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pilotreview.bib
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doi = {10.1016/j.softx.2015.03.001},
url = {http://dx.doi.org/10.1016/j.softx.2015.03.001},
note = {DOI: 10.1016/j.softx.2015.03.001},
year={2015},
publisher={Elsevier}}
}
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title={Distributed computing in practice: The Condor experience},
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year={2005}
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title={Understanding and mastering dynamics in computing grids: processing},
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title={Distributed analysis environment for {HEP} and interdisciplinary applications},
author={Mo{\'s}cicki, JT},
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number={2},
pages={426--429},
year={2003},
publisher={Elsevier}
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title={{DAG4DIANE-enabling DAG-based applications on DIANE framework}},
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year={2009}
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title={Flexible and efficient workflow deployment of data-intensive applications on grids with {MOTEUR}},
author={Glatard, Tristan and Montagnat, Johan and Lingrand, Diane and Pennec, Xavier},
journal={International Journal of High Performance Computing Applications},
volume={22},
number={3},
pages={347--360},
year={2008},
publisher={SAGE Publications}
}
@inproceedings{luckow2012,
title={{$P*$}: a model of pilot-abstractions},
author={Luckow, Andre and Santcroos, Mark and Merzky, Andre and Weidner, Ole and Mantha, Pradeep and Jha, Shantenu},
booktitle={E-Science ({e-Science}), 2012 {IEEE} 8th International Conference on},
pages={1--10},
year={2012},
organization={{IEEE}}
}
@misc{merzky2015radical,
author={Andre Merzky and Mark Santcroos and Matteo Turilli and Shantenu Jha},
title={RADICAL-Pilot: A Scalable Implementation of the Pilot Abstraction},
OPTbooktitle={},
year={2015},
note={Under review. \\ Draft available at: \url{http://radical.rutgers.edu/publications/rp-paper-2015}}
}
@misc{saga_url,
key = {{RADICAL-SAGA}},
institution = {{RADICAL CyberTools}},
note = {The {SAGA} Project, \url{http://radical-cybertools.github.io/saga-python/index.html}}
}
@misc{emdtoolkit_url,
key = {{Ensemble MD Toolkit}},
institution = {{RADICAL CyberTools}},
note = {{Ensemble MD Toolkit}, \url{http://radical-cybertools.github.io/ensemble-md/index.html}}
}
@misc{rp_url,
key = {{RADICAL-Pilot}},
institution = {{RADICAL CyberTools}},
note = {{RADICAL-Pilot}, \url{http://radical-cybertools.github.io/radical-pilot/index.html}}
}
@misc{lhcb_url,
key = {{LHCb} experiment},
institution = {{LHCb} experiment},
note = {The {LHCb} experiment, \url{http://lhcb-public.web.cern.ch/lhcb-public/}}
}
@misc{mycluster_url,
key = {{MyCluster}},
institution = {Texas Advanced Computing Center ({TACC})},
note = {{MyCluster} home page, \url{https://sites.google.com/site/ewalker544/research-2/mycluster}}
}
@article{dpa_surveypaper,
title={Distributed computing practice for large-scale science and engineering applications},
author={Jha, Shantenu and Cole, Murray and Katz, Daniel S and Parashar, Manish and Rana, Omer and Weissman, Jon},
journal={Concurrency and Computation: Practice and Experience},
volume={25},
number={11},
pages={1559--1585},
year={2013},
publisher={Wiley Online Library}
}
@book{taylor2014,
title={Workflows for {{e-Science}}: scientific workflows for grids},
author={Taylor, Ian J and Deelman, Ewa and Gannon, Dennis B and Shields, Matthew},
year={2014},
publisher={Springer Publishing Company, Incorporated}
}
@article{borthakur2008,
title={{HDFS} architecture guide},
author={Borthakur, Dhruba},
journal={{HADOOP} Apache Project \url{http://hadoop.apache.org/docs/r1.2.1/hdfs_design.html}},
year={2008}
}
@inproceedings{vavilapalli2013,
title={Apache hadoop {YARN}: Yet another resource negotiator},
author={Vavilapalli, Vinod Kumar and Murthy, Arun C and Douglas, Chris and Agarwal, Sharad and Konar, Mahadev and Evans, Robert and Graves, Thomas and Lowe, Jason and Shah, Hitesh and Seth, Siddharth and others},
booktitle={Proceedings of the 4th annual Symposium on Cloud Computing},
pages={5},
year={2013},
organization={{ACM}}
}
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title={Cloud computing: state-of-the-art and research challenges},
author={Zhang, Qi and Cheng, Lu and Boutaba, Raouf},
journal={Journal of internet services and applications},
volume={1},
number={1},
pages={7--18},
year={2010},
publisher={Springer}
}
@article{rey2015open,
title={Open Geospatial Analytics with {PySAL}},
author={Rey, Sergio J and Anselin, Luc and Li, Xun and Pahle, Robert and Laura, Jason and Li, Wenwen and Koschinsky, Julia},
journal={ISPRS International Journal of Geo-Information},
volume={4},
number={2},
pages={815--836},
year={2015},
publisher={Multidisciplinary Digital Publishing Institute}
}
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title={A primer on precision medicine informatics},
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journal={Briefings in bioinformatics},
year={2015},
publisher={Oxford Univ Press}
}
@misc{nersc_url,
key = {{NERSC}},
institution = {{NERSC}},
note = {National Energy Research Scientific Computing Center (NERSC), \url{https://www.nersc.gov/}}
}
@misc{olcf_url,
key = {{OLCF}},
institution = {{OLCF}},
note = {Oak Ridge National Laboratory (OLCF), \url{https://www.olcf.ornl.gov/}}
}
@misc{ncsa_url,
key = {{NCSA}},
institution = {{NCSA}},
note = {National Centre for Supercompunting Applications (NCSA), \url{http://www.ncsa.illinois.edu/}}
}
@misc{lrz_url,
key = {{LRZ}},
institution = {{LRZ}},
note = {Leibniz-Rechenzentrum (LRZ), \url{https://www.lrz.de/}}
}
@misc{osg_url,
author={{OSG}},
institution={{Open Science Grid (OSG)}},
note={{Open Science Grid} home, \url{http://www.opensciencegrid.org/}},
}
@misc{diane_url,
key = {{DIANE}},
institution = {{CERN}},
note = {DIANE API and reference documentation, \url{http://it-proj-diane.web.cern.ch/it-proj-diane/install/2.4/doc/reference/html/index.html}}
}
@misc{ganga_url,
key = {{GANGA}},
institution = {{CERN}},
note = {GANGA homepage, \url{https://ganga.web.cern.ch/}}
}
@misc{glidein_manual_url,
key = {{Glidein Manual}},
institution = {{UW-Madison Computer Sciences Department}},
note = {HTCondor Manual v7.6.10, Glidein, \url{http://research.cs.wisc.edu/htcondor/manual/v7.6.10/5_4Glidein.html}}
}
@misc{glidein_presentation_url,
title={The {Glidein} Service},
author={Gideon Juve},
note = {Presentation, \url{http://www.slideserve.com/embed/5100433}}
}
@misc{glideinwms_manual_url,
key={{Glidein} based {WMS}},
institution={{USCMS}},
note = {{Glidein} based {WMS}, manual, \url{http://www.uscms.org/SoftwareComputing/Grid/WMS/glideinWMS/doc.v1_0/manual/index.html}}
}
@misc{glideinwms_url,
key={{GlideinWMS}},
institution={{USCMS}},
note = {{GlideinWMS} homepage, \url{http://www.uscms.org/SoftwareComputing/Grid/WMS/glideinWMS/doc.prd/index.html}}
}
@misc{classad_url,
key={{ClassAd}},
institution={{UW-Madison Computer Sciences Department}},
note = {{HTCondor ClassAd}, \url{http://research.cs.wisc.edu/htcondor/manual/v7.8/4_1HTCondor_s_ClassAd.html}}
}
@misc{pandarun_url,
key={PandaRun},
institution={{CERN}},
note = {{PandaRun}, \url{https://twiki.cern.ch/twiki/bin/view/PanDA/PandaRun}}
}
@misc{hadoop_url,
key={{Apache Hadoop}},
institution={The {Apache} software foundation},
note = {{PandaRun}, \url{http://hadoop.apache.org/}}
}
@misc{panda_architecture_url,
key={{PanDA} Architecture},
institution={{CERN}},
note = {{PanDA} Architecture, \url{https://twiki.cern.ch/twiki/bin/view/PanDA/PanDA#Architecture_and_workflow}}
}
@misc{coasters_url,
Key = {coasters},
institution={{Mathematics and Computer Science, Argonne National Laboratory (ANL)}},
note={Coasters, \url{http://wiki.cogkit.org/wiki/Coasters}},
}
@misc{llama_url,
key={Llama},
institution={{Cloudera Inc.}},
note = {Llama - {Low Latency Application MAster}, \url{http://cloudera.github.io/llama/}},
}
@misc{tez_url,
key={Apache Tez},
institution={The {Apache} software foundation},
note={Apache Tez, \url{https://tez.apache.org/}},
}
@misc{lhc_url,
key={{LHC}},
institution={{CERN}},
note={{Large Hadron Collider (LHC)}, homepage, \url{http://home.web.cern.ch/topics/large-hadron-collider}},
}
@misc{wlcg_url,
key={{WLCG}},
institution={{CERN}},
note={{Worldwide LHC Computing Grid (WLCG)}, homepage, \url{http://wlcg.web.cern.ch/}},
}
@misc{acf_url,
key={{ACF}},
institution={{Brookhaven National Laboratory (BNL)}},
note={The {US} {ATLAS} Computing Facility ({ACF}) at {Brookhaven National Laboratory} ({BNL}), \url{https://www.racf.bnl.gov/experiments/usatlas}},
}
@misc{cog_url,
key={{CoG}},
institution={{Globus Alliance}},
note={{Java CoG Kit}, home page, \url{https://wiki.cogkit.org/wiki/Main_Page}},
}
@misc{openpbs_url,
key={{OpenPBS}},
institution={{Math & Computer Science Division of Argonne National Laboratory (ANL)}},
note={{OpenPBS} home page, \url{http://www.mcs.anl.gov/research/projects/openpbs/}},
}
@misc{swift_guide_url,
key={{Swift User Guide}},
institution={{NSF, DoE Office of Science, NIH, ANL, University of Chicago Computation Institute}},
note={Swift user guide, \url{http://swift-lang.org/guides/release-0.96/userguide/userguide.html}}
}
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title={A multi-dimensional scheduling scheme for {QoS}-aware real-time applications on heterogeneous clusters},
author={Zhu, Xiaomin and Lu, Peizhong},
booktitle={High Performance Computing and Communications, 2008. HPCC'08. 10th {IEEE} International Conference on},
pages={205--212},
year={2008},
organization={{IEEE}}
}
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title={S4: Distributed stream computing platform},
author={Neumeyer, Leonardo and Robbins, Bruce and Nair, Anish and Kesari, Anand},
booktitle={Data Mining Workshops ({ICDMW}), 2010 {IEEE} International Conference on},
pages={170--177},
year={2010},
organization={{IEEE}}
}
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title={Pilot-data: an abstraction for distributed data},
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year={2014},
publisher={Elsevier}
}
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title={Biomedical applications on the grid: Efficient management of parallel jobs},
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booktitle={Nuclear Science Symposium Conference Record, 2004 {IEEE}},
volume={4},
pages={2143--2147},
year={2004},
organization={{IEEE}}
}
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title={Virtual screening on large scale grids},
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year={2007},
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}
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title={Distributed geant4 simulation in medical and space science applications using {DIANE} framework and the GRID},
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title={{gSWAT} platform for grid based hydrological model calibration and execution},
author={Bacu, Victor and Mihon, Danut and Rodila, Denisa and Stefanut, Teodor and Gorgan, Dorian},
booktitle={Parallel and Distributed Computing (ISPDC), 2011 10th International Symposium on},
pages={288--291},
year={2011},
organization={{IEEE}}
}
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title={Simulation of {X-ray} fluorescence and application to planetary astrophysics},
author={Mantero, A and Bavdaz, B and Owens, A and Peacock, T and Pia, MG},
booktitle={Nuclear Science Symposium Conference Record, 2003 {IEEE}},
volume={3},
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year={2003},
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title={Understanding and mastering dynamics in computing grids: processing moldable tasks with user-level overlay},
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year={2011}
}
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title={{GANGA}: a tool for computational-task management and easy access to Grid resources},
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title={{glideinWMS}—a generic pilot-based workload management system},
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pages={062044},
year={2008},
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title={Workflow management in condor},
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booktitle={Workflows for {e-Science}},
pages={357--375},
year={2007},
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title={{Condor DAGMan}: Handling inter-job dependencies},
author={Frey, James},
journal={University of Wisconsin, Dept. of Computer Science, Tech. Rep},
year={2002}
}
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title={{GWpilot}: Enabling multi-level scheduling in distributed infrastructures with GridWay and pilot jobs},
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pages={25--52},
year={2015},
publisher={Elsevier}
}
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title={Scalable and resilient workflow executions on production distributed computing infrastructures},
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year={2012},
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@techreport{de2014panda,
title={{PanDA}: A New Paradigm for Distributed Computing in {HEP} Through the Lens of {ATLAS} and other Experiments},
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year={2014},
institution={ATL-COM-SOFT-2014-027}
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title={{PanDA} pilot submission using {Condor-G}: experience and improvements},
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title={{PD2P}: {PanDA} dynamic data placement for {ATLAS}},
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title={Overview of atlas panda workload management},
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title={Multi-core job submission and grid resource scheduling for {ATLAS} {AthenaMP}},
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title={Evolution of the {ATLAS} {PanDA} workload management system for exascale computational science},
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title={{Condor-G}: A computation management agent for multi-institutional grids},
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year={2002},
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}
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title={{Co-Pilot}: The Distributed Job Execution Framework},
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year={2011},
institution={CERN},
month={03}
}
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title={{LHCb} computing technical design report},
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institution={CERN},
number={{CERN-LHCC-2005-019 ; LHCb-TDR-11}},
year={2005},
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}
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title={Alien resource brokers},
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title={Recent Improvements in the {ATLAS PanDA} Pilot},
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title={{DIANE} - distributed analysis environment for {GRID}-enabled simulation and analysis of physics data},
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booktitle={Nuclear Science Symposium Conference Record, 2003 IEEE},
volume={3},
pages={1617--1620},
year={2003},
organization={IEEE}
}
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title={{AliEn}: {ALICE} environment on the {GRID}},
author={Saiz, Pablo and Aphecetche, L and Bun{\v{c}}i{\'c}, Predrag and Piska{\v{c}}, Ru{\v{z}}ica and Revsbech, J-E and {\v{S}}ego, Vedran and Alice Collaboration and others},
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volume={502},
number={2},
pages={437--440},
year={2003},
publisher={Elsevier}
}
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title={{DIRAC} pilot framework and the {DIRAC} {Workload Management System}},
author={Casajus, Adrian and Graciani, Ricardo and Paterson, Stuart and Tsaregorodtsev, Andrei and others},
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volume={219(6)},
pages={062049},
year={2010},
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