Messages.UnterminatedRegExp);else if(n)"]"===e&&(n=!1);else{if("/"===e){a=!0;break}"["===e&&(n=!0)}return a||this.throwUnexpectedToken(o.Messages.UnterminatedRegExp),t.substr(1,t.length-2)},e.prototype.scanRegExpFlags=function(){for(var e="",t="";!this.eof();){var n=this.source[this.index];if(!i.Character.isIdentifierPart(n.charCodeAt(0)))break;if(++this.index,"\\"!==n||this.eof())t+=n,e+=n;else if("u"===(n=this.source[this.index])){++this.index;var r=this.index,o=this.scanHexEscape("u");if(null!==o)for(t+=o,e+="\\u";r=55296&&e<57343&&i.Character.isIdentifierStart(this.codePointAt(this.index))?this.scanIdentifier():this.scanPunctuator()},e}();t.Scanner=u},function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.TokenName={},t.TokenName[1]="Boolean",t.TokenName[2]="",t.TokenName[3]="Identifier",t.TokenName[4]="Keyword",t.TokenName[5]="Null",t.TokenName[6]="Numeric",t.TokenName[7]="Punctuator",t.TokenName[8]="String",t.TokenName[9]="RegularExpression",t.TokenName[10]="Template"},function(e,t){"use strict";Object.defineProperty(t,"__esModule",{value:!0}),t.XHTMLEntities={quot:'"',amp:"&",apos:"'",gt:">",nbsp:"\xa0",iexcl:"\xa1",cent:"\xa2",pound:"\xa3",curren:"\xa4",yen:"\xa5",brvbar:"\xa6",sect:"\xa7",uml:"\xa8",copy:"\xa9",ordf:"\xaa",laquo:"\xab",not:"\xac",shy:"\xad",reg:"\xae",macr:"\xaf",deg:"\xb0",plusmn:"\xb1",sup2:"\xb2",sup3:"\xb3",acute:"\xb4",micro:"\xb5",para:"\xb6",middot:"\xb7",cedil:"\xb8",sup1:"\xb9",ordm:"\xba",raquo:"\xbb",frac14:"\xbc",frac12:"\xbd",frac34:"\xbe",iquest:"\xbf",Agrave:"\xc0",Aacute:"\xc1",Acirc:"\xc2",Atilde:"\xc3",Auml:"\xc4",Aring:"\xc5",AElig:"\xc6",Ccedil:"\xc7",Egrave:"\xc8",Eacute:"\xc9",Ecirc:"\xca",Euml:"\xcb",Igrave:"\xcc",Iacute:"\xcd",Icirc:"\xce",Iuml:"\xcf",ETH:"\xd0",Ntilde:"\xd1",Ograve:"\xd2",Oacute:"\xd3",Ocirc:"\xd4",Otilde:"\xd5",Ouml:"\xd6",times:"\xd7",Oslash:"\xd8",Ugrave:"\xd9",Uacute:"\xda",Ucirc:"\xdb",Uuml:"\xdc",Yacute:"\xdd",THORN:"\xde",szlig:"\xdf",agrave:"\xe0",aacute:"\xe1",acirc:"\xe2",atilde:"\xe3",auml:"\xe4",aring:"\xe5",aelig:"\xe6",ccedil:"\xe7",egrave:"\xe8",eacute:"\xe9",ecirc:"\xea",euml:"\xeb",igrave:"\xec",iacute:"\xed",icirc:"\xee",iuml:"\xef",eth:"\xf0",ntilde:"\xf1",ograve:"\xf2",oacute:"\xf3",ocirc:"\xf4",otilde:"\xf5",ouml:"\xf6",divide:"\xf7",oslash:"\xf8",ugrave:"\xf9",uacute:"\xfa",ucirc:"\xfb",uuml:"\xfc",yacute:"\xfd",thorn:"\xfe",yuml:"\xff",OElig:"Œ",oelig:"œ",Scaron:"Š",scaron:"š",Yuml:"Ÿ",fnof:"ƒ",circ:"ˆ",tilde:"˜",Alpha:"Α",Beta:"Β",Gamma:"Γ",Delta:"Δ",Epsilon:"Ε",Zeta:"Ζ",Eta:"Η",Theta:"Θ",Iota:"Ι",Kappa:"Κ",Lambda:"Λ",Mu:"Μ",Nu:"Ν",Xi:"Ξ",Omicron:"Ο",Pi:"Π",Rho:"Ρ",Sigma:"Σ",Tau:"Τ",Upsilon:"Υ",Phi:"Φ",Chi:"Χ",Psi:"Ψ",Omega:"Ω",alpha:"α",beta:"β",gamma:"γ",delta:"δ",epsilon:"ε",zeta:"ζ",eta:"η",theta:"θ",iota:"ι",kappa:"κ",lambda:"λ",mu:"μ",nu:"ν",xi:"ξ",omicron:"ο",pi:"π",rho:"ρ",sigmaf:"ς",sigma:"σ",tau:"τ",upsilon:"υ",phi:"φ",chi:"χ",psi:"ψ",omega:"ω",thetasym:"ϑ",upsih:"ϒ",piv:"ϖ",ensp:" ",emsp:" ",thinsp:" ",zwnj:"",zwj:"",lrm:"",rlm:"",ndash:"–",mdash:"—",lsquo:"‘",rsquo:"’",sbquo:"‚",ldquo:"“",rdquo:"”",bdquo:"„",dagger:"†",Dagger:"‡",bull:"•",hellip:"…",permil:"‰",prime:"′",Prime:"″",lsaquo:"‹",rsaquo:"›",oline:"‾",frasl:"⁄",euro:"€",image:"ℑ",weierp:"℘",real:"ℜ",trade:"™",alefsym:"ℵ",larr:"←",uarr:"↑",rarr:"→",darr:"↓",harr:"↔",crarr:"↵",lArr:"⇐",uArr:"⇑",rArr:"⇒",dArr:"⇓",hArr:"⇔",forall:"∀",part:"∂",exist:"∃",empty:"∅",nabla:"∇",isin:"∈",notin:"∉",ni:"∋",prod:"∏",sum:"∑",minus:"−",lowast:"∗",radic:"√",prop:"∝",infin:"∞",ang:"∠",and:"∧",or:"∨",cap:"∩",cup:"∪",int:"∫",there4:"∴",sim:"∼",cong:"≅",asymp:"≈",ne:"≠",equiv:"≡",le:"≤",ge:"≥",sub:"⊂",sup:"⊃",nsub:"⊄",sube:"⊆",supe:"⊇",oplus:"⊕",otimes:"⊗",perp:"⊥",sdot:"⋅",lceil:"⌈",rceil:"⌉",lfloor:"⌊",rfloor:"⌋",loz:"◊",spades:"♠",clubs:"♣",hearts:"♥",diams:"♦",lang:"⟨",rang:"⟩"}},function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var r=n(10),i=n(12),o=n(13),a=function(){function e(){this.values=[],this.curly=this.paren=-1}return e.prototype.beforeFunctionExpression=function(e){return["(","{","[","in","typeof","instanceof","new","return","case","delete","throw","void","=","+=","-=","*=","**=","/=","%=","<<=",">>=",">>>=","&=","|=","^=",",","+","-","*","**","/","%","++","--","<<",">>",">>>","&","|","^","!","~","&&","||","?",":","===","==",">=","<=","<",">","!=","!=="].indexOf(e)>=0},e.prototype.isRegexStart=function(){var e=this.values[this.values.length-1],t=null!==e;switch(e){case"this":case"]":t=!1;break;case")":var n=this.values[this.paren-1];t="if"===n||"while"===n||"for"===n||"with"===n;break;case"}":if(t=!1,"function"===this.values[this.curly-3]){var r=this.values[this.curly-4];t=!!r&&!this.beforeFunctionExpression(r)}else if("function"===this.values[this.curly-4]){var r=this.values[this.curly-5];t=!r||!this.beforeFunctionExpression(r)}}return t},e.prototype.push=function(e){7===e.type||4===e.type?("{"===e.value?this.curly=this.values.length:"("===e.value&&(this.paren=this.values.length),this.values.push(e.value)):this.values.push(null)},e}(),s=function(){function e(e,t){this.errorHandler=new r.ErrorHandler,this.errorHandler.tolerant=!!t&&"boolean"==typeof t.tolerant&&t.tolerant,this.scanner=new i.Scanner(e,this.errorHandler),this.scanner.trackComment=!!t&&"boolean"==typeof t.comment&&t.comment,this.trackRange=!!t&&"boolean"==typeof t.range&&t.range,this.trackLoc=!!t&&"boolean"==typeof t.loc&&t.loc,this.buffer=[],this.reader=new a}return e.prototype.errors=function(){return this.errorHandler.errors},e.prototype.getNextToken=function(){if(0===this.buffer.length){var e=this.scanner.scanComments();if(this.scanner.trackComment)for(var t=0;t(f=r+1)&&(i=f),i>(f=s[l+1]+1)&&(i=f),s[l]=r;s[l]=i}return i}return a.distance(e,t)}};null!==n.amdD&&n.amdO?void 0!==(r=(function(){return c}).call(t,n,t,e))&&(e.exports=r):null!==e&&void 0!==t&&e.exports===t?e.exports=c:"undefined"!=typeof self&&"function"==typeof self.postMessage&&"function"==typeof self.importScripts?self.Levenshtein=c:"undefined"!=typeof window&&null!==window&&(window.Levenshtein=c)}()},35538:function(e){"use strict";let t=new Uint32Array(65536),n=(e,n)=>{let r=e.length,i=n.length,o=1<{let r=e.length,i=n.length,o=[],a=[],s=Math.ceil(r/32),u=Math.ceil(i/32),c=i;for(let l=0;l>>g&1,E=o[g/32|0]>>>g&1,w=y|d,x=((y|E)&p)+p^p|y|E,_=d|~(x|p),S=p&x;_>>>31^b&&(a[g/32|0]^=1<>>31^E&&(o[g/32|0]^=1<>>N&1,M=o[N/32|0]>>>N&1,F=P|A,R=((P|M)&D)+D^D|P|M,L=A|~(R|D),j=D&R;c+=L>>>i-1&1,c-=j>>>i-1&1,L>>>31^I&&(a[N/32|0]^=1<>>31^M&&(o[N/32|0]^=1<{if(e.length>t.length){let i=t;t=e,e=i}return 0===e.length?t.length:e.length<=32?n(e,t):r(e,t)},o=(e,t)=>{let n=1/0,r=0;for(let o=0;o`Invalid value for key ${e}`,g=e=>`Pattern length exceeds max of ${e}.`,y=e=>`Missing ${e} property in key`,b=e=>`Property 'weight' in key '${e}' must be a positive integer`,E=Object.prototype.hasOwnProperty;class w{constructor(e){this._keys=[],this._keyMap={};let t=0;e.forEach(e=>{let n=x(e);t+=n.weight,this._keys.push(n),this._keyMap[n.id]=n,t+=n.weight}),this._keys.forEach(e=>{e.weight/=t})}get(e){return this._keyMap[e]}keys(){return this._keys}toJSON(){return JSON.stringify(this._keys)}}function x(e){let t=null,n=null,i=null,o=1,a=null;if(s(e)||r(e))i=e,t=_(e),n=S(e);else{if(!E.call(e,"name"))throw Error(y("name"));let u=e.name;if(i=u,E.call(e,"weight")&&(o=e.weight)<=0)throw Error(b(u));t=_(u),n=S(u),a=e.getFn}return{path:t,id:n,weight:o,src:i,getFn:a}}function _(e){return r(e)?e:e.split(".")}function S(e){return r(e)?e.join("."):e}function C(e,t){let n=[],i=!1,o=(e,t,l)=>{if(d(e)){if(t[l]){let f=t[l],p=e[f];if(d(p))if(l===t.length-1&&(s(p)||u(p)||c(p)))n.push(a(p));else if(r(p)){i=!0;for(let h=0,m=p.length;he.score===t.score?e.idx{this._keysMap[e.id]=t})}create(){!this.isCreated&&this.docs.length&&(this.isCreated=!0,s(this.docs[0])?this.docs.forEach((e,t)=>{this._addString(e,t)}):this.docs.forEach((e,t)=>{this._addObject(e,t)}),this.norm.clear())}add(e){let t=this.size();s(e)?this._addString(e,t):this._addObject(e,t)}removeAt(e){this.records.splice(e,1);for(let t=e,n=this.size();t{let o=t.getFn?t.getFn(e):this.getFn(e,t.path);if(d(o)){if(r(o)){let a=[],u=[{nestedArrIndex:-1,value:o}];for(;u.length;){let{nestedArrIndex:c,value:l}=u.pop();if(d(l)){if(s(l)&&!p(l)){let f={v:l,i:c,n:this.norm.get(l)};a.push(f)}else r(l)&&l.forEach((e,t)=>{u.push({nestedArrIndex:t,value:e})})}}n.$[i]=a}else if(s(o)&&!p(o)){let h={v:o,n:this.norm.get(o)};n.$[i]=h}}}),this.records.push(n)}toJSON(){return{keys:this.keys,records:this.records}}}function M(e,t,{getFn:n=T.getFn,fieldNormWeight:r=T.fieldNormWeight}={}){let i=new I({getFn:n,fieldNormWeight:r});return i.setKeys(e.map(x)),i.setSources(t),i.create(),i}function F(e,{getFn:t=T.getFn,fieldNormWeight:n=T.fieldNormWeight}={}){let{keys:r,records:i}=e,o=new I({getFn:t,fieldNormWeight:n});return o.setKeys(r),o.setIndexRecords(i),o}function R(e,{errors:t=0,currentLocation:n=0,expectedLocation:r=0,distance:i=T.distance,ignoreLocation:o=T.ignoreLocation}={}){let a=t/e.length;if(o)return a;let s=Math.abs(r-n);return i?a+s/i:s?1:a}function L(e=[],t=T.minMatchCharLength){let n=[],r=-1,i=-1,o=0;for(let a=e.length;o=t&&n.push([r,i]),r=-1)}return e[o-1]&&o-r>=t&&n.push([r,o-1]),n}let j=32;function B(e,t,n,{location:r=T.location,distance:i=T.distance,threshold:o=T.threshold,findAllMatches:a=T.findAllMatches,minMatchCharLength:s=T.minMatchCharLength,includeMatches:u=T.includeMatches,ignoreLocation:c=T.ignoreLocation}={}){if(t.length>j)throw Error(g(j));let l=t.length,f=e.length,d=Math.max(0,Math.min(r,f)),p=o,h=d,m=s>1||u,v=m?Array(f):[],y;for(;(y=e.indexOf(t,h))>-1;)if(p=Math.min(R(t,{currentLocation:y,expectedLocation:d,distance:i,ignoreLocation:c}),p),h=y+l,m){let b=0;for(;b=O;P-=1){let I=P-1,M=n[e.charAt(I)];if(m&&(v[I]=+!!M),N[P]=(N[P+1]<<1|1)&M,S&&(N[P]|=(E[P+1]|E[P])<<1|1|E[P+1]),N[P]&_&&(w=R(t,{errors:S,currentLocation:I,expectedLocation:d,distance:i,ignoreLocation:c}))<=p){if(p=w,(h=I)<=d)break;O=Math.max(1,2*d-h)}}let F=R(t,{errors:S+1,currentLocation:d,expectedLocation:d,distance:i,ignoreLocation:c});if(F>p)break;E=N}let B={isMatch:h>=0,score:Math.max(.001,w)};if(m){let U=L(v,s);U.length?u&&(B.indices=U):B.isMatch=!1}return B}function U(e){let t={};for(let n=0,r=e.length;n{this.chunks.push({pattern:e,alphabet:U(e),startIndex:t})},l=this.pattern.length;if(l>j){let f=0,d=l%j,p=l-d;for(;f{let{isMatch:h,score:m,indices:v}=B(e,t,r,{location:i+p,distance:o,threshold:a,findAllMatches:s,minMatchCharLength:u,includeMatches:n,ignoreLocation:c});h&&(d=!0),f+=m,h&&v&&(l=[...l,...v])});let p={isMatch:d,score:d?f/this.chunks.length:1};return d&&n&&(p.indices=l),p}}class V{constructor(e){this.pattern=e}static isMultiMatch(e){return z(e,this.multiRegex)}static isSingleMatch(e){return z(e,this.singleRegex)}search(){}}function z(e,t){let n=e.match(t);return n?n[1]:null}class H extends V{constructor(e){super(e)}static get type(){return"exact"}static get multiRegex(){return/^="(.*)"$/}static get singleRegex(){return/^=(.*)$/}search(e){let t=e===this.pattern;return{isMatch:t,score:t?0:1,indices:[0,this.pattern.length-1]}}}class W extends V{constructor(e){super(e)}static get type(){return"inverse-exact"}static get multiRegex(){return/^!"(.*)"$/}static get singleRegex(){return/^!(.*)$/}search(e){let t=e.indexOf(this.pattern),n=-1===t;return{isMatch:n,score:n?0:1,indices:[0,e.length-1]}}}class $ extends V{constructor(e){super(e)}static get type(){return"prefix-exact"}static get multiRegex(){return/^\^"(.*)"$/}static get singleRegex(){return/^\^(.*)$/}search(e){let t=e.startsWith(this.pattern);return{isMatch:t,score:t?0:1,indices:[0,this.pattern.length-1]}}}class G extends V{constructor(e){super(e)}static get type(){return"inverse-prefix-exact"}static get multiRegex(){return/^!\^"(.*)"$/}static get singleRegex(){return/^!\^(.*)$/}search(e){let t=!e.startsWith(this.pattern);return{isMatch:t,score:t?0:1,indices:[0,e.length-1]}}}class q extends V{constructor(e){super(e)}static get type(){return"suffix-exact"}static get multiRegex(){return/^"(.*)"\$$/}static get singleRegex(){return/^(.*)\$$/}search(e){let t=e.endsWith(this.pattern);return{isMatch:t,score:t?0:1,indices:[e.length-this.pattern.length,e.length-1]}}}class K extends V{constructor(e){super(e)}static get type(){return"inverse-suffix-exact"}static get multiRegex(){return/^!"(.*)"\$$/}static get singleRegex(){return/^!(.*)\$$/}search(e){let t=!e.endsWith(this.pattern);return{isMatch:t,score:t?0:1,indices:[0,e.length-1]}}}class Y extends V{constructor(e,{location:t=T.location,threshold:n=T.threshold,distance:r=T.distance,includeMatches:i=T.includeMatches,findAllMatches:o=T.findAllMatches,minMatchCharLength:a=T.minMatchCharLength,isCaseSensitive:s=T.isCaseSensitive,ignoreLocation:u=T.ignoreLocation}={}){super(e),this._bitapSearch=new Z(e,{location:t,threshold:n,distance:r,includeMatches:i,findAllMatches:o,minMatchCharLength:a,isCaseSensitive:s,ignoreLocation:u})}static get type(){return"fuzzy"}static get multiRegex(){return/^"(.*)"$/}static get singleRegex(){return/^(.*)$/}search(e){return this._bitapSearch.searchIn(e)}}class X extends V{constructor(e){super(e)}static get type(){return"include"}static get multiRegex(){return/^'"(.*)"$/}static get singleRegex(){return/^'(.*)$/}search(e){let t=0,n,r=[],i=this.pattern.length;for(;(n=e.indexOf(this.pattern,t))>-1;)t=n+i,r.push([n,t-1]);let o=!!r.length;return{isMatch:o,score:o?0:1,indices:r}}}let J=[H,X,$,G,K,q,W,Y],Q=J.length,ee=/ +(?=(?:[^\"]*\"[^\"]*\")*[^\"]*$)/,et="|";function en(e,t={}){return e.split(et).map(e=>{let n=e.trim().split(ee).filter(e=>e&&!!e.trim()),r=[];for(let i=0,o=n.length;i!!(e[eu.AND]||e[eu.OR]),ef=e=>!!e[ec.PATH],ed=e=>!r(e)&&l(e)&&!el(e),ep=e=>({[eu.AND]:Object.keys(e).map(t=>({[t]:e[t]}))});function eh(e,t,{auto:n=!0}={}){let i=e=>{let o=Object.keys(e),a=ef(e);if(!a&&o.length>1&&!el(e))return i(ep(e));if(ed(e)){let u=a?e[ec.PATH]:o[0],c=a?e[ec.PATTERN]:e[u];if(!s(c))throw Error(v(u));let l={keyId:S(u),pattern:c};return n&&(l.searcher=es(c,t)),l}let f={children:[],operator:o[0]};return o.forEach(t=>{let n=e[t];r(n)&&n.forEach(e=>{f.children.push(i(e))})}),f};return el(e)||(e=ep(e)),i(e)}function em(e,{ignoreFieldNorm:t=T.ignoreFieldNorm}){e.forEach(e=>{let n=1;e.matches.forEach(({key:e,norm:r,score:i})=>{let o=e?e.weight:null;n*=Math.pow(0===i&&o?Number.EPSILON:i,(o||1)*(t?1:r))}),e.score=n})}function ev(e,t){let n=e.matches;t.matches=[],d(n)&&n.forEach(e=>{if(!d(e.indices)||!e.indices.length)return;let{indices:n,value:r}=e,i={indices:n,value:r};e.key&&(i.key=e.key.src),e.idx>-1&&(i.refIndex=e.idx),t.matches.push(i)})}function eg(e,t){t.score=e.score}function ey(e,t,{includeMatches:n=T.includeMatches,includeScore:r=T.includeScore}={}){let i=[];return n&&i.push(ev),r&&i.push(eg),e.map(e=>{let{idx:n}=e,r={item:t[n],refIndex:n};return i.length&&i.forEach(t=>{t(e,r)}),r})}class eb{constructor(e,t={},n){this.options={...T,...t},this.options.useExtendedSearch,this._keyStore=new w(this.options.keys),this.setCollection(e,n)}setCollection(e,t){if(this._docs=e,t&&!(t instanceof I))throw Error(m);this._myIndex=t||M(this.options.keys,this._docs,{getFn:this.options.getFn,fieldNormWeight:this.options.fieldNormWeight})}add(e){d(e)&&(this._docs.push(e),this._myIndex.add(e))}remove(e=()=>!1){let t=[];for(let n=0,r=this._docs.length;n-1&&(c=c.slice(0,t)),ey(c,this._docs,{includeMatches:n,includeScore:r})}_searchStringList(e){let t=es(e,this.options),{records:n}=this._myIndex,r=[];return n.forEach(({v:e,i:n,n:i})=>{if(!d(e))return;let{isMatch:o,score:a,indices:s}=t.searchIn(e);o&&r.push({item:e,idx:n,matches:[{score:a,value:e,norm:i,indices:s}]})}),r}_searchLogical(e){let t=eh(e,this.options),n=(e,t,r)=>{if(!e.children){let{keyId:i,searcher:o}=e,a=this._findMatches({key:this._keyStore.get(i),value:this._myIndex.getValueForItemAtKeyId(t,i),searcher:o});return a&&a.length?[{idx:r,item:t,matches:a}]:[]}let s=[];for(let u=0,c=e.children.length;u{if(d(e)){let a=n(t,e,r);a.length&&(i[r]||(i[r]={idx:r,item:e,matches:[]},o.push(i[r])),a.forEach(({matches:e})=>{i[r].matches.push(...e)}))}}),o}_searchObjectList(e){let t=es(e,this.options),{keys:n,records:r}=this._myIndex,i=[];return r.forEach(({$:e,i:r})=>{if(!d(e))return;let o=[];n.forEach((n,r)=>{o.push(...this._findMatches({key:n,value:e[r],searcher:t}))}),o.length&&i.push({idx:r,item:e,matches:o})}),i}_findMatches({key:e,value:t,searcher:n}){if(!d(t))return[];let i=[];if(r(t))t.forEach(({v:t,i:r,n:o})=>{if(!d(t))return;let{isMatch:a,score:s,indices:u}=n.searchIn(t);a&&i.push({score:s,key:e,value:t,idx:r,norm:o,indices:u})});else{let{v:o,n:a}=t,{isMatch:s,score:u,indices:c}=n.searchIn(o);s&&i.push({score:u,key:e,value:o,norm:a,indices:c})}return i}}eb.version="6.6.2",eb.createIndex=M,eb.parseIndex=F,eb.config=T,eb.parseQuery=eh,ea(ei)},40210:function(module,__unused_webpack_exports,__webpack_require__){"use strict";var undefined,$SyntaxError=SyntaxError,$Function=Function,$TypeError=TypeError,getEvalledConstructor=function(e){try{return $Function('"use strict"; return ('+e+").constructor;")()}catch(t){}},$gOPD=Object.getOwnPropertyDescriptor;if($gOPD)try{$gOPD({},"")}catch(e){$gOPD=null}var throwTypeError=function(){throw new $TypeError},ThrowTypeError=$gOPD?function(){try{return arguments.callee,throwTypeError}catch(t){try{return $gOPD(arguments,"callee").get}catch(e){return throwTypeError}}}():throwTypeError,hasSymbols=__webpack_require__(41405)(),getProto=Object.getPrototypeOf||function(e){return e.__proto__},needsEval={},TypedArray="undefined"==typeof Uint8Array?undefined:getProto(Uint8Array),INTRINSICS={"%AggregateError%":"undefined"==typeof AggregateError?undefined:AggregateError,"%Array%":Array,"%ArrayBuffer%":"undefined"==typeof ArrayBuffer?undefined:ArrayBuffer,"%ArrayIteratorPrototype%":hasSymbols?getProto([][Symbol.iterator]()):undefined,"%AsyncFromSyncIteratorPrototype%":undefined,"%AsyncFunction%":needsEval,"%AsyncGenerator%":needsEval,"%AsyncGeneratorFunction%":needsEval,"%AsyncIteratorPrototype%":needsEval,"%Atomics%":"undefined"==typeof Atomics?undefined:Atomics,"%BigInt%":"undefined"==typeof BigInt?undefined:BigInt,"%Boolean%":Boolean,"%DataView%":"undefined"==typeof DataView?undefined:DataView,"%Date%":Date,"%decodeURI%":decodeURI,"%decodeURIComponent%":decodeURIComponent,"%encodeURI%":encodeURI,"%encodeURIComponent%":encodeURIComponent,"%Error%":Error,"%eval%":eval,"%EvalError%":EvalError,"%Float32Array%":"undefined"==typeof Float32Array?undefined:Float32Array,"%Float64Array%":"undefined"==typeof Float64Array?undefined:Float64Array,"%FinalizationRegistry%":"undefined"==typeof FinalizationRegistry?undefined:FinalizationRegistry,"%Function%":$Function,"%GeneratorFunction%":needsEval,"%Int8Array%":"undefined"==typeof Int8Array?undefined:Int8Array,"%Int16Array%":"undefined"==typeof Int16Array?undefined:Int16Array,"%Int32Array%":"undefined"==typeof Int32Array?undefined:Int32Array,"%isFinite%":isFinite,"%isNaN%":isNaN,"%IteratorPrototype%":hasSymbols?getProto(getProto([][Symbol.iterator]())):undefined,"%JSON%":"object"==typeof JSON?JSON:undefined,"%Map%":"undefined"==typeof Map?undefined:Map,"%MapIteratorPrototype%":"undefined"!=typeof Map&&hasSymbols?getProto(new Map()[Symbol.iterator]()):undefined,"%Math%":Math,"%Number%":Number,"%Object%":Object,"%parseFloat%":parseFloat,"%parseInt%":parseInt,"%Promise%":"undefined"==typeof Promise?undefined:Promise,"%Proxy%":"undefined"==typeof Proxy?undefined:Proxy,"%RangeError%":RangeError,"%ReferenceError%":ReferenceError,"%Reflect%":"undefined"==typeof Reflect?undefined:Reflect,"%RegExp%":RegExp,"%Set%":"undefined"==typeof Set?undefined:Set,"%SetIteratorPrototype%":"undefined"!=typeof Set&&hasSymbols?getProto(new Set()[Symbol.iterator]()):undefined,"%SharedArrayBuffer%":"undefined"==typeof SharedArrayBuffer?undefined:SharedArrayBuffer,"%String%":String,"%StringIteratorPrototype%":hasSymbols?getProto(""[Symbol.iterator]()):undefined,"%Symbol%":hasSymbols?Symbol:undefined,"%SyntaxError%":$SyntaxError,"%ThrowTypeError%":ThrowTypeError,"%TypedArray%":TypedArray,"%TypeError%":$TypeError,"%Uint8Array%":"undefined"==typeof Uint8Array?undefined:Uint8Array,"%Uint8ClampedArray%":"undefined"==typeof Uint8ClampedArray?undefined:Uint8ClampedArray,"%Uint16Array%":"undefined"==typeof Uint16Array?undefined:Uint16Array,"%Uint32Array%":"undefined"==typeof Uint32Array?undefined:Uint32Array,"%URIError%":URIError,"%WeakMap%":"undefined"==typeof WeakMap?undefined:WeakMap,"%WeakRef%":"undefined"==typeof WeakRef?undefined:WeakRef,"%WeakSet%":"undefined"==typeof WeakSet?undefined:WeakSet},doEval=function e(t){var n;if("%AsyncFunction%"===t)n=getEvalledConstructor("async function () {}");else if("%GeneratorFunction%"===t)n=getEvalledConstructor("function* () {}");else if("%AsyncGeneratorFunction%"===t)n=getEvalledConstructor("async function* () {}");else if("%AsyncGenerator%"===t){var r=e("%AsyncGeneratorFunction%");r&&(n=r.prototype)}else if("%AsyncIteratorPrototype%"===t){var i=e("%AsyncGenerator%");i&&(n=getProto(i.prototype))}return INTRINSICS[t]=n,n},LEGACY_ALIASES={"%ArrayBufferPrototype%":["ArrayBuffer","prototype"],"%ArrayPrototype%":["Array","prototype"],"%ArrayProto_entries%":["Array","prototype","entries"],"%ArrayProto_forEach%":["Array","prototype","forEach"],"%ArrayProto_keys%":["Array","prototype","keys"],"%ArrayProto_values%":["Array","prototype","values"],"%AsyncFunctionPrototype%":["AsyncFunction","prototype"],"%AsyncGenerator%":["AsyncGeneratorFunction","prototype"],"%AsyncGeneratorPrototype%":["AsyncGeneratorFunction","prototype","prototype"],"%BooleanPrototype%":["Boolean","prototype"],"%DataViewPrototype%":["DataView","prototype"],"%DatePrototype%":["Date","prototype"],"%ErrorPrototype%":["Error","prototype"],"%EvalErrorPrototype%":["EvalError","prototype"],"%Float32ArrayPrototype%":["Float32Array","prototype"],"%Float64ArrayPrototype%":["Float64Array","prototype"],"%FunctionPrototype%":["Function","prototype"],"%Generator%":["GeneratorFunction","prototype"],"%GeneratorPrototype%":["GeneratorFunction","prototype","prototype"],"%Int8ArrayPrototype%":["Int8Array","prototype"],"%Int16ArrayPrototype%":["Int16Array","prototype"],"%Int32ArrayPrototype%":["Int32Array","prototype"],"%JSONParse%":["JSON","parse"],"%JSONStringify%":["JSON","stringify"],"%MapPrototype%":["Map","prototype"],"%NumberPrototype%":["Number","prototype"],"%ObjectPrototype%":["Object","prototype"],"%ObjProto_toString%":["Object","prototype","toString"],"%ObjProto_valueOf%":["Object","prototype","valueOf"],"%PromisePrototype%":["Promise","prototype"],"%PromiseProto_then%":["Promise","prototype","then"],"%Promise_all%":["Promise","all"],"%Promise_reject%":["Promise","reject"],"%Promise_resolve%":["Promise","resolve"],"%RangeErrorPrototype%":["RangeError","prototype"],"%ReferenceErrorPrototype%":["ReferenceError","prototype"],"%RegExpPrototype%":["RegExp","prototype"],"%SetPrototype%":["Set","prototype"],"%SharedArrayBufferPrototype%":["SharedArrayBuffer","prototype"],"%StringPrototype%":["String","prototype"],"%SymbolPrototype%":["Symbol","prototype"],"%SyntaxErrorPrototype%":["SyntaxError","prototype"],"%TypedArrayPrototype%":["TypedArray","prototype"],"%TypeErrorPrototype%":["TypeError","prototype"],"%Uint8ArrayPrototype%":["Uint8Array","prototype"],"%Uint8ClampedArrayPrototype%":["Uint8ClampedArray","prototype"],"%Uint16ArrayPrototype%":["Uint16Array","prototype"],"%Uint32ArrayPrototype%":["Uint32Array","prototype"],"%URIErrorPrototype%":["URIError","prototype"],"%WeakMapPrototype%":["WeakMap","prototype"],"%WeakSetPrototype%":["WeakSet","prototype"]},bind=__webpack_require__(58612),hasOwn=__webpack_require__(17642),$concat=bind.call(Function.call,Array.prototype.concat),$spliceApply=bind.call(Function.apply,Array.prototype.splice),$replace=bind.call(Function.call,String.prototype.replace),$strSlice=bind.call(Function.call,String.prototype.slice),$exec=bind.call(Function.call,RegExp.prototype.exec),rePropName=/[^%.[\]]+|\[(?:(-?\d+(?:\.\d+)?)|(["'])((?:(?!\2)[^\\]|\\.)*?)\2)\]|(?=(?:\.|\[\])(?:\.|\[\]|%$))/g,reEscapeChar=/\\(\\)?/g,stringToPath=function(e){var t=$strSlice(e,0,1),n=$strSlice(e,-1);if("%"===t&&"%"!==n)throw new $SyntaxError("invalid intrinsic syntax, expected closing `%`");if("%"===n&&"%"!==t)throw new $SyntaxError("invalid intrinsic syntax, expected opening `%`");var r=[];return $replace(e,rePropName,function(e,t,n,i){r[r.length]=n?$replace(i,reEscapeChar,"$1"):t||e}),r},getBaseIntrinsic=function(e,t){var n,r=e;if(hasOwn(LEGACY_ALIASES,r)&&(r="%"+(n=LEGACY_ALIASES[r])[0]+"%"),hasOwn(INTRINSICS,r)){var i=INTRINSICS[r];if(i===needsEval&&(i=doEval(r)),void 0===i&&!t)throw new $TypeError("intrinsic "+e+" exists, but is not available. Please file an issue!");return{alias:n,name:r,value:i}}throw new $SyntaxError("intrinsic "+e+" does not exist!")};module.exports=function(e,t){if("string"!=typeof e||0===e.length)throw new $TypeError("intrinsic name must be a non-empty string");if(arguments.length>1&&"boolean"!=typeof t)throw new $TypeError('"allowMissing" argument must be a boolean');if(null===$exec(/^%?[^%]*%?$/,e))throw new $SyntaxError("`%` may not be present anywhere but at the beginning and end of the intrinsic name");var n=stringToPath(e),r=n.length>0?n[0]:"",i=getBaseIntrinsic("%"+r+"%",t),o=i.name,a=i.value,s=!1,u=i.alias;u&&(r=u[0],$spliceApply(n,$concat([0,1],u)));for(var c=1,l=!0;c=n.length){var h=$gOPD(a,f);a=(l=!!h)&&"get"in h&&!("originalValue"in h.get)?h.get:a[f]}else l=hasOwn(a,f),a=a[f];l&&!s&&(INTRINSICS[o]=a)}}return a}},69671:function(e,t,n){let r=n(81701);e.exports=o;let i=Object.hasOwnProperty;function o(){let e=this;if(!(e instanceof o))return new o;e.reset()}function a(e,t){return"string"!=typeof e?"":(t||(e=e.toLowerCase()),e.replace(r,"").replace(/ /g,"-"))}o.prototype.slug=function(e,t){let n=this,r=a(e,!0===t),o=r;for(;i.call(n.occurrences,r);)n.occurrences[o]++,r=o+"-"+n.occurrences[o];return n.occurrences[r]=0,r},o.prototype.reset=function(){this.occurrences=Object.create(null)},o.slug=a},81701:function(e){e.exports=/[\0-\x1F!-,\.\/:-@\[-\^`\{-\xA9\xAB-\xB4\xB6-\xB9\xBB-\xBF\xD7\xF7\u02C2-\u02C5\u02D2-\u02DF\u02E5-\u02EB\u02ED\u02EF-\u02FF\u0375\u0378\u0379\u037E\u0380-\u0385\u0387\u038B\u038D\u03A2\u03F6\u0482\u0530\u0557\u0558\u055A-\u055F\u0589-\u0590\u05BE\u05C0\u05C3\u05C6\u05C8-\u05CF\u05EB-\u05EE\u05F3-\u060F\u061B-\u061F\u066A-\u066D\u06D4\u06DD\u06DE\u06E9\u06FD\u06FE\u0700-\u070F\u074B\u074C\u07B2-\u07BF\u07F6-\u07F9\u07FB\u07FC\u07FE\u07FF\u082E-\u083F\u085C-\u085F\u086B-\u089F\u08B5\u08BE-\u08D2\u08E2\u0964\u0965\u0970\u0984\u098D\u098E\u0991\u0992\u09A9\u09B1\u09B3-\u09B5\u09BA\u09BB\u09C5\u09C6\u09C9\u09CA\u09CF-\u09D6\u09D8-\u09DB\u09DE\u09E4\u09E5\u09F2-\u09FB\u09FD\u09FF\u0A00\u0A04\u0A0B-\u0A0E\u0A11\u0A12\u0A29\u0A31\u0A34\u0A37\u0A3A\u0A3B\u0A3D\u0A43-\u0A46\u0A49\u0A4A\u0A4E-\u0A50\u0A52-\u0A58\u0A5D\u0A5F-\u0A65\u0A76-\u0A80\u0A84\u0A8E\u0A92\u0AA9\u0AB1\u0AB4\u0ABA\u0ABB\u0AC6\u0ACA\u0ACE\u0ACF\u0AD1-\u0ADF\u0AE4\u0AE5\u0AF0-\u0AF8\u0B00\u0B04\u0B0D\u0B0E\u0B11\u0B12\u0B29\u0B31\u0B34\u0B3A\u0B3B\u0B45\u0B46\u0B49\u0B4A\u0B4E-\u0B55\u0B58-\u0B5B\u0B5E\u0B64\u0B65\u0B70\u0B72-\u0B81\u0B84\u0B8B-\u0B8D\u0B91\u0B96-\u0B98\u0B9B\u0B9D\u0BA0-\u0BA2\u0BA5-\u0BA7\u0BAB-\u0BAD\u0BBA-\u0BBD\u0BC3-\u0BC5\u0BC9\u0BCE\u0BCF\u0BD1-\u0BD6\u0BD8-\u0BE5\u0BF0-\u0BFF\u0C0D\u0C11\u0C29\u0C3A-\u0C3C\u0C45\u0C49\u0C4E-\u0C54\u0C57\u0C5B-\u0C5F\u0C64\u0C65\u0C70-\u0C7F\u0C84\u0C8D\u0C91\u0CA9\u0CB4\u0CBA\u0CBB\u0CC5\u0CC9\u0CCE-\u0CD4\u0CD7-\u0CDD\u0CDF\u0CE4\u0CE5\u0CF0\u0CF3-\u0CFF\u0D04\u0D0D\u0D11\u0D45\u0D49\u0D4F-\u0D53\u0D58-\u0D5E\u0D64\u0D65\u0D70-\u0D79\u0D80\u0D81\u0D84\u0D97-\u0D99\u0DB2\u0DBC\u0DBE\u0DBF\u0DC7-\u0DC9\u0DCB-\u0DCE\u0DD5\u0DD7\u0DE0-\u0DE5\u0DF0\u0DF1\u0DF4-\u0E00\u0E3B-\u0E3F\u0E4F\u0E5A-\u0E80\u0E83\u0E85\u0E8B\u0EA4\u0EA6\u0EBE\u0EBF\u0EC5\u0EC7\u0ECE\u0ECF\u0EDA\u0EDB\u0EE0-\u0EFF\u0F01-\u0F17\u0F1A-\u0F1F\u0F2A-\u0F34\u0F36\u0F38\u0F3A-\u0F3D\u0F48\u0F6D-\u0F70\u0F85\u0F98\u0FBD-\u0FC5\u0FC7-\u0FFF\u104A-\u104F\u109E\u109F\u10C6\u10C8-\u10CC\u10CE\u10CF\u10FB\u1249\u124E\u124F\u1257\u1259\u125E\u125F\u1289\u128E\u128F\u12B1\u12B6\u12B7\u12BF\u12C1\u12C6\u12C7\u12D7\u1311\u1316\u1317\u135B\u135C\u1360-\u137F\u1390-\u139F\u13F6\u13F7\u13FE-\u1400\u166D\u166E\u1680\u169B-\u169F\u16EB-\u16ED\u16F9-\u16FF\u170D\u1715-\u171F\u1735-\u173F\u1754-\u175F\u176D\u1771\u1774-\u177F\u17D4-\u17D6\u17D8-\u17DB\u17DE\u17DF\u17EA-\u180A\u180E\u180F\u181A-\u181F\u1879-\u187F\u18AB-\u18AF\u18F6-\u18FF\u191F\u192C-\u192F\u193C-\u1945\u196E\u196F\u1975-\u197F\u19AC-\u19AF\u19CA-\u19CF\u19DA-\u19FF\u1A1C-\u1A1F\u1A5F\u1A7D\u1A7E\u1A8A-\u1A8F\u1A9A-\u1AA6\u1AA8-\u1AAF\u1ABF-\u1AFF\u1B4C-\u1B4F\u1B5A-\u1B6A\u1B74-\u1B7F\u1BF4-\u1BFF\u1C38-\u1C3F\u1C4A-\u1C4C\u1C7E\u1C7F\u1C89-\u1C8F\u1CBB\u1CBC\u1CC0-\u1CCF\u1CD3\u1CFB-\u1CFF\u1DFA\u1F16\u1F17\u1F1E\u1F1F\u1F46\u1F47\u1F4E\u1F4F\u1F58\u1F5A\u1F5C\u1F5E\u1F7E\u1F7F\u1FB5\u1FBD\u1FBF-\u1FC1\u1FC5\u1FCD-\u1FCF\u1FD4\u1FD5\u1FDC-\u1FDF\u1FED-\u1FF1\u1FF5\u1FFD-\u203E\u2041-\u2053\u2055-\u2070\u2072-\u207E\u2080-\u208F\u209D-\u20CF\u20F1-\u2101\u2103-\u2106\u2108\u2109\u2114\u2116-\u2118\u211E-\u2123\u2125\u2127\u2129\u212E\u213A\u213B\u2140-\u2144\u214A-\u214D\u214F-\u215F\u2189-\u24B5\u24EA-\u2BFF\u2C2F\u2C5F\u2CE5-\u2CEA\u2CF4-\u2CFF\u2D26\u2D28-\u2D2C\u2D2E\u2D2F\u2D68-\u2D6E\u2D70-\u2D7E\u2D97-\u2D9F\u2DA7\u2DAF\u2DB7\u2DBF\u2DC7\u2DCF\u2DD7\u2DDF\u2E00-\u2E2E\u2E30-\u3004\u3008-\u3020\u3030\u3036\u3037\u303D-\u3040\u3097\u3098\u309B\u309C\u30A0\u30FB\u3100-\u3104\u3130\u318F-\u319F\u31BB-\u31EF\u3200-\u33FF\u4DB6-\u4DFF\u9FF0-\u9FFF\uA48D-\uA4CF\uA4FE\uA4FF\uA60D-\uA60F\uA62C-\uA63F\uA673\uA67E\uA6F2-\uA716\uA720\uA721\uA789\uA78A\uA7C0\uA7C1\uA7C7-\uA7F6\uA828-\uA83F\uA874-\uA87F\uA8C6-\uA8CF\uA8DA-\uA8DF\uA8F8-\uA8FA\uA8FC\uA92E\uA92F\uA954-\uA95F\uA97D-\uA97F\uA9C1-\uA9CE\uA9DA-\uA9DF\uA9FF\uAA37-\uAA3F\uAA4E\uAA4F\uAA5A-\uAA5F\uAA77-\uAA79\uAAC3-\uAADA\uAADE\uAADF\uAAF0\uAAF1\uAAF7-\uAB00\uAB07\uAB08\uAB0F\uAB10\uAB17-\uAB1F\uAB27\uAB2F\uAB5B\uAB68-\uAB6F\uABEB\uABEE\uABEF\uABFA-\uABFF\uD7A4-\uD7AF\uD7C7-\uD7CA\uD7FC-\uD7FF\uE000-\uF8FF\uFA6E\uFA6F\uFADA-\uFAFF\uFB07-\uFB12\uFB18-\uFB1C\uFB29\uFB37\uFB3D\uFB3F\uFB42\uFB45\uFBB2-\uFBD2\uFD3E-\uFD4F\uFD90\uFD91\uFDC8-\uFDEF\uFDFC-\uFDFF\uFE10-\uFE1F\uFE30-\uFE32\uFE35-\uFE4C\uFE50-\uFE6F\uFE75\uFEFD-\uFF0F\uFF1A-\uFF20\uFF3B-\uFF3E\uFF40\uFF5B-\uFF65\uFFBF-\uFFC1\uFFC8\uFFC9\uFFD0\uFFD1\uFFD8\uFFD9\uFFDD-\uFFFF]|\uD800[\uDC0C\uDC27\uDC3B\uDC3E\uDC4E\uDC4F\uDC5E-\uDC7F\uDCFB-\uDD3F\uDD75-\uDDFC\uDDFE-\uDE7F\uDE9D-\uDE9F\uDED1-\uDEDF\uDEE1-\uDEFF\uDF20-\uDF2C\uDF4B-\uDF4F\uDF7B-\uDF7F\uDF9E\uDF9F\uDFC4-\uDFC7\uDFD0\uDFD6-\uDFFF]|\uD801[\uDC9E\uDC9F\uDCAA-\uDCAF\uDCD4-\uDCD7\uDCFC-\uDCFF\uDD28-\uDD2F\uDD64-\uDDFF\uDF37-\uDF3F\uDF56-\uDF5F\uDF68-\uDFFF]|\uD802[\uDC06\uDC07\uDC09\uDC36\uDC39-\uDC3B\uDC3D\uDC3E\uDC56-\uDC5F\uDC77-\uDC7F\uDC9F-\uDCDF\uDCF3\uDCF6-\uDCFF\uDD16-\uDD1F\uDD3A-\uDD7F\uDDB8-\uDDBD\uDDC0-\uDDFF\uDE04\uDE07-\uDE0B\uDE14\uDE18\uDE36\uDE37\uDE3B-\uDE3E\uDE40-\uDE5F\uDE7D-\uDE7F\uDE9D-\uDEBF\uDEC8\uDEE7-\uDEFF\uDF36-\uDF3F\uDF56-\uDF5F\uDF73-\uDF7F\uDF92-\uDFFF]|\uD803[\uDC49-\uDC7F\uDCB3-\uDCBF\uDCF3-\uDCFF\uDD28-\uDD2F\uDD3A-\uDEFF\uDF1D-\uDF26\uDF28-\uDF2F\uDF51-\uDFDF\uDFF7-\uDFFF]|\uD804[\uDC47-\uDC65\uDC70-\uDC7E\uDCBB-\uDCCF\uDCE9-\uDCEF\uDCFA-\uDCFF\uDD35\uDD40-\uDD43\uDD47-\uDD4F\uDD74\uDD75\uDD77-\uDD7F\uDDC5-\uDDC8\uDDCD-\uDDCF\uDDDB\uDDDD-\uDDFF\uDE12\uDE38-\uDE3D\uDE3F-\uDE7F\uDE87\uDE89\uDE8E\uDE9E\uDEA9-\uDEAF\uDEEB-\uDEEF\uDEFA-\uDEFF\uDF04\uDF0D\uDF0E\uDF11\uDF12\uDF29\uDF31\uDF34\uDF3A\uDF45\uDF46\uDF49\uDF4A\uDF4E\uDF4F\uDF51-\uDF56\uDF58-\uDF5C\uDF64\uDF65\uDF6D-\uDF6F\uDF75-\uDFFF]|\uD805[\uDC4B-\uDC4F\uDC5A-\uDC5D\uDC60-\uDC7F\uDCC6\uDCC8-\uDCCF\uDCDA-\uDD7F\uDDB6\uDDB7\uDDC1-\uDDD7\uDDDE-\uDDFF\uDE41-\uDE43\uDE45-\uDE4F\uDE5A-\uDE7F\uDEB9-\uDEBF\uDECA-\uDEFF\uDF1B\uDF1C\uDF2C-\uDF2F\uDF3A-\uDFFF]|\uD806[\uDC3B-\uDC9F\uDCEA-\uDCFE\uDD00-\uDD9F\uDDA8\uDDA9\uDDD8\uDDD9\uDDE2\uDDE5-\uDDFF\uDE3F-\uDE46\uDE48-\uDE4F\uDE9A-\uDE9C\uDE9E-\uDEBF\uDEF9-\uDFFF]|\uD807[\uDC09\uDC37\uDC41-\uDC4F\uDC5A-\uDC71\uDC90\uDC91\uDCA8\uDCB7-\uDCFF\uDD07\uDD0A\uDD37-\uDD39\uDD3B\uDD3E\uDD48-\uDD4F\uDD5A-\uDD5F\uDD66\uDD69\uDD8F\uDD92\uDD99-\uDD9F\uDDAA-\uDEDF\uDEF7-\uDFFF]|\uD808[\uDF9A-\uDFFF]|\uD809[\uDC6F-\uDC7F\uDD44-\uDFFF]|[\uD80A\uD80B\uD80E-\uD810\uD812-\uD819\uD823-\uD82B\uD82D\uD82E\uD830-\uD833\uD837\uD839\uD83D-\uD83F\uD87B-\uD87D\uD87F-\uDB3F\uDB41-\uDBFF][\uDC00-\uDFFF]|\uD80D[\uDC2F-\uDFFF]|\uD811[\uDE47-\uDFFF]|\uD81A[\uDE39-\uDE3F\uDE5F\uDE6A-\uDECF\uDEEE\uDEEF\uDEF5-\uDEFF\uDF37-\uDF3F\uDF44-\uDF4F\uDF5A-\uDF62\uDF78-\uDF7C\uDF90-\uDFFF]|\uD81B[\uDC00-\uDE3F\uDE80-\uDEFF\uDF4B-\uDF4E\uDF88-\uDF8E\uDFA0-\uDFDF\uDFE2\uDFE4-\uDFFF]|\uD821[\uDFF8-\uDFFF]|\uD822[\uDEF3-\uDFFF]|\uD82C[\uDD1F-\uDD4F\uDD53-\uDD63\uDD68-\uDD6F\uDEFC-\uDFFF]|\uD82F[\uDC6B-\uDC6F\uDC7D-\uDC7F\uDC89-\uDC8F\uDC9A-\uDC9C\uDC9F-\uDFFF]|\uD834[\uDC00-\uDD64\uDD6A-\uDD6C\uDD73-\uDD7A\uDD83\uDD84\uDD8C-\uDDA9\uDDAE-\uDE41\uDE45-\uDFFF]|\uD835[\uDC55\uDC9D\uDCA0\uDCA1\uDCA3\uDCA4\uDCA7\uDCA8\uDCAD\uDCBA\uDCBC\uDCC4\uDD06\uDD0B\uDD0C\uDD15\uDD1D\uDD3A\uDD3F\uDD45\uDD47-\uDD49\uDD51\uDEA6\uDEA7\uDEC1\uDEDB\uDEFB\uDF15\uDF35\uDF4F\uDF6F\uDF89\uDFA9\uDFC3\uDFCC\uDFCD]|\uD836[\uDC00-\uDDFF\uDE37-\uDE3A\uDE6D-\uDE74\uDE76-\uDE83\uDE85-\uDE9A\uDEA0\uDEB0-\uDFFF]|\uD838[\uDC07\uDC19\uDC1A\uDC22\uDC25\uDC2B-\uDCFF\uDD2D-\uDD2F\uDD3E\uDD3F\uDD4A-\uDD4D\uDD4F-\uDEBF\uDEFA-\uDFFF]|\uD83A[\uDCC5-\uDCCF\uDCD7-\uDCFF\uDD4C-\uDD4F\uDD5A-\uDFFF]|\uD83B[\uDC00-\uDDFF\uDE04\uDE20\uDE23\uDE25\uDE26\uDE28\uDE33\uDE38\uDE3A\uDE3C-\uDE41\uDE43-\uDE46\uDE48\uDE4A\uDE4C\uDE50\uDE53\uDE55\uDE56\uDE58\uDE5A\uDE5C\uDE5E\uDE60\uDE63\uDE65\uDE66\uDE6B\uDE73\uDE78\uDE7D\uDE7F\uDE8A\uDE9C-\uDEA0\uDEA4\uDEAA\uDEBC-\uDFFF]|\uD83C[\uDC00-\uDD2F\uDD4A-\uDD4F\uDD6A-\uDD6F\uDD8A-\uDFFF]|\uD869[\uDED7-\uDEFF]|\uD86D[\uDF35-\uDF3F]|\uD86E[\uDC1E\uDC1F]|\uD873[\uDEA2-\uDEAF]|\uD87A[\uDFE1-\uDFFF]|\uD87E[\uDE1E-\uDFFF]|\uDB40[\uDC00-\uDCFF\uDDF0-\uDFFF]/g},9675:function(e,t,n){"use strict";let r=n(33596),i=n(21006),o=n(45294),a=n(9809),s=n(38497),u=n(86378),c=n(28181),l=n(79254),f=n(55707);function d(e,t){if(""===e)return{data:{},content:e,excerpt:"",orig:e};let n=c(e),r=d.cache[n.content];if(!t){if(r)return(n=Object.assign({},r)).orig=r.orig,n;d.cache[n.content]=n}return p(n,t)}function p(e,t){let n=o(t),r=n.delimiters[0],a="\n"+n.delimiters[1],u=e.content;n.language&&(e.language=n.language);let c=r.length;if(!f.startsWith(u,r,c))return s(e,n),e;if(u.charAt(c)===r.slice(-1))return e;u=u.slice(c);let p=u.length,h=d.language(u,n);h.name&&(e.language=h.name,u=u.slice(h.raw.length));let m=u.indexOf(a);-1===m&&(m=p),e.matter=u.slice(0,m);let v=e.matter.replace(/^\s*#[^\n]+/gm,"").trim();return""===v?(e.isEmpty=!0,e.empty=e.content,e.data={}):e.data=l(e.language,e.matter,n),m===p?e.content="":(e.content=u.slice(m+a.length),"\r"===e.content[0]&&(e.content=e.content.slice(1)),"\n"===e.content[0]&&(e.content=e.content.slice(1))),s(e,n),(!0===n.sections||"function"==typeof n.section)&&i(e,n.section),e}d.engines=u,d.stringify=function(e,t,n){return"string"==typeof e&&(e=d(e,n)),a(e,t,n)},d.read=function(e,t){let n=r.readFileSync(e,"utf8"),i=d(n,t);return i.path=e,i},d.test=function(e,t){return f.startsWith(e,o(t).delimiters[0])},d.language=function(e,t){let n=o(t),r=n.delimiters[0];d.test(e)&&(e=e.slice(r.length));let i=e.slice(0,e.search(/\r?\n/));return{raw:i,name:i?i.trim():""}},d.cache={},d.clearCache=function(){d.cache={}},e.exports=d},45294:function(e,t,n){"use strict";let r=n(86378),i=n(55707);e.exports=function(e){let t=Object.assign({},e);return t.delimiters=i.arrayify(t.delims||t.delimiters||"---"),1===t.delimiters.length&&t.delimiters.push(t.delimiters[0]),t.language=(t.language||t.lang||"yaml").toLowerCase(),t.engines=Object.assign({},r,t.parsers,t.engines),t}},78193:function(e){"use strict";function t(e){switch(e.toLowerCase()){case"js":case"javascript":return"javascript";case"coffee":case"coffeescript":case"cson":return"coffee";case"yaml":case"yml":return"yaml";default:return e}}e.exports=function(e,n){let r=n.engines[e]||n.engines[t(e)];if(void 0===r)throw Error('gray-matter engine "'+e+'" is not registered');return"function"==typeof r&&(r={parse:r}),r}},86378:function(module,exports,__webpack_require__){"use strict";let yaml=__webpack_require__(93320),engines=exports=module.exports;engines.yaml={parse:yaml.safeLoad.bind(yaml),stringify:yaml.safeDump.bind(yaml)},engines.json={parse:JSON.parse.bind(JSON),stringify:function(e,t){let n=Object.assign({replacer:null,space:2},t);return JSON.stringify(e,n.replacer,n.space)}},engines.javascript={parse:function parse(str,options,wrap){try{return!1!==wrap&&(str="(function() {\nreturn "+str.trim()+";\n}());"),eval(str)||{}}catch(err){if(!1!==wrap&&/(unexpected|identifier)/i.test(err.message))return parse(str,options,!1);throw SyntaxError(err)}},stringify:function(){throw Error("stringifying JavaScript is not supported")}}},38497:function(e,t,n){"use strict";let r=n(45294);e.exports=function(e,t){let n=r(t);if(null==e.data&&(e.data={}),"function"==typeof n.excerpt)return n.excerpt(e,n);let i=e.data.excerpt_separator||n.excerpt_separator;if(null==i&&(!1===n.excerpt||null==n.excerpt))return e;let o="string"==typeof n.excerpt?n.excerpt:i||n.delimiters[0],a=e.content.indexOf(o);return -1!==a&&(e.excerpt=e.content.slice(0,a)),e}},79254:function(e,t,n){"use strict";let r=n(78193),i=n(45294);e.exports=function(e,t,n){let o=i(n),a=r(e,o);if("function"!=typeof a.parse)throw TypeError('expected "'+e+'.parse" to be a function');return a.parse(t,o)}},9809:function(e,t,n){"use strict";let r=n(5702),i=n(78193),o=n(45294);function a(e){return"\n"!==e.slice(-1)?e+"\n":e}e.exports=function(e,t,n){if(null==t&&null==n)switch(r(e)){case"object":t=e.data,n={};break;case"string":return e;default:throw TypeError("expected file to be a string or object")}let s=e.content,u=o(n);if(null==t){if(!u.data)return e;t=u.data}let c=e.language||u.language,l=i(c,u);if("function"!=typeof l.stringify)throw TypeError('expected "'+c+'.stringify" to be a function');t=Object.assign({},e.data,t);let f=u.delimiters[0],d=u.delimiters[1],p=l.stringify(t,n).trim(),h="";return"{}"!==p&&(h=a(f)+a(p)+a(d)),"string"==typeof e.excerpt&&""!==e.excerpt&&-1===s.indexOf(e.excerpt.trim())&&(h+=a(e.excerpt)+a(d)),h+a(s)}},28181:function(e,t,n){"use strict";let r=n(5702),i=n(9809),o=n(55707);e.exports=function(e){return"object"!==r(e)&&(e={content:e}),"object"!==r(e.data)&&(e.data={}),e.contents&&null==e.content&&(e.content=e.contents),o.define(e,"orig",o.toBuffer(e.content)),o.define(e,"language",e.language||""),o.define(e,"matter",e.matter||""),o.define(e,"stringify",function(t,n){return n&&n.language&&(e.language=n.language),i(e,t,n)}),e.content=o.toString(e.content),e.isEmpty=!1,e.excerpt="",e}},55707:function(e,t,n){"use strict";var r=n(48764).lW;let i=n(97822),o=n(5702);t.define=function(e,t,n){Reflect.defineProperty(e,t,{enumerable:!1,configurable:!0,writable:!0,value:n})},t.isBuffer=function(e){return"buffer"===o(e)},t.isObject=function(e){return"object"===o(e)},t.toBuffer=function(e){return"string"==typeof e?r.from(e):e},t.toString=function(e){if(t.isBuffer(e))return i(String(e));if("string"!=typeof e)throw TypeError("expected input to be a string or buffer");return i(e)},t.arrayify=function(e){return e?Array.isArray(e)?e:[e]:[]},t.startsWith=function(e,t,n){return"number"!=typeof n&&(n=t.length),e.slice(0,n)===t}},5702:function(e){var t=Object.prototype.toString;function n(e){return"function"==typeof e.constructor?e.constructor.name:null}function r(e){return Array.isArray?Array.isArray(e):e instanceof Array}function i(e){return e instanceof Error||"string"==typeof e.message&&e.constructor&&"number"==typeof e.constructor.stackTraceLimit}function o(e){return e instanceof Date||"function"==typeof e.toDateString&&"function"==typeof e.getDate&&"function"==typeof e.setDate}function a(e){return e instanceof RegExp||"string"==typeof e.flags&&"boolean"==typeof e.ignoreCase&&"boolean"==typeof e.multiline&&"boolean"==typeof e.global}function s(e,t){return"GeneratorFunction"===n(e)}function u(e){return"function"==typeof e.throw&&"function"==typeof e.return&&"function"==typeof e.next}function c(e){try{if("number"==typeof e.length&&"function"==typeof e.callee)return!0}catch(t){if(-1!==t.message.indexOf("callee"))return!0}return!1}function l(e){return!!e.constructor&&"function"==typeof e.constructor.isBuffer&&e.constructor.isBuffer(e)}e.exports=function(e){if(void 0===e)return"undefined";if(null===e)return"null";var f=typeof e;if("boolean"===f)return"boolean";if("string"===f)return"string";if("number"===f)return"number";if("symbol"===f)return"symbol";if("function"===f)return s(e)?"generatorfunction":"function";if(r(e))return"array";if(l(e))return"buffer";if(c(e))return"arguments";if(o(e))return"date";if(i(e))return"error";if(a(e))return"regexp";switch(n(e)){case"Symbol":return"symbol";case"Promise":return"promise";case"WeakMap":return"weakmap";case"WeakSet":return"weakset";case"Map":return"map";case"Set":return"set";case"Int8Array":return"int8array";case"Uint8Array":return"uint8array";case"Uint8ClampedArray":return"uint8clampedarray";case"Int16Array":return"int16array";case"Uint16Array":return"uint16array";case"Int32Array":return"int32array";case"Uint32Array":return"uint32array";case"Float32Array":return"float32array";case"Float64Array":return"float64array"}if(u(e))return"generator";switch(f=t.call(e)){case"[object Object]":return"object";case"[object Map Iterator]":return"mapiterator";case"[object Set Iterator]":return"setiterator";case"[object String Iterator]":return"stringiterator";case"[object Array Iterator]":return"arrayiterator"}return f.slice(8,-1).toLowerCase().replace(/\s/g,"")}},41405:function(e,t,n){"use strict";var r="undefined"!=typeof Symbol&&Symbol,i=n(55419);e.exports=function(){return"function"==typeof r&&"function"==typeof Symbol&&"symbol"==typeof r("foo")&&"symbol"==typeof Symbol("bar")&&i()}},55419:function(e){"use strict";e.exports=function(){if("function"!=typeof Symbol||"function"!=typeof Object.getOwnPropertySymbols)return!1;if("symbol"==typeof Symbol.iterator)return!0;var e={},t=Symbol("test"),n=Object(t);if("string"==typeof t||"[object Symbol]"!==Object.prototype.toString.call(t)||"[object Symbol]"!==Object.prototype.toString.call(n))return!1;var r=42;for(t in e[t]=r,e)return!1;if("function"==typeof Object.keys&&0!==Object.keys(e).length||"function"==typeof Object.getOwnPropertyNames&&0!==Object.getOwnPropertyNames(e).length)return!1;var i=Object.getOwnPropertySymbols(e);if(1!==i.length||i[0]!==t||!Object.prototype.propertyIsEnumerable.call(e,t))return!1;if("function"==typeof Object.getOwnPropertyDescriptor){var o=Object.getOwnPropertyDescriptor(e,t);if(o.value!==r||!0!==o.enumerable)return!1}return!0}},17642:function(e,t,n){"use strict";var r=n(58612);e.exports=r.call(Function.call,Object.prototype.hasOwnProperty)},8679:function(e,t,n){"use strict";var r=n(59864),i={childContextTypes:!0,contextType:!0,contextTypes:!0,defaultProps:!0,displayName:!0,getDefaultProps:!0,getDerivedStateFromError:!0,getDerivedStateFromProps:!0,mixins:!0,propTypes:!0,type:!0},o={name:!0,length:!0,prototype:!0,caller:!0,callee:!0,arguments:!0,arity:!0},a={$$typeof:!0,render:!0,defaultProps:!0,displayName:!0,propTypes:!0},s={$$typeof:!0,compare:!0,defaultProps:!0,displayName:!0,propTypes:!0,type:!0},u={};function c(e){return r.isMemo(e)?s:u[e.$$typeof]||i}u[r.ForwardRef]=a,u[r.Memo]=s;var l=Object.defineProperty,f=Object.getOwnPropertyNames,d=Object.getOwnPropertySymbols,p=Object.getOwnPropertyDescriptor,h=Object.getPrototypeOf,m=Object.prototype;function v(e,t,n){if("string"!=typeof t){if(m){var r=h(t);r&&r!==m&&v(e,r,n)}var i=f(t);d&&(i=i.concat(d(t)));for(var a=c(e),s=c(t),u=0;u */ t.read=function(e,t,n,r,i){var o,a,s=8*i-r-1,u=(1<>1,l=-7,f=n?i-1:0,d=n?-1:1,p=e[t+f];for(f+=d,o=p&(1<<-l)-1,p>>=-l,l+=s;l>0;o=256*o+e[t+f],f+=d,l-=8);for(a=o&(1<<-l)-1,o>>=-l,l+=r;l>0;a=256*a+e[t+f],f+=d,l-=8);if(0===o)o=1-c;else{if(o===u)return a?NaN:(p?-1:1)*(1/0);a+=Math.pow(2,r),o-=c}return(p?-1:1)*a*Math.pow(2,o-r)},t.write=function(e,t,n,r,i,o){var a,s,u,c=8*o-i-1,l=(1<>1,d=23===i?5960464477539062e-23:0,p=r?0:o-1,h=r?1:-1,m=t<0||0===t&&1/t<0?1:0;for(isNaN(t=Math.abs(t))||t===1/0?(s=isNaN(t)?1:0,a=l):(a=Math.floor(Math.log(t)/Math.LN2),t*(u=Math.pow(2,-a))<1&&(a--,u*=2),a+f>=1?t+=d/u:t+=d*Math.pow(2,1-f),t*u>=2&&(a++,u/=2),a+f>=l?(s=0,a=l):a+f>=1?(s=(t*u-1)*Math.pow(2,i),a+=f):(s=t*Math.pow(2,f-1)*Math.pow(2,i),a=0));i>=8;e[n+p]=255&s,p+=h,s/=256,i-=8);for(a=a<0;e[n+p]=255&a,p+=h,a/=256,c-=8);e[n+p-h]|=128*m}},51833:function(e){"use strict";/*!
+ * is-extendable
+ *
+ * Copyright (c) 2015, Jon Schlinkert.
+ * Licensed under the MIT License.
+ */ e.exports=function(e){return null!=e&&("object"==typeof e||"function"==typeof e)}},93320:function(e,t,n){"use strict";var r=n(51294);e.exports=r},51294:function(e,t,n){"use strict";var r=n(40028),i=n(96157);function o(e){return function(){throw Error("Function "+e+" is deprecated and cannot be used.")}}e.exports.Type=n(53899),e.exports.Schema=n(82409),e.exports.FAILSAFE_SCHEMA=n(75322),e.exports.JSON_SCHEMA=n(65796),e.exports.CORE_SCHEMA=n(17318),e.exports.DEFAULT_SAFE_SCHEMA=n(5972),e.exports.DEFAULT_FULL_SCHEMA=n(19321),e.exports.load=r.load,e.exports.loadAll=r.loadAll,e.exports.safeLoad=r.safeLoad,e.exports.safeLoadAll=r.safeLoadAll,e.exports.dump=i.dump,e.exports.safeDump=i.safeDump,e.exports.YAMLException=n(14884),e.exports.MINIMAL_SCHEMA=n(75322),e.exports.SAFE_SCHEMA=n(5972),e.exports.DEFAULT_SCHEMA=n(19321),e.exports.scan=o("scan"),e.exports.parse=o("parse"),e.exports.compose=o("compose"),e.exports.addConstructor=o("addConstructor")},25596:function(e){"use strict";function t(e){return null==e}function n(e){return"object"==typeof e&&null!==e}function r(e){return Array.isArray(e)?e:t(e)?[]:[e]}function i(e,t){var n,r,i,o;if(t)for(n=0,r=(o=Object.keys(t)).length;n0?e.charCodeAt(o-1):null,p=p&&H(a,s)}else{for(o=0;or&&" "!==e[d+1],d=o);else if(!V(a))return X;s=o>0?e.charCodeAt(o-1):null,p=p&&H(a,s)}c=c||f&&o-d-1>r&&" "!==e[d+1]}return u||c?n>9&&$(e)?X:c?Y:K:p&&!i(e)?G:q}function Q(e,t,n,r){e.dump=function(){if(0===t.length)return"''";if(!e.noCompatMode&&-1!==M.indexOf(t))return"'"+t+"'";var o=e.indent*Math.max(1,n),a=-1===e.lineWidth?-1:Math.max(Math.min(e.lineWidth,40),e.lineWidth-o),s=r||e.flowLevel>-1&&n>=e.flowLevel;function u(t){return U(e,t)}switch(J(t,s,e.indent,a,u)){case G:return t;case q:return"'"+t.replace(/'/g,"''")+"'";case K:return"|"+ee(t,e.indent)+et(j(t,o));case Y:return">"+ee(t,e.indent)+et(j(en(t,a),o));case X:return'"'+ei(t,a)+'"';default:throw new i("impossible error: invalid scalar style")}}()}function ee(e,t){var n=$(e)?String(t):"",r="\n"===e[e.length-1];return n+(r&&("\n"===e[e.length-2]||"\n"===e)?"+":r?"":"-")+"\n"}function et(e){return"\n"===e[e.length-1]?e.slice(0,-1):e}function en(e,t){for(var n,r,i,o=/(\n+)([^\n]*)/g,a=(i=-1!==(i=e.indexOf("\n"))?i:e.length,o.lastIndex=i,er(e.slice(0,i),t)),s="\n"===e[0]||" "===e[0];r=o.exec(e);){var u=r[1],c=r[2];n=" "===c[0],a+=u+(s||n||""===c?"":"\n")+er(c,t),s=n}return a}function er(e,t){if(""===e||" "===e[0])return e;for(var n,r,i=/ [^ ]/g,o=0,a=0,s=0,u="";n=i.exec(e);)(s=n.index)-o>t&&(r=a>o?a:s,u+="\n"+e.slice(o,r),o=r+1),a=s;return u+="\n",e.length-o>t&&a>o?u+=e.slice(o,a)+"\n"+e.slice(a+1):u+=e.slice(o),u.slice(1)}function ei(e){for(var t,n,r,i="",o=0;o=55296&&t<=56319&&(n=e.charCodeAt(o+1))>=56320&&n<=57343){i+=R((t-55296)*1024+n-56320+65536),o++;continue}i+=!(r=I[t])&&V(t)?e[o]:r||R(t)}return i}function eo(e,t,n){var r,i,o="",a=e.tag;for(r=0,i=n.length;r1024&&(s+="? "),s+=e.dump+(e.condenseFlow?'"':"")+":"+(e.condenseFlow?"":" "),el(e,t,a,!1,!1)&&(s+=e.dump,u+=s)}e.tag=c,e.dump="{"+u+"}"}function eu(e,t,n,r){var o,a,s,u,c,f,d="",p=e.tag,h=Object.keys(n);if(!0===e.sortKeys)h.sort();else if("function"==typeof e.sortKeys)h.sort(e.sortKeys);else if(e.sortKeys)throw new i("sortKeys must be a boolean or a function");for(o=0,a=h.length;o1024)&&(e.dump&&l===e.dump.charCodeAt(0)?f+="?":f+="? "),f+=e.dump,c&&(f+=B(e,t)),el(e,t+1,u,!0,c)&&(e.dump&&l===e.dump.charCodeAt(0)?f+=":":f+=": ",f+=e.dump,d+=f)}e.tag=p,e.dump=d||"{}"}function ec(e,t,n){var r,o,a,c,l,f;for(a=0,c=(o=n?e.explicitTypes:e.implicitTypes).length;a tag resolver accepts not "'+f+'" style');e.dump=r}return!0}return!1}function el(e,t,n,r,o,a){e.tag=null,e.dump=n,ec(e,n,!1)||ec(e,n,!0);var u=s.call(e.dump);r&&(r=e.flowLevel<0||e.flowLevel>t);var c,l,f="[object Object]"===u||"[object Array]"===u;if(f&&(l=-1!==(c=e.duplicates.indexOf(n))),(null!==e.tag&&"?"!==e.tag||l||2!==e.indent&&t>0)&&(o=!1),l&&e.usedDuplicates[c])e.dump="*ref_"+c;else{if(f&&l&&!e.usedDuplicates[c]&&(e.usedDuplicates[c]=!0),"[object Object]"===u)r&&0!==Object.keys(e.dump).length?(eu(e,t,e.dump,o),l&&(e.dump="&ref_"+c+e.dump)):(es(e,t,e.dump),l&&(e.dump="&ref_"+c+" "+e.dump));else if("[object Array]"===u){var d=e.noArrayIndent&&t>0?t-1:t;r&&0!==e.dump.length?(ea(e,d,e.dump,o),l&&(e.dump="&ref_"+c+e.dump)):(eo(e,d,e.dump),l&&(e.dump="&ref_"+c+" "+e.dump))}else if("[object String]"===u)"?"!==e.tag&&Q(e,e.dump,t,a);else{if(e.skipInvalid)return!1;throw new i("unacceptable kind of an object to dump "+u)}null!==e.tag&&"?"!==e.tag&&(e.dump="!<"+e.tag+"> "+e.dump)}return!0}function ef(e,t){var n,r,i=[],o=[];for(ed(e,i,o),n=0,r=o.length;n>10)+55296,(e-65536&1023)+56320)}for(var N=Array(256),P=Array(256),I=0;I<256;I++)N[I]=k(I)?1:0,P[I]=k(I);function M(e,t){this.input=e,this.filename=t.filename||null,this.schema=t.schema||s,this.onWarning=t.onWarning||null,this.legacy=t.legacy||!1,this.json=t.json||!1,this.listener=t.listener||null,this.implicitTypes=this.schema.compiledImplicit,this.typeMap=this.schema.compiledTypeMap,this.length=e.length,this.position=0,this.line=0,this.lineStart=0,this.lineIndent=0,this.documents=[]}function F(e,t){return new i(t,new o(e.filename,e.input,e.position,e.line,e.position-e.lineStart))}function R(e,t){throw F(e,t)}function L(e,t){e.onWarning&&e.onWarning.call(null,F(e,t))}var j={YAML:function(e,t,n){var r,i,o;null!==e.version&&R(e,"duplication of %YAML directive"),1!==n.length&&R(e,"YAML directive accepts exactly one argument"),null===(r=/^([0-9]+)\.([0-9]+)$/.exec(n[0]))&&R(e,"ill-formed argument of the YAML directive"),i=parseInt(r[1],10),o=parseInt(r[2],10),1!==i&&R(e,"unacceptable YAML version of the document"),e.version=n[0],e.checkLineBreaks=o<2,1!==o&&2!==o&&L(e,"unsupported YAML version of the document")},TAG:function(e,t,n){var r,i;2!==n.length&&R(e,"TAG directive accepts exactly two arguments"),r=n[0],i=n[1],b.test(r)||R(e,"ill-formed tag handle (first argument) of the TAG directive"),u.call(e.tagMap,r)&&R(e,'there is a previously declared suffix for "'+r+'" tag handle'),E.test(i)||R(e,"ill-formed tag prefix (second argument) of the TAG directive"),e.tagMap[r]=i}};function B(e,t,n,r){var i,o,a,s;if(t1&&(e.result+=r.repeat("\n",t-1))}function $(e,t,n){var r,i,o,a,s,u,c,l,f,d=e.kind,p=e.result;if(S(f=e.input.charCodeAt(e.position))||C(f)||35===f||38===f||42===f||33===f||124===f||62===f||39===f||34===f||37===f||64===f||96===f||(63===f||45===f)&&(S(i=e.input.charCodeAt(e.position+1))||n&&C(i)))return!1;for(e.kind="scalar",e.result="",o=a=e.position,s=!1;0!==f;){if(58===f){if(S(i=e.input.charCodeAt(e.position+1))||n&&C(i))break}else if(35===f){if(S(r=e.input.charCodeAt(e.position-1)))break}else if(e.position===e.lineStart&&H(e)||n&&C(f))break;else if(x(f)){if(u=e.line,c=e.lineStart,l=e.lineIndent,z(e,!1,-1),e.lineIndent>=t){s=!0,f=e.input.charCodeAt(e.position);continue}e.position=a,e.line=u,e.lineStart=c,e.lineIndent=l;break}s&&(B(e,o,a,!1),W(e,e.line-u),o=a=e.position,s=!1),_(f)||(a=e.position+1),f=e.input.charCodeAt(++e.position)}return B(e,o,a,!1),!!e.result||(e.kind=d,e.result=p,!1)}function G(e,t){var n,r,i;if(39!==(n=e.input.charCodeAt(e.position)))return!1;for(e.kind="scalar",e.result="",e.position++,r=i=e.position;0!==(n=e.input.charCodeAt(e.position));)if(39===n){if(B(e,r,e.position,!0),39!==(n=e.input.charCodeAt(++e.position)))return!0;r=e.position,e.position++,i=e.position}else x(n)?(B(e,r,i,!0),W(e,z(e,!1,t)),r=i=e.position):e.position===e.lineStart&&H(e)?R(e,"unexpected end of the document within a single quoted scalar"):(e.position++,i=e.position);R(e,"unexpected end of the stream within a single quoted scalar")}function q(e,t){var n,r,i,o,a,s;if(34!==(s=e.input.charCodeAt(e.position)))return!1;for(e.kind="scalar",e.result="",e.position++,n=r=e.position;0!==(s=e.input.charCodeAt(e.position));){if(34===s)return B(e,n,e.position,!0),e.position++,!0;if(92===s){if(B(e,n,e.position,!0),x(s=e.input.charCodeAt(++e.position)))z(e,!1,t);else if(s<256&&N[s])e.result+=P[s],e.position++;else if((a=D(s))>0){for(i=a,o=0;i>0;i--)(a=A(s=e.input.charCodeAt(++e.position)))>=0?o=(o<<4)+a:R(e,"expected hexadecimal character");e.result+=T(o),e.position++}else R(e,"unknown escape sequence");n=r=e.position}else x(s)?(B(e,n,r,!0),W(e,z(e,!1,t)),n=r=e.position):e.position===e.lineStart&&H(e)?R(e,"unexpected end of the document within a double quoted scalar"):(e.position++,r=e.position)}R(e,"unexpected end of the stream within a double quoted scalar")}function K(e,t){var n,r,i,o,a,s,u,l,f,d,p,h=!0,m=e.tag,v=e.anchor,g={};if(91===(p=e.input.charCodeAt(e.position)))o=93,u=!1,r=[];else{if(123!==p)return!1;o=125,u=!0,r={}}for(null!==e.anchor&&(e.anchorMap[e.anchor]=r),p=e.input.charCodeAt(++e.position);0!==p;){if(z(e,!0,t),(p=e.input.charCodeAt(e.position))===o)return e.position++,e.tag=m,e.anchor=v,e.kind=u?"mapping":"sequence",e.result=r,!0;h||R(e,"missed comma between flow collection entries"),f=l=d=null,a=s=!1,63===p&&S(i=e.input.charCodeAt(e.position+1))&&(a=s=!0,e.position++,z(e,!0,t)),n=e.line,en(e,t,c,!1,!0),f=e.tag,l=e.result,z(e,!0,t),p=e.input.charCodeAt(e.position),(s||e.line===n)&&58===p&&(a=!0,p=e.input.charCodeAt(++e.position),z(e,!0,t),en(e,t,c,!1,!0),d=e.result),u?Z(e,r,g,f,l,d):a?r.push(Z(e,null,g,f,l,d)):r.push(l),z(e,!0,t),44===(p=e.input.charCodeAt(e.position))?(h=!0,p=e.input.charCodeAt(++e.position)):h=!1}R(e,"unexpected end of the stream within a flow collection")}function Y(e,t){var n,i,o,a,s=p,u=!1,c=!1,l=t,f=0,d=!1;if(124===(a=e.input.charCodeAt(e.position)))i=!1;else{if(62!==a)return!1;i=!0}for(e.kind="scalar",e.result="";0!==a;)if(43===(a=e.input.charCodeAt(++e.position))||45===a)p===s?s=43===a?m:h:R(e,"repeat of a chomping mode identifier");else if((o=O(a))>=0)0===o?R(e,"bad explicit indentation width of a block scalar; it cannot be less than one"):c?R(e,"repeat of an indentation width identifier"):(l=t+o-1,c=!0);else break;if(_(a)){do a=e.input.charCodeAt(++e.position);while(_(a));if(35===a)do a=e.input.charCodeAt(++e.position);while(!x(a)&&0!==a)}for(;0!==a;){for(V(e),e.lineIndent=0,a=e.input.charCodeAt(e.position);(!c||e.lineIndentl&&(l=e.lineIndent),x(a)){f++;continue}if(e.lineIndent
![](\"/dendron-dbgi/assets/images/2022-06-18-17-13-23.png\")
![](\"/dendron-dbgi/assets/images/2022-06-18-17-47-56.png\")
![](\"/dendron-dbgi/assets/images/2023-06-15-17-11-34.png\")
![](\"/dendron-dbgi/assets/images/2023-06-15-17-12-39.png\")
![](\"/dendron-dbgi/assets/images/2023-06-15-17-21-16.png\")
![\"sync](\"/dendron-dbgi/assets/images/sync_back_QGIS.png\")
Figure 1: Add the layer to the cloud project![\"DOI\"](\"https://zenodo.org/badge/DOI/10.5281/zenodo.7666200.svg\"){kind=icon}
![\"DOI\"](\"https://zenodo.org/badge/DOI/10.5281/zenodo.7662428.svg\"){kind=icon}
![\"DOI\"](\"https://zenodo.org/badge/DOI/10.5281/zenodo.7661180.svg\"){kind=icon}
![\"DOI\"](\"https://zenodo.org/badge/DOI/10.5281/zenodo.7665022.svg\"){kind=icon}
![\"DOI\"](\"https://zenodo.org/badge/DOI/10.5281/zenodo.7663471.svg\"){kind=icon}
![](\"https://foundation-prod-assetspublic53c57cce-8cpvgjldwysl.s3-us-west-2.amazonaws.com/assets/images/not-sprouted.png\")
![\"GNPS\"](\"/dendron-dbgi/assets/images/GNPS.jpeg\")
![\"Roles](\"/dendron-dbgi/assets/images/2023-02-24-08-06-14.png\")
![\"Roles](\"/dendron-dbgi/assets/images/2023-02-24-08-13-25.png\")
![\"Communication](\"/dendron-dbgi/assets/images/2023-02-24-08-34-49.png\")
![https://i.stack.imgur.com/I0vW8.png](\"https://i.stack.imgur.com/I0vW8.png\"){kind=link}
![\"Labelling](\"/dendron-dbgi/assets/images/2023-02-23-17-37-53.png\")
![\"idem\"](\"/dendron-dbgi/assets/images/2023-02-23-17-39-02.png\")
![\"Better](\"/dendron-dbgi/assets/images/Bibtex_settings.png\")
![\"Zotfile](\"/dendron-dbgi/assets/images/Zotfile_settings.png\")
![\"Mdnotes](\"/dendron-dbgi/assets/images/Mdnotes_settings_1.png\")
\n![\"Mdnotes](\"/dendron-dbgi/assets/images/Mdnotes_settings_2.png\")
![\"QField](\"/dendron-dbgi/assets/images/QField_settings.png\")
![\"image](\"/dendron-dbgi/assets/images/image_import.png\")
Figure 1: Image import![\"Alignment](\"/dendron-dbgi/assets/images/alignement_parameters.png\")
Figure 2: Alignment parameters![\"tie](\"/dendron-dbgi/assets/images/tie_points_model.png\")
Figure 3: Tie points cloud model![\"Gradual](\"/dendron-dbgi/assets/images/Gradual_selection.png\")
Figure 4: Gradual selection of the bad aligned points![\"Import](\"/dendron-dbgi/assets/images/import_references.png\")
Figure 5: Importation of control points![\"Import](\"/dendron-dbgi/assets/images/place_points.png\")
Figure 6: Placing the points on the images![\"Build](\"/dendron-dbgi/assets/images/settings_orthomosaic.png\")
Figure 7: Settings to build the orthomosaic![\"molecular](\"/dendron-dbgi/assets/images/molecular_network.png\")
Molecular network composed of 80 plants samples![\"molecular](\"/dendron-dbgi/assets/images/molecular_comparison.png\")
Differences between silica gel and liquid nitrogen![\"chemotaxonomic](\"/dendron-dbgi/assets/images/phylogenetic_tree.png\")
Organisation of the samples based on their chemistry![\"Build](\"/dendron-dbgi/assets/images/QGIS_synchronisation.png\")
How to obtain the synchronized QGIS project![](\"/dendron-dbgi/assets/images/zulip-org-logo.svg\"){kind=logo}
![](\"/dendron-dbgi/assets/images/2023-03-16-13-10-23.png\")
![](\"/dendron-dbgi/assets/images/2023-03-16-13-09-21.png\")
![](\"/dendron-dbgi/assets/images/2023-03-16-13-11-07.png\")
![](\"/dendron-dbgi/assets/images/2023-03-16-13-26-32.png\")
![](\"/dendron-dbgi/assets/images/2023-03-16-13-32-47.png\")
![\"google](\"/dendron-dbgi/assets/images/make_copy.png\")
\nOr export the table as a csv from directus:\n![\"directus](\"/dendron-dbgi/assets/images/directus-samples.jpg\")
\n![\"directus](\"/dendron-dbgi/assets/images/directus-export.jpg\")
![\"samples](\"/dendron-dbgi/assets/images/template.png\")
![\"directus](\"/dendron-dbgi/assets/images/directus-import.jpg\")
![\"physalis](\"/dendron-dbgi/assets/images/Physalis_peruviana_general.jpg\")
Physalis peruviana in general with it's label in the botanical garden (if available)![\"physalis](\"/dendron-dbgi/assets/images/Physalis_peruviana_detail.jpg\")
Detailed fruits and leaves of Physalis peruviana ![\"physalis](\"/dendron-dbgi/assets/images/Physalis_peruviana_sample_loc.jpg\")
The location of the sampling indicated with the scalpel to know exactly what have been prelevated![\"physalis](\"/dendron-dbgi/assets/images/Physalis_peruviana_sample.jpg\")
Photo of the sample with the label (here Physalis peruviana, but for the next harvests, a unique code will be developed). Here the exemple has been made with the silica sampling![\"MS](\"/dendron-dbgi/assets/images/ms_data_treatment.png\")
![\"Project](\"/dendron-dbgi/assets/images/project_schema.png\")
Complete schema of the pilot project![\"ground](\"/dendron-dbgi/assets/images/ground_control_points.png\")
Figure 1 : Map of the Fribourg botanical garden with control points (_d).![\"GPS\"](\"/dendron-dbgi/assets/images/gps.jpg\")
Figure 2 : Leica differential GPS with the GSM technology![\"drone\"](\"/dendron-dbgi/assets/images/drone.jpg\")
Figure 3 : DJI Mavic pro 2 drone with the first ground marker![\"DBGI](\"/dendron-dbgi/assets/images/DBGI_map.png\")
Figure 4 : DBGI map with the pilot samples (_d (Private)).![\"Build](\"/dendron-dbgi/assets/images/iNaturalist_page.png\")
iNaturalist page of Physalis peruviana with all the usefull fields described![](\"/dendron-dbgi/assets/images/2023-09-01-08-53-26.png\")
![](\"/dendron-dbgi/assets/images/2023-09-01-08-55-06.png\")
![](\"/dendron-dbgi/assets/images/2023-09-01-08-55-23.png\")
![\"Figure](\"/dendron-dbgi/assets/images/2022-06-18-18-34-34.png\")
\nFigure 3. Overview of the DBGI main steps and data ![\"selfie\"](\"/dendron-dbgi/assets/images/widsgeneva.jpeg\")
![](\"/dendron-dbgi/assets/images/2023-04-05-10-10-51.png\")
![](\"/dendron-dbgi/assets/images/2023-07-13-21-30-30.png\")