diff --git a/README.md b/README.md index b75939c2e..bffce5220 100644 --- a/README.md +++ b/README.md @@ -53,7 +53,7 @@ For detailed usage and parameters, read [DP-GEN documentation](https://docs.deep * [Tutorials](https://tutorials.deepmodeling.com/en/latest/Tutorials/DP-GEN/): basic tutorials for DP-GEN. * [Examples](examples): input files in [JSON](https://docs.python.org/3/library/json.html) format. -* [Publications](https://deepmodeling.com/blog/papers/dpgen/): Published research articles using DP-GEN. +* [Publications](https://blogs.deepmodeling.com/papers/dpgen/): Published research articles using DP-GEN. * [User guide](https://docs.deepmodeling.com/projects/dpgen/en/latest/user-guide/): frequently asked questions listed in troubleshooting. ## License diff --git a/doc/index.rst b/doc/index.rst index e8eb8b380..11a158050 100644 --- a/doc/index.rst +++ b/doc/index.rst @@ -31,7 +31,7 @@ DPGEN's documentation :glob: Tutorials - Publications + Publications .. _user-guide: diff --git a/doc/init/init-bulk-jdata.rst b/doc/init/init-bulk-jdata.rst index 1cfccfdf5..6d1e16295 100644 --- a/doc/init/init-bulk-jdata.rst +++ b/doc/init/init-bulk-jdata.rst @@ -2,7 +2,7 @@ dpgen init_bulk parameters ====================================== .. note:: - One can load, modify, and export the input file by using our effective web-based tool `DP-GUI `_ online or hosted using the :ref:`command line interface ` :code:`dpgen gui`. All parameters below can be set in DP-GUI. By clicking "SAVE JSON", one can download the input file. + One can load, modify, and export the input file by using our effective web-based tool `DP-GUI `_ online or hosted using the :ref:`command line interface ` :code:`dpgen gui`. All parameters below can be set in DP-GUI. By clicking "SAVE JSON", one can download the input file. .. dargs:: :module: dpgen.data.arginfo diff --git a/doc/init/init-bulk-mdata.rst b/doc/init/init-bulk-mdata.rst index 63958089b..a721d9984 100644 --- a/doc/init/init-bulk-mdata.rst +++ b/doc/init/init-bulk-mdata.rst @@ -2,7 +2,7 @@ dpgen init_bulk machine parameters ================================== .. note:: - One can load, modify, and export the input file by using our effective web-based tool `DP-GUI `_ online or hosted using the :ref:`command line interface ` :code:`dpgen gui`. All parameters below can be set in DP-GUI. By clicking "SAVE JSON", one can download the input file. + One can load, modify, and export the input file by using our effective web-based tool `DP-GUI `_ online or hosted using the :ref:`command line interface ` :code:`dpgen gui`. All parameters below can be set in DP-GUI. By clicking "SAVE JSON", one can download the input file. .. dargs:: :module: dpgen.data.arginfo diff --git a/doc/init/init-reaction-jdata.rst b/doc/init/init-reaction-jdata.rst index 829b9f955..6b17cb662 100644 --- a/doc/init/init-reaction-jdata.rst +++ b/doc/init/init-reaction-jdata.rst @@ -2,7 +2,7 @@ dpgen init_reaction parameters ====================================== .. note:: - One can load, modify, and export the input file by using our effective web-based tool `DP-GUI `_ online or hosted using the :ref:`command line interface ` :code:`dpgen gui`. All parameters below can be set in DP-GUI. By clicking "SAVE JSON", one can download the input file. + One can load, modify, and export the input file by using our effective web-based tool `DP-GUI `_ online or hosted using the :ref:`command line interface ` :code:`dpgen gui`. All parameters below can be set in DP-GUI. By clicking "SAVE JSON", one can download the input file. .. dargs:: :module: dpgen.data.arginfo diff --git a/doc/init/init-reaction-mdata.rst b/doc/init/init-reaction-mdata.rst index 42254a653..2d7426b9c 100644 --- a/doc/init/init-reaction-mdata.rst +++ b/doc/init/init-reaction-mdata.rst @@ -2,7 +2,7 @@ dpgen init_reaction machine parameters ====================================== .. note:: - One can load, modify, and export the input file by using our effective web-based tool `DP-GUI `_ online or hosted using the :ref:`command line interface ` :code:`dpgen gui`. All parameters below can be set in DP-GUI. By clicking "SAVE JSON", one can download the input file. + One can load, modify, and export the input file by using our effective web-based tool `DP-GUI `_ online or hosted using the :ref:`command line interface ` :code:`dpgen gui`. All parameters below can be set in DP-GUI. By clicking "SAVE JSON", one can download the input file. .. dargs:: :module: dpgen.data.arginfo diff --git a/doc/init/init-surf-jdata.rst b/doc/init/init-surf-jdata.rst index c46bfc893..86bbe93a2 100644 --- a/doc/init/init-surf-jdata.rst +++ b/doc/init/init-surf-jdata.rst @@ -2,7 +2,7 @@ dpgen init_surf parameters ====================================== .. note:: - One can load, modify, and export the input file by using our effective web-based tool `DP-GUI `_ online or hosted using the :ref:`command line interface ` :code:`dpgen gui`. All parameters below can be set in DP-GUI. By clicking "SAVE JSON", one can download the input file. + One can load, modify, and export the input file by using our effective web-based tool `DP-GUI `_ online or hosted using the :ref:`command line interface ` :code:`dpgen gui`. All parameters below can be set in DP-GUI. By clicking "SAVE JSON", one can download the input file. .. dargs:: :module: dpgen.data.arginfo diff --git a/doc/init/init-surf-mdata.rst b/doc/init/init-surf-mdata.rst index 361308361..3b88266ab 100644 --- a/doc/init/init-surf-mdata.rst +++ b/doc/init/init-surf-mdata.rst @@ -2,7 +2,7 @@ dpgen init_surf machine parameters ================================== .. note:: - One can load, modify, and export the input file by using our effective web-based tool `DP-GUI `_ online or hosted using the :ref:`command line interface ` :code:`dpgen gui`. All parameters below can be set in DP-GUI. By clicking "SAVE JSON", one can download the input file. + One can load, modify, and export the input file by using our effective web-based tool `DP-GUI `_ online or hosted using the :ref:`command line interface ` :code:`dpgen gui`. All parameters below can be set in DP-GUI. By clicking "SAVE JSON", one can download the input file. .. dargs:: :module: dpgen.data.arginfo diff --git a/doc/overview/code-structure.md b/doc/overview/code-structure.md index b8be78b42..4593c9b2f 100644 --- a/doc/overview/code-structure.md +++ b/doc/overview/code-structure.md @@ -19,7 +19,7 @@ Let's look at the home page of DP-GEN. https://github.com/deepmodeling/dpgen - `tests` : unittest tools for developers. - `examples`: templates for PARAM and MACHINE files for different software, versions and tasks. For details of the parameters in PARAM, you can refer to `TASK parameters` chapters in this document. -If you are confused about how to set up a JSON file, you can also use [dpgui](https://mobile.deepmodeling.com/dpgui/) +If you are confused about how to set up a JSON file, you can also use [dpgui](https://mobile.dpgui.deepmodeling.com/) Most of the code related to DP-GEN functions is in the `dpgen` directory. Open the `dpgen` directory, and we can see ```` diff --git a/doc/run/mdata.rst b/doc/run/mdata.rst index 1ce5dde35..f06109bb5 100644 --- a/doc/run/mdata.rst +++ b/doc/run/mdata.rst @@ -1,7 +1,7 @@ dpgen run machine parameters ============================ .. note:: - One can load, modify, and export the input file by using our effective web-based tool `DP-GUI `_ online or hosted using the :ref:`command line interface ` :code:`dpgen gui`. All parameters below can be set in DP-GUI. By clicking "SAVE JSON", one can download the input file. + One can load, modify, and export the input file by using our effective web-based tool `DP-GUI `_ online or hosted using the :ref:`command line interface ` :code:`dpgen gui`. All parameters below can be set in DP-GUI. By clicking "SAVE JSON", one can download the input file. .. dargs:: :module: dpgen.generator.arginfo diff --git a/doc/run/param.rst b/doc/run/param.rst index cdbb2dde7..74772253e 100644 --- a/doc/run/param.rst +++ b/doc/run/param.rst @@ -3,7 +3,7 @@ dpgen run param parameters ============================= .. note:: - One can load, modify, and export the input file by using our effective web-based tool `DP-GUI `_ online or hosted using the :ref:`command line interface ` :code:`dpgen gui`. All parameters below can be set in DP-GUI. By clicking "SAVE JSON", one can download the input file. + One can load, modify, and export the input file by using our effective web-based tool `DP-GUI `_ online or hosted using the :ref:`command line interface ` :code:`dpgen gui`. All parameters below can be set in DP-GUI. By clicking "SAVE JSON", one can download the input file. .. dargs:: :module: dpgen.generator.arginfo diff --git a/doc/simplify/simplify-jdata.rst b/doc/simplify/simplify-jdata.rst index d98a64b26..39360ce79 100644 --- a/doc/simplify/simplify-jdata.rst +++ b/doc/simplify/simplify-jdata.rst @@ -2,7 +2,7 @@ dpgen simplify parameters ========================= .. note:: - One can load, modify, and export the input file by using our effective web-based tool `DP-GUI `_ online or hosted using the :ref:`command line interface ` :code:`dpgen gui`. All parameters below can be set in DP-GUI. By clicking "SAVE JSON", one can download the input file. + One can load, modify, and export the input file by using our effective web-based tool `DP-GUI `_ online or hosted using the :ref:`command line interface ` :code:`dpgen gui`. All parameters below can be set in DP-GUI. By clicking "SAVE JSON", one can download the input file. .. dargs:: :module: dpgen.simplify.arginfo diff --git a/doc/simplify/simplify-mdata.rst b/doc/simplify/simplify-mdata.rst index 0008e0926..d34bef1ca 100644 --- a/doc/simplify/simplify-mdata.rst +++ b/doc/simplify/simplify-mdata.rst @@ -2,7 +2,7 @@ dpgen simplify machine parameters ================================= .. note:: - One can load, modify, and export the input file by using our effective web-based tool `DP-GUI `_ online or hosted using the :ref:`command line interface ` :code:`dpgen gui`. All parameters below can be set in DP-GUI. By clicking "SAVE JSON", one can download the input file. + One can load, modify, and export the input file by using our effective web-based tool `DP-GUI `_ online or hosted using the :ref:`command line interface ` :code:`dpgen gui`. All parameters below can be set in DP-GUI. By clicking "SAVE JSON", one can download the input file. .. dargs:: :module: dpgen.simplify.arginfo